Prefix: s3://natera-platform-sandbox/platform-infra/stories/PLTFINF-169-semiproductionize/cgp_atx_exp0001/tools_daq_bams__8a99ba01--20260203-171151
| Path | ||
|---|---|---|
| /annotation/mutect2/1029_8BO-T1-TDNA-1_23FC2GLT4_s18_vs_1029_8BO-N1-BDNA-1_2375WFLT3_s18/1029_8BO-T1-TDNA-1_23FC2GLT4_s18_vs_1029_8BO-N1-BDNA-1_2375WFLT3_s18.mutect2.whatshap.phased_custom.ann_snpEff_VEP.ann.vcf.gz.tbi | Feb 03, 2026 10:54 PM | |
| /reports/raw_qc/bcftools/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.whatshap.phased.bcftools_stats.txt | Feb 03, 2026 10:54 PM | |
| /annotation/mutect2/1029_8BO-T1-TDNA-1_23FC2GLT4_s18_vs_1029_8BO-N1-BDNA-1_2375WFLT3_s18/1029_8BO-T1-TDNA-1_23FC2GLT4_s18_vs_1029_8BO-N1-BDNA-1_2375WFLT3_s18.mutect2.whatshap.phased_custom.ann_snpEff_VEP.ann.vcf.gz | Feb 03, 2026 10:53 PM | |
| /annotation/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.filtered_custom.ann_snpEff_VEP.ann.vcf.gz.tbi | Feb 03, 2026 10:53 PM | |
| /reports/EnsemblVEP/mutect2/1029_8BO-T1-TDNA-1_23FC2GLT4_s18_vs_1029_8BO-N1-BDNA-1_2375WFLT3_s18/1029_8BO-T1-TDNA-1_23FC2GLT4_s18_vs_1029_8BO-N1-BDNA-1_2375WFLT3_s18.mutect2.whatshap.phased_custom.ann_snpEff_VEP.ann.summary.html | Feb 03, 2026 10:53 PM | |
| /variant_calling/whatshap/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.whatshap.phased.vcf.gz | Feb 03, 2026 10:53 PM | |
| /variant_calling/mutect2/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.mutect2.vcf.gz | Feb 03, 2026 10:52 PM | |
| /variant_calling/chip_variants/1029_BFKM-N1-BDNA-1_2375WFLT3_s28/somatic_matched/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.mutect2.vcf.gz.tbi | Feb 03, 2026 10:52 PM | |
| /variant_calling/chip_variants/1029_BFKM-N1-BDNA-1_2375WFLT3_s28/somatic_matched/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.mutect2.vcf.gz | Feb 03, 2026 10:52 PM | |
| /variant_calling/mutect2/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.mutect2.vcf.gz.tbi | Feb 03, 2026 10:52 PM | |
| /annotation/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.filtered_custom.ann_snpEff_VEP.ann.vcf.gz | Feb 03, 2026 10:52 PM | |
| /variant_calling/mutect2/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28/1029_BFKM-T1-TDNA-1_23FC2GLT4_s28_vs_1029_BFKM-N1-BDNA-1_2375WFLT3_s28.mutect2.vcf.gz.stats | Feb 03, 2026 10:52 PM | |
| /reports/EnsemblVEP/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.filtered_custom.ann_snpEff_VEP.ann.summary.html | Feb 03, 2026 10:52 PM | |
| /annotation/mutect2/1029_8BO-T1-TDNA-1_23FC2GLT4_s18_vs_1029_8BO-N1-BDNA-1_2375WFLT3_s18/1029_8BO-T1-TDNA-1_23FC2GLT4_s18_vs_1029_8BO-N1-BDNA-1_2375WFLT3_s18.mutect2.whatshap.phased_custom.ann_snpEff.ann.vcf.gz | Feb 03, 2026 10:51 PM | |
| /annotation/mutect2/1029_8BO-T1-TDNA-1_23FC2GLT4_s18_vs_1029_8BO-N1-BDNA-1_2375WFLT3_s18/1029_8BO-T1-TDNA-1_23FC2GLT4_s18_vs_1029_8BO-N1-BDNA-1_2375WFLT3_s18.mutect2.whatshap.phased_custom.ann_snpEff.ann.vcf.gz.tbi | Feb 03, 2026 10:51 PM | |
| /annotation/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.filtered_custom.ann_snpEff.ann.vcf.gz | Feb 03, 2026 10:50 PM | |
| /annotation/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.filtered_custom.ann_snpEff.ann.vcf.gz.tbi | Feb 03, 2026 10:50 PM | |
| /reports/raw_qc/snpeff/mutect2/1029_8BO-T1-TDNA-1_23FC2GLT4_s18_vs_1029_8BO-N1-BDNA-1_2375WFLT3_s18/1029_8BO-T1-TDNA-1_23FC2GLT4_s18_vs_1029_8BO-N1-BDNA-1_2375WFLT3_s18.mutect2.whatshap.phased_custom.ann_snpEff.genes.txt | Feb 03, 2026 10:50 PM | |
| /reports/raw_qc/snpeff/mutect2/1029_8BO-T1-TDNA-1_23FC2GLT4_s18_vs_1029_8BO-N1-BDNA-1_2375WFLT3_s18/1029_8BO-T1-TDNA-1_23FC2GLT4_s18_vs_1029_8BO-N1-BDNA-1_2375WFLT3_s18.mutect2.whatshap.phased_custom.ann_snpEff.csv | Feb 03, 2026 10:50 PM | |
| /variant_calling/chip_variants/1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-N1-BDNA-1_2375WFLT3_s32.chip_candidates.vcf.gz | Feb 03, 2026 10:49 PM |