NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI (1029_8OI-T1-TDNA-1_23FC2GLT4_s19_vs_1029_8OI-N1-BDNA-1_2375WFLT3_s19) - sarek-tools-daq-8a99ba01 - Workflow Tracker

Runs
sarek-tools-daq-8a99ba01
Tasks
MSISENSOR2_MSI (1029_8OI-T1-TDNA-1_23FC2GLT4_s19_vs_1029_8OI-N1-BDNA-1_2375WFLT3_s19)

Login

Task Info

Status: succeeded
Hash: 4b7c264aca4b
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI
Tag: 1029_8OI-T1-TDNA-1_23FC2GLT4_s19_vs_1029_8OI-N1-BDNA-1_2375WFLT3_s19
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 82/a6ff9a
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/a6ff9a36a8610e656181cd9d48015b
Native ID: nf-82a6ff9a36a8610e656181cd9d48015b-df95a

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.5 / 64
Memory (peak / alloc): 4.6 GB / 128.0 GB
Process I/O (rchar / wchar): 87.8 GB / 2.2 MB
Disk I/O (read / write): 39.8 GB / 4.1 MB
Host: i-04d2204a39806fbeb ( on-demand)

Runtime

Submitted: Feb 03, 2026 5:31:54 PM
Completed: Feb 03, 2026 6:18:12 PM
Total Duration: 46m 17s

Phases

Queue: 6s
Execution: 38m 7s
Stage/Unstage: 8m 4s

Attempt 1

Execution

Status: failed
Hash: a9/ef08e2
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/ef08e257191299fa5d607a2fa1c9ef
Native ID: nf-a9ef08e257191299fa5d607a2fa1c9ef-f017f

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 32
Memory (peak / alloc): - / 64.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0e2c98c1790fd71e5 ( spot)

Runtime

Submitted: Feb 03, 2026 5:22:35 PM
Completed: Feb 03, 2026 5:28:29 PM
Total Duration: 5m 53s

Phases

Queue: 1m 43s
Execution: 4m 10s
Stage/Unstage: 0s