File Info
- Filename
- 1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.mutect2.filtered.vcf.gz.filteringStats.tsv
- Full Path
- s3://natera-platform-sandbox/platform-infra/stories/PLTFINF-169-semiproductionize/cgp_atx_exp0001/tools_daq_bams__8a99ba01--20260203-171151/variant_calling/chip_variants/1029_BFKM-N1-BDNA-1_2375WFLT3_s28/somatic_matched/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.mutect2.filtered.vcf.gz.filteringStats.tsv
- Size
- 2.0 KB
- Workflow Run
- sarek-tools-daq-8a99ba01
- Published
- Feb 03, 2026 11:03 PM
Content
View in new tab| #<METADATA>Ln | prior | of | deletion | of | length | 10=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 9=-17.431686649152766 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 8=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 7=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 6=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 5=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 4=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 3=-16.73830753340482 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 2=-16.367533671413486 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 1=-14.017276022778397 | ||||
| #<METADATA>Ln | prior | of | SNV=-9.093264307403908 | |||||||
| #<METADATA>Ln | prior | of | insertion | of | length | 1=-15.597971285451113 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 2=-16.730162376788062 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 3=-16.73279786725329 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 4=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 5=-16.7057092088432 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 6=-16.361233570948542 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 7=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 8=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 9=-16.75376296861394 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 10=-17.46587290564433 | ||||
| #<METADATA>Background | beta-binomial | cluster=weight | = | 0.6650, | alpha | = | 1.31, | beta | = | 1.61 |
| #<METADATA>High-AF | beta-binomial | cluster=weight | = | 0.0003, | alpha | = | 9.87, | beta | = | 1.90 |
| #<METADATA>Binomial | cluster=weight | = | 0.1765, | mean | = | 0.401 | ||||
| #<METADATA>Binomial | cluster=weight | = | 0.0992, | mean | = | 0.251 | ||||
| #<METADATA>Binomial | cluster=weight | = | 0.0589, | mean | = | 0.521 | ||||
| #<METADATA>threshold=0.528 | ||||||||||
| #<METADATA>fdr=0.038 | ||||||||||
| #<METADATA>sensitivity=0.925 | ||||||||||
| filter | FP | FDR | FN | FNR | ||||||
| weak_evidence | 9.16 | 0.0 | 29.98 | 0.01 | ||||||
| strand_bias | 108.17 | 0.02 | 46.41 | 0.01 | ||||||
| contamination | 9.25 | 0.0 | 17.01 | 0.0 | ||||||
| normal_artifact | 5.59 | 0.0 | 13.32 | 0.0 | ||||||
| orientation | 104.24 | 0.02 | 240.1 | 0.05 | ||||||
| slippage | 0.0 | 0.0 | 0.0 | 0.0 | ||||||
| haplotype | 12.46 | 0.0 | 20.47 | 0.0 | ||||||
| germline | 0.04 | 0.0 | 0.44 | 0.0 |
38 rows