659_bTo_pair.gene_level.txt - Workflow Tracker

File Info

Filename: 659_bTo_pair.gene_level.txt
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/bsmiljanic/PIPE-00017/sarek_vc_daq_bams/659_bTo_r2/variant_calling/hrd/TiH/659_bTo_pair/FACETS/659_bTo_pair.gene_level.txt
Size: 3.0 MB
Workflow Run: sarek_vc_659_bTo_k8s_r2
Published: May 26, 2026 6:25 AM
Content

sample	gene	chrom	gene_start	gene_end	tsg	seg	median_cnlr_seg	segclust	seg_start	seg_end	cf.em	tcn.em	lcn.em	cf	tcn	lcn	seg_length	mcn	genes_on_seg	gene_snps	gene_het_snps	spans_segs	cn_state	filter
659_bTo_pair	A1BG	19	58345178	58353499	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	12	1	FALSE	GAIN	PASS
659_bTo_pair	A1CF	10	50799409	50885675	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	13	0	FALSE	CNLOH	PASS
659_bTo_pair	A2M	12	9067664	9116229	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	37	1	FALSE	DIPLOID	PASS
659_bTo_pair	A2ML1	12	8822472	8887001	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	38	1	FALSE	DIPLOID	PASS
659_bTo_pair	A3GALT2	1	33306766	33321098	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	A4GALT	22	42692112	42721298	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	4	0	FALSE	CNLOH	PASS
659_bTo_pair	A4GNT	3	138123718	138132387	FALSE	244	-0.465451876797886	34	136855703	138629155	NA	2	NA	NA	2	NA	1773452	NA	14	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AAAS	12	53307456	53324864	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	AACS	12	125065379	125143333	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	19	1	FALSE	DIPLOID	PASS
659_bTo_pair	AADAC	3	151814037	151828488	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	7	3	FALSE	GAIN	PASS
659_bTo_pair	AADACL2	3	151733916	151761339	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	8	1	FALSE	GAIN	PASS
659_bTo_pair	AADACL3	1	12716115	12728759	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	AADACL4	1	12644547	12667086	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	AADAT	4	170060222	170091699	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	AAGAB	15	67201033	67255195	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	11	3	FALSE	HETLOSS	PASS
659_bTo_pair	AAK1	2	69457997	69674349	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	24	1	FALSE	DIPLOID	PASS
659_bTo_pair	AAMDC	11	77821109	77918432	FALSE	712	-0.188800010767045	48	77590086	86068715	0.365165917639896	3	NA	0.365165917639896	3	NA	8478629	NA	30	14	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	AAMP	2	218264123	218270257	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	AANAT	17	76453351	76470117	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	AAR2	20	36236459	36270918	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	AARD	8	116938199	116944487	FALSE	562	1.19147043757921	84	116771700	116938460	0.364342740527346	14	NA	0.364342740527346	14	NA	166760	NA	3	3	1	TRUE	AMP	PASS
659_bTo_pair	AARS	16	70252295	70289543	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	21	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AARS2	6	44299654	44313326	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	24	1	FALSE	DIPLOID	PASS
659_bTo_pair	AARSD1	17	42950526	42964498	FALSE	1040	-0.646197503395479	26	42761348	43039396	NA	2	NA	NA	2	NA	278048	NA	18	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AASDH	4	56338287	56387508	FALSE	285	-0.676685623676823	22	55346376	64409389	0.291335969972972	1	0	0.291335969972972	1	0	9063013	1	23	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	AASDHPPT	11	106075501	106098710	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	AASS	7	122075647	122144280	FALSE	490	-0.576498321273708	26	116888215	124790543	NA	2	NA	NA	2	NA	7902328	NA	33	24	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AATF	17	36948875	37056871	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	13	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	AATK	17	81117295	81166077	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	23	0	FALSE	DIPLOID	PASS
659_bTo_pair	ABAT	16	8674565	8784575	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	16	2	FALSE	DIPLOID	PASS
659_bTo_pair	ABCA1	9	104781002	104928237	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	52	10	FALSE	DIPLOID	PASS
659_bTo_pair	ABCA10	17	69147214	69244846	FALSE	1073	-0.526841420951416	29	68868095	70175063	NA	2	NA	NA	2	NA	1306968	NA	8	36	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ABCA12	2	214931542	215138428	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	57	1	FALSE	HETLOSS	PASS
659_bTo_pair	ABCA13	7	48171458	48647496	FALSE	464	-0.323591849229323	42	45157835	48245556	0.189552622934988	3	0	0.189552622934988	3	0	3087721	3	12	90	8	TRUE	CNLOH & GAIN	PASS
659_bTo_pair	ABCA2	9	137007227	137028922	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	53	0	FALSE	HETLOSS	PASS
659_bTo_pair	ABCA3	16	2275881	2340746	FALSE	942	-0.803500535593988	16	2178660	2530995	0.365165917639896	1	0	0.365165917639896	1	0	352335	1	18	37	1	FALSE	HETLOSS	PASS
659_bTo_pair	ABCA4	1	93992835	94121132	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	52	0	FALSE	DIPLOID	PASS
659_bTo_pair	ABCA5	17	69244311	69327244	FALSE	1073	-0.526841420951416	29	68868095	70175063	NA	2	NA	NA	2	NA	1306968	NA	8	39	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ABCA6	17	69078702	69141888	FALSE	1073	-0.526841420951416	29	68868095	70175063	NA	2	NA	NA	2	NA	1306968	NA	8	39	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ABCA7	19	1040101	1065572	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	52	8	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ABCA8	17	68867292	68955392	FALSE	1073	-0.526841420951416	29	68868095	70175063	NA	2	NA	NA	2	NA	1306968	NA	8	39	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ABCA9	17	68974488	69061064	FALSE	1073	-0.526841420951416	29	68868095	70175063	NA	2	NA	NA	2	NA	1306968	NA	8	39	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ABCB1	7	87503633	87713323	FALSE	478	0.84815305531838	76	87475419	87600994	0.364342740527346	10	NA	0.364342740527346	10	NA	125575	NA	2	40	1	TRUE	AMP	PASS
659_bTo_pair	ABCB10	1	229516582	229558695	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	ABCB11	2	168915498	169031324	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	31	4	FALSE	DIPLOID	PASS
659_bTo_pair	ABCB4	7	87401697	87480435	FALSE	477	-0.558719554035895	26	86880427	87472624	NA	2	NA	NA	2	NA	592197	NA	5	31	1	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	ABCB5	7	20615207	20777038	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	31	2	FALSE	GAIN	PASS
659_bTo_pair	ABCB6	2	219209766	219219017	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	ABCB7	23	75051554	75156732	FALSE	1317	0.217996879888221	62	71533297	76176924	0.364342740527346	5	NA	0.364342740527346	5	NA	4643627	NA	35	18	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ABCB8	7	151028422	151047782	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	19	5	FALSE	HETLOSS	PASS
659_bTo_pair	ABCB9	12	122920951	122981649	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	34	1	FALSE	DIPLOID	PASS
659_bTo_pair	ABCC1	16	15949577	16143074	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	35	1	FALSE	DIPLOID	PASS
659_bTo_pair	ABCC10	6	43427366	43450430	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	28	0	FALSE	DIPLOID	PASS
659_bTo_pair	ABCC11	16	48166910	48247568	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	34	2	FALSE	DIPLOID	PASS
659_bTo_pair	ABCC12	16	48081006	48156018	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	31	1	FALSE	DIPLOID	PASS
659_bTo_pair	ABCC2	10	99782640	99852594	FALSE	666	-0.516928660882684	29	98163350	100063639	NA	2	NA	NA	2	NA	1900289	NA	16	33	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ABCC3	17	50634777	50692252	FALSE	1054	1.21248771483372	84	50634933	50692058	0.364342740527346	14	NA	0.364342740527346	14	NA	57125	NA	1	38	3	FALSE	AMP	PASS
659_bTo_pair	ABCC4	13	95019829	95301475	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	32	0	FALSE	CNLOH	PASS
659_bTo_pair	ABCC5	3	183919934	184018015	FALSE	259	-0.260370931250901	44	183654025	185254015	0.345317016959666	3	1	0.345317016959666	3	1	1599990	2	31	32	3	FALSE	GAIN	PASS
659_bTo_pair	ABCC6	16	16148928	16223522	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	34	0	FALSE	DIPLOID	PASS
659_bTo_pair	ABCC8	11	17392498	17476879	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	40	3	FALSE	DIPLOID	PASS
659_bTo_pair	ABCC9	12	21797401	21942529	FALSE	757	-0.490002350483383	34	21512373	25195063	NA	2	NA	NA	2	NA	3682690	NA	15	41	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ABCD1	23	153724868	153744762	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	14	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	ABCD2	12	39550033	39619751	FALSE	761	-0.518834393047475	27	38323923	40473121	1	2	1	1	2	1	2149198	1	8	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	ABCD3	1	94418455	94518666	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	23	0	FALSE	DIPLOID	PASS
659_bTo_pair	ABCD4	14	74285423	74303056	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	19	3	FALSE	DIPLOID	PASS
659_bTo_pair	ABCE1	4	145097932	145129179	FALSE	300	-0.423460920061428	34	143186078	151174790	NA	2	NA	NA	2	NA	7988712	NA	32	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ABCF1	6	30571376	30597179	FALSE	379	-0.524744136561063	27	30546321	31270541	1	2	1	1	2	1	724220	1	30	24	0	FALSE	DIPLOID	PASS
659_bTo_pair	ABCF2	7	151212490	151227230	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	ABCF3	3	184186023	184194012	FALSE	259	-0.260370931250901	44	183654025	185254015	0.345317016959666	3	1	0.345317016959666	3	1	1599990	2	31	19	0	FALSE	GAIN	PASS
659_bTo_pair	ABCG1	21	42199689	42297244	FALSE	1234	-0.544212636077936	27	41740855	44141314	1	2	1	1	2	1	2400459	1	31	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	ABCG2	4	88090264	88231322	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	16	2	FALSE	DIPLOID	PASS
659_bTo_pair	ABCG4	11	119149012	119162653	FALSE	728	-0.487905654975058	30	118527582	119195409	1	2	1	1	2	1	667827	1	26	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	ABCG5	2	43812472	43838865	FALSE	106	-0.392858868113437	39	42335725	46184779	NA	2	NA	NA	2	NA	3849054	NA	22	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ABCG8	2	43831942	43882987	FALSE	106	-0.392858868113437	39	42335725	46184779	NA	2	NA	NA	2	NA	3849054	NA	22	19	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ABHD1	2	27123789	27130812	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ABHD10	3	111979010	111993363	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	7	0	FALSE	GAIN	PASS
659_bTo_pair	ABHD11	7	73736094	73738867	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	ABHD12	20	25294743	25390983	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	ABHD12B	14	50872160	50904970	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	ABHD13	13	108218379	108234255	FALSE	842	-0.555564796404534	26	103046205	109206791	NA	2	NA	NA	2	NA	6160586	NA	9	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ABHD14A	3	51971426	51981199	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	ABHD14A-ACY1	3	51974706	51989183	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	ABHD14B	3	51968510	51983409	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	ABHD15	17	29560547	29567137	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ABHD16A	6	31686949	31703444	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	ABHD16B	20	63861498	63862988	FALSE	1225	-0.32421417626258	43	63733191	64273510	0.192136715055622	3	NA	0.192136715055622	3	NA	540319	NA	22	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ABHD17A	19	1876810	1885547	FALSE	1118	-0.58059819545476	23	1775405	2151345	0.186356639256811	1	0	0.186356639256811	1	0	375940	1	13	7	3	FALSE	HETLOSS	PASS
659_bTo_pair	ABHD17B	9	71862452	71910931	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	ABHD17C	15	80679684	80755621	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ABHD18	4	127965306	128039927	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	14	2	FALSE	DIPLOID	PASS
659_bTo_pair	ABHD2	15	89087459	89202360	FALSE	923	-0.958549275925123	11	88459674	89218937	0.289956079954009	0	0	0.289956079954009	0	0	759263	0	11	11	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ABHD3	18	21650897	21704805	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	11	1	FALSE	GAIN	PASS
659_bTo_pair	ABHD4	14	22598237	22613215	FALSE	849	-0.198876830204613	48	21522824	22901846	0.365165917639896	3	NA	0.365165917639896	3	NA	1379022	NA	15	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ABHD5	3	43690108	43734371	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ABHD6	3	58237506	58295693	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ABHD8	19	17292131	17310236	FALSE	1155	-0.249305971018279	46	17273895	17821522	0.298322295679939	3	NA	0.298322295679939	3	NA	547627	NA	25	10	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ABI1	10	26746593	26861087	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	12	0	FALSE	CNLOH	PASS
659_bTo_pair	ABI2	2	203328219	203447723	FALSE	166	-0.425780118113581	30	201288659	203854096	1	2	1	1	2	1	2565437	1	22	24	1	FALSE	DIPLOID	PASS
659_bTo_pair	ABI3	17	49210227	49223225	FALSE	1051	-0.636429062465303	26	48785033	49576193	NA	2	NA	NA	2	NA	791160	NA	15	9	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ABI3BP	3	100749156	100993515	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	66	4	FALSE	GAIN	PASS
659_bTo_pair	ABL1	9	130713946	130887675	FALSE	622	1.90629800271629	101	130713294	130893560	0.364342740527346	25	NA	0.364342740527346	25	NA	180266	NA	2	33	0	FALSE	AMP	PASS
659_bTo_pair	ABL2	1	179099327	179229684	FALSE	56	2.12861561966775	107	179095066	179108468	0.364342740527346	29	NA	0.364342740527346	29	NA	13402	NA	2	52	4	TRUE	AMP	PASS
659_bTo_pair	ABLIM1	10	114431113	114685003	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	29	0	FALSE	CNLOH	PASS
659_bTo_pair	ABLIM2	4	7965310	8158832	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	23	1	FALSE	GAIN	PASS
659_bTo_pair	ABLIM3	5	149141483	149260542	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	25	1	FALSE	HETLOSS	PASS
659_bTo_pair	ABO	9	133250401	133275219	FALSE	627	-0.867007674319489	12	132986776	134157867	0.365165917639896	1	0	0.365165917639896	1	0	1171091	1	28	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	ABR	17	1003518	1229738	FALSE	996	-0.883704003468192	13	148164	1298296	0.365165917639896	1	0	0.365165917639896	1	0	1150132	1	14	31	0	FALSE	HETLOSS	PASS
659_bTo_pair	ABRA	8	106759483	106770245	FALSE	561	-0.210477706860293	47	102652438	116770243	0.365165917639896	3	1	0.365165917639896	3	1	14117805	2	32	5	1	FALSE	GAIN	PASS
659_bTo_pair	ABRACL	6	139028682	139043302	FALSE	429	-0.412609995390511	39	138092232	142443520	NA	2	NA	NA	2	NA	4351288	NA	18	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ABRAXAS1	4	83459517	83523348	TRUE	290	1.37904512290128	87	83459681	83517899	0.364342740527346	16	NA	0.364342740527346	16	NA	58218	NA	2	28	5	FALSE	AMP	PASS
659_bTo_pair	ABRAXAS2	10	124801785	124836670	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	10	0	FALSE	CNLOH	PASS
659_bTo_pair	ABT1	6	26596952	26600744	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	ABTB1	3	127672935	127680920	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	13	0	FALSE	GAIN	PASS
659_bTo_pair	ABTB2	11	34150988	34358008	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	21	1	FALSE	DIPLOID	PASS
659_bTo_pair	AC000120.2	7	92112159	92179511	FALSE	479	-0.448308050861149	30	87602941	92590330	1	2	1	1	2	1	4987389	1	30	22	2	FALSE	DIPLOID	PASS
659_bTo_pair	AC000120.3	7	92131774	92245924	FALSE	479	-0.448308050861149	30	87602941	92590330	1	2	1	1	2	1	4987389	1	30	31	1	FALSE	DIPLOID	PASS
659_bTo_pair	AC001226.2	13	76992078	77129589	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	56	3	FALSE	CNLOH	PASS
659_bTo_pair	AC002094.3	17	28364288	28368012	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC002310.4	16	30534227	30558279	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC002310.5	16	30525923	30534852	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC002985.1	19	18907013	18934397	FALSE	1159	-0.165917001507678	49	18177228	19138502	0.365165917639896	3	1	0.365165917639896	3	1	961274	2	36	23	2	FALSE	GAIN	PASS
659_bTo_pair	AC002996.1	12	111753890	111791418	FALSE	802	-0.463173510714366	34	111455064	112408626	NA	2	NA	NA	2	NA	953562	NA	12	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC003002.1	19	57363566	57398584	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	13	2	FALSE	GAIN	PASS
659_bTo_pair	AC003002.2	19	57394183	57438457	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	20	1	FALSE	GAIN	PASS
659_bTo_pair	AC003002.3	19	57389884	57419994	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	14	1	FALSE	GAIN	PASS
659_bTo_pair	AC003005.1	19	57487718	57505381	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	13	0	FALSE	GAIN	PASS
659_bTo_pair	AC003006.1	19	57682045	57753575	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	28	2	FALSE	GAIN	PASS
659_bTo_pair	AC003688.1	17	7246829	7262089	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC004076.1	19	57437970	57477536	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	24	1	FALSE	GAIN	PASS
659_bTo_pair	AC004080.3	7	27163535	27180013	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	10	0	FALSE	GAIN	PASS
659_bTo_pair	AC004593.3	7	29122340	29514667	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	20	1	FALSE	GAIN	PASS
659_bTo_pair	AC004687.2	17	58345206	58417595	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	45	3	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC004691.2	7	30852273	30923812	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	14	0	FALSE	GAIN	PASS
659_bTo_pair	AC004754.1	16	249547	269943	FALSE	934	-0.725703643263354	19	47610	287124	0.365165917639896	1	0	0.365165917639896	1	0	239514	1	16	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC004805.1	17	65538102	65641033	FALSE	1069	1.3084268828524	86	65528767	65561652	0.364342740527346	15	NA	0.364342740527346	15	NA	32885	NA	2	14	1	TRUE	AMP	PASS
659_bTo_pair	AC004832.3	22	30409255	30428990	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	11	0	FALSE	CNLOH	PASS
659_bTo_pair	AC004922.1	7	99325879	99394653	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC004997.1	22	30285238	30299482	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	16	0	FALSE	CNLOH	PASS
659_bTo_pair	AC005020.2	7	99558695	99607810	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC005041.1	2	74393836	74421662	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC005154.5	7	30497077	30550761	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	5	1	FALSE	GAIN	PASS
659_bTo_pair	AC005258.1	19	2269525	2341172	FALSE	1120	-0.63588318052236	23	2233887	3062886	0.186356639256811	1	0	0.186356639256811	1	0	828999	1	28	31	5	FALSE	HETLOSS	PASS
659_bTo_pair	AC005324.3	17	15571491	15651653	FALSE	1009	-0.493836167698037	33	12666172	16027364	0.344071079426502	2	0	0.344071079426502	2	0	3361192	2	21	23	0	FALSE	CNLOH	PASS
659_bTo_pair	AC005324.4	17	15699692	15744778	FALSE	1009	-0.493836167698037	33	12666172	16027364	0.344071079426502	2	0	0.344071079426502	2	0	3361192	2	21	19	5	FALSE	CNLOH	PASS
659_bTo_pair	AC005520.1	14	73851971	73932278	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	20	1	FALSE	DIPLOID	PASS
659_bTo_pair	AC005670.2	17	46923133	47049932	FALSE	1046	-0.746772159255206	19	45395806	47696360	0.365165917639896	1	0	0.365165917639896	1	0	2300554	1	26	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC005697.1	17	27798806	27893365	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC005702.1	17	59940908	59973101	FALSE	1059	1.9344109429888	101	59893143	59950512	0.364342740527346	25	NA	0.364342740527346	25	NA	57369	NA	2	27	2	TRUE	AMP	PASS
659_bTo_pair	AC005726.1	17	28455752	28614197	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	91	1	FALSE	DIPLOID	PASS
659_bTo_pair	AC005832.4	12	4604944	4662643	FALSE	741	-0.251609480735115	44	4489790	6567957	0.345317016959666	3	1	0.345317016959666	3	1	2078167	2	28	24	1	FALSE	GAIN	PASS
659_bTo_pair	AC005833.1	12	4649101	4774184	FALSE	741	-0.251609480735115	44	4489790	6567957	0.345317016959666	3	1	0.345317016959666	3	1	2078167	2	28	24	2	FALSE	GAIN	PASS
659_bTo_pair	AC005837.2	17	76732978	76738522	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	16	0	TRUE	DIPLOID	PASS
659_bTo_pair	AC005943.1	19	1578339	1605445	FALSE	1116	-0.668595541323287	22	1229189	1605424	0.291335969972972	1	0	0.291335969972972	1	0	376235	1	21	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC006030.1	2	74211604	74363377	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	34	5	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC006059.2	3	42705756	42804518	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC006064.6	12	6556886	6607367	FALSE	741	-0.251609480735115	44	4489790	6567957	0.345317016959666	3	1	0.345317016959666	3	1	2078167	2	28	65	0	TRUE	GAIN	PASS
659_bTo_pair	AC006254.1	3	52813282	52835729	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	27	4	FALSE	HETLOSS	PASS
659_bTo_pair	AC006486.1	19	42234583	42255132	FALSE	1177	-0.671885212726332	22	41354916	42250573	0.291335969972972	1	0	0.291335969972972	1	0	895657	1	32	15	0	TRUE	HETLOSS	PASS
659_bTo_pair	AC006518.7	12	10881011	10884255	FALSE	748	0.115902835270215	57	10722867	11717834	0.334914946507217	5	2	0.334914946507217	5	2	994967	3	26	4	1	FALSE	AMP	PASS
659_bTo_pair	AC006538.2	19	2717769	2740048	FALSE	1120	-0.63588318052236	23	2233887	3062886	0.186356639256811	1	0	0.186356639256811	1	0	828999	1	28	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC007040.2	2	70939318	70995336	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	31	7	FALSE	DIPLOID	PASS
659_bTo_pair	AC007192.1	19	18153158	18178117	FALSE	1158	2.03027191983043	104	18153185	18175698	0.364342740527346	27	NA	0.364342740527346	27	NA	22513	NA	3	36	1	TRUE	AMP	PASS
659_bTo_pair	AC007240.1	2	10122739	10199288	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC007326.4	22	18906238	18947732	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	1	0	FALSE	CNLOH	PASS
659_bTo_pair	AC007375.1	14	77098311	77225462	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC007731.5	22	20429241	20446620	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	12	0	FALSE	CNLOH	PASS
659_bTo_pair	AC007846.2	17	5772926	6080792	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	1	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC007998.2	18	35443871	35497940	FALSE	1095	-0.699288883997088	20	33734323	36718652	0.365165917639896	1	0	0.365165917639896	1	0	2984329	1	17	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	AC008012.1	12	4273762	4405490	FALSE	740	2.34844226201143	111	4270040	4445757	0.364342740527346	35	NA	0.364342740527346	35	NA	175717	NA	5	50	1	FALSE	AMP	PASS
659_bTo_pair	AC008073.3	2	24124366	24190436	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC008397.2	19	18207961	18255419	FALSE	1159	-0.165917001507678	49	18177228	19138502	0.365165917639896	3	1	0.365165917639896	3	1	961274	2	36	18	1	FALSE	GAIN	PASS
659_bTo_pair	AC008403.1	19	48465837	48472431	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC008481.3	19	11466240	11505698	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC008537.1	19	40801297	40898282	FALSE	1173	-0.760690164248215	19	40322104	40807873	0.365165917639896	1	0	0.365165917639896	1	0	485769	1	21	23	8	TRUE	HETLOSS	PASS
659_bTo_pair	AC008575.1	5	112827213	112867582	FALSE	330	1.05354209618678	81	112707270	112845879	0.364342740527346	12	NA	0.364342740527346	12	NA	138609	NA	2	43	8	TRUE	AMP	PASS
659_bTo_pair	AC008581.2	5	77030902	77152155	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	18	1	FALSE	HETLOSS	PASS
659_bTo_pair	AC008676.3	5	157341596	157460100	FALSE	353	-0.698571741790457	22	157138801	161546576	0.291335969972972	1	0	0.291335969972972	1	0	4407775	1	29	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	AC008687.1	19	49022953	49036895	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC008687.8	19	49055793	49065076	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC008695.1	5	131425891	131796983	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	60	2	FALSE	HETLOSS	PASS
659_bTo_pair	AC008750.8	19	51350373	51368099	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC008758.1	19	12461559	12551474	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	18	1	FALSE	DIPLOID	PASS
659_bTo_pair	AC008758.4	19	12379189	12401274	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	AC008758.5	19	12391949	12441082	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	14	2	FALSE	DIPLOID	PASS
659_bTo_pair	AC008758.6	19	12433103	12484816	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	10	2	FALSE	DIPLOID	PASS
659_bTo_pair	AC008763.2	19	7629796	7643048	FALSE	1130	-0.690953718254595	21	7440128	7870576	0.140309795179477	0	0	0.140309795179477	0	0	430448	0	25	19	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	AC008763.3	19	7678501	7682854	FALSE	1130	-0.690953718254595	21	7440128	7870576	0.140309795179477	0	0	0.140309795179477	0	0	430448	0	25	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	AC008764.1	19	16479067	16628204	FALSE	1154	-0.533888138892061	27	16361883	17271664	1	2	1	1	2	1	909781	1	23	59	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC008764.4	19	16577642	16660115	FALSE	1154	-0.533888138892061	27	16361883	17271664	1	2	1	1	2	1	909781	1	23	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC008770.1	19	12017888	12052967	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC008770.2	19	11925075	11979290	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC008878.1	19	7507052	7519622	FALSE	1130	-0.690953718254595	21	7440128	7870576	0.140309795179477	0	0	0.140309795179477	0	0	430448	0	25	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	AC008878.2	19	7533595	7540059	FALSE	1130	-0.690953718254595	21	7440128	7870576	0.140309795179477	0	0	0.140309795179477	0	0	430448	0	25	8	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	AC008878.3	19	7382834	7472477	FALSE	1130	-0.690953718254595	21	7440128	7870576	0.140309795179477	0	0	0.140309795179477	0	0	430448	0	25	24	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	AC008982.1	19	38817471	38840178	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC009086.2	16	29663279	29695144	FALSE	965	-0.735005669796309	19	28989573	29982749	0.365165917639896	1	0	0.365165917639896	1	0	993176	1	25	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	AC009119.2	16	83908132	83951445	FALSE	987	-0.578642888038652	23	81999201	85806436	0.186356639256811	1	0	0.186356639256811	1	0	3807235	1	31	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC009133.6	16	29812261	29820092	FALSE	965	-0.735005669796309	19	28989573	29982749	0.365165917639896	1	0	0.365165917639896	1	0	993176	1	25	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC009163.2	16	75528532	75545428	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	9	2	FALSE	DIPLOID	PASS
659_bTo_pair	AC009163.4	16	75412684	75464706	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC009336.2	2	176151085	176173097	FALSE	153	-0.469039793655258	34	172736055	177217715	NA	2	NA	NA	2	NA	4481660	NA	28	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC009690.1	15	72284727	72375981	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	26	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC009690.3	15	72266746	72319946	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC009879.2	8	66430185	66445324	FALSE	550	-0.186881774239562	48	60208949	67746087	0.365165917639896	3	NA	0.365165917639896	3	NA	7537138	NA	33	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	AC009879.3	8	66432486	66518524	FALSE	550	-0.186881774239562	48	60208949	67746087	0.365165917639896	3	NA	0.365165917639896	3	NA	7537138	NA	33	20	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	AC010132.3	7	42909273	42932174	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	14	0	FALSE	GAIN	PASS
659_bTo_pair	AC010197.2	12	21536203	21657798	FALSE	757	-0.490002350483383	34	21512373	25195063	NA	2	NA	NA	2	NA	3682690	NA	15	24	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC010255.3	5	122129622	122183949	FALSE	332	0.458116582973227	66	122076938	122775147	0.364342740527346	7	NA	0.364342740527346	7	NA	698209	NA	5	8	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	AC010319.2	19	17436611	17460804	FALSE	1155	-0.249305971018279	46	17273895	17821522	0.298322295679939	3	NA	0.298322295679939	3	NA	547627	NA	25	7	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	AC010323.1	19	8308283	8321379	FALSE	1132	-0.583194501817822	26	7916513	8843246	NA	2	NA	NA	2	NA	926733	NA	25	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC010325.1	19	50776141	50793142	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC010326.2	19	57876765	57916591	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	11	0	FALSE	GAIN	PASS
659_bTo_pair	AC010327.1	19	55154757	55160671	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	11	4	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	AC010422.3	19	12643831	12648397	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC010422.5	19	12664828	12669397	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC010422.6	19	12525720	12580975	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC010422.8	19	12668071	12681834	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC010463.1	19	17267418	17282966	FALSE	1154	-0.533888138892061	27	16361883	17271664	1	2	1	1	2	1	909781	1	23	14	0	TRUE	DIPLOID	PASS
659_bTo_pair	AC010487.3	19	52880663	52962768	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC010522.1	19	57819719	57858941	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	9	2	FALSE	GAIN	PASS
659_bTo_pair	AC010531.1	16	87302876	87334273	FALSE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC010542.3	16	66469812	66517312	FALSE	973	-0.642771892390385	26	64948130	66912568	NA	2	NA	NA	2	NA	1964438	NA	17	10	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC010547.4	16	71447600	71489311	FALSE	983	-0.428709389755029	30	71178941	72171154	1	2	1	1	2	1	992213	1	22	17	4	FALSE	DIPLOID	PASS
659_bTo_pair	AC010615.4	19	21405159	21491266	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	3	0	FALSE	AMP (many states)	PASS
659_bTo_pair	AC010616.2	19	41956879	41994232	FALSE	1177	-0.671885212726332	22	41354916	42250573	0.291335969972972	1	0	0.291335969972972	1	0	895657	1	32	30	1	FALSE	HETLOSS	PASS
659_bTo_pair	AC010619.1	19	49462752	49486231	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	18	1	FALSE	HETLOSS	PASS
659_bTo_pair	AC010646.1	19	17235940	17255448	FALSE	1154	-0.533888138892061	27	16361883	17271664	1	2	1	1	2	1	909781	1	23	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC011330.3	15	43614208	43632283	FALSE	902	-0.672637691845835	22	43521582	44676538	0.291335969972972	1	0	0.291335969972972	1	0	1154956	1	21	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC011448.1	19	19516227	19536076	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	11	0	FALSE	AMP (many states)	PASS
659_bTo_pair	AC011452.1	19	49909501	49958391	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	11	2	FALSE	HETLOSS	PASS
659_bTo_pair	AC011455.2	19	38915404	38949855	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	23	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC011462.1	19	41350853	41425001	FALSE	1176	1.53003969549462	91	41330787	41353939	0.364342740527346	18	NA	0.364342740527346	18	NA	23152	NA	3	32	0	TRUE	AMP	PASS
659_bTo_pair	AC011473.4	19	50996018	51009581	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC011479.1	19	38289151	38304910	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	AC011498.4	19	4528427	4540067	FALSE	1124	-0.62008955817668	23	4168484	5151543	0.186356639256811	1	0	0.186356639256811	1	0	983059	1	28	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC011499.1	19	5784005	5785619	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	AC011511.1	19	10305427	10316009	FALSE	1139	-0.718742930681428	18	10252235	10467338	0.180216333675297	0	0	0.180216333675297	0	0	215103	0	13	9	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	AC011511.4	19	10315471	10320678	FALSE	1139	-0.718742930681428	18	10252235	10467338	0.180216333675297	0	0	0.180216333675297	0	0	215103	0	13	7	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	AC011530.1	19	45779437	45785973	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	10	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	AC011604.2	12	20815674	21090245	FALSE	755	-0.347739111320178	43	18683333	21462024	0.192136715055622	3	NA	0.192136715055622	3	NA	2778691	NA	14	28	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	AC012184.2	16	70299194	70372582	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	25	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC012213.5	8	103398658	103501895	FALSE	561	-0.210477706860293	47	102652438	116770243	0.365165917639896	3	1	0.365165917639896	3	1	14117805	2	32	20	3	FALSE	GAIN	PASS
659_bTo_pair	AC012254.2	18	47108188	47176345	FALSE	1100	-0.758401070483502	19	45624783	47803983	0.365165917639896	1	0	0.365165917639896	1	0	2179200	1	22	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC012309.1	19	37093019	37210512	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	26	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC012476.1	15	40695129	40732158	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC012531.2	12	53985845	54034888	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	20	1	FALSE	DIPLOID	PASS
659_bTo_pair	AC012651.1	15	42348103	42412317	FALSE	898	-0.892191685906218	12	42081573	42681446	0.365165917639896	1	0	0.365165917639896	1	0	599873	1	13	30	3	FALSE	HETLOSS	PASS
659_bTo_pair	AC013394.1	15	92883413	92949230	FALSE	930	1.18567329271683	84	92900289	93052530	0.364342740527346	14	NA	0.364342740527346	14	NA	152241	NA	3	24	0	FALSE	AMP	PASS
659_bTo_pair	AC013489.1	15	88459501	88546585	FALSE	923	-0.958549275925123	11	88459674	89218937	0.289956079954009	0	0	0.289956079954009	0	0	759263	0	11	22	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	AC013717.1	2	44168851	44320310	FALSE	106	-0.392858868113437	39	42335725	46184779	NA	2	NA	NA	2	NA	3849054	NA	22	22	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC015688.4	17	27623364	27640777	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC015802.6	17	76563710	76570544	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC015813.2	17	57989038	58007246	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC017083.3	2	68131238	68261230	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	23	3	FALSE	DIPLOID	PASS
659_bTo_pair	AC018362.3	15	42497395	42548786	FALSE	898	-0.892191685906218	12	42081573	42681446	0.365165917639896	1	0	0.365165917639896	1	0	599873	1	13	13	1	FALSE	HETLOSS	PASS
659_bTo_pair	AC018512.1	15	43772617	43799133	FALSE	902	-0.672637691845835	22	43521582	44676538	0.291335969972972	1	0	0.291335969972972	1	0	1154956	1	21	23	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC018523.2	11	14493783	14520344	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	AC018554.3	16	60358455	60359480	FALSE	972	-0.499158643645776	34	57931773	64947842	NA	2	NA	NA	2	NA	7016069	NA	18	4	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC018709.1	4	186426546	186555328	FALSE	305	-0.853036814117495	12	184629284	186555336	0.365165917639896	1	0	0.365165917639896	1	0	1926052	1	22	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	AC018755.2	19	51612091	51646889	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	17	1	FALSE	HETLOSS	PASS
659_bTo_pair	AC019117.2	7	17299295	17467234	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	14	0	FALSE	GAIN	PASS
659_bTo_pair	AC020636.2	3	150882997	150941743	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	6	1	FALSE	GAIN	PASS
659_bTo_pair	AC020907.6	19	35106510	35124297	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC020909.1	19	50415799	50428409	FALSE	1189	1.04513167526385	81	50382423	50418015	0.364342740527346	12	NA	0.364342740527346	12	NA	35592	NA	3	12	2	TRUE	AMP	PASS
659_bTo_pair	AC020915.1	19	58278966	58315197	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	10	0	FALSE	GAIN	PASS
659_bTo_pair	AC020915.5	19	58228914	58315183	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	23	0	FALSE	GAIN	PASS
659_bTo_pair	AC020922.1	19	55352301	55359516	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	9	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	AC021097.2	7	151207837	151227166	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	16	1	FALSE	HETLOSS	PASS
659_bTo_pair	AC021097.3	7	151207837	151210378	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	1	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC021660.3	3	98521133	98585498	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	11	1	FALSE	GAIN	PASS
659_bTo_pair	AC022335.1	12	21047179	21176895	FALSE	755	-0.347739111320178	43	18683333	21462024	0.192136715055622	3	NA	0.192136715055622	3	NA	2778691	NA	14	10	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	AC022384.1	3	10249372	10285796	FALSE	199	-1.0441448018759	8	10200366	12187515	0.342391532111247	0	0	0.342391532111247	0	0	1987149	0	14	12	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	AC022400.6	10	73796514	73811651	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	35	0	FALSE	CNLOH	PASS
659_bTo_pair	AC022414.1	5	77086732	77427124	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	25	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC022826.2	8	73688691	73878854	FALSE	553	-0.248188717260806	46	68331252	73878866	0.298322295679939	3	NA	0.298322295679939	3	NA	5547614	NA	20	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	AC023055.1	12	55757275	55827546	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC023509.3	12	53506688	53625979	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC024592.3	19	5866171	5903787	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	11	2	FALSE	DIPLOID	PASS
659_bTo_pair	AC025165.3	12	57773028	57787046	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	AC025263.2	12	69801669	69855363	FALSE	790	-0.377310724638489	39	69586733	71157609	NA	2	NA	NA	2	NA	1570876	NA	11	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC025283.2	16	3382113	3397745	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC025283.3	16	3365099	3479550	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	31	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC026316.5	3	170418868	170860380	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	17	0	FALSE	GAIN	PASS
