succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 57s 55s 0s 1s 0 bytes 188% 69.6 KB 1.1 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 4s 2s 0s 1s 18.8 MB 95% 2.1 MB 5.6 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (659_6i-N1-BDNA-1_B23KFG5LT4_1) 15s 1s 5s 8s 1.1 GB 7470% 1.2 GB 4.5 MB 28.1 MB 27.8 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (659_6i-N1-BDNA-1_B23KFG5LT4_1) 11m 35s 59s 8m 4s 2m 31s 1.7 GB 1150% 98.5 GB 30.9 MB 30.2 GB 719.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BCFTOOLS_STRIP_FILTER (659_6i-N1-BDNA-1_B23KFG5LT4_1;tnseq) 7s 5s - - 19.1 MB 2187% 127.7 KB 24.4 KB 0 bytes 32.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (659_6i-N1-BDNA-1_B23KFG5LT4_1) 19s 2s 7s 9s 43.5 MB 287% 3.4 GB 3.3 MB 0 bytes 3.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (659_6i-N1-BDNA-1_B23KFG5LT4_1) 4s 2s - - 16.7 MB 2562% 24.7 MB 24.7 MB 0 bytes 24.7 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_NORM (chip_pon) 1m 20s 58s 9s 12s 30.5 MB 122% 4.0 GB 5.5 MB 0 bytes 5.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_SORT (chip_pon) 1m 30s 1m 28s 1s 1s 21.2 MB 1659% 43.8 MB 44.1 MB 0 bytes 44.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_NORM (659_6i-N1-BDNA-1_B23KFG5LT4_1) 19s 3s 7s 8s 42.8 MB 263% 3.5 GB 2.0 MB 0 bytes 2.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_SORT (659_6i-N1-BDNA-1_B23KFG5LT4_1) 4s 2s - - 21.5 MB 3557% 8.0 MB 8.0 MB 0 bytes 8.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:PRE_FILTER_CHIP_CANDIDATES (659_6i-N1-BDNA-1_B23KFG5LT4_1) 9s 4s 1s 3s 79.1 MB 1129% 22.7 MB 3.4 MB 0 bytes 3.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SCORE_CHIP_VARIANTS (659_6i-N1-BDNA-1_B23KFG5LT4_1) 5s 1s 1s 2s 189.0 MB 1005% 20.6 MB 4.0 MB 0 bytes 4.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SENTIEON_GENOTYPE (659_6i-N1-BDNA-1_B23KFG5LT4_1) 3m 35s 17s 3s 3m 14s 881.5 MB 537% 164.6 MB 302.7 KB 165.6 MB 92.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TABIX_GERMLINE (659_6i-N1-BDNA-1_B23KFG5LT4_1;sentieon_haplotyper_rf) 3s 2s - - 9.5 MB 125% 1.6 MB 153.6 KB 0 bytes 156.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TRANSFER_CALLER_AD (659_6i-N1-BDNA-1_B23KFG5LT4_1) 20s 10s 1s 8s 45.1 MB 394% 19.1 MB 3.8 MB 4.0 MB 3.9 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (659_6i-N1-BDNA-1_B23KFG5LT4_1;tnseq) 1m 15s 7s 1m 5s 3s 6.4 GB 346% 643.1 MB 17.1 MB 0 bytes 14.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:TABIX_BGZIPTABIX (659_6i-N1-BDNA-1_B23KFG5LT4_1;tnseq) 7s 6s 1s 0s 6.1 MB 90% 15.2 MB 2.6 MB 0 bytes 2.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_CHIP_PON (659_6i-N1-BDNA-1_B23KFG5LT4_1) 8s 4s 1s 2s 388.0 MB 857% 23.0 MB 3.4 MB 0 bytes 3.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_GERMLINE (659_6i-N1-BDNA-1_B23KFG5LT4_1) 20s 17s 1s 1s 116.9 MB 653% 19.3 MB 3.3 MB 0 bytes 3.3 MB 1
257 items found |
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