NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (1029_BF2U-N1-BDNA-1_2375WFLT3_s27;SNP_GRCh38_hg38_wChr) - sarek-tools-sarek-aq-8a99ba01 - Workflow Tracker

Runs
sarek-tools-..aq-8a99ba01
Tasks
BCFTOOLS_MPILEUP (1029_BF2U-N1-BDNA-1_2375WFLT3_s27;SNP_GRCh38_hg38_wChr)

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Task Info

Status: succeeded
Hash: 59aa28bdb6aa
Process: NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP
Tag: 1029_BF2U-N1-BDNA-1_2375WFLT3_s27;SNP_GRCh38_hg38_wChr
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: e2/1a1424
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/1a14245793fcdb491fc0605aa5ca5c
Native ID: nf-e21a14245793fcdb491fc0605aa5ca5c-48533

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.2 / 4
Memory (peak / alloc): 568.4 MB / 4.0 GB
Process I/O (rchar / wchar): 20.2 GB / 11.7 MB
Disk I/O (read / write): 20.1 GB / 1.0 MB
Host: i-0b7c07aa272e58bfa ( on-demand)

Runtime

Submitted: Feb 03, 2026 5:32:26 PM
Completed: Feb 03, 2026 5:35:07 PM
Total Duration: 2m 40s

Phases

Queue: 6s
Execution: 1m 55s
Stage/Unstage: 39s

Attempt 1

Execution

Status: failed
Hash: 6f/827dc5
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/827dc58739f4f820bea4bd28460a5f
Native ID: nf-6f827dc58739f4f820bea4bd28460a5f-20bde

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 2.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0a1a1eeb54964e55f ( spot)

Runtime

Submitted: Feb 03, 2026 5:21:00 PM
Completed: Feb 03, 2026 5:22:24 PM
Total Duration: -

Phases

Queue: 18s
Execution: -
Stage/Unstage: -