659_bTo_pair	AC026398.1	5	131807143	131994278	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	32	4	FALSE	HETLOSS	PASS
659_bTo_pair	AC026464.1	16	69335276	69351730	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC026464.3	16	69335091	69356306	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC026464.4	16	69299682	69322700	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC026464.6	16	69328644	69334871	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC026786.1	12	133130984	133202369	FALSE	818	-0.324030199616913	43	132687628	133234369	0.192136715055622	3	NA	0.192136715055622	3	NA	546741	NA	14	15	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	AC026954.2	17	7312661	7319174	FALSE	999	0.337193926194085	65	7307123	7323993	0.364342740527346	6	NA	0.364342740527346	6	NA	16870	NA	4	20	2	FALSE	AMP (many states)	PASS
659_bTo_pair	AC027644.4	7	66628958	66811189	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC027796.3	17	3585149	3636249	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	18	2	FALSE	HETLOSS	PASS
659_bTo_pair	AC034102.2	12	56101331	56109289	FALSE	777	1.10495844194143	81	56076841	56103531	0.364342740527346	13	NA	0.364342740527346	13	NA	26690	NA	2	15	0	TRUE	AMP	PASS
659_bTo_pair	AC036214.3	8	79918860	80080775	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	11	1	FALSE	GAIN	PASS
659_bTo_pair	AC037459.1	8	22589274	22602084	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	AC040162.1	16	67929614	67936017	FALSE	979	-0.429457644119204	34	67645299	68698317	NA	2	NA	NA	2	NA	1053018	NA	33	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC046185.1	17	63702845	63752097	FALSE	1064	-0.419094292936043	39	61867575	63873599	NA	2	NA	NA	2	NA	2006024	NA	24	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC048338.1	12	122207779	122266423	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	20	1	FALSE	DIPLOID	PASS
659_bTo_pair	AC055811.2	17	17202649	17237185	FALSE	1013	1.32513728824751	87	17203003	17242219	0.364342740527346	15	NA	0.364342740527346	15	NA	39216	NA	4	35	0	FALSE	AMP	PASS
659_bTo_pair	AC058822.1	4	53377839	54295272	FALSE	283	-0.7726728361031	19	49038034	54241294	0.365165917639896	1	0	0.365165917639896	1	0	5203260	1	15	98	1	TRUE	HETLOSS	PASS
659_bTo_pair	AC067752.1	10	62520448	62672011	FALSE	647	-0.82624597227901	16	62198451	62670209	0.365165917639896	1	0	0.365165917639896	1	0	471758	1	3	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC067968.1	19	44025354	44087318	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	28	3	FALSE	HETLOSS	PASS
659_bTo_pair	AC068234.1	17	47253897	47344292	FALSE	1046	-0.746772159255206	19	45395806	47696360	0.365165917639896	1	0	0.365165917639896	1	0	2300554	1	26	20	1	FALSE	HETLOSS	PASS
659_bTo_pair	AC068533.4	7	66087761	66152277	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC068547.1	2	151802651	151973949	FALSE	149	-0.454179855872301	30	147845197	157628657	1	2	1	1	2	1	9783460	1	30	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC068580.4	11	1734821	1763954	FALSE	679	-0.702000712925199	21	1256247	1938477	0.140309795179477	0	0	0.140309795179477	0	0	682230	0	19	15	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	AC068631.2	3	186581995	186597103	FALSE	263	-0.396590537714608	39	186161612	186743777	NA	2	NA	NA	2	NA	582165	NA	9	5	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC068775.1	12	10412312	10436001	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	11	2	FALSE	DIPLOID	PASS
659_bTo_pair	AC068790.8	12	123973944	124088594	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC068831.7	15	90966190	91022566	FALSE	929	-0.700679172673924	22	90876261	92655591	0.291335969972972	1	0	0.291335969972972	1	0	1779330	1	13	38	3	FALSE	HETLOSS	PASS
659_bTo_pair	AC068896.1	10	124617080	124791727	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	14	0	FALSE	CNLOH	PASS
659_bTo_pair	AC068946.1	2	219075329	219170827	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC068946.2	2	219209772	219222738	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	28	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC069257.3	3	196248230	196318222	FALSE	271	-0.194588974812627	47	196198492	198169864	0.365165917639896	3	1	0.365165917639896	3	1	1971372	2	29	8	0	FALSE	GAIN	PASS
659_bTo_pair	AC069368.1	15	64841883	64930920	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC069444.2	3	119703076	119807570	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	19	0	FALSE	GAIN	PASS
659_bTo_pair	AC069503.2	12	121888809	121921470	FALSE	814	-0.652137007233431	22	121849022	122019673	0.291335969972972	1	0	0.291335969972972	1	0	170651	1	5	7	2	FALSE	HETLOSS	PASS
659_bTo_pair	AC073082.1	2	48632291	48755724	FALSE	110	-0.435434252584523	30	48441014	54599245	1	2	1	1	2	1	6158231	1	18	24	1	FALSE	DIPLOID	PASS
659_bTo_pair	AC073111.3	7	150368790	150396915	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC073283.3	2	47065941	47176511	FALSE	108	-0.751130758275331	19	46479657	47176488	0.365165917639896	1	0	0.365165917639896	1	0	696831	1	11	17	2	FALSE	HETLOSS	PASS
659_bTo_pair	AC073508.2	17	40627356	40665141	FALSE	1033	1.57926160783251	91	40624994	40656553	0.364342740527346	19	NA	0.364342740527346	19	NA	31559	NA	3	58	0	TRUE	AMP	PASS
659_bTo_pair	AC073610.2	12	48921963	48939663	FALSE	768	-0.491963868457131	34	48045387	49018767	NA	2	NA	NA	2	NA	973380	NA	28	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC073610.3	12	48903503	48957365	FALSE	768	-0.491963868457131	34	48045387	49018767	NA	2	NA	NA	2	NA	973380	NA	28	20	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC073612.1	12	71674204	71698968	FALSE	792	-0.349776929755415	43	71610399	76348235	0.192136715055622	3	NA	0.192136715055622	3	NA	4737836	NA	18	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	AC073896.1	12	56285916	56316059	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC074143.1	16	67163385	67165815	FALSE	976	-0.467350965811123	34	67110264	67538977	NA	2	NA	NA	2	NA	428713	NA	24	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC078927.1	12	66123917	66169985	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC079447.1	2	99141485	99322741	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	33	2	FALSE	DIPLOID	PASS
659_bTo_pair	AC079594.2	3	160227454	160449829	FALSE	250	-0.231905273142314	46	156829339	161250770	0.298322295679939	3	NA	0.298322295679939	3	NA	4421431	NA	26	51	4	FALSE	GAIN (many states)	PASS
659_bTo_pair	AC083800.1	3	119147375	119187807	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	5	0	FALSE	GAIN	PASS
659_bTo_pair	AC084337.2	11	6481485	6508978	FALSE	682	-0.308581000695747	43	6240079	6614875	0.192136715055622	3	NA	0.192136715055622	3	NA	374796	NA	15	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	AC087289.3	17	75898645	75930129	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	35	2	FALSE	DIPLOID	PASS
659_bTo_pair	AC087632.1	15	64181180	64381440	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC087721.2	15	41284013	41380743	FALSE	894	-0.874433234740196	13	41183964	41662415	0.365165917639896	1	0	0.365165917639896	1	0	478451	1	12	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC090004.1	3	14135217	14148252	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	8	2	FALSE	HETLOSS	PASS
659_bTo_pair	AC090227.1	18	49795793	49837623	FALSE	1103	-0.712987700962632	19	48029643	51023578	0.365165917639896	1	0	0.365165917639896	1	0	2993935	1	20	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC090360.1	18	80034346	80097088	FALSE	1113	-0.883471952658051	12	75410842	80247341	0.365165917639896	1	0	0.365165917639896	1	0	4836499	1	17	8	2	FALSE	HETLOSS	PASS
659_bTo_pair	AC090517.4	15	56652488	56918571	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC090527.2	15	45587351	45676314	FALSE	904	-0.666047806656427	20	44736698	49422632	0.365165917639896	1	0	0.365165917639896	1	0	4685934	1	30	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	AC091057.6	15	30624548	30685606	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC091167.2	15	90249556	90272208	FALSE	927	-0.86531749998723	13	90191956	90642068	0.365165917639896	1	0	0.365165917639896	1	0	450112	1	11	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC091167.6	15	90266317	90314499	FALSE	927	-0.86531749998723	13	90191956	90642068	0.365165917639896	1	0	0.365165917639896	1	0	450112	1	11	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC091167.7	15	90234200	90265462	FALSE	927	-0.86531749998723	13	90191956	90642068	0.365165917639896	1	0	0.365165917639896	1	0	450112	1	11	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC091551.1	18	50968019	51058144	FALSE	1103	-0.712987700962632	19	48029643	51023578	0.365165917639896	1	0	0.365165917639896	1	0	2993935	1	20	19	1	TRUE	HETLOSS	PASS
659_bTo_pair	AC091959.3	5	146203550	146339251	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	24	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC092017.3	1	211082872	211188533	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC092042.3	3	42809446	43055871	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	33	3	FALSE	HETLOSS	PASS
659_bTo_pair	AC092073.1	19	34396315	34409364	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC092111.3	12	8138140	8175320	FALSE	745	-0.243574834353832	44	6965649	8175835	0.345317016959666	3	1	0.345317016959666	3	1	1210186	2	26	4	1	FALSE	GAIN	PASS
659_bTo_pair	AC092143.1	16	89919165	89936092	FALSE	993	-0.673014862380027	22	89828600	89919507	0.291335969972972	1	0	0.291335969972972	1	0	90907	1	4	16	2	TRUE	HETLOSS	PASS
659_bTo_pair	AC092329.3	19	23222755	23274221	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	AC092587.1	2	99154998	99195298	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	16	2	FALSE	DIPLOID	PASS
659_bTo_pair	AC092647.5	7	55887277	55955239	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	11	2	FALSE	DIPLOID	PASS
659_bTo_pair	AC092718.3	16	81053587	81096296	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	AC092718.8	16	81022316	81096284	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	30	4	FALSE	DIPLOID	PASS
659_bTo_pair	AC093155.3	1	86993009	87169204	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC093227.2	19	37689865	37719188	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC093423.3	1	89633140	89933250	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	AC093512.2	16	30053090	30070420	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	AC093525.1	16	2513965	2527955	FALSE	942	-0.803500535593988	16	2178660	2530995	0.365165917639896	1	0	0.365165917639896	1	0	352335	1	18	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC093525.2	16	2496032	2520218	FALSE	942	-0.803500535593988	16	2178660	2530995	0.365165917639896	1	0	0.365165917639896	1	0	352335	1	18	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	AC093668.1	7	102541501	102592444	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC093668.2	7	102483344	102543764	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	AC093668.3	7	102538417	102543849	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC093827.5	4	86886472	86936178	FALSE	291	-0.458701040497953	34	83536708	87613131	NA	2	NA	NA	2	NA	4076423	NA	17	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC093899.2	2	169479480	169525922	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	22	1	FALSE	DIPLOID	PASS
659_bTo_pair	AC096887.1	3	52969119	53099453	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	AC097104.1	12	56449700	56488170	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	28	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC097625.1	23	15561047	15675608	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	24	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	AC097634.4	3	70959226	71754229	FALSE	229	0.774994071504096	74	69734550	71589030	0.364342740527346	9	NA	0.364342740527346	9	NA	1854480	NA	4	57	1	TRUE	INDETERMINATE	PASS
659_bTo_pair	AC097636.1	3	51798803	51830856	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC097637.1	3	52221081	52231190	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC098484.3	1	42767292	42794493	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC098582.1	4	88523810	88649847	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC098588.1	4	144210701	145098174	FALSE	300	-0.423460920061428	34	143186078	151174790	NA	2	NA	NA	2	NA	7988712	NA	32	22	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC098650.1	3	28349178	29767537	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	15	3	FALSE	HETLOSS	PASS
659_bTo_pair	AC098850.3	17	16690261	16804453	FALSE	1012	-0.646922995033775	26	16234077	17184849	NA	2	NA	NA	2	NA	950772	NA	11	28	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC099811.2	17	42119674	42154916	FALSE	1036	-0.764029118419186	19	41624551	42193564	0.365165917639896	1	0	0.365165917639896	1	0	569013	1	25	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC099850.2	17	59197566	59215226	FALSE	1058	-0.423419268198233	34	58422367	59890994	NA	2	NA	NA	2	NA	1468627	NA	20	16	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC100868.1	8	132024238	132085655	FALSE	565	-0.282741903777565	44	129748604	134610527	0.345317016959666	3	1	0.345317016959666	3	1	4861923	2	18	24	0	FALSE	GAIN	PASS
659_bTo_pair	AC104109.3	5	134167170	134226071	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC104151.1	16	76553417	76819624	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC104304.1	3	46581150	46617226	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC104389.4	11	5254392	5678434	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	98	16	FALSE	HETLOSS	PASS
659_bTo_pair	AC104389.5	11	5248270	5254783	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC104452.1	3	49416777	49429314	FALSE	218	-0.900819276070563	13	49413105	49683092	0.365165917639896	1	0	0.365165917639896	1	0	269987	1	7	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC104472.3	3	155763043	155854442	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	15	0	FALSE	GAIN	PASS
659_bTo_pair	AC104532.1	19	5904841	5914707	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC104581.2	17	7925931	7930622	FALSE	1002	-0.806633716627379	14	7689340	8047671	0.365165917639896	1	0	0.365165917639896	1	0	358331	1	15	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC104662.2	4	25160663	25277306	FALSE	278	-0.217595572850614	44	20704713	38137253	0.345317016959666	3	1	0.345317016959666	3	1	17432540	2	29	11	0	FALSE	GAIN	PASS
659_bTo_pair	AC105052.1	7	102582523	102642869	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	9	2	FALSE	DIPLOID	PASS
659_bTo_pair	AC105052.3	7	102637049	102671641	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	6	2	FALSE	DIPLOID	PASS
659_bTo_pair	AC106886.5	16	30704067	30745169	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	54	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC107871.1	15	68184032	68229718	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC107959.5	8	23084403	23115536	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC108488.2	2	3531984	3547957	FALSE	89	-0.524158836377085	27	41620	3847167	1	2	1	1	2	1	3805547	1	18	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC108941.2	4	69810780	69847786	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC109583.3	3	46742092	46812558	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC110275.1	8	43018424	43077334	FALSE	541	-0.815492706726597	16	42338595	47735321	0.365165917639896	1	0	0.365165917639896	1	0	5396726	1	15	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC112128.1	3	113361901	113515151	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	41	4	FALSE	GAIN	PASS
659_bTo_pair	AC112504.2	3	141738474	141807919	FALSE	246	-0.322519280750539	43	139344000	142447976	0.192136715055622	3	NA	0.192136715055622	3	NA	3103976	NA	19	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	AC113348.2	5	178694605	178729335	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC113554.1	17	63484823	63521848	FALSE	1064	-0.419094292936043	39	61867575	63873599	NA	2	NA	NA	2	NA	2006024	NA	24	17	5	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC114490.2	1	34981533	35031741	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	26	1	FALSE	DIPLOID	PASS
659_bTo_pair	AC114490.3	1	34974356	34985313	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC116366.3	5	132410832	132646079	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	94	0	TRUE	HETLOSS	PASS
659_bTo_pair	AC117378.1	12	56714612	56741535	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	17	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC117457.1	3	178419123	178843300	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	5	0	FALSE	GAIN	PASS
659_bTo_pair	AC118470.1	1	247711813	247723764	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC118549.1	1	77562416	77683419	FALSE	25	-0.394411030612058	39	74026891	77942032	NA	2	NA	NA	2	NA	3915141	NA	22	18	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC118553.2	1	99970011	100083321	FALSE	31	-0.34979279123772	43	94820443	100270584	0.192136715055622	3	NA	0.192136715055622	3	NA	5450141	NA	22	20	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	AC119674.2	1	56173433	56524495	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC120057.2	17	7240427	7244635	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC120114.4	16	29817239	29830627	FALSE	965	-0.735005669796309	19	28989573	29982749	0.365165917639896	1	0	0.365165917639896	1	0	993176	1	25	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC124312.1	15	24955034	25000276	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC126283.2	4	109713916	109801999	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	20	1	FALSE	DIPLOID	PASS
659_bTo_pair	AC127029.3	17	63917203	63931385	FALSE	1065	0.610950559170025	71	63880340	63941272	0.364342740527346	8	NA	0.364342740527346	8	NA	60932	NA	7	13	2	FALSE	INDETERMINATE	PASS
659_bTo_pair	AC129492.3	17	8150816	8162975	FALSE	1004	-0.905703364358502	13	8096639	8190110	0.365165917639896	1	0	0.365165917639896	1	0	93471	1	7	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC131160.1	3	183815568	183884889	FALSE	259	-0.260370931250901	44	183654025	185254015	0.345317016959666	3	1	0.345317016959666	3	1	1599990	2	31	14	0	FALSE	GAIN	PASS
659_bTo_pair	AC134669.1	17	31305213	31318831	FALSE	1019	1.11370148874887	81	31090043	31387166	0.364342740527346	13	NA	0.364342740527346	13	NA	297123	NA	5	5	0	FALSE	AMP	PASS
659_bTo_pair	AC134980.3	15	22015233	22095857	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC135050.2	16	31083439	31094956	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	17	2	FALSE	DIPLOID	PASS
659_bTo_pair	AC135178.2	17	8368638	8383187	FALSE	1005	-0.533729334585785	29	8204923	8370291	NA	2	NA	NA	2	NA	165368	NA	9	10	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC137834.1	12	57249609	57296484	FALSE	780	-0.355982590799428	43	57138514	57456829	0.192136715055622	3	NA	0.192136715055622	3	NA	318315	NA	9	19	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	AC138696.1	8	143247110	143276403	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	AC138811.2	16	18788063	18801519	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC138894.1	16	28456371	28492098	FALSE	962	-0.522336070959039	29	27403203	28925074	NA	2	NA	NA	2	NA	1521871	NA	25	18	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AC139491.7	5	176063748	176126959	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	14	2	FALSE	HETLOSS	PASS
659_bTo_pair	AC139530.2	17	81703371	81720539	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	18	2	FALSE	DIPLOID	PASS
659_bTo_pair	AC140504.1	16	15395754	15515348	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC142391.1	5	139442316	139462707	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	AC144573.1	8	37934340	37965953	FALSE	532	-0.898955944857558	13	37845201	38269206	0.365165917639896	1	0	0.365165917639896	1	0	424005	1	12	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC187653.1	7	290170	294422	FALSE	450	-0.329551508654045	40	193185	2379492	0.308149309490068	3	1	0.308149309490068	3	1	2186307	2	26	4	1	FALSE	GAIN	PASS
659_bTo_pair	AC233992.2	8	144353228	144355609	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	AC235565.2	23	102360395	102471812	FALSE	1321	0.439394403838451	66	101391440	103377786	0.364342740527346	7	NA	0.364342740527346	7	NA	1986346	NA	34	1	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	AC239799.1	1	146113652	146229000	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	11	2	FALSE	DIPLOID	PASS
659_bTo_pair	AC243547.3	1	145927258	145977811	FALSE	44	-0.0508975396039555	55	119911615	146019534	0.328696605851359	4	NA	0.328696605851359	4	NA	26107919	NA	33	18	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	AC243967.1	19	41708612	41761282	FALSE	1177	-0.671885212726332	22	41354916	42250573	0.291335969972972	1	0	0.291335969972972	1	0	895657	1	32	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC244197.3	23	149482543	149533935	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	11	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	AC244517.10	5	141223372	141245861	FALSE	339	-0.747375863769128	19	140786750	141303022	0.365165917639896	1	0	0.365165917639896	1	0	516272	1	34	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC245033.1	15	82536788	82573194	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	13	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	AC245748.1	19	44329695	44401608	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	AC253536.7	22	23971378	23980469	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	1	0	FALSE	CNLOH	PASS
659_bTo_pair	ACAA1	3	38103129	38137242	FALSE	210	-0.747326004597467	19	37329112	38136668	0.365165917639896	1	0	0.365165917639896	1	0	807556	1	7	31	0	TRUE	HETLOSS	PASS
659_bTo_pair	ACAA2	18	49782167	49813960	FALSE	1103	-0.712987700962632	19	48029643	51023578	0.365165917639896	1	0	0.365165917639896	1	0	2993935	1	20	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	ACACA	17	37084988	37406818	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	67	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ACACB	12	109116595	109268226	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	56	2	FALSE	DIPLOID	PASS
659_bTo_pair	ACAD10	12	111686056	111757107	FALSE	802	-0.463173510714366	34	111455064	112408626	NA	2	NA	NA	2	NA	953562	NA	12	21	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ACAD11	3	132558138	132660723	FALSE	242	-0.32037413513609	40	130560427	134790274	0.308149309490068	3	1	0.308149309490068	3	1	4229847	2	29	26	2	FALSE	GAIN	PASS
659_bTo_pair	ACAD8	11	134253495	134265855	FALSE	734	-0.516486951202814	27	128842412	134387591	1	2	1	1	2	1	5545179	1	27	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	ACAD9	3	128879596	128916067	FALSE	240	-0.311262736248051	40	128620554	130098189	0.308149309490068	3	1	0.308149309490068	3	1	1477635	2	22	21	3	FALSE	GAIN	PASS
659_bTo_pair	ACADL	2	210187939	210225491	FALSE	171	-0.69211072472077	22	209829280	210677970	0.291335969972972	1	0	0.291335969972972	1	0	848690	1	7	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	ACADM	1	75724347	75787575	FALSE	25	-0.394411030612058	39	74026891	77942032	NA	2	NA	NA	2	NA	3915141	NA	22	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ACADS	12	120725735	120740008	FALSE	810	-0.438737881374958	34	120127967	120903912	NA	2	NA	NA	2	NA	775945	NA	20	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ACADSB	10	123008979	123058311	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	11	0	FALSE	CNLOH	PASS
659_bTo_pair	ACADVL	17	7217125	7225273	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	ACAN	15	88803442	88875354	FALSE	923	-0.958549275925123	11	88459674	89218937	0.289956079954009	0	0	0.289956079954009	0	0	759263	0	11	40	6	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ACAP1	17	7336529	7351478	FALSE	1000	-0.750226164220686	19	7324407	7655594	0.365165917639896	1	0	0.365165917639896	1	0	331187	1	31	22	1	FALSE	HETLOSS	PASS
659_bTo_pair	ACAP2	3	195274736	195443078	FALSE	269	-0.263219948753545	44	189957970	195888442	0.345317016959666	3	1	0.345317016959666	3	1	5930472	2	31	23	1	FALSE	GAIN	PASS
659_bTo_pair	ACAP3	1	1292376	1309609	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	26	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ACAT1	11	108121516	108147776	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	ACAT2	6	159760328	159779055	FALSE	444	-0.505238631103688	30	158776425	160753038	1	2	1	1	2	1	1976613	1	17	10	3	FALSE	DIPLOID	PASS
659_bTo_pair	ACBD3	1	226144679	226186730	FALSE	74	1.34237097904705	87	226062891	226152402	0.364342740527346	16	NA	0.364342740527346	16	NA	89511	NA	2	10	1	TRUE	AMP	PASS
659_bTo_pair	ACBD4	17	45132600	45144181	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ACBD5	10	27195214	27242130	FALSE	638	-0.441875687518437	32	27112127	31908266	0.365165917639896	2	0	0.365165917639896	2	0	4796139	2	18	15	1	FALSE	CNLOH	PASS
659_bTo_pair	ACBD6	1	180269653	180502954	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	ACBD7	10	15077523	15088776	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	4	0	FALSE	CNLOH	PASS
659_bTo_pair	ACCS	11	44065925	44084222	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	ACCSL	11	44047981	44059977	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	ACD	16	67657512	67660815	FALSE	979	-0.429457644119204	34	67645299	68698317	NA	2	NA	NA	2	NA	1053018	NA	33	12	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ACE	17	63477061	63498380	FALSE	1064	-0.419094292936043	39	61867575	63873599	NA	2	NA	NA	2	NA	2006024	NA	24	31	6	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ACE2	23	15561033	15602148	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	18	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	ACER1	19	6306142	6333629	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	ACER2	9	19409059	19452020	FALSE	581	-0.746183084602222	19	10618009	19786745	0.365165917639896	1	0	0.365165917639896	1	0	9168736	1	24	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	ACER3	11	76860867	77026797	FALSE	710	-0.314972965919996	43	76659622	77285059	0.192136715055622	3	NA	0.192136715055622	3	NA	625437	NA	8	11	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	ACHE	7	100889994	100896974	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	ACIN1	14	23058564	23095614	FALSE	850	-0.604709518345526	26	22902059	23302562	NA	2	NA	NA	2	NA	400503	NA	18	29	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ACKR1	1	159203307	159206500	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	ACKR2	3	42804752	42887974	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	ACKR3	2	236567787	236582358	FALSE	190	-0.691419458816616	21	236392006	238848635	0.140309795179477	0	0	0.140309795179477	0	0	2456629	0	22	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ACKR4	3	132597237	132618967	FALSE	242	-0.32037413513609	40	130560427	134790274	0.308149309490068	3	1	0.308149309490068	3	1	4229847	2	29	8	0	FALSE	GAIN	PASS
659_bTo_pair	ACLY	17	41866908	41930542	FALSE	1036	-0.764029118419186	19	41624551	42193564	0.365165917639896	1	0	0.365165917639896	1	0	569013	1	25	29	1	FALSE	HETLOSS	PASS
659_bTo_pair	ACMSD	2	134838547	134902034	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	ACO1	9	32384603	32454769	FALSE	585	-0.464842894155678	32	22447079	32572950	0.365165917639896	2	0	0.365165917639896	2	0	10125871	2	19	20	2	FALSE	CNLOH	PASS
659_bTo_pair	ACO2	22	41469125	41528989	FALSE	1269	-0.443951758803067	34	41205309	42514754	NA	2	NA	NA	2	NA	1309445	NA	31	19	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ACOD1	13	76948497	76958642	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	8	1	FALSE	CNLOH	PASS
659_bTo_pair	ACOT1	14	73537114	73543794	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	ACOT11	1	54542257	54639192	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	28	0	FALSE	DIPLOID	PASS
659_bTo_pair	ACOT12	5	81330005	81394179	FALSE	327	-0.729214269739125	19	80961009	86619409	0.365165917639896	1	0	0.365165917639896	1	0	5658400	1	14	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	ACOT13	6	24667035	24705065	FALSE	373	-0.695027086668472	22	24174718	26017145	0.291335969972972	1	0	0.291335969972972	1	0	1842427	1	23	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	ACOT2	14	73567620	73575658	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ACOT4	14	73591706	73596496	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	ACOT6	14	73610945	73619888	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	ACOT7	1	6264269	6394391	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	ACOT8	20	45841721	45857406	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	ACOT9	23	23702253	23766475	FALSE	1278	-0.021616497728569	55	20155391	23935235	0.328696605851359	4	NA	0.328696605851359	4	NA	3779844	NA	16	16	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ACOX1	17	75941507	75979363	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	15	2	FALSE	DIPLOID	PASS
659_bTo_pair	ACOX2	3	58505136	58537319	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	16	1	FALSE	HETLOSS	PASS
659_bTo_pair	ACOX3	4	8366282	8440723	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	17	1	FALSE	GAIN	PASS
659_bTo_pair	ACOXL	2	110732573	111118222	FALSE	134	-0.415117895462051	39	108786846	111117811	NA	2	NA	NA	2	NA	2330965	NA	16	17	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ACP1	2	264140	278283	FALSE	89	-0.524158836377085	27	41620	3847167	1	2	1	1	2	1	3805547	1	18	6	2	FALSE	DIPLOID	PASS
659_bTo_pair	ACP2	11	47239302	47248906	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	ACP4	19	50790415	50795224	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	ACP5	19	11574660	11579008	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ACP6	1	147629652	147670496	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	ACP7	19	39083913	39111493	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	11	2	FALSE	HETLOSS	PASS
659_bTo_pair	ACPP	3	132317367	132368298	FALSE	242	-0.32037413513609	40	130560427	134790274	0.308149309490068	3	1	0.308149309490068	3	1	4229847	2	29	11	0	FALSE	GAIN	PASS
659_bTo_pair	ACR	22	50738196	50745334	FALSE	1273	-0.594438765059826	26	50738284	50777977	NA	2	NA	NA	2	NA	39693	NA	2	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ACRBP	12	6638075	6647460	FALSE	743	-0.145896859645485	51	6620180	6938488	0.365165917639896	3	NA	0.365165917639896	3	NA	318308	NA	20	12	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	ACRV1	11	125671522	125681123	FALSE	732	-0.497254377564454	34	125672754	127000522	NA	2	NA	NA	2	NA	1327768	NA	19	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ACSBG1	15	78167468	78245688	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	ACSBG2	19	6135247	6193094	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	ACSF2	17	50426158	50474845	FALSE	1053	-0.561829441831031	26	49646906	50626743	NA	2	NA	NA	2	NA	979837	NA	25	23	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ACSF3	16	89088375	89164121	FALSE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	12	5	FALSE	HETLOSS	PASS
659_bTo_pair	ACSL1	4	184755595	184826818	FALSE	305	-0.853036814117495	12	184629284	186555336	0.365165917639896	1	0	0.365165917639896	1	0	1926052	1	22	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	ACSL3	2	222860934	222944639	FALSE	181	-0.697161202800517	22	222304006	224401731	0.291335969972972	1	0	0.291335969972972	1	0	2097725	1	12	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	ACSL4	23	109624244	109733403	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	17	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ACSL5	10	112374018	112428380	FALSE	671	-0.443752838916331	34	110781853	112815244	NA	2	NA	NA	2	NA	2033391	NA	10	21	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ACSL6	5	131949973	132012243	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	23	2	FALSE	HETLOSS	PASS
659_bTo_pair	ACSM1	16	20623237	20698890	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	13	3	FALSE	DIPLOID	PASS
659_bTo_pair	ACSM2A	16	20451461	20487667	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	ACSM2B	16	20536226	20576427	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	13	6	FALSE	DIPLOID	PASS
659_bTo_pair	ACSM3	16	20610243	20797581	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	34	4	FALSE	DIPLOID	PASS
659_bTo_pair	ACSM4	12	7304284	7328724	FALSE	745	-0.243574834353832	44	6965649	8175835	0.345317016959666	3	1	0.345317016959666	3	1	1210186	2	26	13	0	FALSE	GAIN	PASS
659_bTo_pair	ACSM5	16	20409534	20441336	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	ACSM6	10	95194200	95228928	FALSE	663	-0.556688707084635	24	94775074	96952170	0.359751661895656	2	0	0.359751661895656	2	0	2177096	2	21	10	0	FALSE	CNLOH	PASS
659_bTo_pair	ACSS1	20	25006230	25058980	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	18	1	FALSE	DIPLOID	PASS
659_bTo_pair	ACSS2	20	34872146	34927962	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	ACSS3	12	80936414	81261205	FALSE	793	-0.510041181295141	29	76355979	85286979	NA	2	NA	NA	2	NA	8931000	NA	22	19	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ACTA1	1	229431245	229434098	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	ACTA2	10	88935074	88991339	FALSE	658	-0.534531933000134	29	88275028	88948930	NA	2	NA	NA	2	NA	673902	NA	9	20	5	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	ACTB	7	5527147	5563784	FALSE	454	2.1816632292548	108	5501241	5563778	0.364342740527346	31	NA	0.364342740527346	31	NA	62537	NA	2	12	2	FALSE	AMP	PASS
659_bTo_pair	ACTBL2	5	57480016	57482809	FALSE	322	0.828661512211138	75	57481831	58494837	0.364342740527346	10	NA	0.364342740527346	10	NA	1013006	NA	3	5	0	FALSE	AMP	PASS
659_bTo_pair	ACTC1	15	34788095	34795726	FALSE	890	-0.864832779596883	13	34359248	37966686	0.365165917639896	1	0	0.365165917639896	1	0	3607438	1	12	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	ACTG1	17	81509971	81523847	TRUE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	ACTG2	2	73892314	73919865	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	ACTL10	20	33666498	33668525	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	ACTL6A	3	179562880	179588408	FALSE	253	-0.302573270656947	43	179243074	180989661	0.192136715055622	3	NA	0.192136715055622	3	NA	1746587	NA	13	14	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	ACTL6B	7	100643097	100656461	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	ACTL7A	9	108862266	108863759	FALSE	612	0.0995599811352479	59	107491125	108863571	0.308533751035793	5	NA	0.308533751035793	5	NA	1372446	NA	2	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ACTL7B	9	108854589	108856967	FALSE	612	0.0995599811352479	59	107491125	108863571	0.308533751035793	5	NA	0.308533751035793	5	NA	1372446	NA	2	5	1	FALSE	AMP (many states)	PASS
659_bTo_pair	ACTL8	1	17755313	17827063	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	ACTL9	19	8697397	8698822	FALSE	1132	-0.583194501817822	26	7916513	8843246	NA	2	NA	NA	2	NA	926733	NA	25	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ACTN1	14	68874143	68979440	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	23	0	FALSE	DIPLOID	PASS
659_bTo_pair	ACTN2	1	236686454	236764631	FALSE	82	-0.550278310688863	27	235196044	241494870	1	2	1	1	2	1	6298826	1	22	24	5	FALSE	DIPLOID	PASS
659_bTo_pair	ACTN3	11	66546395	66563329	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	23	7	FALSE	GAIN	PASS
659_bTo_pair	ACTN4	19	38647649	38731583	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	26	3	FALSE	HETLOSS	PASS
659_bTo_pair	ACTR10	14	58200080	58235636	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	ACTR1A	10	102461881	102502711	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	23	3	FALSE	CNLOH	PASS
659_bTo_pair	ACTR1B	2	97655963	97664107	FALSE	129	-0.0788460339292772	54	97162194	97739861	0.311828977193897	4	2	0.311828977193897	4	2	577667	2	6	11	2	FALSE	TETRAPLOID	PASS
659_bTo_pair	ACTR2	2	65227753	65271253	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	ACTR3	2	113889960	113962596	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	ACTR3B	7	152759749	152855378	FALSE	509	-0.56054035608462	23	152759958	159144708	0.186356639256811	1	0	0.186356639256811	1	0	6384750	1	20	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	ACTR3C	7	150243916	150323725	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	ACTR5	20	38748442	38772520	FALSE	1205	-0.619744376635615	23	37518926	41023791	0.186356639256811	1	0	0.186356639256811	1	0	3504865	1	19	11	3	FALSE	HETLOSS	PASS
659_bTo_pair	ACTR6	12	100199122	100241865	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	ACTR8	3	53867066	53882202	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	ACTRT1	23	128050962	128052398	FALSE	1333	-0.260466887002759	46	126819804	129920771	0.298322295679939	3	NA	0.298322295679939	3	NA	3100967	NA	9	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ACTRT2	1	3021483	3022903	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	ACTRT3	3	169766921	169769895	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	5	1	FALSE	GAIN	PASS
659_bTo_pair	ACVR1	2	157736444	157875862	FALSE	150	1.57306387475856	91	157736412	157876253	0.364342740527346	19	NA	0.364342740527346	19	NA	139841	NA	1	24	2	FALSE	AMP	PASS
659_bTo_pair	ACVR1B	12	51951667	51997078	FALSE	773	2.16421334155222	107	51951733	51996973	0.364342740527346	30	NA	0.364342740527346	30	NA	45240	NA	1	28	0	FALSE	AMP	PASS
659_bTo_pair	ACVR1C	2	157526767	157629005	FALSE	149	-0.454179855872301	30	147845197	157628657	1	2	1	1	2	1	9783460	1	30	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ACVR2A	2	147844517	147930826	FALSE	149	-0.454179855872301	30	147845197	157628657	1	2	1	1	2	1	9783460	1	30	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	ACVR2B	3	38453851	38493142	FALSE	212	-0.750996176556328	19	38165958	40533064	0.365165917639896	1	0	0.365165917639896	1	0	2367106	1	26	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	ACVRL1	12	51906908	51923361	FALSE	772	-0.61197679162419	26	50109466	51920864	NA	2	NA	NA	2	NA	1811398	NA	27	11	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ACY1	3	51983278	51989202	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	ACY3	11	67642555	67650659	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	8	0	FALSE	GAIN	PASS
