NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI (1029_3OH-T1-TDNA-1_23FC2GLT4_s10_vs_1029_3OH-N1-BDNA-1_2375WFLT3_s10) - sarek-tools-daq-8a99ba01 - Workflow Tracker

Runs
sarek-tools-daq-8a99ba01
Tasks
MSISENSOR2_MSI (1029_3OH-T1-TDNA-1_23FC2GLT4_s10_vs_1029_3OH-N1-BDNA-1_2375WFLT3_s10)

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Task Info

Status: succeeded
Hash: 4c97649c1ad1
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI
Tag: 1029_3OH-T1-TDNA-1_23FC2GLT4_s10_vs_1029_3OH-N1-BDNA-1_2375WFLT3_s10
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 05/177f24
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/177f2466e373b092347ebdbb680c06
Native ID: nf-05177f2466e373b092347ebdbb680c06-1eac4

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.5 / 64
Memory (peak / alloc): 4.2 GB / 128.0 GB
Process I/O (rchar / wchar): 90.5 GB / 2.2 MB
Disk I/O (read / write): 52.2 GB / 4.1 MB
Host: i-0bf89b27e7bfdb647 ( on-demand)

Runtime

Submitted: Feb 03, 2026 5:27:51 PM
Completed: Feb 03, 2026 6:19:17 PM
Total Duration: 51m 25s

Phases

Queue: -1s
Execution: 38m 5s
Stage/Unstage: 13m 21s

Attempt 1

Execution

Status: failed
Hash: 92/dd3269
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/dd32694a20992ebfea9fbb7abe5e73
Native ID: nf-92dd32694a20992ebfea9fbb7abe5e73-c4ca0

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 32
Memory (peak / alloc): - / 64.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0ddf3146303b65ebc ( spot)

Runtime

Submitted: Feb 03, 2026 5:21:29 PM
Completed: Feb 03, 2026 5:27:24 PM
Total Duration: 5m 54s

Phases

Queue: 1m 11s
Execution: 4m 43s
Stage/Unstage: 0s