Prefix: s3://natera-platform-sandbox/platform-infra/stories/PLTFINF-169-semiproductionize/cgp_atx_exp0001/tools_daq_bams__8a99ba01--20260203-171151
| Path | ||
|---|---|---|
| /annotation/mutect2/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.mutect2.whatshap.phased_custom.ann_snpEff.ann.vcf.gz.tbi | Feb 03, 2026 11:15 PM | |
| /reports/raw_qc/snpeff/mutect2/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.mutect2.whatshap.phased_custom.ann_snpEff.genes.txt | Feb 03, 2026 11:14 PM | |
| /reports/raw_qc/snpeff/mutect2/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.mutect2.whatshap.phased_custom.ann_snpEff.csv | Feb 03, 2026 11:14 PM | |
| /annotation/mutect2/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.mutect2.filtered_custom.ann_snpEff_VEP.ann.vcf.gz.tbi | Feb 03, 2026 11:12 PM | |
| /annotation/mutect2/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.mutect2.filtered_custom.ann_snpEff_VEP.ann.vcf.gz | Feb 03, 2026 11:11 PM | |
| /reports/EnsemblVEP/mutect2/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.mutect2.filtered_custom.ann_snpEff_VEP.ann.summary.html | Feb 03, 2026 11:11 PM | |
| /reports/raw_qc/vcftools/mutect2/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.mutect2.whatshap.phased.TsTv.count | Feb 03, 2026 11:10 PM | |
| /reports/raw_qc/vcftools/mutect2/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.mutect2.whatshap.phased.FILTER.summary | Feb 03, 2026 11:10 PM | |
| /reports/raw_qc/vcftools/mutect2/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.mutect2.whatshap.phased.TsTv.qual | Feb 03, 2026 11:10 PM | |
| /reports/raw_qc/bcftools/mutect2/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.mutect2.whatshap.phased.bcftools_stats.txt | Feb 03, 2026 11:10 PM | |
| /annotation/mutect2/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.mutect2.filtered_custom.ann_snpEff.ann.vcf.gz.tbi | Feb 03, 2026 11:09 PM | |
| /annotation/mutect2/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.mutect2.filtered_custom.ann_snpEff.ann.vcf.gz | Feb 03, 2026 11:09 PM | |
| /variant_calling/whatshap/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.mutect2.whatshap.phased.vcf.gz | Feb 03, 2026 11:09 PM | |
| /variant_calling/chip_variants/1029_BFKM-N1-BDNA-1_2375WFLT3_s28/1029_BFKM-N1-BDNA-1_2375WFLT3_s28.chip_candidates.vcf.gz | Feb 03, 2026 11:08 PM | |
| /variant_calling/chip_variants/1029_BFKM-N1-BDNA-1_2375WFLT3_s28/1029_BFKM-N1-BDNA-1_2375WFLT3_s28.chip_candidates.vcf.gz.tbi | Feb 03, 2026 11:08 PM | |
| /reports/raw_qc/snpeff/mutect2/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28/snpEff_summary.html | Feb 03, 2026 11:08 PM | |
| /reports/raw_qc/snpeff/mutect2/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.mutect2.filtered_custom.ann_snpEff.genes.txt | Feb 03, 2026 11:08 PM | |
| /reports/raw_qc/snpeff/mutect2/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.mutect2.filtered_custom.ann_snpEff.csv | Feb 03, 2026 11:08 PM | |
| /reports/raw_qc/vcftools/mutect2/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.mutect2.filtered.FILTER.summary | Feb 03, 2026 11:04 PM | |
| /reports/raw_qc/vcftools/mutect2/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.mutect2.filtered.TsTv.count | Feb 03, 2026 11:04 PM |