659_bTo_pair	ACYP1	14	75053221	75069483	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	ACYP2	2	53970838	54305300	FALSE	110	-0.435434252584523	30	48441014	54599245	1	2	1	1	2	1	6158231	1	18	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	AD000671.1	19	35745678	35754519	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	AD000671.2	19	35739252	35745432	FALSE	1168	1.42277899639017	88	35715274	35739868	0.364342740527346	17	NA	0.364342740527346	17	NA	24594	NA	4	13	1	TRUE	AMP	PASS
659_bTo_pair	ADA	20	44619522	44652233	FALSE	1210	-0.476296426145969	34	43513997	45110019	NA	2	NA	NA	2	NA	1596022	NA	26	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ADA2	22	17178790	17258235	FALSE	1240	-0.594689860601271	26	15528179	18606839	NA	2	NA	NA	2	NA	3078660	NA	21	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ADAD1	4	122378966	122429802	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	ADAD2	16	84191138	84197168	FALSE	987	-0.578642888038652	23	81999201	85806436	0.186356639256811	1	0	0.186356639256811	1	0	3807235	1	31	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	ADAL	15	43330657	43354555	FALSE	900	-0.777056562410308	17	42718512	43401817	0.365165917639896	1	0	0.365165917639896	1	0	683305	1	13	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	ADAM10	15	58588807	58749978	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	ADAM11	17	44759031	44781846	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	23	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ADAM12	10	126012381	126388455	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	25	3	FALSE	CNLOH	PASS
659_bTo_pair	ADAM15	1	155050566	155062775	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	26	0	FALSE	DIPLOID	PASS
659_bTo_pair	ADAM17	2	9488486	9556732	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	ADAM18	8	39584489	39730064	FALSE	536	-0.812766686991614	14	38512585	41896345	0.365165917639896	1	0	0.365165917639896	1	0	3383760	1	19	21	3	FALSE	HETLOSS	PASS
659_bTo_pair	ADAM19	5	157395534	157575775	FALSE	353	-0.698571741790457	22	157138801	161546576	0.291335969972972	1	0	0.291335969972972	1	0	4407775	1	29	35	1	FALSE	HETLOSS	PASS
659_bTo_pair	ADAM2	8	39743735	39838289	FALSE	536	-0.812766686991614	14	38512585	41896345	0.365165917639896	1	0	0.365165917639896	1	0	3383760	1	19	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	ADAM20	14	70522358	70535015	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ADAM21	14	70452157	70459899	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	9	4	FALSE	DIPLOID	PASS
659_bTo_pair	ADAM22	7	87934143	88202889	FALSE	479	-0.448308050861149	30	87602941	92590330	1	2	1	1	2	1	4987389	1	30	32	0	FALSE	DIPLOID	PASS
659_bTo_pair	ADAM23	2	206443539	206621130	FALSE	168	-0.499602545595775	30	203936898	208231285	1	2	1	1	2	1	4294387	1	25	27	1	FALSE	DIPLOID	PASS
659_bTo_pair	ADAM28	8	24294040	24359018	FALSE	520	-0.862302460890099	13	23703081	26040940	0.365165917639896	1	0	0.365165917639896	1	0	2337859	1	12	23	1	FALSE	HETLOSS	PASS
659_bTo_pair	ADAM29	4	174829668	174978180	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	ADAM30	1	119893533	119896495	FALSE	43	-0.890933866500247	13	117628427	119906570	0.365165917639896	1	0	0.365165917639896	1	0	2278143	1	13	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	ADAM32	8	39106990	39284911	FALSE	536	-0.812766686991614	14	38512585	41896345	0.365165917639896	1	0	0.365165917639896	1	0	3383760	1	19	25	1	FALSE	HETLOSS	PASS
659_bTo_pair	ADAM33	20	3667965	3682246	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	22	4	FALSE	HETLOSS	PASS
659_bTo_pair	ADAM7	8	24440930	24526970	FALSE	520	-0.862302460890099	13	23703081	26040940	0.365165917639896	1	0	0.365165917639896	1	0	2337859	1	12	23	0	FALSE	HETLOSS	PASS
659_bTo_pair	ADAM8	10	133262403	133276868	FALSE	676	-0.612597388333807	25	132187132	133626712	0.365165917639896	1	0	0.365165917639896	1	0	1439580	1	27	23	0	FALSE	HETLOSS	PASS
659_bTo_pair	ADAM9	8	38996869	39105144	FALSE	536	-0.812766686991614	14	38512585	41896345	0.365165917639896	1	0	0.365165917639896	1	0	3383760	1	19	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	ADAMDEC1	8	24384285	24406013	FALSE	520	-0.862302460890099	13	23703081	26040940	0.365165917639896	1	0	0.365165917639896	1	0	2337859	1	12	14	1	FALSE	HETLOSS	PASS
659_bTo_pair	ADAMTS1	21	26835747	26845409	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	ADAMTS10	19	8580242	8610735	FALSE	1132	-0.583194501817822	26	7916513	8843246	NA	2	NA	NA	2	NA	926733	NA	25	26	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ADAMTS12	5	33523535	33892192	FALSE	312	-0.206081392785099	47	24487677	35857105	0.365165917639896	3	1	0.365165917639896	3	1	11369428	2	27	31	3	FALSE	GAIN	PASS
659_bTo_pair	ADAMTS13	9	133414358	133459402	FALSE	627	-0.867007674319489	12	132986776	134157867	0.365165917639896	1	0	0.365165917639896	1	0	1171091	1	28	40	0	FALSE	HETLOSS	PASS
659_bTo_pair	ADAMTS14	10	70672803	70762441	FALSE	651	-0.523280686314431	28	68722553	70760843	0.351300687168522	2	0	0.351300687168522	2	0	2038290	2	27	27	1	FALSE	CNLOH	PASS
659_bTo_pair	ADAMTS15	11	130448974	130476641	FALSE	734	-0.516486951202814	27	128842412	134387591	1	2	1	1	2	1	5545179	1	27	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	ADAMTS16	5	5140330	5320304	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	28	3	FALSE	GAIN	PASS
659_bTo_pair	ADAMTS17	15	99971589	100342005	FALSE	933	-0.918772702357227	12	98968746	101922991	0.365165917639896	1	0	0.365165917639896	1	0	2954245	1	21	25	3	FALSE	HETLOSS	PASS
659_bTo_pair	ADAMTS18	16	77247813	77435114	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	26	0	FALSE	DIPLOID	PASS
659_bTo_pair	ADAMTS19	5	129460265	129738683	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	27	0	FALSE	HETLOSS	PASS
659_bTo_pair	ADAMTS2	5	179110851	179345430	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	25	6	FALSE	HETLOSS	PASS
659_bTo_pair	ADAMTS20	12	43353866	43551921	FALSE	764	-0.478463991093384	34	40959192	45805435	NA	2	NA	NA	2	NA	4846243	NA	16	42	4	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ADAMTS3	4	72280969	72569386	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	25	2	FALSE	DIPLOID	PASS
659_bTo_pair	ADAMTS4	1	161184308	161199056	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	ADAMTS5	21	26917912	26966513	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	ADAMTS6	5	65148736	65481920	FALSE	323	-0.645106866010582	25	58495036	67196614	0.365165917639896	1	0	0.365165917639896	1	0	8701578	1	31	25	1	FALSE	HETLOSS	PASS
659_bTo_pair	ADAMTS7	15	78759203	78811431	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	32	13	FALSE	HETLOSS	PASS
659_bTo_pair	ADAMTS8	11	130404925	130428993	FALSE	734	-0.516486951202814	27	128842412	134387591	1	2	1	1	2	1	5545179	1	27	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	ADAMTS9	3	64515654	64688000	FALSE	228	-0.860828429618822	13	64010871	69385924	0.365165917639896	1	0	0.365165917639896	1	0	5375053	1	16	42	0	FALSE	HETLOSS	PASS
659_bTo_pair	ADAMTSL1	9	17906563	18910950	FALSE	581	-0.746183084602222	19	10618009	19786745	0.365165917639896	1	0	0.365165917639896	1	0	9168736	1	24	37	5	FALSE	HETLOSS	PASS
659_bTo_pair	ADAMTSL2	9	133532164	133575519	FALSE	627	-0.867007674319489	12	132986776	134157867	0.365165917639896	1	0	0.365165917639896	1	0	1171091	1	28	20	1	FALSE	HETLOSS	PASS
659_bTo_pair	ADAMTSL3	15	83654086	84039842	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	36	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ADAMTSL4	1	150549369	150560937	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	25	1	TRUE	DIPLOID	PASS
659_bTo_pair	ADAMTSL5	19	1505018	1513604	FALSE	1116	-0.668595541323287	22	1229189	1605424	0.291335969972972	1	0	0.291335969972972	1	0	376235	1	21	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	ADAP1	7	897901	955407	FALSE	450	-0.329551508654045	40	193185	2379492	0.308149309490068	3	1	0.308149309490068	3	1	2186307	2	26	13	1	FALSE	GAIN	PASS
659_bTo_pair	ADAP2	17	30906344	30959322	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	ADAR	1	154582057	154628013	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	23	0	FALSE	DIPLOID	PASS
659_bTo_pair	ADARB1	21	45073853	45226560	FALSE	1239	-0.568555801579827	23	44960223	46664365	0.186356639256811	1	0	0.186356639256811	1	0	1704142	1	18	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	ADARB2	10	1177318	1737476	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	16	2	FALSE	CNLOH	PASS
659_bTo_pair	ADAT1	16	75596981	75623300	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	ADAT2	6	143422832	143450673	FALSE	431	-0.504239059693729	30	143136912	149638436	1	2	1	1	2	1	6501524	1	29	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	ADAT3	19	1905378	1913447	FALSE	1118	-0.58059819545476	23	1775405	2151345	0.186356639256811	1	0	0.186356639256811	1	0	375940	1	13	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	ADCK1	14	77800083	77935012	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	ADCK2	7	140673153	140696261	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	ADCK5	8	144373101	144393242	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	ADCY1	7	45574140	45723116	FALSE	464	-0.323591849229323	42	45157835	48245556	0.189552622934988	3	0	0.189552622934988	3	0	3087721	3	12	24	3	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	ADCY10	1	167809388	167914215	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	34	2	FALSE	DIPLOID	PASS
659_bTo_pair	ADCY2	5	7396208	7830081	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	26	2	FALSE	GAIN	PASS
659_bTo_pair	ADCY3	2	24819169	24919839	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	26	4	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ADCY4	14	24318349	24335093	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	26	2	FALSE	DIPLOID	PASS
659_bTo_pair	ADCY5	3	123282296	123449758	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	26	3	FALSE	GAIN	PASS
659_bTo_pair	ADCY6	12	48766194	48789037	FALSE	768	-0.491963868457131	34	48045387	49018767	NA	2	NA	NA	2	NA	973380	NA	28	26	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ADCY7	16	50246137	50318135	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	27	1	FALSE	DIPLOID	PASS
659_bTo_pair	ADCY8	8	130780301	131042426	FALSE	565	-0.282741903777565	44	129748604	134610527	0.345317016959666	3	1	0.345317016959666	3	1	4861923	2	18	23	1	FALSE	GAIN	PASS
659_bTo_pair	ADCY9	16	3953387	4116185	FALSE	947	1.55538543666861	91	3725263	3966942	0.364342740527346	19	NA	0.364342740527346	19	NA	241679	NA	2	22	1	TRUE	AMP	PASS
659_bTo_pair	ADCYAP1	18	904943	912172	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	4	0	FALSE	GAIN	PASS
659_bTo_pair	ADCYAP1R1	7	31052461	31111479	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	16	0	FALSE	GAIN	PASS
659_bTo_pair	ADD1	4	2843857	2930076	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	18	2	FALSE	GAIN	PASS
659_bTo_pair	ADD2	2	70607618	70768225	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	ADD3	10	109996368	110135565	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	15	0	FALSE	CNLOH	PASS
659_bTo_pair	ADGB	6	146598965	146815462	FALSE	431	-0.504239059693729	30	143136912	149638436	1	2	1	1	2	1	6501524	1	29	37	7	FALSE	DIPLOID	PASS
659_bTo_pair	ADGRA1	10	133070929	133131675	FALSE	676	-0.612597388333807	25	132187132	133626712	0.365165917639896	1	0	0.365165917639896	1	0	1439580	1	27	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	ADGRA2	8	37784191	37844896	FALSE	531	1.03318219495514	81	37796929	37844954	0.364342740527346	12	NA	0.364342740527346	12	NA	48025	NA	2	39	2	FALSE	AMP	PASS
659_bTo_pair	ADGRA3	4	22345071	22516054	FALSE	278	-0.217595572850614	44	20704713	38137253	0.345317016959666	3	1	0.345317016959666	3	1	17432540	2	29	24	3	FALSE	GAIN	PASS
659_bTo_pair	ADGRB1	8	142449430	142545009	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	36	3	FALSE	DIPLOID	PASS
659_bTo_pair	ADGRB2	1	31727117	31764893	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	38	0	FALSE	DIPLOID	PASS
659_bTo_pair	ADGRB3	6	68635367	69389511	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	35	0	FALSE	DIPLOID	PASS
659_bTo_pair	ADGRD1	12	130953907	131141469	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	27	3	FALSE	DIPLOID	PASS
659_bTo_pair	ADGRE1	19	6887566	6940459	FALSE	1128	-0.566723388755247	23	6665178	7083719	0.186356639256811	1	0	0.186356639256811	1	0	418541	1	13	21	4	FALSE	HETLOSS	PASS
659_bTo_pair	ADGRE2	19	14732393	14778541	FALSE	1149	-0.413849407553013	38	14562540	15157819	0.164051638880412	2	0	0.164051638880412	2	0	595279	2	17	20	7	FALSE	CNLOH	PASS
659_bTo_pair	ADGRE3	19	14619117	14690027	FALSE	1149	-0.413849407553013	38	14562540	15157819	0.164051638880412	2	0	0.164051638880412	2	0	595279	2	17	15	1	FALSE	CNLOH	PASS
659_bTo_pair	ADGRE5	19	14380501	14408725	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	20	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	ADGRF1	6	46997703	47042363	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	ADGRF2	6	47656436	47697797	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	ADGRF3	2	26308173	26346817	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	22	1	FALSE	DIPLOID	PASS
659_bTo_pair	ADGRF4	6	47685864	47722021	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	ADGRF5	6	46852512	46954943	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	26	0	FALSE	DIPLOID	PASS
659_bTo_pair	ADGRG1	16	57610652	57665580	FALSE	971	-0.537344591536493	29	57069860	57923335	NA	2	NA	NA	2	NA	853475	NA	21	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ADGRG2	23	18989309	19122637	FALSE	1276	0.0763243231691416	59	15827382	20064777	0.308533751035793	5	NA	0.308533751035793	5	NA	4237395	NA	24	30	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ADGRG3	16	57668187	57689378	FALSE	971	-0.537344591536493	29	57069860	57923335	NA	2	NA	NA	2	NA	853475	NA	21	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ADGRG4	23	136300963	136416888	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	50	4	FALSE	GAIN (many states)	PASS
659_bTo_pair	ADGRG5	16	57542421	57591681	FALSE	971	-0.537344591536493	29	57069860	57923335	NA	2	NA	NA	2	NA	853475	NA	21	13	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ADGRG6	6	142301854	142446266	FALSE	429	-0.412609995390511	39	138092232	142443520	NA	2	NA	NA	2	NA	4351288	NA	18	32	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ADGRG7	3	100609589	100695479	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	18	1	FALSE	GAIN	PASS
659_bTo_pair	ADGRL1	19	14147743	14206187	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	32	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ADGRL2	1	81306160	81992436	FALSE	27	-0.365760579101575	39	77969065	85252731	NA	2	NA	NA	2	NA	7283666	NA	23	32	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ADGRL3	4	61201258	62078335	FALSE	285	-0.676685623676823	22	55346376	64409389	0.291335969972972	1	0	0.291335969972972	1	0	9063013	1	23	33	1	FALSE	HETLOSS	PASS
659_bTo_pair	ADGRL4	1	78889764	79006718	FALSE	27	-0.365760579101575	39	77969065	85252731	NA	2	NA	NA	2	NA	7283666	NA	23	18	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ADGRV1	5	90529344	91164437	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	125	9	FALSE	HETLOSS	PASS
659_bTo_pair	ADH1A	4	99276367	99291028	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ADH1B	4	99304964	99352760	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	18	3	FALSE	DIPLOID	PASS
659_bTo_pair	ADH1C	4	99336492	99353027	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	ADH4	4	99123657	99157792	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	ADH5	4	99070978	99088801	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	ADH6	4	99202638	99219537	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	ADH7	4	99412261	99435737	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	ADHFE1	8	66432486	66468907	FALSE	550	-0.186881774239562	48	60208949	67746087	0.365165917639896	3	NA	0.365165917639896	3	NA	7537138	NA	33	14	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	ADI1	2	3497361	3519736	FALSE	89	-0.524158836377085	27	41620	3847167	1	2	1	1	2	1	3805547	1	18	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	ADIG	20	38581195	38588463	FALSE	1205	-0.619744376635615	23	37518926	41023791	0.186356639256811	1	0	0.186356639256811	1	0	3504865	1	19	2	1	FALSE	HETLOSS	PASS
659_bTo_pair	ADIPOQ	3	186842690	186858463	FALSE	265	-0.393829618143586	39	186790414	187702028	NA	2	NA	NA	2	NA	911614	NA	9	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ADIPOR1	1	202940823	202958572	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ADIPOR2	12	1688574	1788678	FALSE	739	-0.369471841682825	39	1104785	3873202	NA	2	NA	NA	2	NA	2768417	NA	20	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ADIRF	10	86968192	86983934	FALSE	656	-0.313191165123093	43	86936767	87862427	0.192136715055622	3	NA	0.192136715055622	3	NA	925660	NA	12	3	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	ADK	10	74151185	74709303	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	12	0	FALSE	CNLOH	PASS
659_bTo_pair	ADM	11	10304680	10307397	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	ADM2	22	50481556	50486440	FALSE	1272	-0.260847831900416	46	50286270	50731222	0.298322295679939	3	NA	0.298322295679939	3	NA	444952	NA	19	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ADM5	19	49688664	49690575	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	ADNP	20	50888916	50931421	FALSE	1218	-0.459978768286429	34	50587211	53185754	NA	2	NA	NA	2	NA	2598543	NA	12	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ADNP2	18	80109031	80147523	FALSE	1113	-0.883471952658051	12	75410842	80247341	0.365165917639896	1	0	0.365165917639896	1	0	4836499	1	17	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	ADO	10	62804857	62808483	FALSE	648	1.59189026994828	93	62805132	62815942	0.364342740527346	19	NA	0.364342740527346	19	NA	10810	NA	2	4	1	FALSE	AMP	PASS
659_bTo_pair	ADORA1	1	203090654	203167405	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	ADORA2A	22	24417879	24442360	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	6	0	FALSE	CNLOH	PASS
659_bTo_pair	ADORA2B	17	15944917	15975746	FALSE	1009	-0.493836167698037	33	12666172	16027364	0.344071079426502	2	0	0.344071079426502	2	0	3361192	2	21	5	0	FALSE	CNLOH	PASS
659_bTo_pair	ADORA3	1	111499429	111503760	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	ADPGK	15	72751369	72785846	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	ADPRH	3	119579268	119589945	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	6	0	FALSE	GAIN	PASS
659_bTo_pair	ADPRHL1	13	113399610	113453524	FALSE	846	-0.38711803760524	39	113325636	114000814	NA	2	NA	NA	2	NA	675178	NA	11	26	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ADPRHL2	1	36088875	36093932	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	ADPRM	17	10697594	10711233	FALSE	1006	-0.894220729735546	12	8370429	10825247	0.365165917639896	1	0	0.365165917639896	1	0	2454818	1	31	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	ADRA1A	8	26748150	26867273	FALSE	522	-0.616914645700195	26	26383178	27467373	NA	2	NA	NA	2	NA	1084195	NA	8	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ADRA1B	5	159865080	159972544	FALSE	353	-0.698571741790457	22	157138801	161546576	0.291335969972972	1	0	0.291335969972972	1	0	4407775	1	29	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	ADRA1D	20	4220631	4249074	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ADRA2A	10	111077163	111080907	FALSE	671	-0.443752838916331	34	110781853	112815244	NA	2	NA	NA	2	NA	2033391	NA	10	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ADRA2B	2	96112875	96116245	FALSE	126	-0.498143911483876	34	95935616	96208449	NA	2	NA	NA	2	NA	272833	NA	6	6	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ADRA2C	4	3766348	3768526	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	5	2	FALSE	GAIN	PASS
659_bTo_pair	ADRB1	10	114044056	114046908	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	6	1	FALSE	CNLOH	PASS
659_bTo_pair	ADRB2	5	148825245	148828687	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	6	3	FALSE	HETLOSS	PASS
659_bTo_pair	ADRB3	8	37962991	37966965	FALSE	532	-0.898955944857558	13	37845201	38269206	0.365165917639896	1	0	0.365165917639896	1	0	424005	1	12	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	ADRM1	20	62302093	62308862	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ADSL	22	40346500	40390463	FALSE	1267	-0.448885551917151	34	39313004	41087696	NA	2	NA	NA	2	NA	1774692	NA	24	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ADSS	1	244408494	244452134	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	ADSSL1	14	104724186	104747325	FALSE	883	-0.69016701050987	21	103712930	104759455	0.140309795179477	0	0	0.140309795179477	0	0	1046525	0	14	16	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ADTRP	6	11712054	11807046	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	AEBP1	7	44104361	44114562	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	24	0	FALSE	GAIN	PASS
659_bTo_pair	AEBP2	12	19404045	19720801	FALSE	755	-0.347739111320178	43	18683333	21462024	0.192136715055622	3	NA	0.192136715055622	3	NA	2778691	NA	14	12	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	AEN	15	88621296	88632282	FALSE	923	-0.958549275925123	11	88459674	89218937	0.289956079954009	0	0	0.289956079954009	0	0	759263	0	11	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	AES	19	3052910	3063107	FALSE	1120	-0.63588318052236	23	2233887	3062886	0.186356639256811	1	0	0.186356639256811	1	0	828999	1	28	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	AF241726.2	23	37349330	38687674	FALSE	1285	0.80616134695852	75	36379429	37572383	0.364342740527346	10	NA	0.364342740527346	10	NA	1192954	NA	5	107	0	TRUE	AMP	PASS
659_bTo_pair	AFAP1	4	7758714	7939926	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	21	1	FALSE	GAIN	PASS
659_bTo_pair	AFAP1L1	5	149271871	149341802	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	AFAP1L2	10	114294824	114404756	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	24	0	FALSE	CNLOH	PASS
659_bTo_pair	AFDN	6	167826922	167972023	FALSE	449	-0.520973998932362	27	167374374	170584540	1	2	1	1	2	1	3210166	1	18	40	3	FALSE	DIPLOID	PASS
659_bTo_pair	AFF1	4	86935002	87141054	FALSE	291	-0.458701040497953	34	83536708	87613131	NA	2	NA	NA	2	NA	4076423	NA	17	27	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AFF2	23	148500619	149000663	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	30	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	AFF3	2	99545419	100142739	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	29	3	FALSE	DIPLOID	PASS
659_bTo_pair	AFF4	5	132875379	132963634	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	25	0	FALSE	HETLOSS	PASS
659_bTo_pair	AFG1L	6	108294894	108526796	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	AFG3L2	18	12328944	12377314	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	19	3	FALSE	GAIN	PASS
659_bTo_pair	AFM	4	73481683	73504001	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	AFMID	17	78187317	78207701	FALSE	1080	-0.537824093701074	27	76741010	78870935	1	2	1	1	2	1	2129925	1	20	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	AFP	4	73431138	73456174	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	AFTPH	2	64524305	64593005	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	AGA	4	177430770	177442503	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	AGAP1	2	235494089	236131800	FALSE	189	-0.580904316133535	23	233779383	236380649	0.186356639256811	1	0	0.186356639256811	1	0	2601266	1	10	21	3	FALSE	HETLOSS	PASS
659_bTo_pair	AGAP2	12	57723761	57742157	FALSE	784	-0.466944625057294	34	57694895	57747296	NA	2	NA	NA	2	NA	52401	NA	3	24	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AGAP3	7	151085831	151144436	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	25	1	FALSE	HETLOSS	PASS
659_bTo_pair	AGAP4	10	45825594	45853875	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	11	1	FALSE	CNLOH	PASS
659_bTo_pair	AGAP5	10	73674285	73698159	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	12	0	FALSE	CNLOH	PASS
659_bTo_pair	AGAP6	10	49982190	50010499	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	14	0	FALSE	CNLOH	PASS
659_bTo_pair	AGAP9	10	47501854	47523638	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	2	0	FALSE	CNLOH	PASS
659_bTo_pair	AGBL1	15	86079973	87029052	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	27	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	AGBL2	11	47659591	47715389	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	21	1	FALSE	DIPLOID	PASS
659_bTo_pair	AGBL3	7	134986508	135147963	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	AGBL4	1	48532855	50023913	FALSE	17	-0.451021898823112	34	48472019	50857895	NA	2	NA	NA	2	NA	2385876	NA	6	23	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AGBL5	2	27042364	27070622	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	AGER	6	32180968	32184324	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	11	2	FALSE	HETLOSS	PASS
659_bTo_pair	AGFG1	2	227472152	227561214	FALSE	186	-0.695736902539597	22	226867246	227993567	0.291335969972972	1	0	0.291335969972972	1	0	1126321	1	19	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	AGFG2	7	100539211	100568219	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	AGGF1	5	77029251	77065234	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	AGK	7	141551189	141655244	FALSE	500	-0.745042700177313	19	140929950	142218464	0.365165917639896	1	0	0.365165917639896	1	0	1288514	1	15	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	AGL	1	99850084	99924023	FALSE	31	-0.34979279123772	43	94820443	100270584	0.192136715055622	3	NA	0.192136715055622	3	NA	5450141	NA	22	36	3	FALSE	GAIN (many states)	PASS
659_bTo_pair	AGMAT	1	15572353	15585110	FALSE	6	-0.41295085321191	39	13779356	15847467	NA	2	NA	NA	2	NA	2068111	NA	18	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AGMO	7	15200318	15562015	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	13	0	FALSE	GAIN	PASS
659_bTo_pair	AGO1	1	35869808	35930528	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	AGO2	8	140520156	140635619	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	20	2	FALSE	DIPLOID	PASS
659_bTo_pair	AGO3	1	35930718	36072500	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	AGO4	1	35808172	35857890	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	AGPAT1	6	32168212	32178096	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	AGPAT2	9	136673143	136687423	FALSE	631	-1.04738377038343	8	136673897	136866235	0.342391532111247	0	0	0.342391532111247	0	0	192338	0	15	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	AGPAT3	21	43865186	43986536	FALSE	1234	-0.544212636077936	27	41740855	44141314	1	2	1	1	2	1	2400459	1	31	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	AGPAT4	6	161129979	161274061	FALSE	445	0.567075882616504	69	160991940	163563366	0.364342740527346	8	NA	0.364342740527346	8	NA	2571426	NA	5	8	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	AGPAT5	8	6708357	6759666	FALSE	510	-0.906181747703467	12	166288	7823395	0.365165917639896	1	0	0.365165917639896	1	0	7657107	1	48	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	AGPS	2	177392644	177559299	FALSE	154	1.70320810178303	96	177218720	177392822	0.364342740527346	21	NA	0.364342740527346	21	NA	174102	NA	3	29	1	TRUE	AMP	PASS
659_bTo_pair	AGR2	7	16791811	16833433	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	7	1	FALSE	GAIN	PASS
659_bTo_pair	AGR3	7	16859405	16881987	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	7	1	FALSE	GAIN	PASS
659_bTo_pair	AGRN	1	1020123	1056118	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	47	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	AGRP	16	67482571	67483813	FALSE	976	-0.467350965811123	34	67110264	67538977	NA	2	NA	NA	2	NA	428713	NA	24	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AGT	1	230702523	230714297	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	AGTPBP1	9	85546539	85742029	FALSE	604	-0.547885090101936	27	85547201	90613824	1	2	1	1	2	1	5066623	1	21	29	0	FALSE	DIPLOID	PASS
659_bTo_pair	AGTR1	3	148697784	148743008	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	7	1	FALSE	GAIN	PASS
659_bTo_pair	AGTR2	23	116170722	116174972	FALSE	1326	0.081501992784242	59	111246621	119452040	0.308533751035793	5	NA	0.308533751035793	5	NA	8205419	NA	28	5	1	FALSE	AMP (many states)	PASS
659_bTo_pair	AGTRAP	1	11736084	11754802	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	AGXT	2	240868479	240880502	FALSE	194	-0.588828356865968	23	240025214	241817025	0.186356639256811	1	0	0.186356639256811	1	0	1791811	1	34	12	4	FALSE	HETLOSS	PASS
659_bTo_pair	AGXT2	5	34998101	35048135	FALSE	312	-0.206081392785099	47	24487677	35857105	0.365165917639896	3	1	0.365165917639896	3	1	11369428	2	27	14	2	FALSE	GAIN	PASS
659_bTo_pair	AHCTF1	1	246839098	246931967	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	45	2	FALSE	DIPLOID	PASS
659_bTo_pair	AHCY	20	34280268	34311802	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	AHCYL1	1	109984686	110023741	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	AHCYL2	7	129225023	129430211	FALSE	493	1.58426434903535	93	129167447	129225099	0.364342740527346	19	NA	0.364342740527346	19	NA	57652	NA	3	20	0	TRUE	AMP	PASS
659_bTo_pair	AHDC1	1	27534035	27604431	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	AHI1	6	135283532	135497776	FALSE	427	-0.614116824618693	26	135285680	137161691	NA	2	NA	NA	2	NA	1876011	NA	10	30	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AHNAK	11	62433542	62556235	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	72	2	TRUE	GAIN	PASS
659_bTo_pair	AHNAK2	14	104937244	104978357	FALSE	885	-0.488568816150345	30	104868462	105529782	1	2	1	1	2	1	661320	1	18	70	27	FALSE	DIPLOID	PASS
659_bTo_pair	AHR	7	16916359	17346152	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	15	0	FALSE	GAIN	PASS
659_bTo_pair	AHRR	5	304176	438291	FALSE	308	-0.255094097331532	44	92297	1246091	0.345317016959666	3	1	0.345317016959666	3	1	1153794	2	18	18	2	FALSE	GAIN	PASS
659_bTo_pair	AHSA1	14	77457870	77469474	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	AHSG	3	186612923	186621318	FALSE	263	-0.396590537714608	39	186161612	186743777	NA	2	NA	NA	2	NA	582165	NA	9	8	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AHSP	16	31527864	31528803	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	AICDA	12	8602166	8612871	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	AIDA	1	222668013	222713210	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	AIF1	6	31615184	31617021	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	AIF1L	9	131096476	131123152	FALSE	623	-1.10575778455414	8	130893790	131117796	0.342391532111247	0	0	0.342391532111247	0	0	224006	0	4	7	1	TRUE	HOMDEL	PASS
659_bTo_pair	AIFM1	23	130129362	130165887	FALSE	1335	0.100243493544559	59	130066940	134244999	0.308533751035793	5	NA	0.308533751035793	5	NA	4178059	NA	21	18	0	FALSE	AMP (many states)	PASS
659_bTo_pair	AIFM2	10	70098223	70132934	FALSE	651	-0.523280686314431	28	68722553	70760843	0.351300687168522	2	0	0.351300687168522	2	0	2038290	2	27	11	3	FALSE	CNLOH	PASS
659_bTo_pair	AIFM3	22	20965108	20981360	FALSE	1244	-0.523219331579928	29	20967974	20980970	NA	2	NA	NA	2	NA	12996	NA	1	20	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AIG1	6	143060496	143340304	FALSE	430	1.65255482464458	96	142751538	143061074	0.364342740527346	20	NA	0.364342740527346	20	NA	309536	NA	2	8	0	TRUE	AMP	PASS
659_bTo_pair	AIM2	1	159062484	159147096	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	AIMP1	4	106315544	106349226	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	7	2	FALSE	DIPLOID	PASS
659_bTo_pair	AIMP2	7	6009245	6023834	FALSE	455	0.0869447764468888	59	5592963	6026819	0.308533751035793	5	NA	0.308533751035793	5	NA	433856	NA	8	6	1	FALSE	AMP (many states)	PASS
659_bTo_pair	AIP	11	67483041	67491103	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	8	0	FALSE	GAIN	PASS
659_bTo_pair	AIPL1	17	6393693	6435199	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	AIRE	21	44285838	44298648	FALSE	1236	-0.500794339727727	30	44229616	44592452	1	2	1	1	2	1	362836	1	14	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	AJAP1	1	4654732	4792534	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	AJM1	9	136844415	136848801	FALSE	631	-1.04738377038343	8	136673897	136866235	0.342391532111247	0	0	0.342391532111247	0	0	192338	0	15	11	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	AJUBA	14	22971174	22982642	FALSE	850	-0.604709518345526	26	22902059	23302562	NA	2	NA	NA	2	NA	400503	NA	18	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AK1	9	127866480	127877743	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	AK2	1	33007940	33080996	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	AK3	9	4709559	4742043	FALSE	574	-0.919846303005392	13	2198627	4849539	0.365165917639896	1	0	0.365165917639896	1	0	2650912	1	11	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	AK4	1	65147549	65232145	FALSE	22	0.349155032374079	65	64833461	65218742	0.364342740527346	6	NA	0.364342740527346	6	NA	385281	NA	2	5	2	TRUE	AMP (many states)	PASS
659_bTo_pair	AK5	1	77282051	77559969	FALSE	25	-0.394411030612058	39	74026891	77942032	NA	2	NA	NA	2	NA	3915141	NA	22	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AK6	5	69350984	69370013	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	AK7	14	96392111	96489427	FALSE	876	-0.546199181806584	27	96039535	102050530	1	2	1	1	2	1	6010995	1	30	18	1	FALSE	DIPLOID	PASS
659_bTo_pair	AK8	9	132725578	132878777	FALSE	625	-0.794391185935477	14	131261330	132889947	0.365165917639896	1	0	0.365165917639896	1	0	1628617	1	17	14	1	FALSE	HETLOSS	PASS
659_bTo_pair	AK9	6	109492856	109691217	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	46	9	FALSE	DIPLOID	PASS
659_bTo_pair	AKAIN1	18	5145285	5197503	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	3	0	FALSE	GAIN	PASS
659_bTo_pair	AKAP1	17	57085092	57121349	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AKAP10	17	19904302	19978343	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	17	0	FALSE	CNLOH	PASS
659_bTo_pair	AKAP11	13	42272153	42323267	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	29	1	FALSE	HETLOSS	PASS
659_bTo_pair	AKAP12	6	151239999	151358557	FALSE	436	-0.261506712442895	46	150866313	151353659	0.298322295679939	3	NA	0.298322295679939	3	NA	487346	NA	2	23	3	FALSE	GAIN (many states)	PASS
659_bTo_pair	AKAP13	15	85380571	85749358	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	54	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	AKAP14	23	119895837	119920716	FALSE	1328	0.070674287613007	59	119603543	121049335	0.308533751035793	5	NA	0.308533751035793	5	NA	1445792	NA	34	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	AKAP2	9	110048598	110172512	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	AKAP3	12	4615508	4649047	FALSE	741	-0.251609480735115	44	4489790	6567957	0.345317016959666	3	1	0.345317016959666	3	1	2078167	2	28	11	1	FALSE	GAIN	PASS
659_bTo_pair	AKAP4	23	50190768	50201013	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	14	0	FALSE	AMP (many states)	PASS
659_bTo_pair	AKAP5	14	64465499	64474503	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	AKAP6	14	32329273	32837681	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	34	3	FALSE	DIPLOID	PASS
659_bTo_pair	AKAP7	6	131135666	131283535	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	AKAP8	19	15353385	15379798	FALSE	1151	-0.245775583538201	44	15355095	15913929	0.345317016959666	3	1	0.345317016959666	3	1	558834	2	15	19	0	FALSE	GAIN	PASS
659_bTo_pair	AKAP8L	19	15380048	15419141	FALSE	1151	-0.245775583538201	44	15355095	15913929	0.345317016959666	3	1	0.345317016959666	3	1	558834	2	15	14	0	FALSE	GAIN	PASS
659_bTo_pair	AKAP9	7	91940867	92110673	FALSE	479	-0.448308050861149	30	87602941	92590330	1	2	1	1	2	1	4987389	1	30	75	10	FALSE	DIPLOID	PASS
659_bTo_pair	AKIP1	11	8911139	8920084	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	AKIRIN1	1	38991223	39006059	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	AKIRIN2	6	87675072	87702209	FALSE	407	-0.739487270214454	18	87337082	88963417	0.180216333675297	0	0	0.180216333675297	0	0	1626335	0	11	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	AKNA	9	114334156	114394405	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	28	0	FALSE	DIPLOID	PASS
659_bTo_pair	AKNAD1	1	108815898	108858228	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	AKR1A1	1	45550543	45570049	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	AKR1B1	7	134442350	134459284	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	AKR1B10	7	134527592	134541408	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	AKR1B15	7	134549136	134579875	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	9	2	FALSE	DIPLOID	PASS
659_bTo_pair	AKR1C1	10	4963253	4983283	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	8	2	FALSE	CNLOH	PASS
659_bTo_pair	AKR1C2	10	4987400	5018031	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	10	0	FALSE	CNLOH	PASS
659_bTo_pair	AKR1C3	10	5035354	5107686	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	10	0	FALSE	CNLOH	PASS
659_bTo_pair	AKR1C4	10	5195462	5218949	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	9	0	FALSE	CNLOH	PASS
659_bTo_pair	AKR1C8P	10	5154140	5185187	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	4	0	FALSE	CNLOH	PASS
659_bTo_pair	AKR1D1	7	138002324	138117986	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	AKR1E2	10	4786629	4848062	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	10	4	FALSE	CNLOH	PASS
659_bTo_pair	AKR7A2	1	19303965	19312146	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	AKR7A3	1	19282558	19289250	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	AKT1	14	104769349	104795751	FALSE	884	1.44902421656918	90	104769372	104802386	0.364342740527346	17	NA	0.364342740527346	17	NA	33014	NA	2	32	5	FALSE	AMP	PASS
659_bTo_pair	AKT1S1	19	49869033	49878459	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	AKT2	19	40230317	40285536	FALSE	1172	1.76590522159792	98	40230329	40285164	0.364342740527346	22	NA	0.364342740527346	22	NA	54835	NA	1	34	4	FALSE	AMP	PASS
659_bTo_pair	AKT3	1	243488233	243851079	FALSE	85	1.82880830314925	100	243488290	243851032	0.364342740527346	23	NA	0.364342740527346	23	NA	362742	NA	2	46	2	FALSE	AMP	PASS
