succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 53s 52s 0s 0s 0 bytes 225% 105.7 KB 1.1 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 3s 1s 0s 1s 18.6 MB 97% 2.1 MB 5.6 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (659_SP-N1-BDNA-1_B23KFG5LT4_1) 14s 1s 3s 9s 622.2 MB 4469% 1.2 GB 4.6 MB 0 bytes 27.9 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (659_SP-N1-BDNA-1_B23KFG5LT4_1) 11m 51s 41s 8m 31s 2m 38s 1.7 GB 1148% 100.3 GB 32.7 MB 31.1 GB 721.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BCFTOOLS_STRIP_FILTER (659_SP-N1-BDNA-1_B23KFG5LT4_1;tnseq) 4s 3s - - 10.9 MB 1211% 126.2 KB 23.9 KB 0 bytes 32.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (659_SP-N1-BDNA-1_B23KFG5LT4_1) 20s 2s 7s 10s 37.4 MB 278% 3.4 GB 3.5 MB 0 bytes 3.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (659_SP-N1-BDNA-1_B23KFG5LT4_1) 3s 1s - - 22.0 MB 3680% 26.0 MB 26.0 MB 0 bytes 26.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_NORM (chip_pon) 2m 20s 2m 1s 8s 10s 46.6 MB 261% 4.0 GB 5.5 MB 659.6 MB 5.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_SORT (chip_pon) 7s 4s 2s 1s 134.9 MB 588% 43.8 MB 44.1 MB 0 bytes 44.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_NORM (659_SP-N1-BDNA-1_B23KFG5LT4_1) 19s 2s 7s 9s 44.2 MB 285% 3.5 GB 2.0 MB 0 bytes 2.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_SORT (659_SP-N1-BDNA-1_B23KFG5LT4_1) 3s 1s - - 20.9 MB 4788% 8.2 MB 8.2 MB 0 bytes 8.2 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:PRE_FILTER_CHIP_CANDIDATES (659_SP-N1-BDNA-1_B23KFG5LT4_1) 8s 5s 1s 1s 77.2 MB 1092% 23.3 MB 3.6 MB 0 bytes 3.7 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SCORE_CHIP_VARIANTS (659_SP-N1-BDNA-1_B23KFG5LT4_1) 4s 1s 1s 1s 230.9 MB 1045% 21.0 MB 4.2 MB 0 bytes 4.2 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SENTIEON_GENOTYPE (659_SP-N1-BDNA-1_B23KFG5LT4_1) 4m 1s 10s 1s 3m 49s 306.1 MB 139% 48.2 MB 297.9 KB 54.5 MB 84.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TABIX_GERMLINE (659_SP-N1-BDNA-1_B23KFG5LT4_1;sentieon_haplotyper_rf) 4s 2s - - 8.8 MB 135% 1.7 MB 155.1 KB 0 bytes 160.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TRANSFER_CALLER_AD (659_SP-N1-BDNA-1_B23KFG5LT4_1) 17s 5s 1s 10s 32.5 MB 3099% 19.5 MB 4.1 MB 3.9 MB 4.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (659_SP-N1-BDNA-1_B23KFG5LT4_1;tnseq) 1m 16s 2s 1m 12s 2s 11.0 GB 817% 641.2 MB 17.8 MB 0 bytes 14.9 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:TABIX_BGZIPTABIX (659_SP-N1-BDNA-1_B23KFG5LT4_1;tnseq) 3s 1s - - 6.1 MB 102% 16.0 MB 2.7 MB 0 bytes 2.7 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_CHIP_PON (659_SP-N1-BDNA-1_B23KFG5LT4_1) 6s 1s 2s 2s 375.8 MB 796% 23.3 MB 3.6 MB 0 bytes 3.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_GERMLINE (659_SP-N1-BDNA-1_B23KFG5LT4_1) 5s 2s 1s 1s 119.8 MB 1328% 19.7 MB 3.5 MB 0 bytes 3.5 MB 1
253 items found |
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