File Info
- Filename
- 1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.filtered.vcf.gz.filteringStats.tsv
- Full Path
- s3://natera-platform-sandbox/platform-infra/stories/PLTFINF-169-semiproductionize/cgp_atx_exp0001/tools_daq_bams__8a99ba01--20260203-171151/variant_calling/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.filtered.vcf.gz.filteringStats.tsv
- Size
- 1.9 KB
- Workflow Run
- sarek-tools-daq-8a99ba01
- Published
- Feb 03, 2026 10:44 PM
Content
View in new tab| #<METADATA>Ln | prior | of | deletion | of | length | 10=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 9=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 8=-17.43319930748167 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 7=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 6=-17.43319930748167 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 5=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 4=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 3=-17.43319930748167 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 2=-16.740020419245898 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 1=-15.201329047896365 | ||||
| #<METADATA>Ln | prior | of | SNV=-8.01504997007107 | |||||||
| #<METADATA>Ln | prior | of | insertion | of | length | 1=-15.29744764311893 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 2=-17.43319930748167 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 3=-16.740052152610758 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 4=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 5=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 6=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 7=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 8=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 9=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 10=-20.72326583694641 | ||||
| #<METADATA>Background | beta-binomial | cluster=weight | = | 0.1446, | alpha | = | 2.83, | beta | = | 2.41 |
| #<METADATA>High-AF | beta-binomial | cluster=weight | = | 0.0001, | alpha | = | 9.94, | beta | = | 1.35 |
| #<METADATA>Binomial | cluster=weight | = | 0.4782, | mean | = | 0.327 | ||||
| #<METADATA>Binomial | cluster=weight | = | 0.3294, | mean | = | 0.353 | ||||
| #<METADATA>Binomial | cluster=weight | = | 0.0477, | mean | = | 0.379 | ||||
| #<METADATA>threshold=0.499 | ||||||||||
| #<METADATA>fdr=0.002 | ||||||||||
| #<METADATA>sensitivity=0.998 | ||||||||||
| filter | FP | FDR | FN | FNR | ||||||
| weak_evidence | 0.89 | 0.0 | 1.36 | 0.0 | ||||||
| strand_bias | 9.49 | 0.0 | 2.9 | 0.0 | ||||||
| contamination | 3.19 | 0.0 | 6.21 | 0.0 | ||||||
| normal_artifact | 1.25 | 0.0 | 1.55 | 0.0 | ||||||
| orientation | 5.1 | 0.0 | 5.7 | 0.0 | ||||||
| slippage | 0.0 | 0.0 | 0.0 | 0.0 | ||||||
| haplotype | 2.58 | 0.0 | 1.5 | 0.0 | ||||||
| germline | 0.0 | 0.0 | 0.0 | 0.0 |
38 rows