659_bTo_pair	AKTIP	16	53491040	53504411	FALSE	968	-0.505434692233225	30	51151209	56683230	1	2	1	1	2	1	5532021	1	34	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL020996.2	1	25811470	25823744	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL021546.1	12	120438198	120460006	FALSE	810	-0.438737881374958	34	120127967	120903912	NA	2	NA	NA	2	NA	775945	NA	20	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AL021997.3	6	28267121	28281580	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	AL022238.4	22	40346529	40410054	FALSE	1267	-0.448885551917151	34	39313004	41087696	NA	2	NA	NA	2	NA	1774692	NA	24	34	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AL022318.4	22	39014363	39033276	FALSE	1265	-0.53141020507802	29	38041114	39152464	NA	2	NA	NA	2	NA	1111350	NA	31	14	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AL024498.2	6	10747794	10930423	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	46	1	FALSE	DIPLOID	PASS
659_bTo_pair	AL031281.2	1	22025511	22101360	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL031315.1	6	169419969	169702047	FALSE	449	-0.520973998932362	27	167374374	170584540	1	2	1	1	2	1	3210166	1	18	25	5	FALSE	DIPLOID	PASS
659_bTo_pair	AL031708.1	16	1632259	1686715	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	25	4	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	AL031777.3	6	26195595	26199293	FALSE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	AL031847.2	1	6159430	6197757	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL033529.1	1	32465057	32600792	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL034430.1	20	10413520	10431922	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL035078.4	11	31812391	32104665	FALSE	690	-0.499672577426227	34	26697185	32104345	NA	2	NA	NA	2	NA	5407160	NA	20	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AL035425.2	23	108722070	108732687	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	1	0	FALSE	AMP (many states)	PASS
659_bTo_pair	AL035460.1	20	2814968	2818066	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	AL049557.1	1	111722064	111755824	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	AL049629.2	11	33698261	33722467	FALSE	692	-0.391103687852083	35	32583952	33774394	1	2	1	1	2	1	1190442	1	13	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL049634.2	20	1540144	1620009	FALSE	1196	0.0145909737502021	56	1551807	2207199	0.365165917639896	4	NA	0.365165917639896	4	NA	655392	NA	7	15	7	FALSE	GAIN (many states)	PASS
659_bTo_pair	AL049650.1	20	2467212	2508907	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	AL049697.1	6	87408012	87511634	FALSE	407	-0.739487270214454	18	87337082	88963417	0.180216333675297	0	0	0.180216333675297	0	0	1626335	0	11	21	4	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	AL049779.1	14	67659820	67690367	FALSE	862	-0.496151350288089	31	65561584	67816009	1	2	1	1	2	1	2254425	1	17	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL049839.2	14	94592058	94624646	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL049844.1	6	143807092	143844617	FALSE	431	-0.504239059693729	30	143136912	149638436	1	2	1	1	2	1	6501524	1	29	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL049844.3	6	143857318	143938471	FALSE	431	-0.504239059693729	30	143136912	149638436	1	2	1	1	2	1	6501524	1	29	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL080251.1	1	18849273	18921121	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	32	3	FALSE	DIPLOID	PASS
659_bTo_pair	AL096711.2	6	127438406	127519001	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	26	3	FALSE	DIPLOID	PASS
659_bTo_pair	AL096870.1	14	24332310	24337382	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	AL109811.4	1	11012662	11030528	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL109827.1	20	35632340	35674544	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	AL110118.2	14	93184973	93218586	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	AL117339.5	10	38094368	38360098	FALSE	640	-0.421497241268382	32	32269100	43094667	0.365165917639896	2	0	0.365165917639896	2	0	10825567	2	20	10	0	FALSE	CNLOH	PASS
659_bTo_pair	AL117348.2	1	225886696	225924278	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	15	4	FALSE	DIPLOID	PASS
659_bTo_pair	AL121594.1	14	35122549	35317474	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	18	2	FALSE	DIPLOID	PASS
659_bTo_pair	AL121722.1	20	22560553	22584261	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL121753.1	20	35267885	35280043	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL121758.1	20	646626	675800	FALSE	1195	-0.60512265366003	23	87765	1537211	0.186356639256811	1	0	0.186356639256811	1	0	1449446	1	33	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	AL121845.2	20	63738270	63740398	FALSE	1225	-0.32421417626258	43	63733191	64273510	0.192136715055622	3	NA	0.192136715055622	3	NA	540319	NA	22	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	AL121845.3	20	63708864	63739103	FALSE	1224	1.85155133976983	100	63698473	63709121	0.364342740527346	24	NA	0.364342740527346	24	NA	10648	NA	5	15	1	TRUE	AMP	PASS
659_bTo_pair	AL121900.2	20	18567453	18744216	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL132671.2	6	117318211	117573571	FALSE	419	1.49493448109902	89	117317138	117340871	0.364342740527346	18	9	0.364342740527346	18	9	23733	9	2	150	25	TRUE	AMP	PASS
659_bTo_pair	AL132780.3	14	22946270	22982258	FALSE	850	-0.604709518345526	26	22902059	23302562	NA	2	NA	NA	2	NA	400503	NA	18	21	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AL133352.1	10	100505628	100529881	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	15	1	FALSE	CNLOH	PASS
659_bTo_pair	AL133353.2	10	99651595	99732112	FALSE	666	-0.516928660882684	29	98163350	100063639	NA	2	NA	NA	2	NA	1900289	NA	16	25	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AL133410.3	9	35812960	35828732	FALSE	591	0.73474920581053	74	35684233	36036976	0.364342740527346	9	NA	0.364342740527346	9	NA	352743	NA	17	13	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	AL133500.1	23	72301691	72572843	FALSE	1317	0.217996879888221	62	71533297	76176924	0.364342740527346	5	NA	0.364342740527346	5	NA	4643627	NA	35	17	1	FALSE	AMP (many states)	PASS
659_bTo_pair	AL135905.2	6	63572012	63583587	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL136295.1	14	24189157	24213473	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	20	1	FALSE	DIPLOID	PASS
659_bTo_pair	AL136295.3	14	24120956	24131829	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL136295.4	14	24180395	24190416	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	29	3	FALSE	DIPLOID	PASS
659_bTo_pair	AL136295.5	14	24151218	24167402	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL136373.1	1	46532166	46543969	FALSE	16	-0.485631979032023	30	46175602	48453048	1	2	1	1	2	1	2277446	1	32	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL136531.2	20	1317571	1393096	FALSE	1195	-0.60512265366003	23	87765	1537211	0.186356639256811	1	0	0.186356639256811	1	0	1449446	1	33	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	AL138752.2	9	37588413	38068687	FALSE	595	-0.209027397852981	47	37442028	67884575	0.365165917639896	3	1	0.365165917639896	3	1	30442547	2	35	67	6	FALSE	GAIN	PASS
659_bTo_pair	AL139011.2	1	160216800	160285130	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL139142.2	1	173596060	173669837	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	AL139300.1	14	103562962	103685924	FALSE	881	-0.341614784223633	43	103502897	103687181	0.192136715055622	3	NA	0.192136715055622	3	NA	184284	NA	7	22	4	FALSE	GAIN (many states)	PASS
659_bTo_pair	AL139353.1	14	31334312	31457441	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	25	1	FALSE	DIPLOID	PASS
659_bTo_pair	AL157392.5	10	13610047	13655929	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	8	1	FALSE	CNLOH	PASS
659_bTo_pair	AL157935.2	9	127867850	127906022	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	AL159163.1	6	166858094	166956124	FALSE	447	-0.721809212356928	19	165280135	167033904	0.365165917639896	1	0	0.365165917639896	1	0	1753769	1	11	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	AL160269.1	9	96235331	96352058	FALSE	608	-0.541405085979946	27	95522076	99069752	1	2	1	1	2	1	3547676	1	31	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL160272.2	9	117704157	117877478	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL162231.1	9	34664163	34666112	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	3	0	FALSE	CNLOH	PASS
659_bTo_pair	AL162231.3	9	34646645	34657113	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	14	0	FALSE	CNLOH	PASS
659_bTo_pair	AL162377.3	13	51763951	51845159	FALSE	836	-0.444239733377228	32	50956423	72747004	0.365165917639896	2	0	0.365165917639896	2	0	21790581	2	40	17	0	FALSE	CNLOH	PASS
659_bTo_pair	AL162417.1	9	133098121	133163914	FALSE	627	-0.867007674319489	12	132986776	134157867	0.365165917639896	1	0	0.365165917639896	1	0	1171091	1	28	31	3	FALSE	HETLOSS	PASS
659_bTo_pair	AL163195.3	14	20582892	20609795	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL163636.2	14	20684587	20700576	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL353588.1	6	44273194	44378957	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	47	4	FALSE	DIPLOID	PASS
659_bTo_pair	AL355102.2	14	96204844	96263929	FALSE	876	-0.546199181806584	27	96039535	102050530	1	2	1	1	2	1	6010995	1	30	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL355312.5	6	149817937	149896011	FALSE	433	-0.531492105252902	29	149727245	150020184	NA	2	NA	NA	2	NA	292939	NA	9	17	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AL355315.1	10	97584374	97673910	FALSE	664	-0.371799025630062	36	96955124	97864220	0.365165917639896	2	0	0.365165917639896	2	0	909096	2	23	25	0	FALSE	CNLOH	PASS
659_bTo_pair	AL355916.2	14	61529128	61657964	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	AL355987.1	9	136738167	136748453	FALSE	631	-1.04738377038343	8	136673897	136866235	0.342391532111247	0	0	0.342391532111247	0	0	192338	0	15	10	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	AL355987.3	9	136791379	136800595	FALSE	631	-1.04738377038343	8	136673897	136866235	0.342391532111247	0	0	0.342391532111247	0	0	192338	0	15	9	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	AL357673.1	1	54132686	54200073	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL358075.4	1	46043661	46176488	FALSE	15	1.20617486454781	84	46040222	46138125	0.364342740527346	14	NA	0.364342740527346	14	NA	97903	NA	2	26	0	TRUE	AMP	PASS
659_bTo_pair	AL358113.1	9	69035750	69255187	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	34	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL358472.6	1	153975850	153986246	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL358472.7	1	153959151	153975887	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL359736.1	13	23979700	24321031	FALSE	824	-0.820211361281197	14	23365275	27988570	0.365165917639896	1	0	0.365165917639896	1	0	4623295	1	32	28	2	FALSE	HETLOSS	PASS
659_bTo_pair	AL359922.1	9	21802636	22032986	FALSE	583	-0.387007513258167	39	20715331	21839114	NA	2	NA	NA	2	NA	1123783	NA	21	97	3	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	AL360181.3	10	133390834	133420495	FALSE	676	-0.612597388333807	25	132187132	133626712	0.365165917639896	1	0	0.365165917639896	1	0	1439580	1	27	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	AL365205.1	6	41780349	41790141	FALSE	399	-0.575359055127692	26	41736131	41931766	NA	2	NA	NA	2	NA	195635	NA	9	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AL365214.3	6	112236806	112350094	FALSE	415	-0.653130566834058	22	112072832	113860548	0.291335969972972	1	0	0.291335969972972	1	0	1787716	1	6	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	AL365232.1	6	73209746	73263196	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL365273.2	10	95860548	95924844	FALSE	663	-0.556688707084635	24	94775074	96952170	0.359751661895656	2	0	0.359751661895656	2	0	2177096	2	21	7	0	FALSE	CNLOH	PASS
659_bTo_pair	AL391650.1	1	26169516	26171831	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	AL445685.3	1	52020153	52033350	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL449266.1	1	108837660	108963484	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	36	0	FALSE	HETLOSS	PASS
659_bTo_pair	AL451062.3	1	43650149	43931014	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	37	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL512428.1	6	24797373	24809798	FALSE	373	-0.695027086668472	22	24174718	26017145	0.291335969972972	1	0	0.291335969972972	1	0	1842427	1	23	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	AL512506.3	13	43883800	44028526	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	AL512785.2	1	162365407	162383531	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	AL513165.2	9	37512547	37592469	FALSE	595	-0.209027397852981	47	37442028	67884575	0.365165917639896	3	1	0.365165917639896	3	1	30442547	2	35	20	0	FALSE	GAIN	PASS
659_bTo_pair	AL583836.1	10	94688154	94853073	FALSE	662	-0.410954559094016	36	89715119	94762760	0.365165917639896	2	0	0.365165917639896	2	0	5047641	2	33	16	3	TRUE	CNLOH	PASS
659_bTo_pair	AL589666.1	6	85557978	85615234	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL590132.1	1	210858125	211134146	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL590764.2	23	71103987	71111575	FALSE	1313	0.277003378144951	63	70925855	71111565	0.364342740527346	6	NA	0.364342740527346	6	NA	185710	NA	6	14	0	FALSE	AMP (many states)	PASS
659_bTo_pair	AL591806.3	1	160997957	161038962	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	14	2	FALSE	DIPLOID	PASS
659_bTo_pair	AL592490.1	13	61409858	61427849	FALSE	836	-0.444239733377228	32	50956423	72747004	0.365165917639896	2	0	0.365165917639896	2	0	21790581	2	40	12	1	FALSE	CNLOH	PASS
659_bTo_pair	AL603832.3	1	112702614	112711433	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	AL645922.1	6	31927698	31952048	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	37	1	FALSE	HETLOSS	PASS
659_bTo_pair	AL645941.2	6	32937364	32953122	FALSE	386	1.33899290827375	87	32934647	32952978	0.364342740527346	16	NA	0.364342740527346	16	NA	18331	NA	3	14	0	FALSE	AMP	PASS
659_bTo_pair	AL662820.1	6	33321386	33329286	FALSE	390	2.37100587204089	111	33318681	33323048	0.364342740527346	35	NA	0.364342740527346	35	NA	4367	NA	2	3	1	FALSE	AMP	PASS
659_bTo_pair	AL662884.4	6	32150495	32154373	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	AL662899.1	6	31686962	31714072	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	30	0	FALSE	HETLOSS	PASS
659_bTo_pair	AL662899.2	6	31666102	31673546	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	AL669918.1	6	32813767	32838822	FALSE	384	1.23562607887413	84	32741402	32820318	0.364342740527346	14	NA	0.364342740527346	14	NA	78916	NA	4	20	6	TRUE	AMP	PASS
659_bTo_pair	AL672043.1	1	46175486	46176478	FALSE	16	-0.485631979032023	30	46175602	48453048	1	2	1	1	2	1	2277446	1	32	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL672142.1	9	128941478	128957021	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	AL691442.1	1	155063748	155086807	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL713999.1	1	155169409	155187272	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	25	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL807752.6	9	137031241	137040436	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	AL807752.7	9	136977518	136985435	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	AL928654.3	14	105487199	105492267	FALSE	885	-0.488568816150345	30	104868462	105529782	1	2	1	1	2	1	661320	1	18	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	AL929554.1	9	137168854	137171984	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	8	2	FALSE	HETLOSS	PASS
659_bTo_pair	ALAD	9	113386317	113401333	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	ALAS1	3	52198086	52214327	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	13	2	FALSE	HETLOSS	PASS
659_bTo_pair	ALAS2	23	55009055	55031064	FALSE	1303	0.0232492223836125	56	53426353	57488811	0.365165917639896	4	NA	0.365165917639896	4	NA	4062458	NA	32	13	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	ALB	4	73397114	73421412	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	ALCAM	3	105366909	105576900	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	16	2	FALSE	GAIN	PASS
659_bTo_pair	ALDH16A1	19	49453169	49471048	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	19	1	FALSE	HETLOSS	PASS
659_bTo_pair	ALDH18A1	10	95605929	95656706	FALSE	663	-0.556688707084635	24	94775074	96952170	0.359751661895656	2	0	0.359751661895656	2	0	2177096	2	21	17	2	FALSE	CNLOH	PASS
659_bTo_pair	ALDH1A1	9	72900662	73080442	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	13	2	FALSE	DIPLOID	PASS
659_bTo_pair	ALDH1A2	15	57953424	58497866	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	22	1	FALSE	HETLOSS	PASS
659_bTo_pair	ALDH1A3	15	100877714	100916626	FALSE	933	-0.918772702357227	12	98968746	101922991	0.365165917639896	1	0	0.365165917639896	1	0	2954245	1	21	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	ALDH1B1	9	38392664	38398661	FALSE	595	-0.209027397852981	47	37442028	67884575	0.365165917639896	3	1	0.365165917639896	3	1	30442547	2	35	6	1	FALSE	GAIN	PASS
659_bTo_pair	ALDH1L1	3	126103562	126197994	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	25	0	FALSE	GAIN	PASS
659_bTo_pair	ALDH1L2	12	105019784	105084577	FALSE	798	-0.492720037723834	34	102839233	105367537	NA	2	NA	NA	2	NA	2528304	NA	20	24	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ALDH2	12	111766887	111817529	FALSE	802	-0.463173510714366	34	111455064	112408626	NA	2	NA	NA	2	NA	953562	NA	12	13	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ALDH3A1	17	19737984	19748943	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	13	3	FALSE	CNLOH	PASS
659_bTo_pair	ALDH3A2	17	19648136	19677598	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	14	2	FALSE	CNLOH	PASS
659_bTo_pair	ALDH3B1	11	68008578	68029282	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	11	0	FALSE	GAIN	PASS
659_bTo_pair	ALDH3B2	11	67662162	67681200	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	9	0	FALSE	GAIN	PASS
659_bTo_pair	ALDH4A1	1	18871430	18902781	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	15	3	FALSE	DIPLOID	PASS
659_bTo_pair	ALDH5A1	6	24494852	24537207	FALSE	373	-0.695027086668472	22	24174718	26017145	0.291335969972972	1	0	0.291335969972972	1	0	1842427	1	23	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	ALDH6A1	14	74056850	74084493	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	16	2	FALSE	DIPLOID	PASS
659_bTo_pair	ALDH7A1	5	126531200	126595418	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	ALDH8A1	6	134917390	134950122	FALSE	425	-0.901875351716628	13	134918466	135054640	0.365165917639896	1	0	0.365165917639896	1	0	136174	1	2	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	ALDH9A1	1	165662216	165698863	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	ALDOA	16	30064164	30070457	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	ALDOB	9	101420578	101449664	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	ALDOC	17	28573115	28577264	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	ALG1	16	5033923	5087379	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	24	2	FALSE	DIPLOID	PASS
659_bTo_pair	ALG10	12	34022281	34029694	FALSE	760	-0.171000692864655	50	31089058	38321207	0.218007130395584	4	2	0.218007130395584	4	2	7232149	2	15	7	0	FALSE	TETRAPLOID	PASS
659_bTo_pair	ALG10B	12	38316578	38329728	FALSE	760	-0.171000692864655	50	31089058	38321207	0.218007130395584	4	2	0.218007130395584	4	2	7232149	2	15	8	1	TRUE	TETRAPLOID	PASS
659_bTo_pair	ALG11	13	52012398	52032171	FALSE	836	-0.444239733377228	32	50956423	72747004	0.365165917639896	2	0	0.365165917639896	2	0	21790581	2	40	18	0	FALSE	CNLOH	PASS
659_bTo_pair	ALG12	22	49900229	49918458	FALSE	1271	-0.350898193716427	41	45922979	50285791	0.284729887459054	3	0	0.284729887459054	3	0	4362812	3	30	9	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	ALG13	23	111665811	111760649	FALSE	1326	0.081501992784242	59	111246621	119452040	0.308533751035793	5	NA	0.308533751035793	5	NA	8205419	NA	28	30	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ALG14	1	94974407	95072945	FALSE	31	-0.34979279123772	43	94820443	100270584	0.192136715055622	3	NA	0.192136715055622	3	NA	5450141	NA	22	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ALG1L	3	125929275	125937039	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	6	2	FALSE	GAIN	PASS
659_bTo_pair	ALG1L2	3	130081831	130113227	FALSE	240	-0.311262736248051	40	128620554	130098189	0.308149309490068	3	1	0.308149309490068	3	1	1477635	2	22	8	2	FALSE	GAIN	PASS
659_bTo_pair	ALG2	9	99216426	99221956	FALSE	609	1.73110001403399	97	99105196	99221522	0.364342740527346	22	NA	0.364342740527346	22	NA	116326	NA	2	6	0	TRUE	AMP	PASS
659_bTo_pair	ALG3	3	184242301	184249548	FALSE	259	-0.260370931250901	44	183654025	185254015	0.345317016959666	3	1	0.345317016959666	3	1	1599990	2	31	10	0	FALSE	GAIN	PASS
659_bTo_pair	ALG5	13	36949775	37000261	FALSE	830	-0.745621963362667	19	32401848	39788354	0.365165917639896	1	0	0.365165917639896	1	0	7386506	1	30	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	ALG6	1	63367575	63438562	FALSE	21	-0.414935064922519	39	59321678	64830856	NA	2	NA	NA	2	NA	5509178	NA	22	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ALG8	11	78100936	78139660	FALSE	712	-0.188800010767045	48	77590086	86068715	0.365165917639896	3	NA	0.365165917639896	3	NA	8478629	NA	30	14	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	ALG9	11	111782195	111871581	FALSE	723	-0.542672588801529	29	108383083	111912852	NA	2	NA	NA	2	NA	3529769	NA	24	17	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ALK	2	29192774	29921566	FALSE	101	0.953360581038127	78	29192926	29233661	0.364342740527346	11	NA	0.364342740527346	11	NA	40735	NA	1	85	6	TRUE	AMP	PASS
659_bTo_pair	ALKAL1	8	52534037	52565507	FALSE	543	-0.403572692824667	39	47962754	54147613	NA	2	NA	NA	2	NA	6184859	NA	18	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ALKAL2	2	279558	288851	FALSE	89	-0.524158836377085	27	41620	3847167	1	2	1	1	2	1	3805547	1	18	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	ALKBH1	14	77672404	77708020	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ALKBH2	12	109088188	109093631	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	ALKBH3	11	43880811	43920266	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ALKBH4	7	102456238	102464876	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	ALKBH5	17	18183078	18209954	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	6	0	FALSE	CNLOH	PASS
659_bTo_pair	ALKBH6	19	36009120	36014239	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ALKBH7	19	6372433	6375251	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	ALKBH8	11	107502726	107565746	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	ALLC	2	3658195	3702671	FALSE	89	-0.524158836377085	27	41620	3847167	1	2	1	1	2	1	3805547	1	18	11	3	FALSE	DIPLOID	PASS
659_bTo_pair	ALMS1	2	73385758	73610793	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	62	0	FALSE	DIPLOID	PASS
659_bTo_pair	ALOX12	17	6996065	7010736	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	14	3	FALSE	HETLOSS	PASS
659_bTo_pair	ALOX12B	17	8072636	8087716	FALSE	1003	1.16820921393368	83	8047824	8087597	0.364342740527346	13	NA	0.364342740527346	13	NA	39773	NA	2	21	2	FALSE	AMP	PASS
659_bTo_pair	ALOX15	17	4630902	4642294	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	16	3	FALSE	HETLOSS	PASS
659_bTo_pair	ALOX15B	17	8039017	8049134	FALSE	1002	-0.806633716627379	14	7689340	8047671	0.365165917639896	1	0	0.365165917639896	1	0	358331	1	15	15	1	TRUE	HETLOSS	PASS
659_bTo_pair	ALOX5	10	45374176	45446119	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	15	0	FALSE	CNLOH	PASS
659_bTo_pair	ALOX5AP	13	30713478	30764426	FALSE	828	-0.893717680890687	13	28659152	32311865	0.365165917639896	1	0	0.365165917639896	1	0	3652713	1	17	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	ALOXE3	17	8095900	8119047	FALSE	1004	-0.905703364358502	13	8096639	8190110	0.365165917639896	1	0	0.365165917639896	1	0	93471	1	7	20	1	FALSE	HETLOSS	PASS
659_bTo_pair	ALPG	2	232406843	232410714	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	11	5	FALSE	DIPLOID	PASS
659_bTo_pair	ALPI	2	232456123	232460032	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	ALPK1	4	112285509	112442620	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	ALPK2	18	58481247	58628957	FALSE	1105	-0.785555027616249	16	52752095	58670682	0.365165917639896	1	0	0.365165917639896	1	0	5918587	1	19	33	0	FALSE	HETLOSS	PASS
659_bTo_pair	ALPK3	15	84816680	84873482	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	30	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ALPL	1	21509372	21578412	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	ALPP	2	232378534	232382889	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	12	3	FALSE	DIPLOID	PASS
659_bTo_pair	ALS2	2	201700554	201781189	FALSE	166	-0.425780118113581	30	201288659	203854096	1	2	1	1	2	1	2565437	1	22	38	2	FALSE	DIPLOID	PASS
659_bTo_pair	ALS2CL	3	46668997	46693704	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	26	4	FALSE	HETLOSS	PASS
659_bTo_pair	ALS2CR12	2	201288271	201357398	FALSE	166	-0.425780118113581	30	201288659	203854096	1	2	1	1	2	1	2565437	1	22	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	ALX1	12	85280107	85301784	FALSE	793	-0.510041181295141	29	76355979	85286979	NA	2	NA	NA	2	NA	8931000	NA	22	6	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	ALX3	1	110059994	110070700	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	ALX4	11	44260440	44310166	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ALYREF	17	81887844	81891586	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	AMACR	5	33986178	34008108	FALSE	312	-0.206081392785099	47	24487677	35857105	0.365165917639896	3	1	0.365165917639896	3	1	11369428	2	27	8	1	FALSE	GAIN	PASS
659_bTo_pair	AMBN	4	70592256	70607288	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	AMBP	9	114060127	114078472	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	AMBRA1	11	46396414	46594125	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	25	0	FALSE	DIPLOID	PASS
659_bTo_pair	AMD1	6	110874770	110895713	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	AMDHD1	12	95943293	95968716	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	AMDHD2	16	2520357	2531422	FALSE	942	-0.803500535593988	16	2178660	2530995	0.365165917639896	1	0	0.365165917639896	1	0	352335	1	18	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	AMELX	23	11293413	11300761	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	6	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	AMER1	23	64185117	64205744	TRUE	1306	1.43771868016219	88	64182335	64225559	0.364342740527346	17	NA	0.364342740527346	17	NA	43224	NA	2	22	0	FALSE	AMP	PASS
659_bTo_pair	AMER2	13	25161684	25172288	FALSE	824	-0.820211361281197	14	23365275	27988570	0.365165917639896	1	0	0.365165917639896	1	0	4623295	1	32	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	AMER3	2	130755435	130768134	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	AMFR	16	56361452	56425538	FALSE	968	-0.505434692233225	30	51151209	56683230	1	2	1	1	2	1	5532021	1	34	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	AMH	19	2249309	2252073	FALSE	1120	-0.63588318052236	23	2233887	3062886	0.186356639256811	1	0	0.186356639256811	1	0	828999	1	28	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	AMHR2	12	53423855	53431534	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	AMIGO1	1	109504175	109509738	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	AMIGO2	12	47075707	47079951	FALSE	766	-0.557616146966431	26	45922034	47968195	NA	2	NA	NA	2	NA	2046161	NA	13	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AMIGO3	3	49716834	49719695	FALSE	220	-0.761977046834943	19	49697158	49862323	0.365165917639896	1	0	0.365165917639896	1	0	165165	1	9	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	AMMECR1	23	110194186	110440233	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	8	0	FALSE	AMP (many states)	PASS
659_bTo_pair	AMMECR1L	2	127861630	127885922	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	AMN	14	102922656	102933596	FALSE	880	-0.612786833130899	26	102922742	103500099	NA	2	NA	NA	2	NA	577357	NA	7	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AMN1	12	31671137	31729174	FALSE	760	-0.171000692864655	50	31089058	38321207	0.218007130395584	4	2	0.218007130395584	4	2	7232149	2	15	7	0	FALSE	TETRAPLOID	PASS
659_bTo_pair	AMOT	23	112774503	112840815	FALSE	1326	0.081501992784242	59	111246621	119452040	0.308533751035793	5	NA	0.308533751035793	5	NA	8205419	NA	28	18	1	FALSE	AMP (many states)	PASS
659_bTo_pair	AMOTL1	11	94706431	94876753	FALSE	717	-0.427991611956568	34	94512673	100992623	NA	2	NA	NA	2	NA	6479950	NA	19	19	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AMOTL2	3	134355874	134375479	FALSE	242	-0.32037413513609	40	130560427	134790274	0.308149309490068	3	1	0.308149309490068	3	1	4229847	2	29	18	0	FALSE	GAIN	PASS
659_bTo_pair	AMPD1	1	114673090	114695618	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	AMPD2	1	109616104	109632051	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	21	2	FALSE	HETLOSS	PASS
659_bTo_pair	AMPD3	11	10308313	10507579	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	AMPH	7	38383704	38631567	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	23	3	FALSE	GAIN	PASS
659_bTo_pair	AMT	3	49416775	49422753	FALSE	218	-0.900819276070563	13	49413105	49683092	0.365165917639896	1	0	0.365165917639896	1	0	269987	1	7	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	AMTN	4	70518540	70532742	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	AMY1A	1	103655290	103664554	FALSE	32	-0.441874489475641	34	100273343	107324874	NA	2	NA	NA	2	NA	7051531	NA	18	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AMY1B	1	103687415	103696680	FALSE	32	-0.441874489475641	34	100273343	107324874	NA	2	NA	NA	2	NA	7051531	NA	18	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AMY1C	1	103750406	103758690	FALSE	32	-0.441874489475641	34	100273343	107324874	NA	2	NA	NA	2	NA	7051531	NA	18	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AMY2A	1	103616811	103625780	FALSE	32	-0.441874489475641	34	100273343	107324874	NA	2	NA	NA	2	NA	7051531	NA	18	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AMY2B	1	103553815	103579534	FALSE	32	-0.441874489475641	34	100273343	107324874	NA	2	NA	NA	2	NA	7051531	NA	18	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AMZ1	7	2679522	2775500	FALSE	451	-0.380727397700309	39	2432806	2844144	NA	2	NA	NA	2	NA	411338	NA	8	17	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AMZ2	17	68247574	68257164	FALSE	1070	-0.476939588153593	30	65635933	68457397	1	2	1	1	2	1	2821464	1	18	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	ANAPC1	2	111611639	111884690	FALSE	135	2.35781455028401	111	111121109	111769289	0.364342740527346	35	NA	0.364342740527346	35	NA	648180	NA	2	39	8	TRUE	AMP	PASS
659_bTo_pair	ANAPC10	4	144831908	145098541	FALSE	300	-0.423460920061428	34	143186078	151174790	NA	2	NA	NA	2	NA	7988712	NA	32	7	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ANAPC11	17	81890790	81900991	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ANAPC13	3	134477706	134486716	FALSE	242	-0.32037413513609	40	130560427	134790274	0.308149309490068	3	1	0.308149309490068	3	1	4229847	2	29	3	0	FALSE	GAIN	PASS
659_bTo_pair	ANAPC15	11	72106378	72112780	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	8	1	FALSE	GAIN	PASS
659_bTo_pair	ANAPC16	10	72216000	72235860	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	3	0	FALSE	CNLOH	PASS
659_bTo_pair	ANAPC2	9	137174784	137188549	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	17	1	FALSE	HETLOSS	PASS
659_bTo_pair	ANAPC4	4	25377213	25418498	FALSE	278	-0.217595572850614	44	20704713	38137253	0.345317016959666	3	1	0.345317016959666	3	1	17432540	2	29	27	3	FALSE	GAIN	PASS
659_bTo_pair	ANAPC5	12	121308245	121399896	FALSE	812	-0.468438273619664	34	121006302	121793667	NA	2	NA	NA	2	NA	787365	NA	12	18	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ANAPC7	12	110372900	110403730	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	ANG	14	20684177	20698971	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	ANGEL1	14	76786178	76826246	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	ANGEL2	1	212992182	213015826	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	ANGPT1	8	107249482	107498055	FALSE	561	-0.210477706860293	47	102652438	116770243	0.365165917639896	3	1	0.365165917639896	3	1	14117805	2	32	10	0	FALSE	GAIN	PASS
659_bTo_pair	ANGPT2	8	6499651	6563409	FALSE	510	-0.906181747703467	12	166288	7823395	0.365165917639896	1	0	0.365165917639896	1	0	7657107	1	48	12	2	FALSE	HETLOSS	PASS
659_bTo_pair	ANGPT4	20	869899	916317	FALSE	1195	-0.60512265366003	23	87765	1537211	0.186356639256811	1	0	0.186356639256811	1	0	1449446	1	33	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	ANGPTL1	1	178849705	178871052	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	ANGPTL2	9	127087332	127122883	FALSE	619	-0.820686000870706	14	125203036	127778681	0.365165917639896	1	0	0.365165917639896	1	0	2575645	1	23	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ANGPTL3	1	62597487	62606159	FALSE	21	-0.414935064922519	39	59321678	64830856	NA	2	NA	NA	2	NA	5509178	NA	22	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ANGPTL4	19	8363289	8374373	FALSE	1132	-0.583194501817822	26	7916513	8843246	NA	2	NA	NA	2	NA	926733	NA	25	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ANGPTL5	11	101890674	101916522	FALSE	719	-0.636863435721755	26	101453066	102083149	NA	2	NA	NA	2	NA	630083	NA	4	10	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ANGPTL6	19	10092338	10102796	FALSE	1136	-0.657304673205362	21	8981156	10119920	0.140309795179477	0	0	0.140309795179477	0	0	1138764	0	32	9	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ANGPTL7	1	11189341	11195981	FALSE	3	0.297479534180633	63	11098061	11262547	0.364342740527346	6	NA	0.364342740527346	6	NA	164486	NA	3	6	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ANGPTL8	19	11237450	11241943	FALSE	1143	-0.599591757528625	23	11089545	11375998	0.186356639256811	1	0	0.186356639256811	1	0	286453	1	11	9	3	FALSE	HETLOSS	PASS
659_bTo_pair	ANHX	12	133218312	133236095	FALSE	818	-0.324030199616913	43	132687628	133234369	0.192136715055622	3	NA	0.192136715055622	3	NA	546741	NA	14	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ANK1	8	41653220	41896762	FALSE	536	-0.812766686991614	14	38512585	41896345	0.365165917639896	1	0	0.365165917639896	1	0	3383760	1	19	51	6	FALSE	HETLOSS	PASS
659_bTo_pair	ANK2	4	112818109	113383740	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	82	0	FALSE	DIPLOID	PASS
659_bTo_pair	ANK3	10	60026298	60733490	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	82	4	FALSE	CNLOH	PASS
659_bTo_pair	ANKAR	2	189674290	189761193	FALSE	159	-0.50094907723407	34	185815441	189771912	NA	2	NA	NA	2	NA	3956471	NA	17	33	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ANKDD1A	15	64911902	64958700	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	ANKDD1B	5	75611459	75671846	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	ANKEF1	20	9986126	10058303	FALSE	1198	1.13376050176976	83	9532481	10038445	0.364342740527346	13	NA	0.364342740527346	13	NA	505964	NA	2	13	1	TRUE	AMP	PASS
659_bTo_pair	ANKFN1	17	55882301	56511659	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ANKFY1	17	4163907	4263995	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	26	2	FALSE	HETLOSS	PASS
659_bTo_pair	ANKH	5	14704800	14871785	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	13	2	FALSE	GAIN	PASS
659_bTo_pair	ANKHD1	5	140401814	140539856	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	48	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ANKHD1-EIF4EBP3	5	140401908	140549569	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	52	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ANKIB1	7	92246234	92401384	FALSE	479	-0.448308050861149	30	87602941	92590330	1	2	1	1	2	1	4987389	1	30	21	1	FALSE	DIPLOID	PASS
659_bTo_pair	ANKK1	11	113387791	113400418	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	ANKLE1	19	17281645	17287646	FALSE	1155	-0.249305971018279	46	17273895	17821522	0.298322295679939	3	NA	0.298322295679939	3	NA	547627	NA	25	13	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ANKLE2	12	132725503	132761888	FALSE	818	-0.324030199616913	43	132687628	133234369	0.192136715055622	3	NA	0.192136715055622	3	NA	546741	NA	14	16	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	ANKMY1	2	240479422	240569209	FALSE	194	-0.588828356865968	23	240025214	241817025	0.186356639256811	1	0	0.186356639256811	1	0	1791811	1	34	25	0	FALSE	HETLOSS	PASS
659_bTo_pair	ANKMY2	7	16599776	16645817	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	11	1	FALSE	GAIN	PASS
659_bTo_pair	ANKRA2	5	73552335	73565686	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	ANKRD1	10	90912096	90921276	FALSE	662	-0.410954559094016	36	89715119	94762760	0.365165917639896	2	0	0.365165917639896	2	0	5047641	2	33	10	1	FALSE	CNLOH	PASS
659_bTo_pair	ANKRD10	13	110878540	110915069	FALSE	844	-0.576217954819194	24	110150427	113263496	0.359751661895656	2	0	0.359751661895656	2	0	3113069	2	19	10	0	FALSE	CNLOH	PASS
659_bTo_pair	ANKRD11	16	89267619	89490561	TRUE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	81	12	TRUE	HETLOSS	PASS
659_bTo_pair	ANKRD12	18	9136228	9285985	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	30	0	FALSE	GAIN	PASS
659_bTo_pair	ANKRD13A	12	109999186	110039763	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	ANKRD13B	17	29589769	29614761	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	ANKRD13C	1	70260588	70354734	FALSE	23	-0.326404897444941	43	65224778	71080923	0.192136715055622	3	NA	0.192136715055622	3	NA	5856145	NA	29	14	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ANKRD13D	11	67288547	67302485	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	15	1	FALSE	GAIN	PASS
659_bTo_pair	ANKRD16	10	5861617	5889906	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	8	1	FALSE	CNLOH	PASS
659_bTo_pair	ANKRD17	4	73073376	73258798	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	46	0	FALSE	DIPLOID	PASS
659_bTo_pair	ANKRD18A	9	38571358	38620660	FALSE	595	-0.209027397852981	47	37442028	67884575	0.365165917639896	3	1	0.365165917639896	3	1	30442547	2	35	21	2	FALSE	GAIN	PASS
