NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (1029_BDOZ-N1-BDNA-1_2375WFLT3_s26;SNP_GRCh38_hg38_wChr) - sarek-tools-sarek-aq-8a99ba01 - Workflow Tracker

Runs
sarek-tools-..aq-8a99ba01
Tasks
BCFTOOLS_MPILEUP (1029_BDOZ-N1-BDNA-1_2375WFLT3_s26;SNP_GRCh38_hg38_wChr)

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Task Info

Status: succeeded
Hash: b28a48cb70de
Process: NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP
Tag: 1029_BDOZ-N1-BDNA-1_2375WFLT3_s26;SNP_GRCh38_hg38_wChr
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: ac/b0f50d
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/b0f50d038eb47629dab75bfa157d83
Native ID: nf-acb0f50d038eb47629dab75bfa157d83-b82a3

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.2 / 4
Memory (peak / alloc): 569.3 MB / 4.0 GB
Process I/O (rchar / wchar): 22.6 GB / 11.7 MB
Disk I/O (read / write): 22.2 GB / 1.1 MB
Host: i-03fbafb32475fb7a3 ( on-demand)

Runtime

Submitted: Feb 03, 2026 5:32:18 PM
Completed: Feb 03, 2026 5:35:24 PM
Total Duration: 3m 5s

Phases

Queue: 7s
Execution: 2m 17s
Stage/Unstage: 41s

Attempt 1

Execution

Status: failed
Hash: 3f/5cd142
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/5cd1421ec315151f7d9ad978ded6fc
Native ID: nf-3f5cd1421ec315151f7d9ad978ded6fc-1d0c5

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 2.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-09ba974db782574fe ( spot)

Runtime

Submitted: Feb 03, 2026 5:20:59 PM
Completed: Feb 03, 2026 5:22:23 PM
Total Duration: -

Phases

Queue: 19s
Execution: -
Stage/Unstage: -