NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (1029_1H5-T1-TDNA-1_23FC2GLT4_s06;SNP_GRCh38_hg38_wChr) - sarek-tools-daq-8a99ba01 - Workflow Tracker

Runs
sarek-tools-daq-8a99ba01
Tasks
BCFTOOLS_MPILEUP (1029_1H5-T1-TDNA-1_23FC2GLT4_s06;SNP_GRCh38_hg38_wChr)

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Task Info

Status: succeeded
Hash: b2cb946108f7
Process: NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP
Tag: 1029_1H5-T1-TDNA-1_23FC2GLT4_s06;SNP_GRCh38_hg38_wChr
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 3d/d42687
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/d42687dd44a91b0642760dcfdcbbb3
Native ID: nf-3dd42687dd44a91b0642760dcfdcbbb3-d33c2

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 4
Memory (peak / alloc): 569.7 MB / 4.0 GB
Process I/O (rchar / wchar): 222.7 GB / 13.1 MB
Disk I/O (read / write): 222.5 GB / 1.3 MB
Host: i-071472c81a2474a43 ( on-demand)

Runtime

Submitted: Feb 03, 2026 5:34:15 PM
Completed: Feb 03, 2026 6:03:20 PM
Total Duration: 29m 4s

Phases

Queue: 2s
Execution: 20m 48s
Stage/Unstage: 8m 14s

Attempt 1

Execution

Status: failed
Hash: 82/a9f6b0
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/a9f6b027ee49f2cb8ebc08235115cd
Native ID: nf-82a9f6b027ee49f2cb8ebc08235115cd-729b4

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 2.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0bfb6eee0753a6db8 ( spot)

Runtime

Submitted: Feb 03, 2026 5:13:39 PM
Completed: Feb 03, 2026 5:30:29 PM
Total Duration: 16m 49s

Phases

Queue: 1m 4s
Execution: 15m 45s
Stage/Unstage: 0s