succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 31s 29s 0s 1s 0 bytes 102% 125.2 KB 1.1 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 4s 2s 0s 1s 18.7 MB 83% 2.1 MB 5.7 KB 4.3 MB 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (659_b7Z-N1-BDNA-1_B23KFG5LT4_1) 16s 1s 5s 9s 1.1 GB 7842% 1.1 GB 4.2 MB 15.2 MB 27.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (659_b7Z-N1-BDNA-1_B23KFG5LT4_1) 10m 19s 1m 12s 6m 51s 2m 15s 1.5 GB 1145% 90.1 GB 27.2 MB 27.4 GB 715.9 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BCFTOOLS_STRIP_FILTER (659_b7Z-N1-BDNA-1_B23KFG5LT4_1;tnseq) 5s 3s - - 9.2 MB 1216% 125.0 KB 22.8 KB 0 bytes 32.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (659_b7Z-N1-BDNA-1_B23KFG5LT4_1) 21s 3s 8s 9s 41.2 MB 266% 3.4 GB 3.1 MB 0 bytes 3.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (659_b7Z-N1-BDNA-1_B23KFG5LT4_1) 4s 2s - - 22.2 MB 2784% 22.5 MB 22.5 MB 0 bytes 22.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_NORM (chip_pon) 53s 35s 8s 9s 49.0 MB 270% 4.0 GB 5.5 MB 158.5 MB 5.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_SORT (chip_pon) 6s 4s - - 21.8 MB 1655% 43.8 MB 44.1 MB 0 bytes 44.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_NORM (659_b7Z-N1-BDNA-1_B23KFG5LT4_1) 20s 3s 7s 9s 37.6 MB 273% 3.5 GB 2.0 MB 0 bytes 2.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_SORT (659_b7Z-N1-BDNA-1_B23KFG5LT4_1) 4s 2s - - 20.9 MB 3312% 7.9 MB 7.9 MB 0 bytes 7.9 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:PRE_FILTER_CHIP_CANDIDATES (659_b7Z-N1-BDNA-1_B23KFG5LT4_1) 7s 3s 2s 1s 77.5 MB 334% 21.9 MB 3.2 MB 0 bytes 3.2 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SCORE_CHIP_VARIANTS (659_b7Z-N1-BDNA-1_B23KFG5LT4_1) 9s 5s 1s 2s 189.6 MB 1095% 20.0 MB 3.7 MB 0 bytes 3.7 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SENTIEON_GENOTYPE (659_b7Z-N1-BDNA-1_B23KFG5LT4_1) 5m 45s 1m 3s 1s 4m 40s 278.2 MB 99% 41.2 MB 286.1 KB 36.8 MB 64.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TABIX_GERMLINE (659_b7Z-N1-BDNA-1_B23KFG5LT4_1;sentieon_haplotyper_rf) 6s 5s - - 9.3 MB 124% 1.6 MB 154.6 KB 0 bytes 156.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TRANSFER_CALLER_AD (659_b7Z-N1-BDNA-1_B23KFG5LT4_1) 21s 8s 1s 11s 16.1 MB 477% 18.3 MB 3.6 MB 3.6 MB 3.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (659_b7Z-N1-BDNA-1_B23KFG5LT4_1;tnseq) 1m 20s 2s 1m 16s 2s 5.1 GB 214% 641.0 MB 16.0 MB 0 bytes 13.2 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:TABIX_BGZIPTABIX (659_b7Z-N1-BDNA-1_B23KFG5LT4_1;tnseq) 6s 4s - - 5.9 MB 111% 14.0 MB 2.4 MB 0 bytes 2.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_CHIP_PON (659_b7Z-N1-BDNA-1_B23KFG5LT4_1) 8s 3s 2s 2s 386.5 MB 263% 22.5 MB 3.1 MB 0 bytes 3.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_GERMLINE (659_b7Z-N1-BDNA-1_B23KFG5LT4_1) 8s 5s 1s 1s 116.0 MB 661% 18.8 MB 3.1 MB 0 bytes 3.1 MB 1
255 items found |
1 2 3 ... 12 13