succeeded NFCORE_SAREK:PREPARE_GENOME:MSISENSOR2_SCAN (Homo_sapiens_assembly38.fasta) 4m 0s 3s 3m 15s 42s 386.9 MB 105% 3.0 GB 1.5 GB 0 bytes 1.5 GB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_ALLELES (G1000_alleles_hg38.zip) 6s 4s - - 10.9 MB 106% 9.8 MB 30.0 MB 0 bytes 30.0 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_GC (GC_G1000_hg38.zip) 11s 4s 2s 5s 10.9 MB 105% 100.1 MB 345.6 MB 0 bytes 345.6 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_LOCI (G1000_loci_hg38.zip) 5s 3s - - 10.8 MB 100% 8.3 MB 33.1 MB 0 bytes 33.1 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_RT (RT_G1000_hg38.zip) 10s 3s 2s 5s 10.8 MB 104% 101.6 MB 387.4 MB 0 bytes 387.5 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38.bed) 6s 3s - - 5.3 MB 99% 4.6 MB 4.6 MB 0 bytes 4.6 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38;null) 4s 3s - - 6.3 MB 103% 6.0 MB 1.7 MB 0 bytes 1.7 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr15_81322899-81322948;null) 1m 40s 1m 38s - - 6.2 MB 105% 1.5 MB 392.9 KB 0 bytes 396.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr1_69091-70008;null) 1m 43s 1m 40s - - 6.3 MB 106% 1.6 MB 444.9 KB 0 bytes 448.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr22_46626800-46626961;null) 1m 42s 1m 40s - - 3.3 MB 134% 353.1 KB 77.4 KB 0 bytes 84.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr4_40123127-40123212;null) 1m 39s 1m 38s - - 6.2 MB 115% 1.5 MB 425.0 KB 0 bytes 432.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr9_114905828-114905899;null) 12s 10s - - 6.1 MB 119% 1.6 MB 439.2 KB 0 bytes 444.0 KB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_ANTITARGET (intervals) 27s 17s 9s 1s 255.5 MB 346% 117.1 MB 1.4 MB 0 bytes 1.4 MB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_REFERENCE (Homo_sapiens_assembly38.fasta) 1m 45s 24s 1m 6s 15s 272.1 MB 128% 5.9 GB 10.5 MB 0 bytes 10.5 MB 1
succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 4s 3s 0s 0s 0 bytes 213% 113.1 KB 38.4 KB 0 bytes 40.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 46s 16s 0s 29s 17.3 MB 101% 26.0 MB 207.0 KB 0 bytes 148.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:CALCULATECONTAMINATION (1029_032-N1-BDNA-1_2375WFLT3_s01) 10s 3s 7s 0s 647.5 MB 224% 97.0 MB 699.2 KB 0 bytes 700.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:CALCULATECONTAMINATION (1029_05O-N1-BDNA-1_2375WFLT3_s02) 9s 2s 6s 1s 512.7 MB 230% 97.0 MB 698.1 KB 0 bytes 700.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:CALCULATECONTAMINATION (1029_0DT-N1-BDNA-1_2375WFLT3_s03) 9s 3s 6s 0s 588.0 MB 225% 97.0 MB 699.2 KB 0 bytes 700.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:CALCULATECONTAMINATION (1029_0NX-N1-BDNA-1_2375WFLT3_s04) 10s 3s 6s 1s 406.0 MB 217% 97.1 MB 697.6 KB 0 bytes 700.0 KB 1
11460 items found |
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