NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI (1029_0NX-T1-TDNA-1_23FC2GLT4_s04_vs_1029_0NX-N1-BDNA-1_2375WFLT3_s04) - sarek-tools-daq-8a99ba01 - Workflow Tracker

Runs
sarek-tools-daq-8a99ba01
Tasks
MSISENSOR2_MSI (1029_0NX-T1-TDNA-1_23FC2GLT4_s04_vs_1029_0NX-N1-BDNA-1_2375WFLT3_s04)

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Task Info

Status: succeeded
Hash: 5aef4167aad7
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI
Tag: 1029_0NX-T1-TDNA-1_23FC2GLT4_s04_vs_1029_0NX-N1-BDNA-1_2375WFLT3_s04
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 52/02be40
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/02be404d1667dd418e8c394a9e77aa
Native ID: nf-5202be404d1667dd418e8c394a9e77aa-a4f26

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.5 / 64
Memory (peak / alloc): 5.5 GB / 128.0 GB
Process I/O (rchar / wchar): 88.5 GB / 2.2 MB
Disk I/O (read / write): 36.3 GB / 4.1 MB
Host: i-0cab947a43fd46a68 ( on-demand)

Runtime

Submitted: Feb 03, 2026 5:31:43 PM
Completed: Feb 03, 2026 6:18:45 PM
Total Duration: 47m 1s

Phases

Queue: 1m 6s
Execution: 38m 30s
Stage/Unstage: 7m 25s

Attempt 1

Execution

Status: failed
Hash: b5/e7cfc6
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/e7cfc6d4704566fb4c890a8944f9d1
Native ID: nf-b5e7cfc6d4704566fb4c890a8944f9d1-c8b5d

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 32
Memory (peak / alloc): - / 64.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-00ae397a1df705fbf ( spot)

Runtime

Submitted: Feb 03, 2026 5:20:53 PM
Completed: Feb 03, 2026 5:27:47 PM
Total Duration: 6m 53s

Phases

Queue: 1m 17s
Execution: 5m 36s
Stage/Unstage: 0s