659_bTo_pair	ANKRD18B	9	33524394	33573009	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	22	3	FALSE	CNLOH	PASS
659_bTo_pair	ANKRD2	10	97572499	97583884	FALSE	664	-0.371799025630062	36	96955124	97864220	0.365165917639896	2	0	0.365165917639896	2	0	909096	2	23	10	0	FALSE	CNLOH	PASS
659_bTo_pair	ANKRD20A1	9	67859147	67902094	FALSE	595	-0.209027397852981	47	37442028	67884575	0.365165917639896	3	1	0.365165917639896	3	1	30442547	2	35	12	5	TRUE	GAIN	PASS
659_bTo_pair	ANKRD20A2	9	40223285	40266392	FALSE	595	-0.209027397852981	47	37442028	67884575	0.365165917639896	3	1	0.365165917639896	3	1	30442547	2	35	6	1	FALSE	GAIN	PASS
659_bTo_pair	ANKRD20A3	9	66106815	66153135	FALSE	595	-0.209027397852981	47	37442028	67884575	0.365165917639896	3	1	0.365165917639896	3	1	30442547	2	35	3	1	FALSE	GAIN	PASS
659_bTo_pair	ANKRD20A4	9	64369394	64413142	FALSE	595	-0.209027397852981	47	37442028	67884575	0.365165917639896	3	1	0.365165917639896	3	1	30442547	2	35	12	7	FALSE	GAIN	PASS
659_bTo_pair	ANKRD22	10	88822132	88851818	FALSE	658	-0.534531933000134	29	88275028	88948930	NA	2	NA	NA	2	NA	673902	NA	9	6	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ANKRD23	2	96824526	96857934	FALSE	128	-0.534748403488722	29	96267335	97158701	NA	2	NA	NA	2	NA	891366	NA	17	19	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ANKRD24	19	4183354	4224814	FALSE	1124	-0.62008955817668	23	4168484	5151543	0.186356639256811	1	0	0.186356639256811	1	0	983059	1	28	27	4	FALSE	HETLOSS	PASS
659_bTo_pair	ANKRD26	10	26991914	27100498	FALSE	637	1.05065715784774	81	27004470	27100385	0.364342740527346	12	NA	0.364342740527346	12	NA	95915	NA	1	47	8	FALSE	AMP	PASS
659_bTo_pair	ANKRD27	19	32597007	32676597	FALSE	1165	-0.570153591761829	23	29923697	33225768	0.186356639256811	1	0	0.186356639256811	1	0	3302071	1	18	30	8	FALSE	HETLOSS	PASS
659_bTo_pair	ANKRD28	3	15667236	15859771	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	32	5	FALSE	HETLOSS	PASS
659_bTo_pair	ANKRD29	18	23598926	23662885	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	10	1	FALSE	GAIN	PASS
659_bTo_pair	ANKRD30A	10	37125788	37384111	FALSE	640	-0.421497241268382	32	32269100	43094667	0.365165917639896	2	0	0.365165917639896	2	0	10825567	2	20	36	1	FALSE	CNLOH	PASS
659_bTo_pair	ANKRD30B	18	14728272	14852738	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	41	0	FALSE	GAIN	PASS
659_bTo_pair	ANKRD30BL	2	132147591	132257969	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	ANKRD31	5	75068275	75236878	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	38	0	FALSE	HETLOSS	PASS
659_bTo_pair	ANKRD33	12	51887960	51891664	FALSE	772	-0.61197679162419	26	50109466	51920864	NA	2	NA	NA	2	NA	1811398	NA	27	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ANKRD33B	5	10564330	10657816	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	8	0	FALSE	GAIN	PASS
659_bTo_pair	ANKRD34A	1	145959442	145964582	FALSE	44	-0.0508975396039555	55	119911615	146019534	0.328696605851359	4	NA	0.328696605851359	4	NA	26107919	NA	33	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ANKRD34B	5	80556755	80570488	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	ANKRD34C	15	79293285	79298235	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	ANKRD35	1	145866560	145885866	FALSE	44	-0.0508975396039555	55	119911615	146019534	0.328696605851359	4	NA	0.328696605851359	4	NA	26107919	NA	33	20	4	FALSE	GAIN (many states)	PASS
659_bTo_pair	ANKRD36	2	97113496	97250199	FALSE	128	-0.534748403488722	29	96267335	97158701	NA	2	NA	NA	2	NA	891366	NA	17	72	20	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	ANKRD36B	2	97492663	97589965	FALSE	129	-0.0788460339292772	54	97162194	97739861	0.311828977193897	4	2	0.311828977193897	4	2	577667	2	6	40	6	FALSE	TETRAPLOID	PASS
659_bTo_pair	ANKRD36C	2	95836919	95991831	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	77	17	TRUE	DIPLOID	PASS
659_bTo_pair	ANKRD37	4	185396021	185400628	FALSE	305	-0.853036814117495	12	184629284	186555336	0.365165917639896	1	0	0.365165917639896	1	0	1926052	1	22	6	2	FALSE	HETLOSS	PASS
659_bTo_pair	ANKRD39	2	96836611	96858095	FALSE	128	-0.534748403488722	29	96267335	97158701	NA	2	NA	NA	2	NA	891366	NA	17	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ANKRD40	17	50693190	50707924	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ANKRD40CL	17	50761029	50767557	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ANKRD42	11	83193739	83260694	FALSE	712	-0.188800010767045	48	77590086	86068715	0.365165917639896	3	NA	0.365165917639896	3	NA	8478629	NA	30	15	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ANKRD44	2	196967017	197311173	FALSE	161	-0.46057869782823	30	190057617	197310624	1	2	1	1	2	1	7253007	1	23	29	1	FALSE	DIPLOID	PASS
659_bTo_pair	ANKRD45	1	173609561	173669862	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	ANKRD46	8	100509752	100559784	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	5	0	FALSE	GAIN	PASS
659_bTo_pair	ANKRD49	11	94493629	94499583	FALSE	716	1.00540461717022	80	94415686	94498892	0.364342740527346	12	NA	0.364342740527346	12	NA	83206	NA	2	6	0	FALSE	AMP	PASS
659_bTo_pair	ANKRD50	4	124664052	124712732	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	18	2	FALSE	DIPLOID	PASS
659_bTo_pair	ANKRD52	12	56237807	56258391	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	30	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ANKRD53	2	70978380	70985499	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	11	2	FALSE	DIPLOID	PASS
659_bTo_pair	ANKRD54	22	37830855	37849327	FALSE	1263	-0.528184158498335	29	36991204	37967644	NA	2	NA	NA	2	NA	976440	NA	31	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ANKRD55	5	56099678	56233359	FALSE	319	-0.764156631411702	19	50399919	56556187	0.365165917639896	1	0	0.365165917639896	1	0	6156268	1	28	13	1	FALSE	HETLOSS	PASS
659_bTo_pair	ANKRD6	6	89433170	89633834	FALSE	409	-0.443147941484883	34	89098919	90586786	NA	2	NA	NA	2	NA	1487867	NA	13	18	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ANKRD60	20	58218495	58228653	FALSE	1221	-0.44936578355072	34	56249153	58715213	NA	2	NA	NA	2	NA	2466060	NA	27	6	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ANKRD61	7	6031376	6036386	FALSE	456	-0.240618790532325	45	6028682	12688782	0.279823559258657	3	0	0.279823559258657	3	0	6660100	3	32	6	2	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	ANKRD62	18	12093853	12129749	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	17	0	FALSE	GAIN	PASS
659_bTo_pair	ANKRD63	15	40281444	40282586	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	ANKRD65	1	1418420	1421769	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	6	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ANKRD66	6	46746917	46759506	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	ANKRD7	7	118214669	118496171	FALSE	490	-0.576498321273708	26	116888215	124790543	NA	2	NA	NA	2	NA	7902328	NA	33	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ANKRD9	14	102501760	102509799	FALSE	878	-0.78309571727566	16	102193484	102726534	0.365165917639896	1	0	0.365165917639896	1	0	533050	1	7	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	ANKS1A	6	34889265	35091413	FALSE	391	-0.499783837646083	34	33391964	35241176	NA	2	NA	NA	2	NA	1849212	NA	26	28	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ANKS1B	12	98726457	99984654	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	38	2	FALSE	DIPLOID	PASS
659_bTo_pair	ANKS3	16	4696510	4734378	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	18	3	FALSE	DIPLOID	PASS
659_bTo_pair	ANKS4B	16	21233665	21253845	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	ANKS6	9	98731329	98796965	FALSE	608	-0.541405085979946	27	95522076	99069752	1	2	1	1	2	1	3547676	1	31	21	2	FALSE	DIPLOID	PASS
659_bTo_pair	ANKUB1	3	149761100	149968385	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	21	2	FALSE	GAIN	PASS
659_bTo_pair	ANKZF1	2	219229757	219236669	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	ANLN	7	36389806	36453791	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	27	2	FALSE	GAIN	PASS
659_bTo_pair	ANO1	11	70078302	70189528	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	29	1	FALSE	GAIN	PASS
659_bTo_pair	ANO10	3	43354859	43691594	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	ANO2	12	5531869	5946232	FALSE	741	-0.251609480735115	44	4489790	6567957	0.345317016959666	3	1	0.345317016959666	3	1	2078167	2	28	31	1	FALSE	GAIN	PASS
659_bTo_pair	ANO3	11	26309599	26663288	FALSE	689	-0.596895402665017	26	22674905	26692543	NA	2	NA	NA	2	NA	4017638	NA	7	34	5	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ANO4	12	100717526	101128641	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	26	2	FALSE	DIPLOID	PASS
659_bTo_pair	ANO5	11	21799934	22283357	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	25	1	FALSE	DIPLOID	PASS
659_bTo_pair	ANO6	12	45215987	45440404	FALSE	764	-0.478463991093384	34	40959192	45805435	NA	2	NA	NA	2	NA	4846243	NA	16	26	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ANO7	2	241188509	241225377	FALSE	194	-0.588828356865968	23	240025214	241817025	0.186356639256811	1	0	0.186356639256811	1	0	1791811	1	34	25	0	FALSE	HETLOSS	PASS
659_bTo_pair	ANO8	19	17323223	17334829	FALSE	1155	-0.249305971018279	46	17273895	17821522	0.298322295679939	3	NA	0.298322295679939	3	NA	547627	NA	25	22	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ANO9	11	417933	442011	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	21	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ANOS1	23	8528874	8732186	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	15	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	ANP32A	15	68778535	68820897	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	ANP32B	9	97983361	98015943	FALSE	608	-0.541405085979946	27	95522076	99069752	1	2	1	1	2	1	3547676	1	31	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ANP32D	12	48472665	48473624	FALSE	768	-0.491963868457131	34	48045387	49018767	NA	2	NA	NA	2	NA	973380	NA	28	2	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ANP32E	1	150218417	150236156	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ANPEP	15	89784889	89815401	FALSE	925	-0.863518905667221	13	89317527	90079704	0.365165917639896	1	0	0.365165917639896	1	0	762177	1	14	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	ANTXR1	2	69013178	69249327	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	21	1	FALSE	DIPLOID	PASS
659_bTo_pair	ANTXR2	4	79901149	80125454	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	ANTXRL	10	46286345	46330207	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	19	1	FALSE	CNLOH	PASS
659_bTo_pair	ANXA1	9	73151757	73170393	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	ANXA10	4	168092515	168187690	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	12	2	FALSE	HETLOSS	PASS
659_bTo_pair	ANXA11	10	80150889	80205572	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	15	0	FALSE	CNLOH	PASS
659_bTo_pair	ANXA13	8	123680794	123737407	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	12	1	FALSE	GAIN	PASS
659_bTo_pair	ANXA2	15	60347134	60402883	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	13	1	FALSE	HETLOSS	PASS
659_bTo_pair	ANXA2R	5	43039081	43043170	FALSE	316	-0.143574193475256	49	39021030	43704252	0.365165917639896	3	1	0.365165917639896	3	1	4683222	2	28	3	0	FALSE	GAIN	PASS
659_bTo_pair	ANXA3	4	78551519	78610451	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	ANXA4	2	69644425	69827100	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	ANXA5	4	121667955	121697113	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	ANXA6	5	151100712	151157882	FALSE	350	-0.819899512516675	16	150444373	153997804	0.365165917639896	1	0	0.365165917639896	1	0	3553431	1	25	25	0	FALSE	HETLOSS	PASS
659_bTo_pair	ANXA7	10	73375101	73414076	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	13	0	FALSE	CNLOH	PASS
659_bTo_pair	ANXA8L1	10	46375627	46391784	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	5	0	FALSE	CNLOH	PASS
659_bTo_pair	ANXA9	1	150982017	150995634	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	AOAH	7	36512949	36724549	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	23	1	FALSE	GAIN	PASS
659_bTo_pair	AOC1	7	150824627	150861504	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	AOC2	17	42844600	42850707	FALSE	1040	-0.646197503395479	26	42761348	43039396	NA	2	NA	NA	2	NA	278048	NA	18	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AOC3	17	42851184	42858130	FALSE	1040	-0.646197503395479	26	42761348	43039396	NA	2	NA	NA	2	NA	278048	NA	18	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AOX1	2	200585868	200677064	FALSE	164	-0.381871160033202	39	198084145	201228955	NA	2	NA	NA	2	NA	3144810	NA	19	35	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AP000275.2	21	32578822	32612281	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	10	2	FALSE	DIPLOID	PASS
659_bTo_pair	AP000295.1	21	33229901	33297160	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	18	1	FALSE	DIPLOID	PASS
659_bTo_pair	AP000311.1	21	33584687	33931607	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	64	2	FALSE	DIPLOID	PASS
659_bTo_pair	AP000350.4	22	23862188	23895223	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	14	0	FALSE	CNLOH	PASS
659_bTo_pair	AP000646.1	11	121024125	121113108	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	AP000721.1	11	63974620	63988346	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	AP000781.2	11	57387365	57424059	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	17	0	FALSE	GAIN	PASS
659_bTo_pair	AP000812.4	11	72105924	72109329	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	6	0	FALSE	GAIN	PASS
659_bTo_pair	AP000812.5	11	72080777	72110782	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	21	4	FALSE	GAIN	PASS
659_bTo_pair	AP000944.2	11	65261928	65326543	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	21	0	FALSE	GAIN	PASS
659_bTo_pair	AP001267.5	11	118401602	118482737	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	50	2	TRUE	HETLOSS	PASS
659_bTo_pair	AP001273.2	11	93741664	93812378	FALSE	715	-0.44311716102168	34	90214063	94410681	NA	2	NA	NA	2	NA	4196618	NA	16	22	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AP001458.2	11	62649694	62665178	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	AP001781.2	11	111786286	111879425	FALSE	723	-0.542672588801529	29	108383083	111912852	NA	2	NA	NA	2	NA	3529769	NA	24	25	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AP001931.1	11	57742163	57793243	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	11	1	FALSE	GAIN	PASS
659_bTo_pair	AP002373.1	11	114400682	114443932	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	AP002495.1	11	71865509	71928654	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	2	0	FALSE	GAIN	PASS
659_bTo_pair	AP002512.3	11	56459221	56473352	FALSE	697	0.105943470317224	59	56412769	56642206	0.308533751035793	5	NA	0.308533751035793	5	NA	229437	NA	9	8	0	FALSE	AMP (many states)	PASS
659_bTo_pair	AP002748.4	11	66509079	66533613	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	20	2	FALSE	GAIN	PASS
659_bTo_pair	AP002884.3	11	112086903	112193805	FALSE	725	1.72492693683901	97	112086942	112121950	0.364342740527346	21	NA	0.364342740527346	21	NA	35008	NA	2	28	0	TRUE	AMP	PASS
659_bTo_pair	AP002990.1	11	62559603	62591531	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	25	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	AP003108.2	11	61429220	61485822	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	24	0	FALSE	GAIN	PASS
659_bTo_pair	AP003419.1	11	67351572	67373584	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	9	1	FALSE	GAIN	PASS
659_bTo_pair	AP1AR	4	112231737	112270047	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	AP1B1	22	29327680	29423179	FALSE	1259	-0.52695279651924	29	29311622	29581007	NA	2	NA	NA	2	NA	269385	NA	7	25	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AP1G1	16	71729000	71809201	FALSE	983	-0.428709389755029	30	71178941	72171154	1	2	1	1	2	1	992213	1	22	23	3	FALSE	DIPLOID	PASS
659_bTo_pair	AP1G2	14	23559565	23568070	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	AP1M1	19	16197578	16245907	FALSE	1152	-0.702482358931041	22	15914366	16234459	0.291335969972972	1	0	0.291335969972972	1	0	320093	1	8	12	2	FALSE	HETLOSS	PASS
659_bTo_pair	AP1M2	19	10572671	10587315	FALSE	1141	-0.578703281933348	26	10514217	10929669	NA	2	NA	NA	2	NA	415452	NA	14	12	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AP1S1	7	101154400	101161596	FALSE	484	-0.570670723449775	26	101042591	102111653	NA	2	NA	NA	2	NA	1069062	NA	15	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AP1S2	23	15825806	15854931	FALSE	1276	0.0763243231691416	59	15827382	20064777	0.308533751035793	5	NA	0.308533751035793	5	NA	4237395	NA	24	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	AP1S3	2	223751686	223838027	FALSE	181	-0.697161202800517	22	222304006	224401731	0.291335969972972	1	0	0.291335969972972	1	0	2097725	1	12	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	AP2A1	19	49766968	49807113	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	23	0	FALSE	HETLOSS	PASS
659_bTo_pair	AP2A2	11	924894	1012245	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	25	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	AP2B1	17	35578046	35726409	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	21	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	AP2M1	3	184174689	184184091	FALSE	259	-0.260370931250901	44	183654025	185254015	0.345317016959666	3	1	0.345317016959666	3	1	1599990	2	31	14	0	FALSE	GAIN	PASS
659_bTo_pair	AP2S1	19	46838136	46850992	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	6	1	TRUE	HOMDEL	suppress_large_homdel
659_bTo_pair	AP3B1	5	78000525	78294755	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	27	3	FALSE	HETLOSS	PASS
659_bTo_pair	AP3B2	15	82659281	82709914	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	30	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	AP3D1	19	2100988	2164468	FALSE	1118	-0.58059819545476	23	1775405	2151345	0.186356639256811	1	0	0.186356639256811	1	0	375940	1	13	37	3	TRUE	HETLOSS	PASS
659_bTo_pair	AP3M1	10	74120255	74151063	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	8	0	FALSE	CNLOH	PASS
659_bTo_pair	AP3M2	8	42152946	42171673	FALSE	539	-1.05320152150344	8	42051901	42193184	0.342391532111247	0	0	0.342391532111247	0	0	141283	0	3	9	0	FALSE	HOMDEL	PASS
659_bTo_pair	AP3S1	5	115841481	115914081	FALSE	331	-0.706980197323045	20	112861366	122075379	0.365165917639896	1	0	0.365165917639896	1	0	9214013	1	31	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	AP3S2	15	89830599	89894638	FALSE	925	-0.863518905667221	13	89317527	90079704	0.365165917639896	1	0	0.365165917639896	1	0	762177	1	14	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	AP4B1	1	113894748	113905201	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	AP4E1	15	50908672	51005900	FALSE	906	-0.753975485974629	19	49508303	51105073	0.365165917639896	1	0	0.365165917639896	1	0	1596770	1	12	25	0	FALSE	HETLOSS	PASS
659_bTo_pair	AP4M1	7	100101549	100110345	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	AP4S1	14	31025106	31096450	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	AP5B1	11	65775893	65780802	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	11	2	FALSE	GAIN	PASS
659_bTo_pair	AP5M1	14	57268909	57298742	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	AP5S1	20	3820524	3828837	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	AP5Z1	7	4775615	4794395	FALSE	453	-0.32600279290147	42	3619174	5500988	0.189552622934988	3	0	0.189552622934988	3	0	1881814	3	12	18	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	APAF1	12	98645141	98735433	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	28	1	FALSE	DIPLOID	PASS
659_bTo_pair	APBA1	9	69427530	69672306	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	APBA2	15	28884483	29118315	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	APBA3	19	3750819	3761699	FALSE	1122	-0.653400653967241	21	3157829	4037863	0.140309795179477	0	0	0.140309795179477	0	0	880034	0	27	12	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	APBB1	11	6395124	6419414	FALSE	682	-0.308581000695747	43	6240079	6614875	0.192136715055622	3	NA	0.192136715055622	3	NA	374796	NA	15	16	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	APBB1IP	10	26438203	26567803	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	15	0	FALSE	CNLOH	PASS
659_bTo_pair	APBB2	4	40810027	41216714	FALSE	280	-0.191477557443324	47	38829296	41740154	0.365165917639896	3	1	0.365165917639896	3	1	2910858	2	22	18	0	FALSE	GAIN	PASS
659_bTo_pair	APBB3	5	140558268	140564781	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	14	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	APC	5	112707498	112846239	TRUE	330	1.05354209618678	81	112707270	112845879	0.364342740527346	12	NA	0.364342740527346	12	NA	138609	NA	2	72	12	FALSE	AMP	PASS
659_bTo_pair	APC2	19	1446302	1473244	FALSE	1116	-0.668595541323287	22	1229189	1605424	0.291335969972972	1	0	0.291335969972972	1	0	376235	1	21	33	0	FALSE	HETLOSS	PASS
659_bTo_pair	APCDD1	18	10454628	10489948	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	9	0	FALSE	GAIN	PASS
659_bTo_pair	APCDD1L	20	58459101	58515131	FALSE	1221	-0.44936578355072	34	56249153	58715213	NA	2	NA	NA	2	NA	2466060	NA	27	10	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	APCS	1	159587825	159588865	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	APEH	3	49674002	49683963	FALSE	218	-0.900819276070563	13	49413105	49683092	0.365165917639896	1	0	0.365165917639896	1	0	269987	1	7	23	0	TRUE	HETLOSS	PASS
659_bTo_pair	APELA	4	164877004	164898965	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	2	1	FALSE	HETLOSS	PASS
659_bTo_pair	APEX1	14	20455191	20457772	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	APEX2	23	55000357	55009057	FALSE	1303	0.0232492223836125	56	53426353	57488811	0.365165917639896	4	NA	0.365165917639896	4	NA	4062458	NA	32	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	APH1A	1	150265399	150269580	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	APH1B	15	63276018	63309126	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	API5	11	43311963	43344529	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	APIP	11	34853094	34916499	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	APLF	2	68467561	68655862	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	16	2	FALSE	DIPLOID	PASS
659_bTo_pair	APLN	23	129645259	129654937	FALSE	1333	-0.260466887002759	46	126819804	129920771	0.298322295679939	3	NA	0.298322295679939	3	NA	3100967	NA	9	2	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	APLNR	11	57233577	57237314	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	5	0	FALSE	GAIN	PASS
659_bTo_pair	APLP1	19	35867899	35879791	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	APLP2	11	130068147	130144811	FALSE	734	-0.516486951202814	27	128842412	134387591	1	2	1	1	2	1	5545179	1	27	19	1	FALSE	DIPLOID	PASS
659_bTo_pair	APMAP	20	24962925	24992979	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	APOA1	11	116835751	116837950	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	APOA2	1	161222292	161223631	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	APOA4	11	116820700	116823306	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	APOA5	11	116789367	116792420	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	APOB	2	21001429	21044073	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	70	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	APOBEC1	12	7649400	7665903	FALSE	745	-0.243574834353832	44	6965649	8175835	0.345317016959666	3	1	0.345317016959666	3	1	1210186	2	26	6	0	FALSE	GAIN	PASS
659_bTo_pair	APOBEC2	6	41053304	41064511	FALSE	397	-0.509151429367598	27	37213022	41687167	1	2	1	1	2	1	4474145	1	33	4	2	FALSE	DIPLOID	PASS
659_bTo_pair	APOBEC3A	22	38952741	38992778	FALSE	1265	-0.53141020507802	29	38041114	39152464	NA	2	NA	NA	2	NA	1111350	NA	31	16	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	APOBEC3B	22	38982347	38992804	FALSE	1265	-0.53141020507802	29	38041114	39152464	NA	2	NA	NA	2	NA	1111350	NA	31	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	APOBEC3C	22	39014083	39020352	FALSE	1265	-0.53141020507802	29	38041114	39152464	NA	2	NA	NA	2	NA	1111350	NA	31	5	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	APOBEC3D	22	39021113	39033276	FALSE	1265	-0.53141020507802	29	38041114	39152464	NA	2	NA	NA	2	NA	1111350	NA	31	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	APOBEC3F	22	39040604	39053910	FALSE	1265	-0.53141020507802	29	38041114	39152464	NA	2	NA	NA	2	NA	1111350	NA	31	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	APOBEC3G	22	39077005	39087743	FALSE	1265	-0.53141020507802	29	38041114	39152464	NA	2	NA	NA	2	NA	1111350	NA	31	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	APOBEC3H	22	39097224	39104067	FALSE	1265	-0.53141020507802	29	38041114	39152464	NA	2	NA	NA	2	NA	1111350	NA	31	6	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	APOBEC4	1	183646404	183653316	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	APOBR	16	28494649	28498970	FALSE	962	-0.522336070959039	29	27403203	28925074	NA	2	NA	NA	2	NA	1521871	NA	25	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	APOC1	19	44914247	44919349	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	APOC2	19	44945982	44949565	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	APOC3	11	116829706	116833072	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	APOC4	19	44942238	44945496	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	3	1	FALSE	HETLOSS	PASS
659_bTo_pair	APOC4-APOC2	19	44942238	44949565	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	APOD	3	195568702	195584205	FALSE	269	-0.263219948753545	44	189957970	195888442	0.345317016959666	3	1	0.345317016959666	3	1	5930472	2	31	4	0	FALSE	GAIN	PASS
659_bTo_pair	APOE	19	44905754	44909393	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	6	2	FALSE	HETLOSS	PASS
659_bTo_pair	APOF	12	56360569	56362823	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	APOH	17	66212033	66256525	FALSE	1070	-0.476939588153593	30	65635933	68457397	1	2	1	1	2	1	2821464	1	18	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	APOL1	22	36253010	36267530	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	9	0	FALSE	CNLOH	PASS
659_bTo_pair	APOL2	22	36226203	36239954	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	6	0	FALSE	CNLOH	PASS
659_bTo_pair	APOL3	22	36140330	36166177	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	7	0	FALSE	CNLOH	PASS
659_bTo_pair	APOL4	22	36189124	36204840	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	8	0	FALSE	CNLOH	PASS
659_bTo_pair	APOL5	22	35717872	35729483	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	7	0	FALSE	CNLOH	PASS
659_bTo_pair	APOL6	22	35648395	35668409	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	5	0	FALSE	CNLOH	PASS
659_bTo_pair	APOLD1	12	12725917	12829975	FALSE	753	-0.517160615058114	27	12726042	18242949	1	2	1	1	2	1	5516907	1	31	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	APOM	6	31652416	31658210	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	APOO	23	23833353	23907934	FALSE	1278	-0.021616497728569	55	20155391	23935235	0.328696605851359	4	NA	0.328696605851359	4	NA	3779844	NA	16	8	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	APOOL	23	85003826	85093316	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	10	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	APOPT1	14	103562962	103607523	FALSE	881	-0.341614784223633	43	103502897	103687181	0.192136715055622	3	NA	0.192136715055622	3	NA	184284	NA	7	7	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	APP	21	25880550	26171128	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	APPBP2	17	60443149	60526219	FALSE	1060	-0.47151484718074	34	59953129	60500406	NA	2	NA	NA	2	NA	547277	NA	7	14	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	APPL1	3	57227726	57278105	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	24	0	FALSE	HETLOSS	PASS
659_bTo_pair	APPL2	12	105173296	105236238	FALSE	798	-0.492720037723834	34	102839233	105367537	NA	2	NA	NA	2	NA	2528304	NA	20	20	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	APRT	16	88809339	88811944	FALSE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	APTX	9	32972606	33025168	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	9	0	FALSE	CNLOH	PASS
659_bTo_pair	AQP1	7	30911694	30925516	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	7	0	FALSE	GAIN	PASS
659_bTo_pair	AQP10	1	154321090	154325325	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	AQP11	11	77589391	77610355	FALSE	712	-0.188800010767045	48	77590086	86068715	0.365165917639896	3	NA	0.365165917639896	3	NA	8478629	NA	30	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	AQP12A	2	240691845	240698483	FALSE	194	-0.588828356865968	23	240025214	241817025	0.186356639256811	1	0	0.186356639256811	1	0	1791811	1	34	4	2	FALSE	HETLOSS	PASS
659_bTo_pair	AQP12B	2	240676418	240682906	FALSE	194	-0.588828356865968	23	240025214	241817025	0.186356639256811	1	0	0.186356639256811	1	0	1791811	1	34	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	AQP2	12	49950741	49958881	FALSE	770	-0.500134310902258	34	49065087	50081631	NA	2	NA	NA	2	NA	1016544	NA	25	6	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AQP3	9	33441154	33447633	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	7	1	FALSE	CNLOH	PASS
659_bTo_pair	AQP4	18	26852038	26865818	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	7	1	FALSE	GAIN	PASS
659_bTo_pair	AQP5	12	49961870	49965681	FALSE	770	-0.500134310902258	34	49065087	50081631	NA	2	NA	NA	2	NA	1016544	NA	25	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AQP6	12	49967194	49977139	FALSE	770	-0.500134310902258	34	49065087	50081631	NA	2	NA	NA	2	NA	1016544	NA	25	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AQP7	9	33383179	33402682	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	9	0	FALSE	CNLOH	PASS
659_bTo_pair	AQP8	16	25215731	25228940	FALSE	960	-0.449512584299377	34	23658521	27234165	NA	2	NA	NA	2	NA	3575644	NA	16	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AQP9	15	58138169	58185911	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	AQR	15	34851782	34969839	FALSE	890	-0.864832779596883	13	34359248	37966686	0.365165917639896	1	0	0.365165917639896	1	0	3607438	1	12	36	0	FALSE	HETLOSS	PASS
659_bTo_pair	AR	23	67544032	67730619	FALSE	1308	2.59046758200089	115	67437996	67703126	0.364342740527346	42	NA	0.364342740527346	42	NA	265130	NA	1	179	1	TRUE	AMP	PASS
659_bTo_pair	ARAF	23	47561100	47571920	FALSE	1295	1.60267874947713	93	47556283	47574016	0.364342740527346	19	NA	0.364342740527346	19	NA	17733	NA	2	23	0	FALSE	AMP	PASS
659_bTo_pair	ARAP1	11	72685069	72793599	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	45	3	FALSE	GAIN	PASS
659_bTo_pair	ARAP2	4	35948221	36244509	FALSE	278	-0.217595572850614	44	20704713	38137253	0.345317016959666	3	1	0.345317016959666	3	1	17432540	2	29	37	1	FALSE	GAIN	PASS
659_bTo_pair	ARAP3	5	141653401	141682221	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	35	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ARC	8	142611044	142614472	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	ARCN1	11	118572390	118603033	FALSE	728	-0.487905654975058	30	118527582	119195409	1	2	1	1	2	1	667827	1	26	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	AREG	4	74445134	74455009	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	AREL1	14	74653437	74713115	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	ARF1	1	228082660	228099212	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARF3	12	48935723	48957551	FALSE	768	-0.491963868457131	34	48045387	49018767	NA	2	NA	NA	2	NA	973380	NA	28	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ARF4	3	57571363	57598220	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARF5	7	127588345	127591705	FALSE	492	-0.463656181520944	30	126439208	129166764	1	2	1	1	2	1	2727556	1	27	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	ARF6	14	49893092	49897054	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	ARFGAP1	20	63272785	63289793	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	ARFGAP2	11	47164299	47177125	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	ARFGAP3	22	42796502	42858106	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	16	0	FALSE	CNLOH	PASS
659_bTo_pair	ARFGEF1	8	67173511	67343677	FALSE	550	-0.186881774239562	48	60208949	67746087	0.365165917639896	3	NA	0.365165917639896	3	NA	7537138	NA	33	48	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ARFGEF2	20	48921890	49036693	FALSE	1216	-0.465272765977354	30	47658376	50278257	1	2	1	1	2	1	2619881	1	18	39	4	FALSE	DIPLOID	PASS
659_bTo_pair	ARFGEF3	6	138161921	138344663	FALSE	429	-0.412609995390511	39	138092232	142443520	NA	2	NA	NA	2	NA	4351288	NA	18	47	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ARFIP1	4	152779937	152918463	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARFIP2	11	6474683	6481479	FALSE	682	-0.308581000695747	43	6240079	6614875	0.192136715055622	3	NA	0.192136715055622	3	NA	374796	NA	15	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ARFRP1	20	63698642	63708025	FALSE	1224	1.85155133976983	100	63698473	63709121	0.364342740527346	24	NA	0.364342740527346	24	NA	10648	NA	5	16	1	FALSE	AMP	PASS
659_bTo_pair	ARG1	6	131573144	131584332	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ARG2	14	67619798	67651720	FALSE	862	-0.496151350288089	31	65561584	67816009	1	2	1	1	2	1	2254425	1	17	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ARGFX	3	121570704	121586634	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	5	0	FALSE	GAIN	PASS
659_bTo_pair	ARGLU1	13	106541673	106568164	FALSE	842	-0.555564796404534	26	103046205	109206791	NA	2	NA	NA	2	NA	6160586	NA	9	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ARHGAP1	11	46677080	46700615	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	ARHGAP10	4	147732063	148072780	FALSE	300	-0.423460920061428	34	143186078	151174790	NA	2	NA	NA	2	NA	7988712	NA	32	23	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ARHGAP11A	15	32615144	32639949	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARHGAP11B	15	30624494	30638805	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARHGAP12	10	31805404	31928876	FALSE	638	-0.441875687518437	32	27112127	31908266	0.365165917639896	2	0	0.365165917639896	2	0	4796139	2	18	21	3	TRUE	CNLOH	PASS
659_bTo_pair	ARHGAP15	2	143091362	143768352	FALSE	147	-0.57792076882865	26	142885531	144208666	NA	2	NA	NA	2	NA	1323135	NA	3	13	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ARHGAP17	16	24919385	25015666	FALSE	960	-0.449512584299377	34	23658521	27234165	NA	2	NA	NA	2	NA	3575644	NA	16	23	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ARHGAP18	6	129576132	129710225	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	ARHGAP19	10	97222173	97292673	FALSE	664	-0.371799025630062	36	96955124	97864220	0.365165917639896	2	0	0.365165917639896	2	0	909096	2	23	14	1	FALSE	CNLOH	PASS
659_bTo_pair	ARHGAP19-SLIT1	10	97153045	97292637	FALSE	664	-0.371799025630062	36	96955124	97864220	0.365165917639896	2	0	0.365165917639896	2	0	909096	2	23	19	1	FALSE	CNLOH	PASS
659_bTo_pair	ARHGAP20	11	110577042	110713189	FALSE	723	-0.542672588801529	29	108383083	111912852	NA	2	NA	NA	2	NA	3529769	NA	24	24	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ARHGAP21	10	24583609	24723668	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	39	0	FALSE	CNLOH	PASS
659_bTo_pair	ARHGAP22	10	48446034	48656265	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	18	2	FALSE	CNLOH	PASS
659_bTo_pair	ARHGAP23	17	38419280	38512392	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	32	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ARHGAP24	4	85475114	86002670	FALSE	291	-0.458701040497953	34	83536708	87613131	NA	2	NA	NA	2	NA	4076423	NA	17	16	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ARHGAP25	2	68679601	68826833	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	ARHGAP26	5	142770377	143229011	FALSE	341	1.90992561940975	101	142592446	142770811	0.364342740527346	25	NA	0.364342740527346	25	NA	178365	NA	2	25	2	TRUE	AMP	PASS
659_bTo_pair	ARHGAP27	17	45393902	45434421	FALSE	1045	1.60812106202441	93	45263124	45395646	0.364342740527346	19	NA	0.364342740527346	19	NA	132522	NA	2	20	0	TRUE	AMP	PASS
659_bTo_pair	ARHGAP28	18	6729718	6915716	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	17	0	FALSE	GAIN	PASS
659_bTo_pair	ARHGAP29	1	94148988	94275068	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	28	0	FALSE	DIPLOID	PASS
659_bTo_pair	ARHGAP30	1	161046946	161069970	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	ARHGAP31	3	119294373	119420714	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	23	0	FALSE	GAIN	PASS
659_bTo_pair	ARHGAP32	11	128965060	129279324	FALSE	734	-0.516486951202814	27	128842412	134387591	1	2	1	1	2	1	5545179	1	27	36	1	FALSE	DIPLOID	PASS
659_bTo_pair	ARHGAP33	19	35774532	35788822	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	26	4	FALSE	HETLOSS	PASS
659_bTo_pair	ARHGAP35	19	46918676	47005077	TRUE	1186	2.09064206047	105	46850770	47005017	0.364342740527346	29	NA	0.364342740527346	29	NA	154247	NA	2	37	2	FALSE	AMP	PASS
659_bTo_pair	ARHGAP36	23	131058242	131089883	FALSE	1335	0.100243493544559	59	130066940	134244999	0.308533751035793	5	NA	0.308533751035793	5	NA	4178059	NA	21	12	1	FALSE	AMP (many states)	PASS
659_bTo_pair	ARHGAP39	8	144529179	144605816	FALSE	569	-0.29739638799535	43	144518163	145054121	0.192136715055622	3	NA	0.192136715055622	3	NA	535958	NA	13	20	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ARHGAP4	23	153907367	153934999	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	32	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	ARHGAP40	20	38601934	38651035	FALSE	1205	-0.619744376635615	23	37518926	41023791	0.186356639256811	1	0	0.186356639256811	1	0	3504865	1	19	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARHGAP42	11	100687653	100993941	FALSE	717	-0.427991611956568	34	94512673	100992623	NA	2	NA	NA	2	NA	6479950	NA	19	26	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ARHGAP44	17	12789539	12991643	FALSE	1009	-0.493836167698037	33	12666172	16027364	0.344071079426502	2	0	0.344071079426502	2	0	3361192	2	21	23	2	FALSE	CNLOH	PASS
