NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI (1029_4J3-T1-TDNA-1_23FC2GLT4_s11_vs_1029_4J3-N1-BDNA-1_2375WFLT3_s11) - sarek-tools-daq-8a99ba01 - Workflow Tracker

Runs
sarek-tools-daq-8a99ba01
Tasks
MSISENSOR2_MSI (1029_4J3-T1-TDNA-1_23FC2GLT4_s11_vs_1029_4J3-N1-BDNA-1_2375WFLT3_s11)

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Task Info

Status: succeeded
Hash: d631fe8c811b
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI
Tag: 1029_4J3-T1-TDNA-1_23FC2GLT4_s11_vs_1029_4J3-N1-BDNA-1_2375WFLT3_s11
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: a2/bf5a67
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/bf5a67cef4d87cc554ce77ed4badda
Native ID: nf-a2bf5a67cef4d87cc554ce77ed4badda-4e2f1

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.5 / 64
Memory (peak / alloc): 5.3 GB / 128.0 GB
Process I/O (rchar / wchar): 93.7 GB / 2.2 MB
Disk I/O (read / write): 41.8 GB / 4.1 MB
Host: i-0d3240e02cd02299d ( on-demand)

Runtime

Submitted: Feb 03, 2026 5:31:47 PM
Completed: Feb 03, 2026 6:23:28 PM
Total Duration: 51m 40s

Phases

Queue: 16s
Execution: 40m 49s
Stage/Unstage: 10m 35s

Attempt 1

Execution

Status: failed
Hash: 36/052e30
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/052e30c058ae0e513e7c05c75e96ff
Native ID: nf-36052e30c058ae0e513e7c05c75e96ff-f7e65

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 32
Memory (peak / alloc): - / 64.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0fe7792f944f9d8b8 ( spot)

Runtime

Submitted: Feb 03, 2026 5:21:20 PM
Completed: Feb 03, 2026 5:28:15 PM
Total Duration: 6m 54s

Phases

Queue: 1m 35s
Execution: 5m 19s
Stage/Unstage: 0s