succeeded NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed) 6s 2s - - 5.4 MB 99% 4.6 MB 4.6 MB 0 bytes 4.6 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity;null) 17s 15s - - 6.1 MB 106% 6.0 MB 1.7 MB 0 bytes 1.7 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr14_64122012-64122133;null) 1m 21s 1m 19s - - 6.1 MB 87% 1.5 MB 401.1 KB 0 bytes 408.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr1_69091-70008;null) 17s 14s - - 6.1 MB 124% 1.6 MB 442.7 KB 0 bytes 448.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr19_47340800-47341813;null) 1m 15s 1m 14s - - 3.2 MB 94% 395.1 KB 84.0 KB 0 bytes 88.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr4_30730753-30730788;null) 1m 25s 1m 23s - - 6.3 MB 94% 1.4 MB 422.1 KB 0 bytes 428.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr8_93795409-93795507;null) 15s 13s - - 6.2 MB 103% 1.6 MB 432.2 KB 0 bytes 440.0 KB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_ANTITARGET (intervals) 5m 0s 4m 51s 8s 1s 258.6 MB 388% 117.1 MB 1.4 MB 0 bytes 1.4 MB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_REFERENCE (Homo_sapiens_assembly38.fasta) 1m 44s 20s 1m 14s 10s 277.6 MB 103% 5.9 GB 10.5 MB 0 bytes 10.5 MB 1
succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 11s 10s 0s 0s 0 bytes 89% 158.1 KB 90.1 KB 0 bytes 92.0 KB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_HCC1599_rep1) 21m 52s 2m 44s 17m 5s 2m 2s 894.1 MB 228% 412.4 GB 375.1 GB 0 bytes 25.6 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_HCC1599_rep2) 17m 5s 2m 43s 12m 47s 1m 34s 852.8 MB 235% 302.3 GB 274.2 GB 0 bytes 18.7 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_HD789_NA12878_plate1) 21m 35s 2m 37s 15m 40s 3m 17s 887.1 MB 230% 375.2 GB 341.4 GB 0 bytes 23.0 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_HD789_NA12878_plate2) 20m 18s 2m 18s 14m 52s 3m 7s 872.8 MB 224% 342.6 GB 311.6 GB 0 bytes 21.3 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_MSI_High_rep1) 16m 42s 2m 25s 13m 13s 1m 3s 813.5 MB 225% 318.4 GB 294.6 GB 0 bytes 20.2 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_MSI_High_rep2) 18m 3s 2m 45s 14m 17s 1m 0s 821.8 MB 219% 320.7 GB 296.1 GB 0 bytes 20.0 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_NA02016_rep1) 20m 13s 4m 20s 14m 15s 1m 37s 869.4 MB 232% 341.8 GB 310.7 GB 0 bytes 21.3 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_NA02016_rep2) 20m 16s 4m 19s 14m 38s 1m 18s 848.0 MB 233% 348.5 GB 317.2 GB 0 bytes 21.8 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_NA07439) 20m 0s 4m 18s 13m 45s 1m 56s 860.9 MB 231% 325.1 GB 297.2 GB 0 bytes 20.5 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_NA12273) 11m 48s 4m 18s 6m 47s 42s 722.7 MB 242% 160.2 GB 144.7 GB 0 bytes 9.9 GB 1
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