659_bTo_pair	ARHGAP45	19	1065923	1086628	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	28	5	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ARHGAP5	14	32076114	32159728	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	ARHGAP6	23	11137543	11665701	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	25	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	ARHGAP8	22	44752558	44862788	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	12	2	FALSE	CNLOH	PASS
659_bTo_pair	ARHGAP9	12	57472255	57488814	FALSE	782	-0.458497547164839	34	57472671	57623111	NA	2	NA	NA	2	NA	150440	NA	11	23	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ARHGDIA	17	81867721	81871406	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ARHGDIB	12	14942017	14961728	FALSE	753	-0.517160615058114	27	12726042	18242949	1	2	1	1	2	1	5516907	1	31	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	ARHGDIG	16	268727	283010	FALSE	934	-0.725703643263354	19	47610	287124	0.365165917639896	1	0	0.365165917639896	1	0	239514	1	16	21	2	FALSE	HETLOSS	PASS
659_bTo_pair	ARHGEF1	19	41883161	41930150	FALSE	1177	-0.671885212726332	22	41354916	42250573	0.291335969972972	1	0	0.291335969972972	1	0	895657	1	32	28	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARHGEF10	8	1823976	1958641	FALSE	510	-0.906181747703467	12	166288	7823395	0.365165917639896	1	0	0.365165917639896	1	0	7657107	1	48	32	5	FALSE	HETLOSS	PASS
659_bTo_pair	ARHGEF10L	1	17539835	17697874	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	34	0	FALSE	DIPLOID	PASS
659_bTo_pair	ARHGEF11	1	156934840	157045370	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	44	4	FALSE	DIPLOID	PASS
659_bTo_pair	ARHGEF12	11	120336914	120489936	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	44	2	FALSE	DIPLOID	PASS
659_bTo_pair	ARHGEF15	17	8310241	8322516	FALSE	1005	-0.533729334585785	29	8204923	8370291	NA	2	NA	NA	2	NA	165368	NA	9	17	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ARHGEF16	1	3454426	3481113	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	17	1	FALSE	DIPLOID	PASS
659_bTo_pair	ARHGEF17	11	73308289	73369388	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	37	1	FALSE	GAIN	PASS
659_bTo_pair	ARHGEF18	19	7395113	7472477	FALSE	1130	-0.690953718254595	21	7440128	7870576	0.140309795179477	0	0	0.140309795179477	0	0	430448	0	25	24	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ARHGEF19	1	16197854	16212609	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	17	5	FALSE	DIPLOID	PASS
659_bTo_pair	ARHGEF2	1	155946851	156007070	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	28	0	FALSE	DIPLOID	PASS
659_bTo_pair	ARHGEF25	12	57610180	57619379	FALSE	782	-0.458497547164839	34	57472671	57623111	NA	2	NA	NA	2	NA	150440	NA	11	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ARHGEF26	3	154121003	154257827	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	19	0	FALSE	GAIN	PASS
659_bTo_pair	ARHGEF28	5	73626158	73941993	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	43	5	FALSE	HETLOSS	PASS
659_bTo_pair	ARHGEF3	3	56727418	57079329	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	19	3	FALSE	HETLOSS	PASS
659_bTo_pair	ARHGEF33	2	38889841	38975449	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	22	2	TRUE	DIPLOID	PASS
659_bTo_pair	ARHGEF35	7	144186083	144195655	FALSE	504	-0.812834819860627	15	143573123	148800568	0.21938209893867	0	0	0.21938209893867	0	0	5227445	0	25	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ARHGEF37	5	149551947	149634968	FALSE	343	1.17111816741228	83	149493061	149609534	0.364342740527346	13	NA	0.364342740527346	13	NA	116473	NA	2	13	1	TRUE	AMP	PASS
659_bTo_pair	ARHGEF38	4	105552620	105708093	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	25	0	FALSE	DIPLOID	PASS
659_bTo_pair	ARHGEF39	9	35658875	35675866	FALSE	590	0.518634267342274	67	35107891	35683151	0.364342740527346	7	2	0.364342740527346	7	2	575260	5	11	18	5	FALSE	AMP	PASS
659_bTo_pair	ARHGEF4	2	130836916	131047263	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	ARHGEF40	14	21070270	21090240	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	32	0	FALSE	DIPLOID	PASS
659_bTo_pair	ARHGEF5	7	144355288	144380632	FALSE	504	-0.812834819860627	15	143573123	148800568	0.21938209893867	0	0	0.21938209893867	0	0	5227445	0	25	18	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ARHGEF6	23	136665547	136782088	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	22	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ARHGEF7	13	111114559	111305737	FALSE	844	-0.576217954819194	24	110150427	113263496	0.359751661895656	2	0	0.359751661895656	2	0	3113069	2	19	28	3	FALSE	CNLOH	PASS
659_bTo_pair	ARHGEF9	23	63634967	63809274	FALSE	1305	-0.186408694068352	48	57909690	63785131	0.365165917639896	3	NA	0.365165917639896	3	NA	5875441	NA	3	14	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ARID1A	1	26693236	26782110	TRUE	11	-0.0648968270692269	55	26460136	26787177	0.328696605851359	4	NA	0.328696605851359	4	NA	327041	NA	4	53	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ARID1B	6	156776020	157210779	TRUE	441	1.78067277605018	98	156776043	157215842	0.364342740527346	22	NA	0.364342740527346	22	NA	439799	NA	1	102	2	FALSE	AMP	PASS
659_bTo_pair	ARID2	12	45729665	45908040	TRUE	764	-0.478463991093384	34	40959192	45805435	NA	2	NA	NA	2	NA	4846243	NA	16	53	2	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	ARID3A	19	925781	975934	TRUE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	12	0	FALSE	HOMDEL	RESCUE
659_bTo_pair	ARID3B	15	74541177	74598131	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARID3C	9	34621379	34628107	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	9	0	FALSE	CNLOH	PASS
659_bTo_pair	ARID4A	14	58298385	58373887	TRUE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	29	2	FALSE	DIPLOID	PASS
659_bTo_pair	ARID4B	1	235131634	235328219	TRUE	81	-0.251586090510492	46	235112135	235194117	0.298322295679939	3	NA	0.298322295679939	3	NA	81982	NA	3	41	0	TRUE	GAIN (many states)	PASS
659_bTo_pair	ARID5A	2	96536743	96552638	FALSE	128	-0.534748403488722	29	96267335	97158701	NA	2	NA	NA	2	NA	891366	NA	17	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ARID5B	10	61901300	62096944	TRUE	645	0.769829137817954	74	61896761	62090933	0.364342740527346	9	NA	0.364342740527346	9	NA	194172	NA	1	49	2	TRUE	INDETERMINATE	PASS
659_bTo_pair	ARIH1	15	72474326	72602985	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARIH2	3	48918821	48986382	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARIH2OS	3	48917782	48919385	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARL1	12	101393120	101407820	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	ARL10	5	176365468	176401865	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	18	1	FALSE	HETLOSS	PASS
659_bTo_pair	ARL11	13	49628299	49633872	FALSE	835	-0.766581964775609	19	48490223	50953919	0.365165917639896	1	0	0.365165917639896	1	0	2463696	1	18	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARL13A	23	100969708	100990829	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	8	2	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	ARL13B	3	93980139	94055668	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	16	1	FALSE	GAIN	PASS
659_bTo_pair	ARL14	3	160677159	160678452	FALSE	250	-0.231905273142314	46	156829339	161250770	0.298322295679939	3	NA	0.298322295679939	3	NA	4421431	NA	26	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ARL14EP	11	30323051	30338227	FALSE	690	-0.499672577426227	34	26697185	32104345	NA	2	NA	NA	2	NA	5407160	NA	20	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ARL14EPL	5	116032324	116060118	FALSE	331	-0.706980197323045	20	112861366	122075379	0.365165917639896	1	0	0.365165917639896	1	0	9214013	1	31	3	1	FALSE	HETLOSS	PASS
659_bTo_pair	ARL15	5	53883945	54310582	FALSE	319	-0.764156631411702	19	50399919	56556187	0.365165917639896	1	0	0.365165917639896	1	0	6156268	1	28	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	ARL16	17	81681174	81683924	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	ARL17A	17	46516702	46579682	FALSE	1046	-0.746772159255206	19	45395806	47696360	0.365165917639896	1	0	0.365165917639896	1	0	2300554	1	26	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARL17B	17	46274784	46361797	FALSE	1046	-0.746772159255206	19	45395806	47696360	0.365165917639896	1	0	0.365165917639896	1	0	2300554	1	26	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARL2	11	65014113	65022184	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	5	0	FALSE	GAIN	PASS
659_bTo_pair	ARL2-SNX15	11	65014182	65040570	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	13	0	FALSE	GAIN	PASS
659_bTo_pair	ARL2BP	16	57245098	57253635	FALSE	971	-0.537344591536493	29	57069860	57923335	NA	2	NA	NA	2	NA	853475	NA	21	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ARL3	10	102673731	102714407	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	6	1	FALSE	CNLOH	PASS
659_bTo_pair	ARL4A	7	12686856	12690934	FALSE	456	-0.240618790532325	45	6028682	12688782	0.279823559258657	3	0	0.279823559258657	3	0	6660100	3	32	3	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	ARL4C	2	234493041	234497053	FALSE	189	-0.580904316133535	23	233779383	236380649	0.186356639256811	1	0	0.186356639256811	1	0	2601266	1	10	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARL4D	17	43398959	43401137	FALSE	1042	-0.917571943211592	13	43146172	43526465	0.365165917639896	1	0	0.365165917639896	1	0	380293	1	6	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARL5A	2	151788984	151828492	FALSE	149	-0.454179855872301	30	147845197	157628657	1	2	1	1	2	1	9783460	1	30	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	ARL5B	10	18659405	18681639	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	6	0	FALSE	CNLOH	PASS
659_bTo_pair	ARL5C	17	39156894	39167484	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	6	4	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ARL6	3	97764521	97801242	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	8	0	FALSE	GAIN	PASS
659_bTo_pair	ARL6IP1	16	18791667	18801678	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	ARL6IP4	12	122980060	122982913	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	ARL6IP5	3	69084944	69106066	FALSE	228	-0.860828429618822	13	64010871	69385924	0.365165917639896	1	0	0.365165917639896	1	0	5375053	1	16	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARL6IP6	2	152717893	152761253	FALSE	149	-0.454179855872301	30	147845197	157628657	1	2	1	1	2	1	9783460	1	30	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	ARL8A	1	202133404	202144743	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	ARL8B	3	5122220	5180912	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARL9	4	56505209	56525481	FALSE	285	-0.676685623676823	22	55346376	64409389	0.291335969972972	1	0	0.291335969972972	1	0	9063013	1	23	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARMC1	8	65602456	65634217	FALSE	550	-0.186881774239562	48	60208949	67746087	0.365165917639896	3	NA	0.365165917639896	3	NA	7537138	NA	33	6	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	ARMC10	7	103074881	103099764	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	ARMC12	6	35737032	35749079	FALSE	393	-0.47521086997284	30	35476361	36677919	1	2	1	1	2	1	1201558	1	21	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	ARMC2	6	108848416	108974472	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	ARMC3	10	22928024	23038523	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	20	1	FALSE	CNLOH	PASS
659_bTo_pair	ARMC4	10	27812164	27999048	FALSE	638	-0.441875687518437	32	27112127	31908266	0.365165917639896	2	0	0.365165917639896	2	0	4796139	2	18	20	1	FALSE	CNLOH	PASS
659_bTo_pair	ARMC5	16	31458080	31467166	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	17	1	FALSE	DIPLOID	PASS
659_bTo_pair	ARMC6	19	19033575	19060311	FALSE	1159	-0.165917001507678	49	18177228	19138502	0.365165917639896	3	1	0.365165917639896	3	1	961274	2	36	11	0	FALSE	GAIN	PASS
659_bTo_pair	ARMC7	17	75109952	75130265	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	ARMC8	3	138187248	138298389	FALSE	244	-0.465451876797886	34	136855703	138629155	NA	2	NA	NA	2	NA	1773452	NA	14	24	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ARMC9	2	231198546	231374837	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	24	3	FALSE	DIPLOID	PASS
659_bTo_pair	ARMCX1	23	101550531	101554700	FALSE	1321	0.439394403838451	66	101391440	103377786	0.364342740527346	7	NA	0.364342740527346	7	NA	1986346	NA	34	5	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	ARMCX2	23	101655281	101659891	FALSE	1321	0.439394403838451	66	101391440	103377786	0.364342740527346	7	NA	0.364342740527346	7	NA	1986346	NA	34	8	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	ARMCX3	23	101622797	101627843	FALSE	1321	0.439394403838451	66	101391440	103377786	0.364342740527346	7	NA	0.364342740527346	7	NA	1986346	NA	34	5	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	ARMCX4	23	101418287	101533459	FALSE	1321	0.439394403838451	66	101391440	103377786	0.364342740527346	7	NA	0.364342740527346	7	NA	1986346	NA	34	25	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	ARMCX5	23	102599168	102604159	FALSE	1321	0.439394403838451	66	101391440	103377786	0.364342740527346	7	NA	0.364342740527346	7	NA	1986346	NA	34	7	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	ARMCX6	23	101615118	101618001	FALSE	1321	0.439394403838451	66	101391440	103377786	0.364342740527346	7	NA	0.364342740527346	7	NA	1986346	NA	34	4	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	ARMH1	1	44674692	44725591	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	ARMH2	6	24797321	24798889	FALSE	373	-0.695027086668472	22	24174718	26017145	0.291335969972972	1	0	0.291335969972972	1	0	1842427	1	23	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARMH3	10	101845599	102056193	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	24	1	FALSE	CNLOH	PASS
659_bTo_pair	ARMH4	14	57999735	58298139	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	37	2	FALSE	DIPLOID	PASS
659_bTo_pair	ARMS2	10	122454653	122457352	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	3	1	FALSE	CNLOH	PASS
659_bTo_pair	ARMT1	6	151452258	151470101	FALSE	438	-0.675524335299184	22	151405234	151618046	0.291335969972972	1	0	0.291335969972972	1	0	212812	1	3	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	ARNT	1	150809705	150876768	FALSE	47	-0.642778549638746	26	150622836	150876589	NA	2	NA	NA	2	NA	253753	NA	6	22	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ARNT2	15	80404350	80597937	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	19	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ARNTL	11	13276652	13387266	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	18	1	FALSE	DIPLOID	PASS
659_bTo_pair	ARNTL2	12	27332854	27425289	FALSE	759	-0.427669886187443	30	25503824	31088026	1	2	1	1	2	1	5584202	1	28	18	2	FALSE	DIPLOID	PASS
659_bTo_pair	ARPC1A	7	99325910	99366262	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARPC1B	7	99374249	99394816	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARPC2	2	218217094	218254356	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARPC3	12	110434825	110450422	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ARPC4	3	9792495	9807726	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARPC4-TTLL3	3	9793082	9835401	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	23	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARPC5	1	183620846	183635757	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	ARPC5L	9	124862130	124877733	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARPIN	15	89895006	89912956	FALSE	925	-0.863518905667221	13	89317527	90079704	0.365165917639896	1	0	0.365165917639896	1	0	762177	1	14	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARPP19	15	52547045	52569883	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARPP21	3	35638945	35794496	FALSE	209	-0.637968449787088	26	31990360	37328493	NA	2	NA	NA	2	NA	5338133	NA	26	22	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ARR3	23	70268305	70281840	FALSE	1311	0.0481524733197309	56	68048478	70452009	0.365165917639896	4	NA	0.365165917639896	4	NA	2403531	NA	19	16	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ARRB1	11	75264182	75351705	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	16	1	FALSE	GAIN	PASS
659_bTo_pair	ARRB2	17	4710489	4721499	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARRDC1	9	137605654	137615360	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARRDC2	19	18001132	18014102	FALSE	1157	-0.332253297419471	43	17859980	18149705	0.192136715055622	3	NA	0.192136715055622	3	NA	289725	NA	7	10	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ARRDC3	5	91368724	91383359	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARRDC4	15	97960698	97973838	FALSE	931	-1.05463640239282	8	93072946	98485928	0.342391532111247	0	0	0.342391532111247	0	0	5412982	0	6	10	2	FALSE	HOMDEL	PASS
659_bTo_pair	ARRDC5	19	4890437	4902867	FALSE	1124	-0.62008955817668	23	4168484	5151543	0.186356639256811	1	0	0.186356639256811	1	0	983059	1	28	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARSA	22	50622754	50628173	FALSE	1272	-0.260847831900416	46	50286270	50731222	0.298322295679939	3	NA	0.298322295679939	3	NA	444952	NA	19	10	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ARSB	5	78777209	78986087	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARSD	23	2903970	2929351	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	13	1	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	ARSE	23	2934632	2968310	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	14	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	ARSF	23	3041471	3112726	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	12	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	ARSG	17	68259182	68422731	FALSE	1070	-0.476939588153593	30	65635933	68457397	1	2	1	1	2	1	2821464	1	18	21	2	FALSE	DIPLOID	PASS
659_bTo_pair	ARSH	23	3006613	3033571	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	12	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	ARSI	5	150296343	150339307	FALSE	348	-0.944402178600545	11	150166869	150399003	0.289956079954009	0	0	0.289956079954009	0	0	232134	0	5	8	0	FALSE	HOMDEL	PASS
659_bTo_pair	ARSJ	4	113900284	113979727	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ARSK	5	95555074	95605064	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	ART1	11	3645128	3664416	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	ART3	4	76011184	76112802	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	ART4	12	14825569	14843533	FALSE	753	-0.517160615058114	27	12726042	18242949	1	2	1	1	2	1	5516907	1	31	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	ART5	11	3638503	3642316	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	ARTN	1	43933320	43937241	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	ARV1	1	230978981	231000595	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	ARVCF	22	19969896	20016808	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	20	0	FALSE	CNLOH	PASS
659_bTo_pair	ARX	23	25003694	25016420	FALSE	1281	0.662601706370604	72	25004702	27981233	0.364342740527346	8	NA	0.364342740527346	8	NA	2976531	NA	9	9	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	AS3MT	10	102869516	102901899	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	11	0	FALSE	CNLOH	PASS
659_bTo_pair	ASAH1	8	18055992	18084998	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	ASAH2	10	50182778	50248610	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	9	0	FALSE	CNLOH	PASS
659_bTo_pair	ASAH2B	10	50739318	50816495	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	8	1	FALSE	CNLOH	PASS
659_bTo_pair	ASAP1	8	130052104	130443660	FALSE	565	-0.282741903777565	44	129748604	134610527	0.345317016959666	3	1	0.345317016959666	3	1	4861923	2	18	33	4	FALSE	GAIN	PASS
659_bTo_pair	ASAP2	2	9206765	9405683	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	29	5	FALSE	DIPLOID	PASS
659_bTo_pair	ASAP3	1	23428563	23484568	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	25	1	FALSE	DIPLOID	PASS
659_bTo_pair	ASB1	2	238426742	238452250	FALSE	190	-0.691419458816616	21	236392006	238848635	0.140309795179477	0	0	0.140309795179477	0	0	2456629	0	22	7	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ASB10	7	151175698	151187832	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	ASB11	23	15281697	15315656	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	8	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	ASB12	23	64224196	64230631	FALSE	1306	1.43771868016219	88	64182335	64225559	0.364342740527346	17	NA	0.364342740527346	17	NA	43224	NA	2	5	0	FALSE	AMP	PASS
659_bTo_pair	ASB13	10	5638867	5666595	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	8	0	FALSE	CNLOH	PASS
659_bTo_pair	ASB14	3	57268347	57292682	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	ASB15	7	123567010	123639481	FALSE	490	-0.576498321273708	26	116888215	124790543	NA	2	NA	NA	2	NA	7902328	NA	33	14	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ASB16	17	44170447	44179083	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ASB17	1	75918873	75932431	FALSE	25	-0.394411030612058	39	74026891	77942032	NA	2	NA	NA	2	NA	3915141	NA	22	6	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ASB18	2	236194872	236264409	FALSE	189	-0.580904316133535	23	233779383	236380649	0.186356639256811	1	0	0.186356639256811	1	0	2601266	1	10	9	2	FALSE	HETLOSS	PASS
659_bTo_pair	ASB2	14	93934153	93976791	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	ASB3	2	53532672	53787610	FALSE	110	-0.435434252584523	30	48441014	54599245	1	2	1	1	2	1	6158231	1	18	15	2	FALSE	DIPLOID	PASS
659_bTo_pair	ASB4	7	95478444	95540232	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ASB5	4	176213673	176277571	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	ASB6	9	129634604	129642169	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	10	2	FALSE	HETLOSS	PASS
659_bTo_pair	ASB7	15	100602534	100651705	FALSE	933	-0.918772702357227	12	98968746	101922991	0.365165917639896	1	0	0.365165917639896	1	0	2954245	1	21	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	ASB8	12	48147788	48181213	FALSE	768	-0.491963868457131	34	48045387	49018767	NA	2	NA	NA	2	NA	973380	NA	28	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ASB9	23	15235288	15270467	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	7	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	ASCC1	10	72096032	72217134	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	11	1	FALSE	CNLOH	PASS
659_bTo_pair	ASCC2	22	29788608	29838304	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	19	0	FALSE	CNLOH	PASS
659_bTo_pair	ASCC3	6	100508194	100881372	FALSE	411	-0.455063723695114	34	95586870	106069771	NA	2	NA	NA	2	NA	10482901	NA	27	47	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ASCL1	12	102957686	102960516	FALSE	798	-0.492720037723834	34	102839233	105367537	NA	2	NA	NA	2	NA	2528304	NA	20	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ASCL2	11	2268495	2270952	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	ASCL3	11	8937579	8938211	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	ASCL4	12	107774385	107776644	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	ASCL5	1	201113953	201127184	FALSE	60	-0.443336911293225	30	196228264	201209660	1	2	1	1	2	1	4981396	1	29	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	ASF1A	6	118894220	118909167	FALSE	421	-0.534093125771784	29	117482879	126348569	NA	2	NA	NA	2	NA	8865690	NA	29	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ASF1B	19	14119509	14136956	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ASGR1	17	7173431	7179564	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ASGR2	17	7101322	7115700	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	8	2	FALSE	HETLOSS	PASS
659_bTo_pair	ASH1L	1	155335268	155562807	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	48	0	FALSE	DIPLOID	PASS
659_bTo_pair	ASH2L	8	38105242	38144076	FALSE	532	-0.898955944857558	13	37845201	38269206	0.365165917639896	1	0	0.365165917639896	1	0	424005	1	12	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	ASIC1	12	50057548	50083611	FALSE	770	-0.500134310902258	34	49065087	50081631	NA	2	NA	NA	2	NA	1016544	NA	25	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ASIC2	17	33013087	34174964	FALSE	1022	-0.670211431189836	22	32030679	35026358	0.291335969972972	1	0	0.291335969972972	1	0	2995679	1	23	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	ASIC3	7	151048292	151052756	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	ASIC4	2	219514170	219538772	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	13	1	FALSE	HETLOSS	PASS
659_bTo_pair	ASIC5	4	155829729	155866273	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	ASIP	20	34194569	34269344	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	ASL	7	66075798	66093558	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	ASNA1	19	12737139	12748323	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ASNS	7	97852118	97872542	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	ASNSD1	2	189661385	189670831	FALSE	159	-0.50094907723407	34	185815441	189771912	NA	2	NA	NA	2	NA	3956471	NA	17	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ASPA	17	3472374	3503419	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	ASPDH	19	50511600	50514690	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ASPG	14	104085679	104115581	FALSE	883	-0.69016701050987	21	103712930	104759455	0.140309795179477	0	0	0.140309795179477	0	0	1046525	0	14	17	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ASPH	8	61500556	61714640	FALSE	550	-0.186881774239562	48	60208949	67746087	0.365165917639896	3	NA	0.365165917639896	3	NA	7537138	NA	33	33	3	FALSE	GAIN (many states)	PASS
659_bTo_pair	ASPHD1	16	29900375	29919864	FALSE	965	-0.735005669796309	19	28989573	29982749	0.365165917639896	1	0	0.365165917639896	1	0	993176	1	25	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	ASPHD2	22	26429273	26445015	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	7	0	FALSE	CNLOH	PASS
659_bTo_pair	ASPM	1	197084128	197146694	FALSE	60	-0.443336911293225	30	196228264	201209660	1	2	1	1	2	1	4981396	1	29	56	3	FALSE	DIPLOID	PASS
659_bTo_pair	ASPN	9	92456205	92482506	FALSE	606	-0.547644280946133	27	91214370	95094057	1	2	1	1	2	1	3879687	1	31	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	ASPRV1	2	69960089	69962265	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	ASPSCR1	17	81976807	82017406	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	ASRGL1	11	62337448	62393412	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	6	0	FALSE	GAIN	PASS
659_bTo_pair	ASS1	9	130444929	130501274	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	ASTE1	3	131013875	131027649	FALSE	242	-0.32037413513609	40	130560427	134790274	0.308149309490068	3	1	0.308149309490068	3	1	4229847	2	29	11	0	FALSE	GAIN	PASS
659_bTo_pair	ASTL	2	96123850	96138436	FALSE	126	-0.498143911483876	34	95935616	96208449	NA	2	NA	NA	2	NA	272833	NA	6	9	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ASTN1	1	176857302	177164973	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	30	4	FALSE	DIPLOID	PASS
659_bTo_pair	ASTN2	9	116425225	117415070	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	35	3	FALSE	DIPLOID	PASS
659_bTo_pair	ASXL1	20	32358330	32439319	TRUE	1202	0.844808231617173	76	32358370	32836730	0.364342740527346	10	NA	0.364342740527346	10	NA	478360	NA	7	46	0	FALSE	AMP	PASS
659_bTo_pair	ASXL2	2	25733753	25878516	TRUE	98	1.98962700120922	104	25737758	25744342	0.364342740527346	26	NA	0.364342740527346	26	NA	6584	NA	1	50	1	TRUE	AMP	PASS
659_bTo_pair	ASXL3	18	33578233	33751192	FALSE	1094	-1.18756130109789	6	32938019	33731953	0.365165917639896	0	0	0.365165917639896	0	0	793934	0	2	33	0	TRUE	HOMDEL	PASS
659_bTo_pair	ASZ1	7	117363222	117428123	FALSE	490	-0.576498321273708	26	116888215	124790543	NA	2	NA	NA	2	NA	7902328	NA	33	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ATAD1	10	87751512	87841343	FALSE	656	-0.313191165123093	43	86936767	87862427	0.192136715055622	3	NA	0.192136715055622	3	NA	925660	NA	12	10	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ATAD2	8	123319850	123416350	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	30	0	FALSE	GAIN	PASS
659_bTo_pair	ATAD2B	2	23748664	23927114	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	33	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ATAD3A	1	1512151	1534687	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	18	6	FALSE	DIPLOID	PASS
659_bTo_pair	ATAD3B	1	1471769	1497848	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	19	5	TRUE	HOMDEL	suppress_large_homdel
659_bTo_pair	ATAD3C	1	1449689	1470158	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	13	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ATAD5	17	30831970	30895869	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	33	1	FALSE	DIPLOID	PASS
659_bTo_pair	ATAT1	6	30626842	30646823	FALSE	379	-0.524744136561063	27	30546321	31270541	1	2	1	1	2	1	724220	1	30	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	ATCAY	19	3879864	3928079	FALSE	1122	-0.653400653967241	21	3157829	4037863	0.140309795179477	0	0	0.140309795179477	0	0	880034	0	27	13	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ATE1	10	121740421	121928801	FALSE	674	1.76393953219665	98	121473373	121790164	0.364342740527346	22	NA	0.364342740527346	22	NA	316791	NA	2	15	4	TRUE	AMP	PASS
659_bTo_pair	ATF1	12	50763710	50821122	FALSE	772	-0.61197679162419	26	50109466	51920864	NA	2	NA	NA	2	NA	1811398	NA	27	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ATF2	2	175072250	175168382	FALSE	153	-0.469039793655258	34	172736055	177217715	NA	2	NA	NA	2	NA	4481660	NA	28	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ATF3	1	212565334	212620777	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	ATF4	22	39519695	39522685	FALSE	1267	-0.448885551917151	34	39313004	41087696	NA	2	NA	NA	2	NA	1774692	NA	24	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ATF5	19	49928702	49933935	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	ATF6	1	161766294	161964070	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	16	2	FALSE	DIPLOID	PASS
659_bTo_pair	ATF6B	6	32115264	32128253	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	ATF7	12	53507856	53626410	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	ATF7IP	12	14365632	14502935	FALSE	753	-0.517160615058114	27	12726042	18242949	1	2	1	1	2	1	5516907	1	31	25	1	FALSE	DIPLOID	PASS
659_bTo_pair	ATF7IP2	16	10326434	10483638	FALSE	949	1.91304122891753	101	9748451	10431100	0.364342740527346	25	NA	0.364342740527346	25	NA	682649	NA	2	14	4	TRUE	AMP	PASS
659_bTo_pair	ATG10	5	81972025	82276857	FALSE	327	-0.729214269739125	19	80961009	86619409	0.365165917639896	1	0	0.365165917639896	1	0	5658400	1	14	8	2	FALSE	HETLOSS	PASS
659_bTo_pair	ATG101	12	52069246	52077494	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	ATG12	5	115828200	115841858	FALSE	331	-0.706980197323045	20	112861366	122075379	0.365165917639896	1	0	0.365165917639896	1	0	9214013	1	31	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	ATG13	11	46617527	46674818	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	17	1	FALSE	DIPLOID	PASS
659_bTo_pair	ATG14	14	55366392	55411858	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	ATG16L1	2	233210051	233295674	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	19	1	FALSE	DIPLOID	PASS
659_bTo_pair	ATG16L2	11	72814308	72843674	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	25	0	FALSE	GAIN	PASS
659_bTo_pair	ATG2A	11	64894546	64917248	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	45	2	FALSE	GAIN	PASS
659_bTo_pair	ATG2B	14	96279202	96363870	FALSE	876	-0.546199181806584	27	96039535	102050530	1	2	1	1	2	1	6010995	1	30	46	0	FALSE	DIPLOID	PASS
659_bTo_pair	ATG3	3	112532509	112562046	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	12	0	FALSE	GAIN	PASS
659_bTo_pair	ATG4A	23	108091668	108154671	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	13	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ATG4B	2	241637213	241673857	FALSE	194	-0.588828356865968	23	240025214	241817025	0.186356639256811	1	0	0.186356639256811	1	0	1791811	1	34	13	2	FALSE	HETLOSS	PASS
659_bTo_pair	ATG4C	1	62784135	62865513	FALSE	21	-0.414935064922519	39	59321678	64830856	NA	2	NA	NA	2	NA	5509178	NA	22	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ATG4D	19	10543895	10553418	FALSE	1141	-0.578703281933348	26	10514217	10929669	NA	2	NA	NA	2	NA	415452	NA	14	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ATG5	6	106045423	106325791	FALSE	411	-0.455063723695114	34	95586870	106069771	NA	2	NA	NA	2	NA	10482901	NA	27	40	2	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	ATG7	3	11272309	11557665	FALSE	199	-1.0441448018759	8	10200366	12187515	0.342391532111247	0	0	0.342391532111247	0	0	1987149	0	14	18	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ATG9A	2	219219380	219229717	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	ATG9B	7	151012209	151024499	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	22	1	FALSE	HETLOSS	PASS
659_bTo_pair	ATIC	2	215311817	215349773	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	ATL1	14	50532509	50633068	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	ATL2	2	38294880	38377285	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	ATL3	11	63624087	63671921	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	14	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ATM	11	108222484	108369102	TRUE	722	1.38748084451581	87	108223106	108368901	0.364342740527346	16	NA	0.364342740527346	16	NA	145795	NA	2	130	14	FALSE	AMP	PASS
659_bTo_pair	ATMIN	16	81035847	81047358	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	ATN1	12	6924463	6942321	FALSE	743	-0.145896859645485	51	6620180	6938488	0.365165917639896	3	NA	0.365165917639896	3	NA	318308	NA	20	18	1	TRUE	GAIN (many states)	PASS
659_bTo_pair	ATOH1	4	93828753	93830964	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	ATOH7	10	68230624	68232103	FALSE	649	-0.498971247588349	34	63133428	68527348	NA	2	NA	NA	2	NA	5393920	NA	15	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ATOH8	2	85751344	85788066	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ATOX1	5	151742316	151772532	FALSE	350	-0.819899512516675	16	150444373	153997804	0.365165917639896	1	0	0.365165917639896	1	0	3553431	1	25	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	ATP10A	15	25677273	25865172	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	29	1	FALSE	HETLOSS	PASS
659_bTo_pair	ATP10B	5	160563120	160852214	FALSE	353	-0.698571741790457	22	157138801	161546576	0.291335969972972	1	0	0.291335969972972	1	0	4407775	1	29	28	0	FALSE	HETLOSS	PASS
659_bTo_pair	ATP10D	4	47485288	47593486	FALSE	282	-0.204234033978701	47	41752697	49032685	0.365165917639896	3	1	0.365165917639896	3	1	7279988	2	31	30	0	FALSE	GAIN	PASS
659_bTo_pair	ATP11A	13	112690329	112887168	FALSE	844	-0.576217954819194	24	110150427	113263496	0.359751661895656	2	0	0.359751661895656	2	0	3113069	2	19	32	1	FALSE	CNLOH	PASS
659_bTo_pair	ATP11B	3	182793500	182921635	FALSE	254	3.31923036983022	121	181712144	182793802	0.364342740527346	72	NA	0.364342740527346	72	NA	1081658	NA	2	30	1	TRUE	AMP	PASS
659_bTo_pair	ATP11C	23	139726346	139945276	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	34	0	TRUE	GAIN (many states)	PASS
659_bTo_pair	ATP12A	13	24680411	24712493	FALSE	824	-0.820211361281197	14	23365275	27988570	0.365165917639896	1	0	0.365165917639896	1	0	4623295	1	32	25	0	FALSE	HETLOSS	PASS
659_bTo_pair	ATP13A1	19	19645198	19663693	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	27	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ATP13A2	1	16985958	17011928	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	33	0	FALSE	DIPLOID	PASS
659_bTo_pair	ATP13A3	3	194402672	194498364	FALSE	269	-0.263219948753545	44	189957970	195888442	0.345317016959666	3	1	0.345317016959666	3	1	5930472	2	31	31	1	FALSE	GAIN	PASS
659_bTo_pair	ATP13A4	3	193402077	193593111	FALSE	269	-0.263219948753545	44	189957970	195888442	0.345317016959666	3	1	0.345317016959666	3	1	5930472	2	31	30	0	FALSE	GAIN	PASS
659_bTo_pair	ATP13A5	3	193274790	193378843	FALSE	269	-0.263219948753545	44	189957970	195888442	0.345317016959666	3	1	0.345317016959666	3	1	5930472	2	31	30	4	FALSE	GAIN	PASS
659_bTo_pair	ATP1A1	1	116372668	116410261	FALSE	37	-0.781726809773331	16	114718157	116404480	0.365165917639896	1	0	0.365165917639896	1	0	1686323	1	12	26	0	FALSE	HETLOSS	PASS
659_bTo_pair	ATP1A2	1	160115759	160143591	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	27	1	FALSE	DIPLOID	PASS
659_bTo_pair	ATP1A3	19	41966582	41997497	FALSE	1177	-0.671885212726332	22	41354916	42250573	0.291335969972972	1	0	0.291335969972972	1	0	895657	1	32	25	1	FALSE	HETLOSS	PASS
659_bTo_pair	ATP1A4	1	160151570	160186977	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	25	0	FALSE	DIPLOID	PASS
659_bTo_pair	ATP1B1	1	169105697	169132722	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	ATP1B2	17	7646627	7657768	FALSE	1000	-0.750226164220686	19	7324407	7655594	0.365165917639896	1	0	0.365165917639896	1	0	331187	1	31	7	1	TRUE	HETLOSS	PASS
659_bTo_pair	ATP1B3	3	141876124	141926514	FALSE	246	-0.322519280750539	43	139344000	142447976	0.192136715055622	3	NA	0.192136715055622	3	NA	3103976	NA	19	7	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	ATP1B4	23	120362085	120383249	FALSE	1328	0.070674287613007	59	119603543	121049335	0.308533751035793	5	NA	0.308533751035793	5	NA	1445792	NA	34	9	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ATP23	12	57906039	57959148	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	ATP2A1	16	28878405	28904509	FALSE	962	-0.522336070959039	29	27403203	28925074	NA	2	NA	NA	2	NA	1521871	NA	25	27	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ATP2A2	12	110280756	110351093	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	23	0	FALSE	DIPLOID	PASS
659_bTo_pair	ATP2A3	17	3923870	3964464	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	25	3	FALSE	HETLOSS	PASS
659_bTo_pair	ATP2B1	12	89588049	89709300	FALSE	794	-0.258431968401282	46	85301316	91178343	0.298322295679939	3	NA	0.298322295679939	3	NA	5877027	NA	19	25	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ATP2B2	3	10324023	10708007	FALSE	199	-1.0441448018759	8	10200366	12187515	0.342391532111247	0	0	0.342391532111247	0	0	1987149	0	14	31	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ATP2B3	23	153517676	153582939	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	25	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	ATP2B4	1	203626561	203744081	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	26	2	FALSE	DIPLOID	PASS
