NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI (1029_0DT-T1-TDNA-1_23FC2GLT4_s03_vs_1029_0DT-N1-BDNA-1_2375WFLT3_s03) - sarek-tools-daq-8a99ba01 - Workflow Tracker

Runs
sarek-tools-daq-8a99ba01
Tasks
MSISENSOR2_MSI (1029_0DT-T1-TDNA-1_23FC2GLT4_s03_vs_1029_0DT-N1-BDNA-1_2375WFLT3_s03)

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Task Info

Status: succeeded
Hash: c7edb28473ae
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI
Tag: 1029_0DT-T1-TDNA-1_23FC2GLT4_s03_vs_1029_0DT-N1-BDNA-1_2375WFLT3_s03
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 7c/d88453
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/d884535efb4aaa8be6d9fcc9361561
Native ID: nf-7cd884535efb4aaa8be6d9fcc9361561-a9513

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.6 / 64
Memory (peak / alloc): 4.4 GB / 128.0 GB
Process I/O (rchar / wchar): 80.0 GB / 2.2 MB
Disk I/O (read / write): 32.3 GB / 4.0 MB
Host: i-06cd48c0a1d93369b ( on-demand)

Runtime

Submitted: Feb 03, 2026 5:27:45 PM
Completed: Feb 03, 2026 6:08:21 PM
Total Duration: 40m 35s

Phases

Queue: 1m 1s
Execution: 33m 38s
Stage/Unstage: 5m 56s

Attempt 1

Execution

Status: failed
Hash: 62/9ef3dc
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/9ef3dce15438d99fbdcc8f37c9e15a
Native ID: nf-629ef3dce15438d99fbdcc8f37c9e15a-5ab9e

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 32
Memory (peak / alloc): - / 64.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-028db8fcdd605d875 ( spot)

Runtime

Submitted: Feb 03, 2026 5:19:18 PM
Completed: Feb 03, 2026 5:23:48 PM
Total Duration: 4m 29s

Phases

Queue: 10s
Execution: 4m 19s
Stage/Unstage: 0s