succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 21s 19s 0s 1s 0 bytes 100% 125.3 KB 1.1 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 12s 10s 0s 1s 18.1 MB 101% 2.1 MB 5.7 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (659_bMa-N1-BDNA-1_B23KFG5LT4_1) 15s 1s 3s 10s 618.8 MB 3583% 1.1 GB 4.2 MB 0 bytes 27.7 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (659_bMa-N1-BDNA-1_B23KFG5LT4_1) 9m 46s 39s 6m 46s 2m 20s 1.5 GB 1144% 92.4 GB 27.5 MB 28.1 GB 716.2 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BCFTOOLS_STRIP_FILTER (659_bMa-N1-BDNA-1_B23KFG5LT4_1;tnseq) 5s 3s - - 10.5 MB 991% 124.4 KB 22.2 KB 0 bytes 32.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (659_bMa-N1-BDNA-1_B23KFG5LT4_1) 19s 2s 7s 9s 43.1 MB 288% 3.4 GB 3.1 MB 0 bytes 3.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (659_bMa-N1-BDNA-1_B23KFG5LT4_1) 3s 1s 1s 1s 24.4 MB 2850% 23.0 MB 22.9 MB 0 bytes 23.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_NORM (chip_pon) 57s 37s 10s 9s 28.0 MB 123% 4.0 GB 5.5 MB 0 bytes 5.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_SORT (chip_pon) 10s 7s 1s 2s 20.9 MB 1660% 43.8 MB 44.1 MB 0 bytes 44.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_NORM (659_bMa-N1-BDNA-1_B23KFG5LT4_1) 19s 2s 7s 9s 37.6 MB 281% 3.5 GB 2.0 MB 0 bytes 2.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_SORT (659_bMa-N1-BDNA-1_B23KFG5LT4_1) 4s 2s - - 20.7 MB 5010% 7.9 MB 7.9 MB 0 bytes 7.9 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:PRE_FILTER_CHIP_CANDIDATES (659_bMa-N1-BDNA-1_B23KFG5LT4_1) 7s 2s 2s 2s 77.7 MB 332% 22.0 MB 3.2 MB 0 bytes 3.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SCORE_CHIP_VARIANTS (659_bMa-N1-BDNA-1_B23KFG5LT4_1) 5s 2s 1s 1s 207.5 MB 1030% 20.1 MB 3.8 MB 0 bytes 3.8 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SENTIEON_GENOTYPE (659_bMa-N1-BDNA-1_B23KFG5LT4_1) 6m 47s 37s 1s 6m 8s 287.5 MB 102% 26.2 MB 281.9 KB 26.1 MB 56.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TABIX_GERMLINE (659_bMa-N1-BDNA-1_B23KFG5LT4_1;sentieon_haplotyper_rf) 7s 6s - - 9.2 MB 121% 1.6 MB 152.0 KB 0 bytes 156.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TRANSFER_CALLER_AD (659_bMa-N1-BDNA-1_B23KFG5LT4_1) 14s 2s 1s 10s 32.9 MB 3112% 18.3 MB 3.6 MB 3.3 MB 3.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (659_bMa-N1-BDNA-1_B23KFG5LT4_1;tnseq) 1m 19s 8s 1m 9s 2s 7.8 GB 528% 641.0 MB 16.3 MB 73.1 MB 13.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:TABIX_BGZIPTABIX (659_bMa-N1-BDNA-1_B23KFG5LT4_1;tnseq) 8s 7s 1s 0s 6.2 MB 84% 14.3 MB 2.4 MB 0 bytes 2.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_CHIP_PON (659_bMa-N1-BDNA-1_B23KFG5LT4_1) 7s 2s 2s 2s 386.5 MB 253% 22.6 MB 3.2 MB 0 bytes 3.2 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_GERMLINE (659_bMa-N1-BDNA-1_B23KFG5LT4_1) 6s 2s 1s 2s 115.3 MB 354% 18.8 MB 3.1 MB 0 bytes 3.1 MB 1
255 items found |
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