NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI (1029_7Y1-T1-TDNA-1_23FC2GLT4_s16_vs_1029_7Y1-N1-BDNA-1_2375WFLT3_s16) - sarek-tools-daq-8a99ba01 - Workflow Tracker

Runs
sarek-tools-daq-8a99ba01
Tasks
MSISENSOR2_MSI (1029_7Y1-T1-TDNA-1_23FC2GLT4_s16_vs_1029_7Y1-N1-BDNA-1_2375WFLT3_s16)

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Task Info

Status: succeeded
Hash: d82991825c4a
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI
Tag: 1029_7Y1-T1-TDNA-1_23FC2GLT4_s16_vs_1029_7Y1-N1-BDNA-1_2375WFLT3_s16
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 10/9c7ae0
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/9c7ae03efdd8a32fb026904c73cdae
Native ID: nf-109c7ae03efdd8a32fb026904c73cdae-4ffce

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.7 / 64
Memory (peak / alloc): 1.7 GB / 128.0 GB
Process I/O (rchar / wchar): 69.4 GB / 2.2 MB
Disk I/O (read / write): 27.6 GB / 3.8 MB
Host: i-019197989384d7af1 ( on-demand)

Runtime

Submitted: Feb 03, 2026 5:31:52 PM
Completed: Feb 03, 2026 6:07:10 PM
Total Duration: 35m 17s

Phases

Queue: 2m 0s
Execution: 27m 0s
Stage/Unstage: 6m 17s

Attempt 1

Execution

Status: failed
Hash: 00/6c9cd1
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/6c9cd148b85dd99c8f8dcc73bb288d
Native ID: nf-006c9cd148b85dd99c8f8dcc73bb288d-b6ea7

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 32
Memory (peak / alloc): - / 64.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0d1763ff731713e18 ( spot)

Runtime

Submitted: Feb 03, 2026 5:22:08 PM
Completed: Feb 03, 2026 5:28:04 PM
Total Duration: 5m 55s

Phases

Queue: 42s
Execution: 5m 13s
Stage/Unstage: 0s