succeeded NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed) 8s 4s - - 5.3 MB 108% 4.6 MB 4.6 MB 0 bytes 4.6 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity;null) 6s 5s - - 6.3 MB 105% 6.0 MB 1.7 MB 0 bytes 1.7 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr14_64122012-64122133;null) 1m 31s 1m 30s - - 6.2 MB 94% 1.5 MB 401.1 KB 0 bytes 408.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr1_69091-70008;null) 46s 45s - - 6.1 MB 69% 1.6 MB 442.7 KB 0 bytes 448.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr19_47340800-47341813;null) 1m 13s 1m 12s - - 3.1 MB 68% 394.9 KB 84.0 KB 0 bytes 88.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr4_30730753-30730788;null) 1m 30s 1m 29s - - 6.0 MB 78% 1.4 MB 422.1 KB 0 bytes 428.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr8_93795409-93795507;null) 1m 30s 1m 29s - - 6.0 MB 109% 1.6 MB 432.2 KB 0 bytes 440.0 KB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_ANTITARGET (intervals) 26s 17s 7s 2s 258.5 MB 376% 117.2 MB 1.4 MB 0 bytes 1.4 MB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_REFERENCE (Homo_sapiens_assembly38.fasta) 1m 46s 24s 1m 12s 10s 276.0 MB 129% 5.9 GB 10.5 MB 0 bytes 10.5 MB 1
succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 6s 4s 0s 1s 0 bytes 91% 167.2 KB 90.1 KB 0 bytes 92.0 KB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_HCC1599_rep1) 19m 41s 2s 16m 44s 2m 54s 905.5 MB 229% 412.4 GB 375.1 GB 0 bytes 25.6 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_HCC1599_rep2) 15m 26s 2s 13m 7s 2m 16s 853.3 MB 233% 302.3 GB 274.2 GB 0 bytes 18.7 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_HD789_NA12878_plate1) 19m 13s 3s 16m 26s 2m 43s 2.2 GB 224% 375.2 GB 341.4 GB 0 bytes 23.0 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_HD789_NA12878_plate2) 17m 24s 3s 14m 49s 2m 31s 875.0 MB 229% 342.6 GB 311.6 GB 0 bytes 21.3 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_MSI_High_rep1) 17m 20s 1m 24s 14m 11s 1m 44s 826.3 MB 223% 318.4 GB 294.6 GB 0 bytes 20.2 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_MSI_High_rep2) 14m 30s 17s 13m 20s 52s 825.9 MB 234% 320.7 GB 296.1 GB 8.2 MB 20.0 GB 2
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_NA02016) 17m 23s 2s 14m 47s 2m 33s 1.7 GB 230% 341.8 GB 310.7 GB 0 bytes 21.3 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_NA02016) 17m 32s 3s 14m 50s 2m 38s 861.1 MB 227% 348.5 GB 317.2 GB 0 bytes 21.8 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_NA07439) 16m 16s 3s 13m 54s 2m 18s 861.9 MB 228% 325.1 GB 297.2 GB 0 bytes 20.5 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_NA12273) 8m 18s 2s 6m 54s 1m 21s 722.9 MB 243% 160.2 GB 144.7 GB 0 bytes 9.9 GB 1
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