NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI (1029_1G0-T1-TDNA-1_23FC2GLT4_s05_vs_1029_1G0-N1-BDNA-1_2375WFLT3_s05) - sarek-tools-daq-8a99ba01 - Workflow Tracker

Runs
sarek-tools-daq-8a99ba01
Tasks
MSISENSOR2_MSI (1029_1G0-T1-TDNA-1_23FC2GLT4_s05_vs_1029_1G0-N1-BDNA-1_2375WFLT3_s05)

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Task Info

Status: succeeded
Hash: 33cb6bb39fc8
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI
Tag: 1029_1G0-T1-TDNA-1_23FC2GLT4_s05_vs_1029_1G0-N1-BDNA-1_2375WFLT3_s05
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: db/cbcb0b
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/cbcb0b898430d81299a4b13442c94e
Native ID: nf-dbcbcb0b898430d81299a4b13442c94e-f096f

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.5 / 64
Memory (peak / alloc): 5.9 GB / 128.0 GB
Process I/O (rchar / wchar): 99.8 GB / 2.2 MB
Disk I/O (read / write): 66.6 GB / 4.2 MB
Host: i-071472c81a2474a43 ( on-demand)

Runtime

Submitted: Feb 03, 2026 5:31:44 PM
Completed: Feb 03, 2026 6:27:54 PM
Total Duration: 56m 9s

Phases

Queue: 1m 5s
Execution: 43m 49s
Stage/Unstage: 11m 15s

Attempt 1

Execution

Status: failed
Hash: ad/3c73c4
Exit Code: 137
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/3c73c4add6c258e459bec253e5f158
Native ID: nf-ad3c73c4add6c258e459bec253e5f158-3ded5

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 32
Memory (peak / alloc): - / 64.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0cc3ff183baa620de ( spot)

Runtime

Submitted: Feb 03, 2026 5:21:00 PM
Completed: Feb 03, 2026 5:31:43 PM
Total Duration: 10m 43s

Phases

Queue: 6m 18s
Execution: 4m 24s
Stage/Unstage: 0s