succeeded NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed) 7s 4s - - 5.5 MB 102% 4.6 MB 4.6 MB 0 bytes 4.6 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity;null) 6s 4s - - 5.9 MB 101% 6.0 MB 1.7 MB 0 bytes 1.7 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr14_64122012-64122133;null) 8s 6s - - 6.2 MB 114% 1.5 MB 401.1 KB 0 bytes 408.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr1_69091-70008;null) 8s 6s - - 6.0 MB 99% 1.6 MB 442.7 KB 0 bytes 448.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr19_47340800-47341813;null) 7s 6s - - 3.2 MB 128% 390.6 KB 84.1 KB 0 bytes 88.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr4_30730753-30730788;null) 8s 6s - - 6.3 MB 124% 1.4 MB 422.1 KB 0 bytes 428.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr8_93795409-93795507;null) 5s 4s - - 6.2 MB 106% 1.5 MB 432.2 KB 0 bytes 440.0 KB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_ANTITARGET (intervals) 39s 29s 9s 1s 261.0 MB 164% 117.1 MB 1.4 MB 0 bytes 1.4 MB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_REFERENCE (Homo_sapiens_assembly38.fasta) 1m 29s 19s 58s 12s 277.7 MB 113% 5.9 GB 10.5 MB 0 bytes 10.5 MB 1
succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 5s 4s 0s 0s 0 bytes 146% 159.8 KB 90.1 KB 0 bytes 92.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 1m 17s 16s 2s 58s 26.4 MB 100% 166.3 MB 540.4 KB 172.0 KB 380.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:CALCULATECONTAMINATION (gDNA_TMB_13_WT_01_gDNA_01_B23H3TCLT3_1) 10s 3s 6s 1s 458.7 MB 229% 97.0 MB 697.6 KB 0 bytes 700.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:CALCULATECONTAMINATION (gDNA_TMB_13_WT_01_gDNA_01_B23H3TCLT3_2) 10s 3s 6s 1s 636.1 MB 230% 97.0 MB 697.5 KB 0 bytes 700.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:CALCULATECONTAMINATION (gDNA_TMB_26_WT_02_gDNA_01_B23H3TCLT3_1) 11s 4s 6s 1s 498.7 MB 228% 97.0 MB 698.6 KB 0 bytes 700.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:CALCULATECONTAMINATION (gDNA_TMB_26_WT_02_gDNA_01_B23H3TCLT3_2) 11s 3s 7s 1s 720.4 MB 219% 97.0 MB 698.7 KB 0 bytes 700.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:CALCULATECONTAMINATION (HCC1599BL_c_01_gDNA_0001_B23H3TCLT3_1) 11s 3s 7s 1s 482.0 MB 233% 97.0 MB 698.8 KB 0 bytes 700.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:CALCULATECONTAMINATION (HCC1599BL_c_01_gDNA_0001_B23H3TCLT3_2) 9s 2s 7s 0s 442.0 MB 213% 97.0 MB 698.8 KB 0 bytes 700.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:CALCULATECONTAMINATION (NA02016_c_01_gDNA_01_B23H3TCLT3_1) 9s 2s 6s 1s 532.4 MB 229% 97.0 MB 698.2 KB 0 bytes 700.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:CALCULATECONTAMINATION (NA02016_c_01_gDNA_01_B23H3TCLT3_2) 12s 3s 7s 2s 478.5 MB 240% 97.0 MB 698.7 KB 0 bytes 700.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:CALCULATECONTAMINATION (NA07439_c_01_gDNA_01_B23H3TCLT3_1) 10s 2s 7s 1s 454.4 MB 233% 97.0 MB 696.4 KB 0 bytes 700.0 KB 1
21791 items found |
1 2 3 ... 1089 1090