NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI (1029_3N0-T1-TDNA-1_23FC2GLT4_s09_vs_1029_3N0-N1-BDNA-1_2375WFLT3_s09) - sarek-tools-daq-8a99ba01 - Workflow Tracker

Runs
sarek-tools-daq-8a99ba01
Tasks
MSISENSOR2_MSI (1029_3N0-T1-TDNA-1_23FC2GLT4_s09_vs_1029_3N0-N1-BDNA-1_2375WFLT3_s09)

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Task Info

Status: succeeded
Hash: 19676830345b
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI
Tag: 1029_3N0-T1-TDNA-1_23FC2GLT4_s09_vs_1029_3N0-N1-BDNA-1_2375WFLT3_s09
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 8f/36e421
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/36e421de8dbd9e6a1511352b69c9a9
Native ID: nf-8f36e421de8dbd9e6a1511352b69c9a9-94356

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.5 / 64
Memory (peak / alloc): 5.5 GB / 128.0 GB
Process I/O (rchar / wchar): 95.2 GB / 2.2 MB
Disk I/O (read / write): 49.5 GB / 4.2 MB
Host: i-028121b46bf9ace49 ( on-demand)

Runtime

Submitted: Feb 03, 2026 5:31:46 PM
Completed: Feb 03, 2026 6:25:42 PM
Total Duration: 53m 55s

Phases

Queue: 40s
Execution: 41m 36s
Stage/Unstage: 11m 39s

Attempt 1

Execution

Status: failed
Hash: 9d/486de0
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/486de0dafad18348e43c83d4e99eac
Native ID: nf-9d486de0dafad18348e43c83d4e99eac-32433

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 32
Memory (peak / alloc): - / 64.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0d1763ff731713e18 ( spot)

Runtime

Submitted: Feb 03, 2026 5:21:17 PM
Completed: Feb 03, 2026 5:27:53 PM
Total Duration: 6m 35s

Phases

Queue: 1m 33s
Execution: 5m 2s
Stage/Unstage: 0s