succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 23s 21s 0s 1s 0 bytes 105% 124.0 KB 1.1 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 3s 1s 0s 1s 17.2 MB 99% 2.1 MB 5.7 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (659_bKP-N1-BDNA-1_B23KFG5LT4_1) 18s 5s 2s 10s 146.8 MB 1221% 756.6 MB 4.2 MB 0 bytes 27.7 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (659_bKP-N1-BDNA-1_B23KFG5LT4_1) 10m 15s 54s 7m 0s 2m 20s 1.6 GB 1147% 91.9 GB 27.9 MB 28.0 GB 716.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BCFTOOLS_STRIP_FILTER (659_bKP-N1-BDNA-1_B23KFG5LT4_1;tnseq) 7s 5s - - 3.2 MB 2230% 125.5 KB 22.3 KB 0 bytes 32.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (659_bKP-N1-BDNA-1_B23KFG5LT4_1) 20s 2s 8s 9s 37.6 MB 274% 3.4 GB 3.2 MB 0 bytes 3.2 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (659_bKP-N1-BDNA-1_B23KFG5LT4_1) 3s 1s 1s 1s 20.6 MB 2675% 23.3 MB 23.3 MB 0 bytes 23.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_NORM (chip_pon) 54s 37s 8s 8s 47.9 MB 272% 4.0 GB 5.5 MB 710.9 MB 5.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_SORT (chip_pon) 10s 7s 1s 2s 128.0 MB 203% 43.8 MB 44.1 MB 0 bytes 44.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_NORM (659_bKP-N1-BDNA-1_B23KFG5LT4_1) 19s 2s 7s 9s 43.1 MB 270% 3.5 GB 1.9 MB 0 bytes 2.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_SORT (659_bKP-N1-BDNA-1_B23KFG5LT4_1) 3s 1s - - 22.3 MB 3813% 7.7 MB 7.8 MB 0 bytes 7.8 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:PRE_FILTER_CHIP_CANDIDATES (659_bKP-N1-BDNA-1_B23KFG5LT4_1) 8s 4s 1s 2s 18.0 MB 1191% 22.3 MB 3.3 MB 0 bytes 3.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SCORE_CHIP_VARIANTS (659_bKP-N1-BDNA-1_B23KFG5LT4_1) 5s 1s 1s 2s 190.4 MB 1047% 20.3 MB 3.9 MB 0 bytes 3.9 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SENTIEON_GENOTYPE (659_bKP-N1-BDNA-1_B23KFG5LT4_1) 7m 6s 55s 1s 6m 9s 214.8 MB 87% 62.7 MB 283.3 KB 65.3 MB 60.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TABIX_GERMLINE (659_bKP-N1-BDNA-1_B23KFG5LT4_1;sentieon_haplotyper_rf) 6s 4s - - 9.6 MB 115% 1.6 MB 152.1 KB 0 bytes 156.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TRANSFER_CALLER_AD (659_bKP-N1-BDNA-1_B23KFG5LT4_1) 14s 2s 1s 10s 37.1 MB 456% 18.5 MB 3.7 MB 3.8 MB 3.7 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (659_bKP-N1-BDNA-1_B23KFG5LT4_1;tnseq) 1m 14s 2s 1m 9s 3s 9.5 GB 680% 641.0 MB 16.5 MB 90.8 MB 13.7 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:TABIX_BGZIPTABIX (659_bKP-N1-BDNA-1_B23KFG5LT4_1;tnseq) 7s 5s - - 5.9 MB 112% 14.6 MB 2.5 MB 0 bytes 2.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_CHIP_PON (659_bKP-N1-BDNA-1_B23KFG5LT4_1) 12s 7s 3s 1s 387.5 MB 258% 22.7 MB 3.2 MB 0 bytes 3.2 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_GERMLINE (659_bKP-N1-BDNA-1_B23KFG5LT4_1) 8s 4s 1s 2s 115.3 MB 654% 18.9 MB 3.2 MB 0 bytes 3.2 MB 1
253 items found |
1 2 3 ... 12 13