NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI (1029_1H5-T1-TDNA-1_23FC2GLT4_s06_vs_1029_1H5-N1-BDNA-1_2375WFLT3_s06) - sarek-tools-daq-8a99ba01 - Workflow Tracker

Runs
sarek-tools-daq-8a99ba01
Tasks
MSISENSOR2_MSI (1029_1H5-T1-TDNA-1_23FC2GLT4_s06_vs_1029_1H5-N1-BDNA-1_2375WFLT3_s06)

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Task Info

Status: succeeded
Hash: f2a4f7285344
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI
Tag: 1029_1H5-T1-TDNA-1_23FC2GLT4_s06_vs_1029_1H5-N1-BDNA-1_2375WFLT3_s06
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: bc/320141
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/3201412581d12f07f9bf460e960508
Native ID: nf-bc3201412581d12f07f9bf460e960508-ca17b

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.5 / 64
Memory (peak / alloc): 7.7 GB / 128.0 GB
Process I/O (rchar / wchar): 102.5 GB / 2.2 MB
Disk I/O (read / write): 63.9 GB / 4.2 MB
Host: i-048b9f65ddfd49c85 ( on-demand)

Runtime

Submitted: Feb 03, 2026 5:31:45 PM
Completed: Feb 03, 2026 6:26:46 PM
Total Duration: 55m 0s

Phases

Queue: -1s
Execution: 45m 46s
Stage/Unstage: 9m 15s

Attempt 1

Execution

Status: failed
Hash: 39/a80e27
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/a80e27502a98cef6bd7f67cc5d9d0d
Native ID: nf-39a80e27502a98cef6bd7f67cc5d9d0d-cf0b9

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 32
Memory (peak / alloc): - / 64.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-00ae397a1df705fbf ( spot)

Runtime

Submitted: Feb 03, 2026 5:21:09 PM
Completed: Feb 03, 2026 5:28:05 PM
Total Duration: 6m 55s

Phases

Queue: 1m 1s
Execution: 5m 54s
Stage/Unstage: 0s