NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI (1029_8BO-T1-TDNA-1_23FC2GLT4_s18_vs_1029_8BO-N1-BDNA-1_2375WFLT3_s18) - sarek-tools-daq-8a99ba01 - Workflow Tracker

Runs
sarek-tools-daq-8a99ba01
Tasks
MSISENSOR2_MSI (1029_8BO-T1-TDNA-1_23FC2GLT4_s18_vs_1029_8BO-N1-BDNA-1_2375WFLT3_s18)

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Task Info

Status: succeeded
Hash: 3b6b009c8d5a
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI
Tag: 1029_8BO-T1-TDNA-1_23FC2GLT4_s18_vs_1029_8BO-N1-BDNA-1_2375WFLT3_s18
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 84/ff0a09
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/ff0a0958b9da20a86558c2f350d1ec
Native ID: nf-84ff0a0958b9da20a86558c2f350d1ec-d2031

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.7 / 64
Memory (peak / alloc): 2.6 GB / 128.0 GB
Process I/O (rchar / wchar): 74.8 GB / 2.2 MB
Disk I/O (read / write): 33.6 GB / 3.9 MB
Host: i-0a7e1acc83b3d3838 ( on-demand)

Runtime

Submitted: Feb 03, 2026 5:27:46 PM
Completed: Feb 03, 2026 6:04:00 PM
Total Duration: 36m 13s

Phases

Queue: 1m 1s
Execution: 29m 30s
Stage/Unstage: 5m 42s

Attempt 1

Execution

Status: failed
Hash: 49/033d80
Exit Code: 137
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/033d80b376cbfe15e5d10973d49685
Native ID: nf-49033d80b376cbfe15e5d10973d49685-89925

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 32
Memory (peak / alloc): - / 64.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-02bc0c9551a1945c5 ( spot)

Runtime

Submitted: Feb 03, 2026 5:19:44 PM
Completed: Feb 03, 2026 5:26:27 PM
Total Duration: 6m 43s

Phases

Queue: 2m 39s
Execution: 4m 3s
Stage/Unstage: 0s