NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI (1029_56D-T1-TDNA-1_23FC2GLT4_s13_vs_1029_56D-N1-BDNA-1_2375WFLT3_s13) - sarek-tools-daq-8a99ba01 - Workflow Tracker

Runs
sarek-tools-daq-8a99ba01
Tasks
MSISENSOR2_MSI (1029_56D-T1-TDNA-1_23FC2GLT4_s13_vs_1029_56D-N1-BDNA-1_2375WFLT3_s13)

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Task Info

Status: succeeded
Hash: 0d66f4cab040
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI
Tag: 1029_56D-T1-TDNA-1_23FC2GLT4_s13_vs_1029_56D-N1-BDNA-1_2375WFLT3_s13
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 6a/2a480b
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/2a480baf0634ced7cf92982f541ac2
Native ID: nf-6a2a480baf0634ced7cf92982f541ac2-b39a7

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.5 / 64
Memory (peak / alloc): 8.4 GB / 128.0 GB
Process I/O (rchar / wchar): 97.9 GB / 2.2 MB
Disk I/O (read / write): 54.8 GB / 4.2 MB
Host: i-0529f30142c0a7759 ( on-demand)

Runtime

Submitted: Feb 03, 2026 5:31:23 PM
Completed: Feb 03, 2026 6:25:17 PM
Total Duration: 53m 53s

Phases

Queue: 1m 53s
Execution: 43m 21s
Stage/Unstage: 8m 39s

Attempt 1

Execution

Status: failed
Hash: b9/acfb4b
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/acfb4be1f821e8dc6e78a4ef6f5c8b
Native ID: nf-b9acfb4be1f821e8dc6e78a4ef6f5c8b-fe16c

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 32
Memory (peak / alloc): - / 64.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0119315c230dbdac8 ( spot)

Runtime

Submitted: Feb 03, 2026 5:19:35 PM
Completed: Feb 03, 2026 5:26:44 PM
Total Duration: 7m 8s

Phases

Queue: 15s
Execution: 6m 53s
Stage/Unstage: 0s