NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI (1029_2IN-T1-TDNA-1_23FC2GLT4_s07_vs_1029_2IN-N1-BDNA-1_2375WFLT3_s07) - sarek-tools-daq-8a99ba01 - Workflow Tracker

Runs
sarek-tools-daq-8a99ba01
Tasks
MSISENSOR2_MSI (1029_2IN-T1-TDNA-1_23FC2GLT4_s07_vs_1029_2IN-N1-BDNA-1_2375WFLT3_s07)

Login

Task Info

Status: succeeded
Hash: 8c1d143e835e
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI
Tag: 1029_2IN-T1-TDNA-1_23FC2GLT4_s07_vs_1029_2IN-N1-BDNA-1_2375WFLT3_s07
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: aa/a305b0
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/a305b0ab5fd383b2a4dfa251823d26
Native ID: nf-aaa305b0ab5fd383b2a4dfa251823d26-0d5db

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.5 / 64
Memory (peak / alloc): 4.4 GB / 128.0 GB
Process I/O (rchar / wchar): 87.2 GB / 2.2 MB
Disk I/O (read / write): 48.9 GB / 4.1 MB
Host: i-03d88f2c6d586d7f3 ( on-demand)

Runtime

Submitted: Feb 03, 2026 5:27:45 PM
Completed: Feb 03, 2026 6:13:18 PM
Total Duration: 45m 32s

Phases

Queue: 1m 8s
Execution: 37m 5s
Stage/Unstage: 7m 19s

Attempt 1

Execution

Status: failed
Hash: b3/e167d2
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b3/e167d2835abed842f48661b6a561e0
Native ID: nf-b3e167d2835abed842f48661b6a561e0-2ecb8

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 32
Memory (peak / alloc): - / 64.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-03942122a3dece378 ( spot)

Runtime

Submitted: Feb 03, 2026 5:19:23 PM
Completed: Feb 03, 2026 5:25:24 PM
Total Duration: 6m 0s

Phases

Queue: 38s
Execution: 5m 22s
Stage/Unstage: 0s