NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI (1029_8AV-T1-TDNA-1_23FC2GLT4_s17_vs_1029_8AV-N1-BDNA-1_2375WFLT3_s17) - sarek-tools-daq-8a99ba01 - Workflow Tracker

Runs
sarek-tools-daq-8a99ba01
Tasks
MSISENSOR2_MSI (1029_8AV-T1-TDNA-1_23FC2GLT4_s17_vs_1029_8AV-N1-BDNA-1_2375WFLT3_s17)

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Task Info

Status: succeeded
Hash: c804d98d2af7
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI
Tag: 1029_8AV-T1-TDNA-1_23FC2GLT4_s17_vs_1029_8AV-N1-BDNA-1_2375WFLT3_s17
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 2f/8b4f2c
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/8b4f2c8470c5aa5cc320c4c57920d5
Native ID: nf-2f8b4f2c8470c5aa5cc320c4c57920d5-dda0e

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.4 / 64
Memory (peak / alloc): 8.4 GB / 128.0 GB
Process I/O (rchar / wchar): 103.0 GB / 2.2 MB
Disk I/O (read / write): 54.8 GB / 4.2 MB
Host: i-000b7787de577a623 ( on-demand)

Runtime

Submitted: Feb 03, 2026 5:27:46 PM
Completed: Feb 03, 2026 6:25:00 PM
Total Duration: 57m 13s

Phases

Queue: 3m 32s
Execution: 45m 30s
Stage/Unstage: 8m 11s

Attempt 1

Execution

Status: failed
Hash: fd/79bb4b
Exit Code: 137
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/79bb4b5a2fd355cc4b3d87b644d6af
Native ID: nf-fd79bb4b5a2fd355cc4b3d87b644d6af-947f6

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 32
Memory (peak / alloc): - / 64.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-005a0bd34f5e5cbf9 ( spot)

Runtime

Submitted: Feb 03, 2026 5:19:41 PM
Completed: Feb 03, 2026 5:26:26 PM
Total Duration: 6m 44s

Phases

Queue: 2m 41s
Execution: 4m 3s
Stage/Unstage: 0s