NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (1029_3N0-T1-TDNA-1_23FC2GLT4_s09;SNP_GRCh38_hg38_wChr) - sarek-tools-daq-8a99ba01 - Workflow Tracker

Runs
sarek-tools-daq-8a99ba01
Tasks
BCFTOOLS_MPILEUP (1029_3N0-T1-TDNA-1_23FC2GLT4_s09;SNP_GRCh38_hg38_wChr)

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Task Info

Status: succeeded
Hash: 4a7a745d8ed4
Process: NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP
Tag: 1029_3N0-T1-TDNA-1_23FC2GLT4_s09;SNP_GRCh38_hg38_wChr
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: e3/b204de
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/b204de498d6b5f63da4c6d1fe46a59
Native ID: nf-e3b204de498d6b5f63da4c6d1fe46a59-2c512

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 4
Memory (peak / alloc): 569.7 MB / 4.0 GB
Process I/O (rchar / wchar): 213.6 GB / 13.1 MB
Disk I/O (read / write): 213.7 GB / 1.3 MB
Host: i-05e988c54a407cdb6 ( on-demand)

Runtime

Submitted: Feb 03, 2026 5:34:19 PM
Completed: Feb 03, 2026 6:03:46 PM
Total Duration: 29m 26s

Phases

Queue: 2s
Execution: 19m 48s
Stage/Unstage: 9m 36s

Attempt 1

Execution

Status: failed
Hash: ed/31665a
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/31665a07636a53575beaa90b71b641
Native ID: nf-ed31665a07636a53575beaa90b71b641-c8ebd

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 2.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0bfb6eee0753a6db8 ( spot)

Runtime

Submitted: Feb 03, 2026 5:13:41 PM
Completed: Feb 03, 2026 5:30:55 PM
Total Duration: 17m 13s

Phases

Queue: 1m 0s
Execution: 16m 13s
Stage/Unstage: 0s