Prefix: s3://natera-platform-sandbox/platform-infra/stories/PLTFINF-169-semiproductionize/cgp_atx_exp0001/tools_daq_bams__8a99ba01--20260203-171151
| Path | ||
|---|---|---|
| /reports/raw_qc/vcftools/mutect2/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.mutect2.filtered.TsTv.qual | Feb 03, 2026 11:04 PM | |
| /variant_calling/hrd/TiH/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.hrd.csv | Feb 03, 2026 11:04 PM | |
| /reports/raw_qc/bcftools/mutect2/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.mutect2.filtered.bcftools_stats.txt | Feb 03, 2026 11:04 PM | |
| /variant_calling/chip_variants/1029_BFKM-N1-BDNA-1_2375WFLT3_s28/somatic_matched/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.mutect2.filtered.vcf.gz | Feb 03, 2026 11:03 PM | |
| /variant_calling/mutect2/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.mutect2.filtered.vcf.gz | Feb 03, 2026 11:03 PM | |
| /variant_calling/mutect2/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.mutect2.filtered.vcf.gz.tbi | Feb 03, 2026 11:03 PM | |
| /variant_calling/chip_variants/1029_BFKM-N1-BDNA-1_2375WFLT3_s28/somatic_matched/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.mutect2.filtered.vcf.gz.tbi | Feb 03, 2026 11:03 PM | |
| /variant_calling/chip_variants/1029_BFKM-N1-BDNA-1_2375WFLT3_s28/somatic_matched/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.mutect2.filtered.vcf.gz.filteringStats.tsv | Feb 03, 2026 11:03 PM | |
| /variant_calling/mutect2/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.mutect2.filtered.vcf.gz.filteringStats.tsv | Feb 03, 2026 11:03 PM | |
| /annotation/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.whatshap.phased_custom.ann_snpEff_VEP.ann.vcf.gz.tbi | Feb 03, 2026 11:02 PM | |
| /variant_calling/mutect2/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.mutect2.artifactprior.tar.gz | Feb 03, 2026 11:02 PM | |
| /annotation/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.whatshap.phased_custom.ann_snpEff_VEP.ann.vcf.gz | Feb 03, 2026 11:01 PM | |
| /reports/EnsemblVEP/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.whatshap.phased_custom.ann_snpEff_VEP.ann.summary.html | Feb 03, 2026 11:01 PM | |
| /annotation/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.whatshap.phased_custom.ann_snpEff.ann.vcf.gz | Feb 03, 2026 10:59 PM | |
| /annotation/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.whatshap.phased_custom.ann_snpEff.ann.vcf.gz.tbi | Feb 03, 2026 10:59 PM | |
| /reports/raw_qc/snpeff/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.whatshap.phased_custom.ann_snpEff.csv | Feb 03, 2026 10:58 PM | |
| /reports/raw_qc/snpeff/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.whatshap.phased_custom.ann_snpEff.genes.txt | Feb 03, 2026 10:58 PM | |
| /reports/raw_qc/vcftools/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.whatshap.phased.TsTv.count | Feb 03, 2026 10:54 PM | |
| /reports/raw_qc/vcftools/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.whatshap.phased.FILTER.summary | Feb 03, 2026 10:54 PM | |
| /reports/raw_qc/vcftools/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.whatshap.phased.TsTv.qual | Feb 03, 2026 10:54 PM |