659_bTo_pair	ATP2C1	3	130850595	131016712	FALSE	242	-0.32037413513609	40	130560427	134790274	0.308149309490068	3	1	0.308149309490068	3	1	4229847	2	29	32	0	FALSE	GAIN	PASS
659_bTo_pair	ATP2C2	16	84368527	84464187	FALSE	987	-0.578642888038652	23	81999201	85806436	0.186356639256811	1	0	0.186356639256811	1	0	3807235	1	31	30	6	FALSE	HETLOSS	PASS
659_bTo_pair	ATP4A	19	35550043	35563658	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	24	1	FALSE	HETLOSS	PASS
659_bTo_pair	ATP4B	13	113648804	113658186	FALSE	846	-0.38711803760524	39	113325636	114000814	NA	2	NA	NA	2	NA	675178	NA	11	7	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ATP5F1A	18	46080248	46104334	FALSE	1100	-0.758401070483502	19	45624783	47803983	0.365165917639896	1	0	0.365165917639896	1	0	2179200	1	22	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	ATP5F1B	12	56638175	56646068	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ATP5F1C	10	7788129	7807815	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	10	0	FALSE	CNLOH	PASS
659_bTo_pair	ATP5F1D	19	1241746	1244826	FALSE	1116	-0.668595541323287	22	1229189	1605424	0.291335969972972	1	0	0.291335969972972	1	0	376235	1	21	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	ATP5F1E	20	59025467	59032382	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	ATP5IF1	1	28236109	28246906	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	ATP5MC1	17	48892765	48895871	FALSE	1051	-0.636429062465303	26	48785033	49576193	NA	2	NA	NA	2	NA	791160	NA	15	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ATP5MC2	12	53632726	53677408	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	ATP5MC3	2	175176258	175184607	FALSE	153	-0.469039793655258	34	172736055	177217715	NA	2	NA	NA	2	NA	4481660	NA	28	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ATP5MD	10	103389041	103396492	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	2	0	FALSE	CNLOH	PASS
659_bTo_pair	ATP5ME	4	672436	674338	FALSE	272	-0.300029378244858	40	85877	1745020	0.308149309490068	3	1	0.308149309490068	3	1	1659143	2	29	4	0	FALSE	GAIN	PASS
659_bTo_pair	ATP5MF	7	99448475	99466331	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	ATP5MF-PTCD1	7	99419749	99466197	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	23	0	FALSE	HETLOSS	PASS
659_bTo_pair	ATP5MG	11	118401154	118431496	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	ATP5MGL	22	42639803	42640601	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	2	0	FALSE	CNLOH	PASS
659_bTo_pair	ATP5MPL	14	103912288	103928269	FALSE	883	-0.69016701050987	21	103712930	104759455	0.140309795179477	0	0	0.140309795179477	0	0	1046525	0	14	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ATP5PB	1	111448864	111462773	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ATP5PD	17	75038863	75046985	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	ATP5PF	21	25716503	25735673	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	ATP5PO	21	33903453	33915980	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	7	2	FALSE	DIPLOID	PASS
659_bTo_pair	ATP5S	14	50312326	50335558	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	ATP6AP1	23	154428632	154436516	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	11	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	ATP6AP1L	5	82279462	82386977	FALSE	327	-0.729214269739125	19	80961009	86619409	0.365165917639896	1	0	0.365165917639896	1	0	5658400	1	14	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	ATP6AP2	23	40579372	40606848	FALSE	1288	0.0977543403034234	59	40162702	41232378	0.308533751035793	5	NA	0.308533751035793	5	NA	1069676	NA	6	9	1	FALSE	AMP (many states)	PASS
659_bTo_pair	ATP6V0A1	17	42458844	42522611	FALSE	1038	-0.623371137159426	26	42404937	42698887	NA	2	NA	NA	2	NA	293950	NA	13	22	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ATP6V0A2	12	123712318	123761755	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	ATP6V0A4	7	138706294	138799560	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	21	2	FALSE	DIPLOID	PASS
659_bTo_pair	ATP6V0B	1	43974487	43978295	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ATP6V0C	16	2513870	2520218	FALSE	942	-0.803500535593988	16	2178660	2530995	0.365165917639896	1	0	0.365165917639896	1	0	352335	1	18	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	ATP6V0D1	16	67438014	67481237	FALSE	976	-0.467350965811123	34	67110264	67538977	NA	2	NA	NA	2	NA	428713	NA	24	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ATP6V0D2	8	85987323	86154228	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	15	0	FALSE	GAIN	PASS
659_bTo_pair	ATP6V0E1	5	172983757	173035445	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	ATP6V0E2	7	149872968	149891204	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	ATP6V1A	3	113747019	113812056	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	14	0	FALSE	GAIN	PASS
659_bTo_pair	ATP6V1B1	2	70935868	70965431	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	15	2	FALSE	DIPLOID	PASS
659_bTo_pair	ATP6V1B2	8	20197367	20226819	TRUE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	ATP6V1C1	8	103021063	103073051	FALSE	561	-0.210477706860293	47	102652438	116770243	0.365165917639896	3	1	0.365165917639896	3	1	14117805	2	32	12	1	FALSE	GAIN	PASS
659_bTo_pair	ATP6V1C2	2	10721100	10785110	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	ATP6V1D	14	67294371	67360265	FALSE	862	-0.496151350288089	31	65561584	67816009	1	2	1	1	2	1	2254425	1	17	20	3	FALSE	DIPLOID	PASS
659_bTo_pair	ATP6V1E1	22	17592136	17628818	FALSE	1240	-0.594689860601271	26	15528179	18606839	NA	2	NA	NA	2	NA	3078660	NA	21	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ATP6V1E2	2	46490750	46542557	FALSE	108	-0.751130758275331	19	46479657	47176488	0.365165917639896	1	0	0.365165917639896	1	0	696831	1	11	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	ATP6V1F	7	128862826	128865844	FALSE	492	-0.463656181520944	30	126439208	129166764	1	2	1	1	2	1	2727556	1	27	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	ATP6V1FNB	7	128866308	128872044	FALSE	492	-0.463656181520944	30	126439208	129166764	1	2	1	1	2	1	2727556	1	27	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	ATP6V1G1	9	114587746	114598373	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	ATP6V1G2	6	31544462	31548427	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	ATP6V1G2-DDX39B	6	31530219	31546608	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	ATP6V1G3	1	198523222	198540945	FALSE	60	-0.443336911293225	30	196228264	201209660	1	2	1	1	2	1	4981396	1	29	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	ATP6V1H	8	53715557	53843558	FALSE	543	-0.403572692824667	39	47962754	54147613	NA	2	NA	NA	2	NA	6184859	NA	18	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ATP7A	23	77910656	78050395	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	31	1	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	ATP7B	13	51930436	52012125	FALSE	836	-0.444239733377228	32	50956423	72747004	0.365165917639896	2	0	0.365165917639896	2	0	21790581	2	40	28	4	FALSE	CNLOH	PASS
659_bTo_pair	ATP8A1	4	42408373	42657105	FALSE	282	-0.204234033978701	47	41752697	49032685	0.365165917639896	3	1	0.365165917639896	3	1	7279988	2	31	38	1	FALSE	GAIN	PASS
659_bTo_pair	ATP8A2	13	25372071	26025851	FALSE	824	-0.820211361281197	14	23365275	27988570	0.365165917639896	1	0	0.365165917639896	1	0	4623295	1	32	37	2	FALSE	HETLOSS	PASS
659_bTo_pair	ATP8B1	18	57646426	57803315	FALSE	1105	-0.785555027616249	16	52752095	58670682	0.365165917639896	1	0	0.365165917639896	1	0	5918587	1	19	30	0	FALSE	HETLOSS	PASS
659_bTo_pair	ATP8B2	1	154325553	154351307	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	31	5	FALSE	DIPLOID	PASS
659_bTo_pair	ATP8B3	19	1782075	1812276	FALSE	1118	-0.58059819545476	23	1775405	2151345	0.186356639256811	1	0	0.186356639256811	1	0	375940	1	13	32	5	FALSE	HETLOSS	PASS
659_bTo_pair	ATP8B4	15	49858238	50182817	FALSE	906	-0.753975485974629	19	49508303	51105073	0.365165917639896	1	0	0.365165917639896	1	0	1596770	1	12	32	1	FALSE	HETLOSS	PASS
659_bTo_pair	ATP9A	20	51596514	51768634	FALSE	1218	-0.459978768286429	34	50587211	53185754	NA	2	NA	NA	2	NA	2598543	NA	12	29	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ATP9B	18	79069285	79378287	FALSE	1113	-0.883471952658051	12	75410842	80247341	0.365165917639896	1	0	0.365165917639896	1	0	4836499	1	17	31	2	FALSE	HETLOSS	PASS
659_bTo_pair	ATPAF1	1	46632737	46673867	FALSE	16	-0.485631979032023	30	46175602	48453048	1	2	1	1	2	1	2277446	1	32	15	2	FALSE	DIPLOID	PASS
659_bTo_pair	ATPAF2	17	17977409	18039209	FALSE	1014	-0.559544539688918	26	17247059	18028347	NA	2	NA	NA	2	NA	781288	NA	10	21	1	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	ATR	3	142449235	142578826	TRUE	247	1.08132017228419	81	142449379	142578694	0.364342740527346	12	NA	0.364342740527346	12	NA	129315	NA	1	61	6	FALSE	AMP	PASS
659_bTo_pair	ATRAID	2	27212027	27217178	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ATRIP	3	48446710	48467645	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	ATRN	20	3471040	3651122	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	31	1	FALSE	HETLOSS	PASS
659_bTo_pair	ATRNL1	10	115093365	115948992	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	32	0	FALSE	CNLOH	PASS
659_bTo_pair	ATRX	23	77504878	77786233	TRUE	1318	1.90313360838225	101	76177725	77786243	0.364342740527346	25	NA	0.364342740527346	25	NA	1608518	NA	4	75	2	FALSE	AMP	PASS
659_bTo_pair	ATXN1	6	16299112	16761491	FALSE	370	-0.377368469329801	39	15246548	20212233	NA	2	NA	NA	2	NA	4965685	NA	18	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ATXN10	22	45671798	45845307	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	12	0	FALSE	CNLOH	PASS
659_bTo_pair	ATXN1L	16	71845991	71885268	FALSE	983	-0.428709389755029	30	71178941	72171154	1	2	1	1	2	1	992213	1	22	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	ATXN2	12	111443485	111599676	TRUE	801	2.09861363294872	105	111406030	111453853	0.364342740527346	29	NA	0.364342740527346	29	NA	47823	NA	2	49	2	TRUE	AMP	PASS
659_bTo_pair	ATXN2L	16	28823035	28837237	FALSE	962	-0.522336070959039	29	27403203	28925074	NA	2	NA	NA	2	NA	1521871	NA	25	26	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ATXN3	14	92044496	92106625	FALSE	871	0.381682086445022	65	92003654	92083242	0.364342740527346	6	NA	0.364342740527346	6	NA	79588	NA	2	11	5	TRUE	AMP (many states)	PASS
659_bTo_pair	ATXN3L	23	13318236	13320399	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	5	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	ATXN7	3	63864557	64003462	FALSE	227	1.61487648244936	93	63863891	64003344	0.364342740527346	20	NA	0.364342740527346	20	NA	139453	NA	2	38	1	FALSE	AMP	PASS
659_bTo_pair	ATXN7L1	7	105605067	105876604	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	ATXN7L2	1	109483479	109492804	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	ATXN7L3	17	44191805	44200113	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ATXN7L3B	12	74537827	74545430	FALSE	792	-0.349776929755415	43	71610399	76348235	0.192136715055622	3	NA	0.192136715055622	3	NA	4737836	NA	18	2	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	AUH	9	91213815	91361913	FALSE	606	-0.547644280946133	27	91214370	95094057	1	2	1	1	2	1	3879687	1	31	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	AUNIP	1	25831913	25859458	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	AUP1	2	74526645	74529939	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AURKA	20	56369389	56392337	FALSE	1221	-0.44936578355072	34	56249153	58715213	NA	2	NA	NA	2	NA	2466060	NA	27	13	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AURKAIP1	1	1373730	1375495	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	4	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	AURKB	17	8204733	8210600	FALSE	1005	-0.533729334585785	29	8204923	8370291	NA	2	NA	NA	2	NA	165368	NA	9	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AURKC	19	57230802	57235548	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	8	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	AUTS2	7	69598296	70793495	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	28	0	FALSE	DIPLOID	PASS
659_bTo_pair	AVEN	15	33866227	34039176	FALSE	888	-0.723950250184678	19	32774281	34342000	0.365165917639896	1	0	0.365165917639896	1	0	1567719	1	10	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	AVIL	12	57797376	57818704	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	20	3	FALSE	DIPLOID	PASS
659_bTo_pair	AVL9	7	32495426	32588721	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	19	0	FALSE	GAIN	PASS
659_bTo_pair	AVP	20	3082556	3084724	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	AVPI1	10	97677424	97687323	FALSE	664	-0.371799025630062	36	96955124	97864220	0.365165917639896	2	0	0.365165917639896	2	0	909096	2	23	3	0	FALSE	CNLOH	PASS
659_bTo_pair	AVPR1A	12	63142759	63150942	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	AVPR1B	1	206109692	206117699	FALSE	69	-0.48847123055109	34	205798087	206732058	NA	2	NA	NA	2	NA	933971	NA	14	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	AVPR2	23	153902531	153907166	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	6	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	AWAT1	23	70234655	70240627	FALSE	1311	0.0481524733197309	56	68048478	70452009	0.365165917639896	4	NA	0.365165917639896	4	NA	2403531	NA	19	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	AWAT2	23	70040542	70049938	FALSE	1311	0.0481524733197309	56	68048478	70452009	0.365165917639896	4	NA	0.365165917639896	4	NA	2403531	NA	19	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	AXDND1	1	179365720	179554735	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	29	4	FALSE	DIPLOID	PASS
659_bTo_pair	AXIN1	16	287440	352673	TRUE	935	1.42687771208717	88	287490	352701	0.364342740527346	17	NA	0.364342740527346	17	NA	65211	NA	1	20	0	FALSE	AMP	PASS
659_bTo_pair	AXIN2	17	65528563	65561647	TRUE	1069	1.3084268828524	86	65528767	65561652	0.364342740527346	15	NA	0.364342740527346	15	NA	32885	NA	2	26	2	FALSE	AMP	PASS
659_bTo_pair	AXL	19	41219203	41261766	FALSE	1174	-0.111410976880113	53	40843904	41261582	0.273255132087987	4	NA	0.273255132087987	4	NA	417678	NA	8	32	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	AZGP1	7	99966720	99976157	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	AZI2	3	28315003	28349127	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	AZIN1	8	102826357	102893864	FALSE	561	-0.210477706860293	47	102652438	116770243	0.365165917639896	3	1	0.365165917639896	3	1	14117805	2	32	10	0	FALSE	GAIN	PASS
659_bTo_pair	AZIN2	1	33081104	33120530	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	AZU1	19	825097	832018	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	6	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	B2M	15	44711487	44718877	TRUE	903	1.99380250558258	104	44706364	44718941	0.364342740527346	26	NA	0.364342740527346	26	NA	12577	NA	2	13	0	FALSE	AMP	PASS
659_bTo_pair	B3GALNT1	3	161083883	161105384	FALSE	250	-0.231905273142314	46	156829339	161250770	0.298322295679939	3	NA	0.298322295679939	3	NA	4421431	NA	26	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	B3GALNT2	1	235449923	235504481	FALSE	82	-0.550278310688863	27	235196044	241494870	1	2	1	1	2	1	6298826	1	22	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	B3GALT1	2	167868948	167874041	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	B3GALT2	1	193179045	193186654	FALSE	59	1.14102161198349	83	193105312	193254819	0.364342740527346	13	NA	0.364342740527346	13	NA	149507	NA	3	5	0	FALSE	AMP	PASS
659_bTo_pair	B3GALT4	6	33277132	33284832	FALSE	389	-0.565050845620731	23	33163789	33316917	0.186356639256811	1	0	0.186356639256811	1	0	153128	1	13	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	B3GALT5	21	39556442	39673137	FALSE	1230	-0.572411047461507	26	38805300	41452836	NA	2	NA	NA	2	NA	2647536	NA	17	5	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	B3GALT6	1	1232226	1235041	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	B3GAT1	11	134378504	134411918	FALSE	734	-0.516486951202814	27	128842412	134387591	1	2	1	1	2	1	5545179	1	27	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	B3GAT2	6	70856679	70957038	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	B3GAT3	11	62615296	62622175	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	B3GLCT	13	31199936	31332276	FALSE	828	-0.893717680890687	13	28659152	32311865	0.365165917639896	1	0	0.365165917639896	1	0	3652713	1	17	15	2	FALSE	HETLOSS	PASS
659_bTo_pair	B3GNT2	2	62196113	62224731	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	B3GNT3	19	17794828	17813082	FALSE	1155	-0.249305971018279	46	17273895	17821522	0.298322295679939	3	NA	0.298322295679939	3	NA	547627	NA	25	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	B3GNT4	12	122203543	122208952	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	B3GNT5	3	183253244	183298504	FALSE	257	-0.467752053645755	34	183015432	183427906	NA	2	NA	NA	2	NA	412474	NA	4	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	B3GNT6	11	77034398	77041973	FALSE	710	-0.314972965919996	43	76659622	77285059	0.192136715055622	3	NA	0.192136715055622	3	NA	625437	NA	8	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	B3GNT7	2	231395543	231401164	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	B3GNT8	19	41425359	41428730	FALSE	1177	-0.671885212726332	22	41354916	42250573	0.291335969972972	1	0	0.291335969972972	1	0	895657	1	32	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	B3GNT9	16	67148105	67151214	FALSE	976	-0.467350965811123	34	67110264	67538977	NA	2	NA	NA	2	NA	428713	NA	24	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	B3GNTL1	17	82942155	83051810	FALSE	1085	-0.607666454607286	26	82405295	83094473	NA	2	NA	NA	2	NA	689178	NA	13	13	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	B4GALNT1	12	57623410	57633355	FALSE	783	2.14320148450594	107	57623476	57694137	0.364342740527346	30	NA	0.364342740527346	30	NA	70661	NA	3	32	0	FALSE	AMP	PASS
659_bTo_pair	B4GALNT2	17	49132460	49176840	FALSE	1051	-0.636429062465303	26	48785033	49576193	NA	2	NA	NA	2	NA	791160	NA	15	12	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	B4GALNT3	12	460364	563509	FALSE	737	-0.295216300061446	43	409362	894533	0.192136715055622	3	NA	0.192136715055622	3	NA	485171	NA	4	24	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	B4GALNT4	11	369796	382116	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	21	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	B4GALT1	9	33104082	33167356	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	7	0	FALSE	CNLOH	PASS
659_bTo_pair	B4GALT2	1	43978943	43991170	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	B4GALT3	1	161171310	161177968	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	B4GALT4	3	119211732	119241103	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	7	0	FALSE	GAIN	PASS
659_bTo_pair	B4GALT5	20	49632945	49713878	FALSE	1216	-0.465272765977354	30	47658376	50278257	1	2	1	1	2	1	2619881	1	18	9	2	FALSE	DIPLOID	PASS
659_bTo_pair	B4GALT6	18	31622247	31685836	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	9	0	FALSE	GAIN	PASS
659_bTo_pair	B4GALT7	5	177600100	177610347	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	B4GAT1	11	66345372	66347692	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	5	0	FALSE	GAIN	PASS
659_bTo_pair	B9D1	17	19337554	19378193	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	11	2	FALSE	CNLOH	PASS
659_bTo_pair	B9D2	19	41354421	41364173	FALSE	1177	-0.671885212726332	22	41354916	42250573	0.291335969972972	1	0	0.291335969972972	1	0	895657	1	32	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	BAALC	8	103140710	103230305	FALSE	561	-0.210477706860293	47	102652438	116770243	0.365165917639896	3	1	0.365165917639896	3	1	14117805	2	32	3	0	FALSE	GAIN	PASS
659_bTo_pair	BAAT	9	101360417	101383519	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	BABAM1	19	17267350	17281249	FALSE	1154	-0.533888138892061	27	16361883	17271664	1	2	1	1	2	1	909781	1	23	9	0	TRUE	DIPLOID	PASS
659_bTo_pair	BABAM2	2	27889941	28338901	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	BACE1	11	117285207	117316259	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	BACE2	21	41167801	41282518	FALSE	1230	-0.572411047461507	26	38805300	41452836	NA	2	NA	NA	2	NA	2647536	NA	17	13	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BACH1	21	29194071	29630751	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	22	2	FALSE	DIPLOID	PASS
659_bTo_pair	BACH2	6	89926529	90296908	TRUE	409	-0.443147941484883	34	89098919	90586786	NA	2	NA	NA	2	NA	1487867	NA	13	13	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BAD	11	64269830	64284704	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	BAG1	9	33247820	33264720	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	9	0	FALSE	CNLOH	PASS
659_bTo_pair	BAG2	6	57172326	57189833	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	BAG3	10	119651370	119677819	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	10	1	FALSE	CNLOH	PASS
659_bTo_pair	BAG4	8	38176533	38213301	FALSE	532	-0.898955944857558	13	37845201	38269206	0.365165917639896	1	0	0.365165917639896	1	0	424005	1	12	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	BAG5	14	103556544	103562831	FALSE	881	-0.341614784223633	43	103502897	103687181	0.192136715055622	3	NA	0.192136715055622	3	NA	184284	NA	7	7	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	BAG6	6	31639028	31652705	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	27	0	FALSE	HETLOSS	PASS
659_bTo_pair	BAHCC1	17	81395475	81466332	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	43	2	FALSE	DIPLOID	PASS
659_bTo_pair	BAHD1	15	40439721	40468242	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	BAIAP2	17	81035122	81117432	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	19	3	FALSE	DIPLOID	PASS
659_bTo_pair	BAIAP2L1	7	98291651	98401068	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	16	1	FALSE	HETLOSS	PASS
659_bTo_pair	BAIAP2L2	22	38084889	38110670	FALSE	1265	-0.53141020507802	29	38041114	39152464	NA	2	NA	NA	2	NA	1111350	NA	31	14	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BAIAP3	16	1333601	1349441	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	30	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	BAK1	6	33572547	33580293	FALSE	391	-0.499783837646083	34	33391964	35241176	NA	2	NA	NA	2	NA	1849212	NA	26	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BAMBI	10	28677342	28682939	FALSE	638	-0.441875687518437	32	27112127	31908266	0.365165917639896	2	0	0.365165917639896	2	0	4796139	2	18	5	1	FALSE	CNLOH	PASS
659_bTo_pair	BANF1	11	66002079	66004149	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	2	0	FALSE	GAIN	PASS
659_bTo_pair	BANF2	20	17693672	17735871	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	BANK1	4	101411286	102074812	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	19	4	FALSE	DIPLOID	PASS
659_bTo_pair	BANP	16	87949244	88077318	FALSE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	14	2	FALSE	HETLOSS	PASS
659_bTo_pair	BAP1	3	52401013	52410350	TRUE	223	0.895331456142884	76	52400316	52412349	0.364342740527346	11	NA	0.364342740527346	11	NA	12033	NA	3	28	1	FALSE	AMP	PASS
659_bTo_pair	BARD1	2	214725646	214809711	TRUE	175	1.19125700322996	84	214725686	214809652	0.364342740527346	14	NA	0.364342740527346	14	NA	83966	NA	1	37	0	FALSE	AMP	PASS
659_bTo_pair	BARHL1	9	132582185	132590266	FALSE	625	-0.794391185935477	14	131261330	132889947	0.365165917639896	1	0	0.365165917639896	1	0	1628617	1	17	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	BARHL2	1	90711539	90717237	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	BARX1	9	93951622	93955372	FALSE	606	-0.547644280946133	27	91214370	95094057	1	2	1	1	2	1	3879687	1	31	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	BARX2	11	129375940	129452279	FALSE	734	-0.516486951202814	27	128842412	134387591	1	2	1	1	2	1	5545179	1	27	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	BASP1	5	17065598	17276843	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	3	0	FALSE	GAIN	PASS
659_bTo_pair	BATF	14	75522425	75547015	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	BATF2	11	64987943	64997045	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	6	1	FALSE	GAIN	PASS
659_bTo_pair	BATF3	1	212686418	212699985	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	BAX	19	48954815	48961798	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	BAZ1A	14	34752731	34875647	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	31	0	FALSE	DIPLOID	PASS
659_bTo_pair	BAZ1B	7	73440398	73522278	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	29	0	FALSE	DIPLOID	PASS
659_bTo_pair	BAZ2A	12	56595596	56636816	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	37	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BAZ2B	2	159318979	159616692	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	46	3	FALSE	DIPLOID	PASS
659_bTo_pair	BBC3	19	47220822	47232766	TRUE	1187	-0.64296711085636	26	47021158	48297657	NA	2	NA	NA	2	NA	1276499	NA	31	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BBIP1	10	110898730	110919274	FALSE	671	-0.443752838916331	34	110781853	112815244	NA	2	NA	NA	2	NA	2033391	NA	10	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BBOF1	14	74019353	74082863	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	27	3	FALSE	DIPLOID	PASS
659_bTo_pair	BBOX1	11	27040725	27127809	FALSE	690	-0.499672577426227	34	26697185	32104345	NA	2	NA	NA	2	NA	5407160	NA	20	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BBS1	11	66510606	66533627	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	19	2	FALSE	GAIN	PASS
659_bTo_pair	BBS10	12	76344474	76348442	FALSE	792	-0.349776929755415	43	71610399	76348235	0.192136715055622	3	NA	0.192136715055622	3	NA	4737836	NA	18	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	BBS12	4	122732702	122744943	FALSE	295	0.44988415470771	66	122620917	122892167	0.364342740527346	7	NA	0.364342740527346	7	NA	271250	NA	4	9	2	FALSE	INDETERMINATE	PASS
659_bTo_pair	BBS2	16	56466836	56520283	FALSE	968	-0.505434692233225	30	51151209	56683230	1	2	1	1	2	1	5532021	1	34	27	2	FALSE	DIPLOID	PASS
659_bTo_pair	BBS4	15	72686179	72738476	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	BBS5	2	169479178	169506655	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	BBS7	4	121824440	121870497	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	19	2	FALSE	DIPLOID	PASS
659_bTo_pair	BBS9	7	33129244	33606068	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	22	1	FALSE	GAIN	PASS
659_bTo_pair	BBX	3	107522936	107811324	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	18	0	FALSE	GAIN	PASS
659_bTo_pair	BCAM	19	44809059	44821421	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	BCAN	1	156641390	156659532	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	20	1	FALSE	DIPLOID	PASS
659_bTo_pair	BCAP29	7	107579977	107629170	FALSE	488	-0.464127371400283	34	107070260	116559206	NA	2	NA	NA	2	NA	9488946	NA	33	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BCAP31	23	153700492	153724746	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	8	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	BCAR1	16	75228187	75268053	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	21	1	FALSE	DIPLOID	PASS
659_bTo_pair	BCAR3	1	93561786	93847150	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	BCAS1	20	53936777	54070594	FALSE	1219	1.86887273600527	100	53253696	53944986	0.364342740527346	24	NA	0.364342740527346	24	NA	691290	NA	3	14	3	TRUE	AMP	PASS
659_bTo_pair	BCAS2	1	114567557	114581639	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	BCAS3	17	60677453	61392838	FALSE	1062	-0.555528439510251	26	60671378	61590660	NA	2	NA	NA	2	NA	919282	NA	4	28	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BCAS4	20	50794894	50882676	FALSE	1218	-0.459978768286429	34	50587211	53185754	NA	2	NA	NA	2	NA	2598543	NA	12	5	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BCAT1	12	24810022	24949459	FALSE	757	-0.490002350483383	34	21512373	25195063	NA	2	NA	NA	2	NA	3682690	NA	15	12	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BCAT2	19	48795062	48811029	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	BCCIP	10	125823546	125853695	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	16	0	FALSE	CNLOH	PASS
659_bTo_pair	BCDIN3D	12	49836039	49843129	FALSE	770	-0.500134310902258	34	49065087	50081631	NA	2	NA	NA	2	NA	1016544	NA	25	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BCHE	3	165772904	165837472	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	9	0	FALSE	GAIN	PASS
659_bTo_pair	BCKDHA	19	41397460	41425005	FALSE	1177	-0.671885212726332	22	41354916	42250573	0.291335969972972	1	0	0.291335969972972	1	0	895657	1	32	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	BCKDHB	6	80106647	80346270	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	BCKDK	16	31106107	31112791	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	10	2	FALSE	DIPLOID	PASS
659_bTo_pair	BCL10	1	85265776	85276904	TRUE	28	1.68597994832868	96	85258645	85350451	0.364342740527346	21	NA	0.364342740527346	21	NA	91806	NA	3	12	0	FALSE	AMP	PASS
659_bTo_pair	BCL11A	2	60450520	60555154	FALSE	114	1.5382272371064	91	58164586	60546252	0.364342740527346	18	NA	0.364342740527346	18	NA	2381666	NA	2	13	0	TRUE	AMP	PASS
659_bTo_pair	BCL11B	14	99169287	99271524	TRUE	876	-0.546199181806584	27	96039535	102050530	1	2	1	1	2	1	6010995	1	30	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	BCL2	18	63123346	63320128	FALSE	1110	2.32272186125252	110	62978328	63319810	0.364342740527346	34	NA	0.364342740527346	34	NA	341482	NA	2	44	4	FALSE	AMP	PASS
659_bTo_pair	BCL2A1	15	79960889	79971446	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	BCL2L1	20	31664452	31723989	FALSE	1200	2.72266749181775	117	31644862	31724022	0.364342740527346	46	NA	0.364342740527346	46	NA	79160	NA	2	14	0	FALSE	AMP	PASS
659_bTo_pair	BCL2L10	15	52109263	52112775	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	BCL2L11	2	111119378	111168447	TRUE	135	2.35781455028401	111	111121109	111769289	0.364342740527346	35	NA	0.364342740527346	35	NA	648180	NA	2	29	2	FALSE	AMP	PASS
659_bTo_pair	BCL2L12	19	49665142	49673916	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	BCL2L13	22	17628855	17730855	FALSE	1240	-0.594689860601271	26	15528179	18606839	NA	2	NA	NA	2	NA	3078660	NA	21	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BCL2L14	12	12049844	12211084	FALSE	751	-0.581914964256938	26	12079319	12707317	NA	2	NA	NA	2	NA	627998	NA	7	32	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BCL2L15	1	113878168	113887547	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	BCL2L2	14	23298790	23311759	FALSE	850	-0.604709518345526	26	22902059	23302562	NA	2	NA	NA	2	NA	400503	NA	18	20	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	BCL2L2-PABPN1	14	23306835	23325369	FALSE	851	2.73742608638706	117	23306902	23322235	0.364342740527346	47	NA	0.364342740527346	47	NA	15333	NA	3	24	0	TRUE	AMP	PASS
659_bTo_pair	BCL3	19	44747705	44760044	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	BCL6	3	187721377	187745727	FALSE	266	2.46662490433598	113	187721435	187745496	0.364342740527346	38	NA	0.364342740527346	38	NA	24061	NA	1	21	2	FALSE	AMP	PASS
659_bTo_pair	BCL6B	17	7023020	7030290	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	BCL7A	12	122019422	122062044	FALSE	814	-0.652137007233431	22	121849022	122019673	0.291335969972972	1	0	0.291335969972972	1	0	170651	1	5	23	5	TRUE	HETLOSS	PASS
659_bTo_pair	BCL7B	7	73536356	73558002	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	BCL7C	16	30833626	30894960	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	BCL9	1	147541412	147626216	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	BCL9L	11	118893875	118925608	FALSE	728	-0.487905654975058	30	118527582	119195409	1	2	1	1	2	1	667827	1	26	25	0	FALSE	DIPLOID	PASS
659_bTo_pair	BCLAF1	6	136256627	136289851	FALSE	427	-0.614116824618693	26	135285680	137161691	NA	2	NA	NA	2	NA	1876011	NA	10	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BCLAF3	23	19912860	19970298	FALSE	1276	0.0763243231691416	59	15827382	20064777	0.308533751035793	5	NA	0.308533751035793	5	NA	4237395	NA	24	15	0	FALSE	AMP (many states)	PASS
659_bTo_pair	BCO1	16	81238448	81291142	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	BCO2	11	112175467	112224699	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	BCOR	23	40049815	40177329	TRUE	1287	2.04998533027557	105	38805075	40152950	0.364342740527346	28	NA	0.364342740527346	28	NA	1347875	NA	2	50	3	TRUE	AMP	PASS
659_bTo_pair	BCORL1	23	129981107	130058083	TRUE	1334	1.94350171509353	102	129921187	130057891	0.364342740527346	25	NA	0.364342740527346	25	NA	136704	NA	2	45	0	FALSE	AMP	PASS
659_bTo_pair	BCR	22	23179704	23318037	FALSE	1251	1.66891438723588	94	23180623	23317346	0.364342740527346	20	6	0.364342740527346	20	6	136723	14	1	171	28	TRUE	AMP	PASS
659_bTo_pair	BCS1L	2	218658764	218663443	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	BDH1	3	197509783	197573323	FALSE	271	-0.194588974812627	47	196198492	198169864	0.365165917639896	3	1	0.365165917639896	3	1	1971372	2	29	7	0	FALSE	GAIN	PASS
659_bTo_pair	BDH2	4	103079435	103099883	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	BDKRB1	14	96255824	96268967	FALSE	876	-0.546199181806584	27	96039535	102050530	1	2	1	1	2	1	6010995	1	30	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	BDKRB2	14	96204679	96244166	FALSE	876	-0.546199181806584	27	96039535	102050530	1	2	1	1	2	1	6010995	1	30	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	BDNF	11	27654893	27722058	FALSE	690	-0.499672577426227	34	26697185	32104345	NA	2	NA	NA	2	NA	5407160	NA	20	8	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BDP1	5	71455615	71567820	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	52	4	FALSE	HETLOSS	PASS
659_bTo_pair	BEAN1	16	66427297	66493529	FALSE	973	-0.642771892390385	26	64948130	66912568	NA	2	NA	NA	2	NA	1964438	NA	17	8	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BECN1	17	42810134	42833350	FALSE	1040	-0.646197503395479	26	42761348	43039396	NA	2	NA	NA	2	NA	278048	NA	18	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BECN2	1	241957767	241959062	FALSE	84	-0.392646983169906	39	241532515	243426393	NA	2	NA	NA	2	NA	1893878	NA	10	5	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BEGAIN	14	100537147	100587413	FALSE	876	-0.546199181806584	27	96039535	102050530	1	2	1	1	2	1	6010995	1	30	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	BEND2	23	18162931	18220883	FALSE	1276	0.0763243231691416	59	15827382	20064777	0.308533751035793	5	NA	0.308533751035793	5	NA	4237395	NA	24	18	0	FALSE	AMP (many states)	PASS
659_bTo_pair	BEND3	6	107065182	107115269	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	BEND4	4	42110938	42152878	FALSE	282	-0.204234033978701	47	41752697	49032685	0.365165917639896	3	1	0.365165917639896	3	1	7279988	2	31	8	0	FALSE	GAIN	PASS
659_bTo_pair	BEND5	1	48727523	48776969	FALSE	17	-0.451021898823112	34	48472019	50857895	NA	2	NA	NA	2	NA	2385876	NA	6	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BEND6	6	56955126	57027342	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	BEND7	10	13438484	13528974	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	11	0	FALSE	CNLOH	PASS
659_bTo_pair	BEST1	11	61949821	61965515	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	17	1	FALSE	GAIN	PASS
659_bTo_pair	BEST2	19	12751702	12758458	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	BEST3	12	69643360	69699476	FALSE	790	-0.377310724638489	39	69586733	71157609	NA	2	NA	NA	2	NA	1570876	NA	11	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BEST4	1	44783585	44787705	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	BET1	7	93962762	94004382	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	BET1L	11	167784	207428	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	13	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	BEX1	23	103062651	103064240	FALSE	1321	0.439394403838451	66	101391440	103377786	0.364342740527346	7	NA	0.364342740527346	7	NA	1986346	NA	34	2	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	BEX2	23	103309346	103311046	FALSE	1321	0.439394403838451	66	101391440	103377786	0.364342740527346	7	NA	0.364342740527346	7	NA	1986346	NA	34	4	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	BEX3	23	103376340	103378077	FALSE	1321	0.439394403838451	66	101391440	103377786	0.364342740527346	7	NA	0.364342740527346	7	NA	1986346	NA	34	3	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	BEX4	23	103215092	103217246	FALSE	1321	0.439394403838451	66	101391440	103377786	0.364342740527346	7	NA	0.364342740527346	7	NA	1986346	NA	34	2	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	BEX5	23	102153708	102156057	FALSE	1321	0.439394403838451	66	101391440	103377786	0.364342740527346	7	NA	0.364342740527346	7	NA	1986346	NA	34	2	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	BFAR	16	14632815	14669236	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	BFSP1	20	17493905	17569220	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	BFSP2	3	133399995	133475222	FALSE	242	-0.32037413513609	40	130560427	134790274	0.308149309490068	3	1	0.308149309490068	3	1	4229847	2	29	8	1	FALSE	GAIN	PASS
659_bTo_pair	BGLAP	1	156241962	156243321	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	BGN	23	153494939	153509554	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	8	3	FALSE	INDETERMINATE	PASS
659_bTo_pair	BHLHA15	7	98211427	98212979	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	BHLHA9	17	1270559	1271460	FALSE	996	-0.883704003468192	13	148164	1298296	0.365165917639896	1	0	0.365165917639896	1	0	1150132	1	14	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	BHLHB9	23	102720688	102753540	FALSE	1321	0.439394403838451	66	101391440	103377786	0.364342740527346	7	NA	0.364342740527346	7	NA	1986346	NA	34	7	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	BHLHE22	8	64580367	64583628	FALSE	550	-0.186881774239562	48	60208949	67746087	0.365165917639896	3	NA	0.365165917639896	3	NA	7537138	NA	33	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	BHLHE23	20	63005927	63007035	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	BHLHE40	3	4979116	4985323	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	BHLHE41	12	26120026	26125127	FALSE	759	-0.427669886187443	30	25503824	31088026	1	2	1	1	2	1	5584202	1	28	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	BHMG1	19	45733251	45764534	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	15	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	BHMT	5	79111779	79132290	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	BHMT2	5	79069717	79089466	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	BICC1	10	58513140	58831437	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	21	2	FALSE	CNLOH	PASS
