NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI (1029_5O3-T1-TDNA-1_23FC2GLT4_s15_vs_1029_5O3-N1-BDNA-1_2375WFLT3_s15) - sarek-tools-daq-8a99ba01 - Workflow Tracker

Runs
sarek-tools-daq-8a99ba01
Tasks
MSISENSOR2_MSI (1029_5O3-T1-TDNA-1_23FC2GLT4_s15_vs_1029_5O3-N1-BDNA-1_2375WFLT3_s15)

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Task Info

Status: succeeded
Hash: dbce6ff6182f
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI
Tag: 1029_5O3-T1-TDNA-1_23FC2GLT4_s15_vs_1029_5O3-N1-BDNA-1_2375WFLT3_s15
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 8a/35f0aa
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/35f0aa76b776ed2077ef530c409d08
Native ID: nf-8a35f0aa76b776ed2077ef530c409d08-7ae0f

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.5 / 64
Memory (peak / alloc): 4.5 GB / 128.0 GB
Process I/O (rchar / wchar): 89.3 GB / 2.3 MB
Disk I/O (read / write): 39.1 GB / 4.1 MB
Host: i-011f433568bec7a20 ( on-demand)

Runtime

Submitted: Feb 03, 2026 5:31:24 PM
Completed: Feb 03, 2026 6:23:34 PM
Total Duration: 52m 9s

Phases

Queue: 1m 58s
Execution: 39m 14s
Stage/Unstage: 10m 57s

Attempt 1

Execution

Status: failed
Hash: 35/434831
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/434831e2f456c492b61aebac28487d
Native ID: nf-35434831e2f456c492b61aebac28487d-4d0eb

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 32
Memory (peak / alloc): - / 64.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-02d3c248b6f489b3e ( spot)

Runtime

Submitted: Feb 03, 2026 5:19:37 PM
Completed: Feb 03, 2026 5:26:38 PM
Total Duration: 7m 0s

Phases

Queue: 1m 32s
Execution: 5m 28s
Stage/Unstage: 0s