succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 14s 12s 0s 1s 0 bytes 94% 125.3 KB 1.1 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 4s 2s 0s 1s 18.3 MB 100% 2.1 MB 5.7 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (659_bNS-N1-BDNA-1_B23KFG5LT4_1) 17s 3s 5s 8s 1.1 GB 7730% 1.2 GB 4.3 MB 20.9 MB 27.7 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (659_bNS-N1-BDNA-1_B23KFG5LT4_1) 9m 8s 26s 6m 23s 2m 18s 1.4 GB 1141% 84.2 GB 26.9 MB 25.2 GB 715.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BCFTOOLS_STRIP_FILTER (659_bNS-N1-BDNA-1_B23KFG5LT4_1;tnseq) 7s 5s - - 18.7 MB 2351% 127.9 KB 24.6 KB 0 bytes 32.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (659_bNS-N1-BDNA-1_B23KFG5LT4_1) 19s 2s 7s 9s 37.3 MB 281% 3.4 GB 3.1 MB 0 bytes 3.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (659_bNS-N1-BDNA-1_B23KFG5LT4_1) 4s 2s - - 15.9 MB 2717% 22.1 MB 22.1 MB 0 bytes 22.2 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_NORM (chip_pon) 37s 20s 7s 9s 27.0 MB 115% 4.0 GB 5.5 MB 0 bytes 5.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_SORT (chip_pon) 2m 0s 1m 57s 1s 2s 24.6 MB 1570% 43.8 MB 44.1 MB 0 bytes 44.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_NORM (659_bNS-N1-BDNA-1_B23KFG5LT4_1) 19s 2s 7s 9s 37.7 MB 285% 3.5 GB 2.0 MB 0 bytes 2.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_SORT (659_bNS-N1-BDNA-1_B23KFG5LT4_1) 4s 2s - - 16.8 MB 3529% 7.9 MB 7.9 MB 0 bytes 7.9 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:PRE_FILTER_CHIP_CANDIDATES (659_bNS-N1-BDNA-1_B23KFG5LT4_1) 6s 3s 2s 0s 77.6 MB 336% 21.9 MB 3.2 MB 0 bytes 3.2 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SCORE_CHIP_VARIANTS (659_bNS-N1-BDNA-1_B23KFG5LT4_1) 5s 2s 1s 1s 213.4 MB 1093% 20.0 MB 3.7 MB 0 bytes 3.7 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SENTIEON_GENOTYPE (659_bNS-N1-BDNA-1_B23KFG5LT4_1) 8m 31s 28s 2s 8m 0s 914.5 MB 419% 172.2 MB 303.0 KB 184.7 MB 96.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TABIX_GERMLINE (659_bNS-N1-BDNA-1_B23KFG5LT4_1;sentieon_haplotyper_rf) 6s 5s - - 9.3 MB 125% 1.6 MB 151.7 KB 0 bytes 156.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TRANSFER_CALLER_AD (659_bNS-N1-BDNA-1_B23KFG5LT4_1) 16s 5s 1s 9s 4.9 MB 752% 18.7 MB 3.6 MB 3.7 MB 3.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (659_bNS-N1-BDNA-1_B23KFG5LT4_1;tnseq) 1m 11s 7s 1m 1s 3s 7.2 GB 285% 643.0 MB 16.2 MB 0 bytes 13.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:TABIX_BGZIPTABIX (659_bNS-N1-BDNA-1_B23KFG5LT4_1;tnseq) 6s 4s - - 6.2 MB 103% 14.2 MB 2.4 MB 0 bytes 2.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_CHIP_PON (659_bNS-N1-BDNA-1_B23KFG5LT4_1) 7s 3s 3s 0s 386.6 MB 256% 22.5 MB 3.1 MB 0 bytes 3.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_GERMLINE (659_bNS-N1-BDNA-1_B23KFG5LT4_1) 8s 5s 1s 1s 115.8 MB 682% 18.8 MB 3.1 MB 0 bytes 3.1 MB 1
255 items found |
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