NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI (1029_5IX-T1-TDNA-1_23FC2GLT4_s14_vs_1029_5IX-N1-BDNA-1_2375WFLT3_s14) - sarek-tools-daq-8a99ba01 - Workflow Tracker

Runs
sarek-tools-daq-8a99ba01
Tasks
MSISENSOR2_MSI (1029_5IX-T1-TDNA-1_23FC2GLT4_s14_vs_1029_5IX-N1-BDNA-1_2375WFLT3_s14)

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Task Info

Status: succeeded
Hash: bfcf48ef1bca
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI
Tag: 1029_5IX-T1-TDNA-1_23FC2GLT4_s14_vs_1029_5IX-N1-BDNA-1_2375WFLT3_s14
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: c8/6d707c
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/6d707c29a5e32736a3d703fe020f69
Native ID: nf-c86d707c29a5e32736a3d703fe020f69-2b192

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.7 / 64
Memory (peak / alloc): 3.3 GB / 128.0 GB
Process I/O (rchar / wchar): 72.7 GB / 2.2 MB
Disk I/O (read / write): 29.8 GB / 3.9 MB
Host: i-06a1fde115f5137d9 ( on-demand)

Runtime

Submitted: Feb 03, 2026 5:27:52 PM
Completed: Feb 03, 2026 6:05:48 PM
Total Duration: 37m 55s

Phases

Queue: 2m 49s
Execution: 29m 24s
Stage/Unstage: 5m 42s

Attempt 1

Execution

Status: failed
Hash: 89/1e2528
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/1e2528148338a406670ff4c205646c
Native ID: nf-891e2528148338a406670ff4c205646c-dad72

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 32
Memory (peak / alloc): - / 64.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0ced088ed9e6a428c ( spot)

Runtime

Submitted: Feb 03, 2026 5:21:48 PM
Completed: Feb 03, 2026 5:27:20 PM
Total Duration: 5m 31s

Phases

Queue: 34s
Execution: 4m 57s
Stage/Unstage: 0s