NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI (1029_032-T1-TDNA-1_23FC2GLT4_s01_vs_1029_032-N1-BDNA-1_2375WFLT3_s01) - sarek-tools-daq-8a99ba01 - Workflow Tracker

Runs
sarek-tools-daq-8a99ba01
Tasks
MSISENSOR2_MSI (1029_032-T1-TDNA-1_23FC2GLT4_s01_vs_1029_032-N1-BDNA-1_2375WFLT3_s01)

Login

Task Info

Status: succeeded
Hash: 76617018c88a
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI
Tag: 1029_032-T1-TDNA-1_23FC2GLT4_s01_vs_1029_032-N1-BDNA-1_2375WFLT3_s01
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 13/318c8b
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/318c8b9b2c700a45fc7ec0b40885b2
Native ID: nf-13318c8b9b2c700a45fc7ec0b40885b2-727d0

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.5 / 64
Memory (peak / alloc): 6.7 GB / 128.0 GB
Process I/O (rchar / wchar): 88.7 GB / 2.2 MB
Disk I/O (read / write): 51.4 GB / 4.1 MB
Host: i-0492bdb2f782b7ed5 ( on-demand)

Runtime

Submitted: Feb 03, 2026 5:27:45 PM
Completed: Feb 03, 2026 6:13:34 PM
Total Duration: 45m 48s

Phases

Queue: 5s
Execution: 39m 3s
Stage/Unstage: 6m 40s

Attempt 1

Execution

Status: failed
Hash: 9e/c8259a
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/c8259a2d5f3597b20e86c06e37f23f
Native ID: nf-9ec8259a2d5f3597b20e86c06e37f23f-be431

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 32
Memory (peak / alloc): - / 64.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-03942122a3dece378 ( spot)

Runtime

Submitted: Feb 03, 2026 5:19:11 PM
Completed: Feb 03, 2026 5:25:51 PM
Total Duration: 6m 39s

Phases

Queue: 50s
Execution: 5m 49s
Stage/Unstage: 0s