659_bTo_pair	BICD1	12	32106835	32383633	FALSE	760	-0.171000692864655	50	31089058	38321207	0.218007130395584	4	2	0.218007130395584	4	2	7232149	2	15	18	1	FALSE	TETRAPLOID	PASS
659_bTo_pair	BICD2	9	92711363	92764812	FALSE	606	-0.547644280946133	27	91214370	95094057	1	2	1	1	2	1	3879687	1	31	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	BICDL1	12	119989869	120094494	FALSE	808	-0.531025796359709	27	115966146	120090026	1	2	1	1	2	1	4123880	1	23	10	0	TRUE	DIPLOID	PASS
659_bTo_pair	BICDL2	16	3027682	3036926	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	BICRA	19	47608196	47703277	FALSE	1187	-0.64296711085636	26	47021158	48297657	NA	2	NA	NA	2	NA	1276499	NA	31	25	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BICRAL	6	42746958	42868560	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	BID	22	17734138	17774770	FALSE	1240	-0.594689860601271	26	15528179	18606839	NA	2	NA	NA	2	NA	3078660	NA	21	6	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BIK	22	43110748	43129712	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	4	0	FALSE	CNLOH	PASS
659_bTo_pair	BIN1	2	127048027	127107355	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	22	2	FALSE	DIPLOID	PASS
659_bTo_pair	BIN2	12	51281038	51324668	FALSE	772	-0.61197679162419	26	50109466	51920864	NA	2	NA	NA	2	NA	1811398	NA	27	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BIN3	8	22620418	22669148	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	BIRC2	11	102347211	102378670	FALSE	720	1.69499336359402	96	102110536	102350971	0.364342740527346	21	NA	0.364342740527346	21	NA	240435	NA	3	12	0	TRUE	AMP	PASS
659_bTo_pair	BIRC3	11	102317450	102339403	FALSE	720	1.69499336359402	96	102110536	102350971	0.364342740527346	21	NA	0.364342740527346	21	NA	240435	NA	3	31	1	FALSE	AMP	PASS
659_bTo_pair	BIRC5	17	78214186	78225636	FALSE	1080	-0.537824093701074	27	76741010	78870935	1	2	1	1	2	1	2129925	1	20	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	BIRC6	2	32357028	32618899	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	89	4	FALSE	DIPLOID	PASS
659_bTo_pair	BIRC7	20	63235883	63240507	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	BIRC8	19	53289601	53291626	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	BIVM	13	102799049	102841535	FALSE	840	-0.335776033141145	43	102193037	102839809	0.192136715055622	3	NA	0.192136715055622	3	NA	646772	NA	9	12	0	TRUE	GAIN (many states)	PASS
659_bTo_pair	BIVM-ERCC5	13	102799110	102875994	FALSE	840	-0.335776033141145	43	102193037	102839809	0.192136715055622	3	NA	0.192136715055622	3	NA	646772	NA	9	45	1	TRUE	GAIN (many states)	PASS
659_bTo_pair	BLCAP	20	37492472	37527931	FALSE	1205	-0.619744376635615	23	37518926	41023791	0.186356639256811	1	0	0.186356639256811	1	0	3504865	1	19	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	BLID	11	122115354	122116215	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	2	1	FALSE	DIPLOID	PASS
659_bTo_pair	BLK	8	11486894	11564604	FALSE	516	-0.746159577374248	19	10611830	11564127	0.365165917639896	1	0	0.365165917639896	1	0	952297	1	9	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	BLM	15	90717327	90816165	TRUE	928	0.797158855072889	75	90717363	90875863	0.364342740527346	10	NA	0.364342740527346	10	NA	158500	NA	2	39	0	FALSE	AMP	PASS
659_bTo_pair	BLMH	17	30248195	30292056	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	BLNK	10	96191702	96271587	FALSE	663	-0.556688707084635	24	94775074	96952170	0.359751661895656	2	0	0.359751661895656	2	0	2177096	2	21	17	1	FALSE	CNLOH	PASS
659_bTo_pair	BLOC1S1	12	55716037	55720087	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	BLOC1S1-RDH5	12	55716036	55724703	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	BLOC1S2	10	100273280	100286712	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	6	1	FALSE	CNLOH	PASS
659_bTo_pair	BLOC1S3	19	45178745	45181801	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	3	1	FALSE	HETLOSS	PASS
659_bTo_pair	BLOC1S4	4	6716055	6717671	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	3	0	FALSE	GAIN	PASS
659_bTo_pair	BLOC1S5	6	8013567	8064414	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	BLOC1S5-TXNDC5	6	7881522	8064364	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	BLOC1S6	15	45587123	45615999	FALSE	904	-0.666047806656427	20	44736698	49422632	0.365165917639896	1	0	0.365165917639896	1	0	4685934	1	30	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	BLVRA	7	43758680	43807342	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	8	3	FALSE	GAIN	PASS
659_bTo_pair	BLVRB	19	40447765	40465840	FALSE	1173	-0.760690164248215	19	40322104	40807873	0.365165917639896	1	0	0.365165917639896	1	0	485769	1	21	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	BLZF1	1	169367970	169396540	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	BMF	15	40087890	40108892	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	BMI1	10	22321211	22331484	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	9	0	FALSE	CNLOH	PASS
659_bTo_pair	BMP1	8	22164736	22212326	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	24	0	FALSE	HETLOSS	PASS
659_bTo_pair	BMP10	2	68865481	68871517	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	BMP15	23	50910784	50916607	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	BMP2	20	6767664	6780280	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	6	3	FALSE	HETLOSS	PASS
659_bTo_pair	BMP2K	4	78776342	78916372	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	21	4	FALSE	DIPLOID	PASS
659_bTo_pair	BMP3	4	81030965	81057531	FALSE	289	-0.397475195823872	39	80335777	83458331	NA	2	NA	NA	2	NA	3122554	NA	19	7	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BMP4	14	53949736	53958761	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	BMP5	6	55753645	55875564	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	9	2	FALSE	DIPLOID	PASS
659_bTo_pair	BMP6	6	7726797	7881422	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	9	4	FALSE	DIPLOID	PASS
659_bTo_pair	BMP7	20	57168748	57266629	FALSE	1221	-0.44936578355072	34	56249153	58715213	NA	2	NA	NA	2	NA	2466060	NA	27	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BMP8A	1	39491646	39525935	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	BMP8B	1	39757182	39788861	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	15	5	FALSE	DIPLOID	PASS
659_bTo_pair	BMPER	7	33904308	34156356	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	17	1	FALSE	GAIN	PASS
659_bTo_pair	BMPR1A	10	86756601	86932838	TRUE	654	-0.117897337301186	53	86692112	86911232	0.273255132087987	4	NA	0.273255132087987	4	NA	219120	NA	2	35	5	TRUE	GAIN (many states)	PASS
659_bTo_pair	BMPR1B	4	94757968	95158448	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	BMPR2	2	202376936	202567751	FALSE	166	-0.425780118113581	30	201288659	203854096	1	2	1	1	2	1	2565437	1	22	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	BMS1	10	42782801	42834937	FALSE	640	-0.421497241268382	32	32269100	43094667	0.365165917639896	2	0	0.365165917639896	2	0	10825567	2	20	25	0	FALSE	CNLOH	PASS
659_bTo_pair	BMT2	7	112819147	112939916	FALSE	488	-0.464127371400283	34	107070260	116559206	NA	2	NA	NA	2	NA	9488946	NA	33	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BMX	23	15464246	15556529	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	21	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	BNC1	15	83255903	83284714	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	15	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	BNC2	9	16409503	16870843	FALSE	581	-0.746183084602222	19	10618009	19786745	0.365165917639896	1	0	0.365165917639896	1	0	9168736	1	24	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	BNIP1	5	173144442	173164387	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	BNIP2	15	59659146	59689534	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	13	3	FALSE	HETLOSS	PASS
659_bTo_pair	BNIP3	10	131966455	131982013	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	6	0	FALSE	CNLOH	PASS
659_bTo_pair	BNIP3L	8	26382898	26505636	FALSE	522	-0.616914645700195	26	26383178	27467373	NA	2	NA	NA	2	NA	1084195	NA	8	6	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BNIPL	1	151036321	151047720	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	BOC	3	113211003	113287459	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	25	3	FALSE	GAIN	PASS
659_bTo_pair	BOD1	5	173607514	173616660	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	BOD1L1	4	13568738	13627723	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	51	1	FALSE	GAIN	PASS
659_bTo_pair	BOD1L2	18	57147062	57150300	FALSE	1105	-0.785555027616249	16	52752095	58670682	0.365165917639896	1	0	0.365165917639896	1	0	5918587	1	19	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	BOK	2	241551424	241574138	FALSE	194	-0.588828356865968	23	240025214	241817025	0.186356639256811	1	0	0.186356639256811	1	0	1791811	1	34	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	BOLA1	1	149887890	149900798	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	BOLA2	16	29443056	29454964	FALSE	965	-0.735005669796309	19	28989573	29982749	0.365165917639896	1	0	0.365165917639896	1	0	993176	1	25	1	1	FALSE	HETLOSS	PASS
659_bTo_pair	BOLA2-SMG1P6	16	29443230	29454651	FALSE	965	-0.735005669796309	19	28989573	29982749	0.365165917639896	1	0	0.365165917639896	1	0	993176	1	25	1	1	FALSE	HETLOSS	PASS
659_bTo_pair	BOLA3	2	74135398	74147994	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BOLL	2	197726879	197786762	FALSE	163	-0.632896131155704	26	197453631	198083720	NA	2	NA	NA	2	NA	630089	NA	9	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BOP1	8	144262102	144291370	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	BORA	13	72727749	72756198	FALSE	836	-0.444239733377228	32	50956423	72747004	0.365165917639896	2	0	0.365165917639896	2	0	21790581	2	40	27	0	TRUE	CNLOH	PASS
659_bTo_pair	BORCS5	12	12357079	12469694	FALSE	751	-0.581914964256938	26	12079319	12707317	NA	2	NA	NA	2	NA	627998	NA	7	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BORCS6	17	8188333	8190907	FALSE	1004	-0.905703364358502	13	8096639	8190110	0.365165917639896	1	0	0.365165917639896	1	0	93471	1	7	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	BORCS7	10	102854223	102864961	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	5	0	FALSE	CNLOH	PASS
659_bTo_pair	BORCS7-ASMT	10	102854272	102901899	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	16	0	FALSE	CNLOH	PASS
659_bTo_pair	BORCS8	19	19176903	19192591	FALSE	1160	2.36156194446054	111	19145673	19180708	0.364342740527346	35	NA	0.364342740527346	35	NA	35035	NA	3	5	0	TRUE	AMP	PASS
659_bTo_pair	BORCS8-MEF2B	19	19145567	19192158	FALSE	1160	2.36156194446054	111	19145673	19180708	0.364342740527346	35	NA	0.364342740527346	35	NA	35035	NA	3	17	1	TRUE	AMP	PASS
659_bTo_pair	BPGM	7	134646808	134679813	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	BPHL	6	3118374	3153578	FALSE	367	1.47285136172973	90	3076905	3118764	0.364342740527346	17	NA	0.364342740527346	17	NA	41859	NA	2	8	1	TRUE	AMP	PASS
659_bTo_pair	BPI	20	38304123	38337505	FALSE	1205	-0.619744376635615	23	37518926	41023791	0.186356639256811	1	0	0.186356639256811	1	0	3504865	1	19	15	5	FALSE	HETLOSS	PASS
659_bTo_pair	BPIFA1	20	33235995	33243311	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	BPIFA2	20	33161768	33181412	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	BPIFA3	20	33217310	33227758	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	BPIFB1	20	33273480	33309878	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	15	2	FALSE	DIPLOID	PASS
659_bTo_pair	BPIFB2	20	33007600	33023709	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	BPIFB3	20	33055424	33073628	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	BPIFB4	20	33079644	33111751	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	19	1	FALSE	DIPLOID	PASS
659_bTo_pair	BPIFB6	20	33031648	33044047	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	BPIFC	22	32413847	32464484	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	15	0	FALSE	CNLOH	PASS
659_bTo_pair	BPNT1	1	220057482	220090462	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	BPTF	17	67825524	67984378	FALSE	1070	-0.476939588153593	30	65635933	68457397	1	2	1	1	2	1	2821464	1	18	50	0	FALSE	DIPLOID	PASS
659_bTo_pair	BRAF	7	140719327	140924928	FALSE	499	1.55779454857431	91	140719450	140924965	0.364342740527346	19	NA	0.364342740527346	19	NA	205515	NA	2	137	2	FALSE	AMP	PASS
659_bTo_pair	BRAP	12	111642146	111685986	FALSE	802	-0.463173510714366	34	111455064	112408626	NA	2	NA	NA	2	NA	953562	NA	12	13	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BRAT1	7	2537877	2555727	FALSE	451	-0.380727397700309	39	2432806	2844144	NA	2	NA	NA	2	NA	411338	NA	8	19	5	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BRCA1	17	43044295	43170245	TRUE	1041	1.08666351327219	81	43044346	43125357	0.364342740527346	12	NA	0.364342740527346	12	NA	81011	NA	1	120	2	TRUE	AMP	PASS
659_bTo_pair	BRCA2	13	32315474	32400266	TRUE	829	1.00930071299619	80	32315134	32400233	0.364342740527346	12	NA	0.364342740527346	12	NA	85099	NA	2	86	6	FALSE	AMP	PASS
659_bTo_pair	BRCC3	23	155071420	155123074	FALSE	1341	-0.0231097163941018	55	154552015	155545250	0.328696605851359	4	NA	0.328696605851359	4	NA	993235	NA	23	11	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	BRD1	22	49773283	49827512	FALSE	1271	-0.350898193716427	41	45922979	50285791	0.284729887459054	3	0	0.284729887459054	3	0	4362812	3	30	22	1	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	BRD2	6	32968660	32981505	FALSE	387	-0.700033625693903	22	32969066	32980597	0.291335969972972	1	0	0.291335969972972	1	0	11531	1	2	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	BRD3	9	134030305	134068535	FALSE	627	-0.867007674319489	12	132986776	134157867	0.365165917639896	1	0	0.365165917639896	1	0	1171091	1	28	19	1	FALSE	HETLOSS	PASS
659_bTo_pair	BRD3OS	9	134025439	134034666	FALSE	627	-0.867007674319489	12	132986776	134157867	0.365165917639896	1	0	0.365165917639896	1	0	1171091	1	28	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	BRD4	19	15235519	15332545	FALSE	1150	1.68996571363671	95	15159043	15332467	0.364342740527346	21	9	0.364342740527346	21	9	173424	12	3	55	2	FALSE	AMP	PASS
659_bTo_pair	BRD7	16	50313487	50368934	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	BRD8	5	138139766	138178986	FALSE	336	-0.752536733071469	19	135941639	138575278	0.365165917639896	1	0	0.365165917639896	1	0	2633639	1	24	33	1	FALSE	HETLOSS	PASS
659_bTo_pair	BRD9	5	850291	892824	FALSE	308	-0.255094097331532	44	92297	1246091	0.345317016959666	3	1	0.345317016959666	3	1	1153794	2	18	16	1	FALSE	GAIN	PASS
659_bTo_pair	BRDT	1	91949371	92014426	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	20	3	FALSE	DIPLOID	PASS
659_bTo_pair	BRF1	14	105209286	105315589	FALSE	885	-0.488568816150345	30	104868462	105529782	1	2	1	1	2	1	661320	1	18	30	0	FALSE	DIPLOID	PASS
659_bTo_pair	BRF2	8	37843268	37849904	FALSE	531	1.03318219495514	81	37796929	37844954	0.364342740527346	12	NA	0.364342740527346	12	NA	48025	NA	2	12	1	TRUE	AMP	PASS
659_bTo_pair	BRI3	7	98252379	98310441	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	BRI3BP	12	124993700	125031231	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	BRICD5	16	2209253	2211950	FALSE	942	-0.803500535593988	16	2178660	2530995	0.365165917639896	1	0	0.365165917639896	1	0	352335	1	18	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	BRINP1	9	119153458	119369467	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	BRINP2	1	177171497	177282422	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	BRINP3	1	190097662	190478404	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	BRIP1	17	61681266	61863521	TRUE	1063	1.20779593956274	84	61590991	61863583	0.364342740527346	14	NA	0.364342740527346	14	NA	272592	NA	2	49	4	FALSE	AMP	PASS
659_bTo_pair	BRIX1	5	34915376	34925996	FALSE	312	-0.206081392785099	47	24487677	35857105	0.365165917639896	3	1	0.365165917639896	3	1	11369428	2	27	11	1	FALSE	GAIN	PASS
659_bTo_pair	BRK1	3	10115592	10127190	FALSE	198	0.122401387291047	59	10021483	10178045	0.308533751035793	5	NA	0.308533751035793	5	NA	156562	NA	5	3	0	FALSE	AMP (many states)	PASS
659_bTo_pair	BRMS1	11	66337333	66345125	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	10	0	FALSE	GAIN	PASS
659_bTo_pair	BRMS1L	14	35826318	35932325	FALSE	854	-0.32038786389426	43	35534938	36513130	0.192136715055622	3	NA	0.192136715055622	3	NA	978192	NA	5	10	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	BROX	1	222712553	222735196	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	BRPF1	3	9731729	9748018	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	BRPF3	6	36196744	36232790	FALSE	393	-0.47521086997284	30	35476361	36677919	1	2	1	1	2	1	1201558	1	21	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	BRS3	23	136487887	136493780	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	BRSK1	19	55282072	55312533	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	20	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	BRSK2	11	1389899	1462689	FALSE	679	-0.702000712925199	21	1256247	1938477	0.140309795179477	0	0	0.140309795179477	0	0	682230	0	19	26	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	BRWD1	21	39184176	39321559	FALSE	1230	-0.572411047461507	26	38805300	41452836	NA	2	NA	NA	2	NA	2647536	NA	17	51	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BRWD3	23	80670854	80809688	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	45	1	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	BSCL2	11	62690275	62709845	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	14	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	BSDC1	1	32365103	32394731	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	BSG	19	571277	583493	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	11	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	BSN	3	49554489	49671545	FALSE	218	-0.900819276070563	13	49413105	49683092	0.365165917639896	1	0	0.365165917639896	1	0	269987	1	7	48	0	FALSE	HETLOSS	PASS
659_bTo_pair	BSND	1	54998193	55011784	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	BSPH1	19	47968046	47992170	FALSE	1187	-0.64296711085636	26	47021158	48297657	NA	2	NA	NA	2	NA	1276499	NA	31	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BSPRY	9	113349541	113371233	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	8	2	TRUE	DIPLOID	PASS
659_bTo_pair	BST1	4	15702950	15738313	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	10	0	FALSE	GAIN	PASS
659_bTo_pair	BST2	19	17402939	17405648	FALSE	1155	-0.249305971018279	46	17273895	17821522	0.298322295679939	3	NA	0.298322295679939	3	NA	547627	NA	25	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	BSX	11	122977570	122981720	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	BTAF1	10	91923769	92030325	FALSE	662	-0.410954559094016	36	89715119	94762760	0.365165917639896	2	0	0.365165917639896	2	0	5047641	2	33	39	0	FALSE	CNLOH	PASS
659_bTo_pair	BTBD1	15	83016422	83067354	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	9	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	BTBD10	11	13388001	13463297	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	BTBD11	12	107318413	107659642	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	23	2	FALSE	DIPLOID	PASS
659_bTo_pair	BTBD16	10	122271306	122338162	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	16	2	FALSE	CNLOH	PASS
659_bTo_pair	BTBD17	17	74356416	74361946	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	BTBD18	11	57743514	57751781	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	9	0	FALSE	GAIN	PASS
659_bTo_pair	BTBD19	1	44808482	44815585	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	BTBD2	19	1985438	2034881	FALSE	1118	-0.58059819545476	23	1775405	2151345	0.186356639256811	1	0	0.186356639256811	1	0	375940	1	13	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	BTBD3	20	11890723	11926609	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	BTBD6	14	105248490	105251093	FALSE	885	-0.488568816150345	30	104868462	105529782	1	2	1	1	2	1	661320	1	18	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	BTBD7	14	93237550	93333092	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	20	1	FALSE	DIPLOID	PASS
659_bTo_pair	BTBD8	1	92080305	92184725	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	28	0	FALSE	DIPLOID	PASS
659_bTo_pair	BTBD9	6	38168451	38640148	FALSE	397	-0.509151429367598	27	37213022	41687167	1	2	1	1	2	1	4474145	1	33	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	BTC	4	74744759	74794686	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	BTD	3	15601341	15647640	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	BTF3	5	73498408	73505635	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	BTF3L4	1	52056125	52090716	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	BTG1	12	92140278	92145897	TRUE	795	2.70591581692037	117	92140294	92421082	0.364342740527346	46	NA	0.364342740527346	46	NA	280788	NA	2	18	0	FALSE	AMP	PASS
659_bTo_pair	BTG2	1	203305491	203309602	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	BTG3	21	17593653	17612947	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	BTG4	11	111467526	111512354	FALSE	723	-0.542672588801529	29	108383083	111912852	NA	2	NA	NA	2	NA	3529769	NA	24	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BTK	23	101349447	101390796	FALSE	1320	1.97260294899883	102	101348659	101391051	0.364342740527346	26	NA	0.364342740527346	26	NA	42392	NA	4	26	1	FALSE	AMP	PASS
659_bTo_pair	BTLA	3	112463968	112499561	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	7	0	FALSE	GAIN	PASS
659_bTo_pair	BTN1A1	6	26501221	26510422	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	BTN2A1	6	26457904	26476621	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	BTN2A2	6	26383096	26394874	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	BTN3A1	6	26402237	26415216	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	BTN3A2	6	26365159	26378320	FALSE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	10	1	TRUE	AMP (many states)	PASS
659_bTo_pair	BTN3A3	6	26440472	26453415	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	BTNL2	6	32393963	32407128	FALSE	383	-0.968299702674037	10	32229163	32666708	0.299127672235157	0	0	0.299127672235157	0	0	437545	0	7	11	7	FALSE	HOMDEL	PASS
659_bTo_pair	BTNL3	5	180988845	181006727	FALSE	363	-0.662769973757303	22	180739384	181260807	0.291335969972972	1	0	0.291335969972972	1	0	521423	1	12	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	BTNL8	5	180899077	180950906	FALSE	363	-0.662769973757303	22	180739384	181260807	0.291335969972972	1	0	0.291335969972972	1	0	521423	1	12	13	1	FALSE	HETLOSS	PASS
659_bTo_pair	BTNL9	5	181040225	181061523	FALSE	363	-0.662769973757303	22	180739384	181260807	0.291335969972972	1	0	0.291335969972972	1	0	521423	1	12	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	BTRC	10	101354033	101557321	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	15	0	FALSE	CNLOH	PASS
659_bTo_pair	BUB1	2	110637698	110678114	FALSE	134	-0.415117895462051	39	108786846	111117811	NA	2	NA	NA	2	NA	2330965	NA	16	27	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BUB1B	15	40161023	40221136	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	24	0	FALSE	HETLOSS	PASS
659_bTo_pair	BUB1B-PAK6	15	40217428	40276396	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	17	1	FALSE	HETLOSS	PASS
659_bTo_pair	BUB3	10	123154277	123170467	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	8	1	FALSE	CNLOH	PASS
659_bTo_pair	BUD13	11	116748170	116772988	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	BUD23	7	73683025	73705161	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	19	2	FALSE	DIPLOID	PASS
659_bTo_pair	BUD31	7	99408641	99419616	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	BVES	6	105096822	105137174	FALSE	411	-0.455063723695114	34	95586870	106069771	NA	2	NA	NA	2	NA	10482901	NA	27	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BX276092.9	23	71667542	71671524	FALSE	1317	0.217996879888221	62	71533297	76176924	0.364342740527346	5	NA	0.364342740527346	5	NA	4643627	NA	35	9	0	FALSE	AMP (many states)	PASS
659_bTo_pair	BYSL	6	41921188	41933046	FALSE	399	-0.575359055127692	26	41736131	41931766	NA	2	NA	NA	2	NA	195635	NA	9	8	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	BZW1	2	200810594	200827338	FALSE	164	-0.381871160033202	39	198084145	201228955	NA	2	NA	NA	2	NA	3144810	NA	19	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	BZW2	7	16646131	16706523	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	11	0	FALSE	GAIN	PASS
659_bTo_pair	C10orf105	10	71711702	71737824	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	10	1	FALSE	CNLOH	PASS
659_bTo_pair	C10orf113	10	21125763	21146559	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	3	0	FALSE	CNLOH	PASS
659_bTo_pair	C10orf120	10	122697709	122699822	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	6	2	FALSE	CNLOH	PASS
659_bTo_pair	C10orf142	10	44292569	44294649	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	3	1	FALSE	CNLOH	PASS
659_bTo_pair	C10orf143	10	130020025	130110817	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	4	0	FALSE	CNLOH	PASS
659_bTo_pair	C10orf53	10	49679651	49710261	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	4	1	FALSE	CNLOH	PASS
659_bTo_pair	C10orf55	10	73909969	73922777	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	11	1	FALSE	CNLOH	PASS
659_bTo_pair	C10orf62	10	97589727	97590934	FALSE	664	-0.371799025630062	36	96955124	97864220	0.365165917639896	2	0	0.365165917639896	2	0	909096	2	23	3	0	FALSE	CNLOH	PASS
659_bTo_pair	C10orf67	10	23201916	23344845	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	7	0	FALSE	CNLOH	PASS
659_bTo_pair	C10orf71	10	49299193	49327487	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	16	2	FALSE	CNLOH	PASS
659_bTo_pair	C10orf82	10	116663696	116670264	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	6	1	FALSE	CNLOH	PASS
659_bTo_pair	C10orf88	10	122930903	122954403	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	10	0	FALSE	CNLOH	PASS
659_bTo_pair	C10orf90	10	126424997	126670446	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	16	1	FALSE	CNLOH	PASS
659_bTo_pair	C10orf95	10	102449837	102451543	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	4	0	FALSE	CNLOH	PASS
659_bTo_pair	C10orf99	10	84173738	84185294	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	3	0	FALSE	CNLOH	PASS
659_bTo_pair	C11orf1	11	111878935	111885975	FALSE	723	-0.542672588801529	29	108383083	111912852	NA	2	NA	NA	2	NA	3529769	NA	24	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C11orf16	11	8920076	8933006	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	C11orf21	11	2295645	2303049	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	6	2	FALSE	HETLOSS	PASS
659_bTo_pair	C11orf24	11	68261335	68272001	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	6	1	FALSE	GAIN	PASS
659_bTo_pair	C11orf40	11	4571423	4577820	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	C11orf42	11	6205566	6211132	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	C11orf45	11	128899565	128906035	FALSE	734	-0.516486951202814	27	128842412	134387591	1	2	1	1	2	1	5545179	1	27	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	C11orf49	11	46936689	47164385	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	C11orf52	11	111918032	111926872	FALSE	724	-0.507750808576719	29	111913677	112086663	NA	2	NA	NA	2	NA	172986	NA	9	4	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C11orf53	11	111245805	111286401	FALSE	723	-0.542672588801529	29	108383083	111912852	NA	2	NA	NA	2	NA	3529769	NA	24	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C11orf54	11	93741591	93764749	FALSE	715	-0.44311716102168	34	90214063	94410681	NA	2	NA	NA	2	NA	4196618	NA	16	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C11orf58	11	16613132	16756881	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	C11orf65	11	108308519	108467531	FALSE	722	1.38748084451581	87	108223106	108368901	0.364342740527346	16	NA	0.364342740527346	16	NA	145795	NA	2	53	6	TRUE	AMP	PASS
659_bTo_pair	C11orf68	11	65916808	65919117	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	5	0	FALSE	GAIN	PASS
659_bTo_pair	C11orf71	11	114391443	114400511	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	C11orf74	11	36594493	36659290	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	C11orf80	11	66744451	66843328	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	16	0	FALSE	GAIN	PASS
659_bTo_pair	C11orf86	11	66975277	66977004	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	3	0	FALSE	GAIN	PASS
659_bTo_pair	C11orf87	11	109422120	109429114	FALSE	723	-0.542672588801529	29	108383083	111912852	NA	2	NA	NA	2	NA	3529769	NA	24	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C11orf88	11	111514785	111537031	FALSE	723	-0.542672588801529	29	108383083	111912852	NA	2	NA	NA	2	NA	3529769	NA	24	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C11orf91	11	33698261	33700801	FALSE	692	-0.391103687852083	35	32583952	33774394	1	2	1	1	2	1	1190442	1	13	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	C11orf94	11	45906513	45907282	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	C11orf95	11	63759892	63768775	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	10	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	C11orf96	11	43942505	43944338	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	2	1	FALSE	DIPLOID	PASS
659_bTo_pair	C11orf97	11	94512432	94532123	FALSE	717	-0.427991611956568	34	94512673	100992623	NA	2	NA	NA	2	NA	6479950	NA	19	4	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C11orf98	11	62662816	62665217	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	C12orf10	12	53299686	53307177	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	C12orf29	12	88033846	88050160	FALSE	794	-0.258431968401282	46	85301316	91178343	0.298322295679939	3	NA	0.298322295679939	3	NA	5877027	NA	19	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	C12orf4	12	4487728	4538508	FALSE	741	-0.251609480735115	44	4489790	6567957	0.345317016959666	3	1	0.345317016959666	3	1	2078167	2	28	13	1	FALSE	GAIN	PASS
659_bTo_pair	C12orf40	12	39626167	39908300	FALSE	761	-0.518834393047475	27	38323923	40473121	1	2	1	1	2	1	2149198	1	8	24	2	FALSE	DIPLOID	PASS
659_bTo_pair	C12orf42	12	103237591	103496010	FALSE	798	-0.492720037723834	34	102839233	105367537	NA	2	NA	NA	2	NA	2528304	NA	20	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C12orf43	12	121000486	121016502	FALSE	811	1.75173703505587	98	120978522	121005021	0.364342740527346	22	NA	0.364342740527346	22	NA	26499	NA	2	14	0	TRUE	AMP	PASS
659_bTo_pair	C12orf45	12	104986310	105074197	FALSE	798	-0.492720037723834	34	102839233	105367537	NA	2	NA	NA	2	NA	2528304	NA	20	27	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C12orf49	12	116710185	116738070	FALSE	808	-0.531025796359709	27	115966146	120090026	1	2	1	1	2	1	4123880	1	23	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	C12orf50	12	87980035	88034037	FALSE	794	-0.258431968401282	46	85301316	91178343	0.298322295679939	3	NA	0.298322295679939	3	NA	5877027	NA	19	12	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	C12orf54	12	48482498	48496386	FALSE	768	-0.491963868457131	34	48045387	49018767	NA	2	NA	NA	2	NA	973380	NA	28	7	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C12orf56	12	64264762	64391192	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	C12orf57	12	6942978	6946003	FALSE	744	1.56449506938428	91	6938748	6960737	0.364342740527346	19	NA	0.364342740527346	19	NA	21989	NA	3	5	0	FALSE	AMP	PASS
659_bTo_pair	C12orf60	12	14803572	14906586	FALSE	753	-0.517160615058114	27	12726042	18242949	1	2	1	1	2	1	5516907	1	31	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	C12orf65	12	123232916	123257959	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	C12orf66	12	64186316	64222296	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	C12orf71	12	27081058	27082514	FALSE	759	-0.427669886187443	30	25503824	31088026	1	2	1	1	2	1	5584202	1	28	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	C12orf73	12	103950202	103965708	FALSE	798	-0.492720037723834	34	102839233	105367537	NA	2	NA	NA	2	NA	2528304	NA	20	2	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C12orf75	12	105235290	105396097	FALSE	798	-0.492720037723834	34	102839233	105367537	NA	2	NA	NA	2	NA	2528304	NA	20	6	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C12orf76	12	110027028	110073686	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	C13orf42	13	51082119	51200252	FALSE	836	-0.444239733377228	32	50956423	72747004	0.365165917639896	2	0	0.365165917639896	2	0	21790581	2	40	5	0	FALSE	CNLOH	PASS
659_bTo_pair	C14orf119	14	23094765	23100462	FALSE	850	-0.604709518345526	26	22902059	23302562	NA	2	NA	NA	2	NA	400503	NA	18	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C14orf132	14	96039324	96093889	FALSE	876	-0.546199181806584	27	96039535	102050530	1	2	1	1	2	1	6010995	1	30	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	C14orf177	14	98711613	98717766	FALSE	876	-0.546199181806584	27	96039535	102050530	1	2	1	1	2	1	6010995	1	30	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	C14orf178	14	77760830	77769742	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	C14orf180	14	104579684	104590515	FALSE	883	-0.69016701050987	21	103712930	104759455	0.140309795179477	0	0	0.140309795179477	0	0	1046525	0	14	5	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	C14orf28	14	44897295	44907257	FALSE	858	-0.388807455224718	39	37680254	45134449	NA	2	NA	NA	2	NA	7454195	NA	16	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C14orf39	14	60396469	60515543	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	C14orf93	14	22985908	23010166	FALSE	850	-0.604709518345526	26	22902059	23302562	NA	2	NA	NA	2	NA	400503	NA	18	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C15orf38-AP3S2	15	89834308	89912882	FALSE	925	-0.863518905667221	13	89317527	90079704	0.365165917639896	1	0	0.365165917639896	1	0	762177	1	14	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	C15orf39	15	75195643	75212169	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	C15orf40	15	82988441	83011641	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	8	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	C15orf41	15	36579611	36810248	FALSE	890	-0.864832779596883	13	34359248	37966686	0.365165917639896	1	0	0.365165917639896	1	0	3607438	1	12	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	C15orf48	15	45430529	45448761	FALSE	904	-0.666047806656427	20	44736698	49422632	0.365165917639896	1	0	0.365165917639896	1	0	4685934	1	30	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	C15orf53	15	38628005	39180499	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	C15orf61	15	67521068	67530143	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	C15orf62	15	40770080	40772449	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	C15orf65	15	55408548	55418764	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	C16orf45	16	15434295	15625028	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	27	0	FALSE	DIPLOID	PASS
659_bTo_pair	C16orf46	16	81053497	81077267	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	C16orf54	16	29742463	29746006	FALSE	965	-0.735005669796309	19	28989573	29982749	0.365165917639896	1	0	0.365165917639896	1	0	993176	1	25	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	C16orf58	16	31489471	31509309	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	C16orf70	16	67109958	67148539	FALSE	976	-0.467350965811123	34	67110264	67538977	NA	2	NA	NA	2	NA	428713	NA	24	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C16orf71	16	4734272	4749396	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	C16orf72	16	9091648	9121640	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	C16orf74	16	85690084	85751129	FALSE	987	-0.578642888038652	23	81999201	85806436	0.186356639256811	1	0	0.186356639256811	1	0	3807235	1	31	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	C16orf78	16	49373823	49399431	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	C16orf86	16	67666816	67668758	FALSE	979	-0.429457644119204	34	67645299	68698317	NA	2	NA	NA	2	NA	1053018	NA	33	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C16orf87	16	46796607	46831411	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	C16orf89	16	5044122	5066110	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	C16orf90	16	3493484	3495480	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	C16orf91	16	1419744	1420800	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	3	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	C16orf92	16	30023334	30027736	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	C16orf95	16	87083562	87317420	FALSE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	C16orf96	16	4556490	4600714	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	23	2	FALSE	DIPLOID	PASS
659_bTo_pair	C17orf100	17	6651718	6693202	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	C17orf107	17	4899418	4902932	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	C17orf113	17	42038232	42050614	FALSE	1036	-0.764029118419186	19	41624551	42193564	0.365165917639896	1	0	0.365165917639896	1	0	569013	1	25	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	C17orf47	17	58541587	58544368	FALSE	1058	-0.423419268198233	34	58422367	59890994	NA	2	NA	NA	2	NA	1468627	NA	20	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C17orf49	17	7014495	7017525	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	C17orf50	17	35760897	35765079	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	C17orf51	17	21428381	21574517	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	C17orf53	17	44141906	44162476	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C17orf58	17	67991101	67996431	FALSE	1070	-0.476939588153593	30	65635933	68457397	1	2	1	1	2	1	2821464	1	18	2	1	FALSE	DIPLOID	PASS
659_bTo_pair	C17orf64	17	60392429	60431421	FALSE	1060	-0.47151484718074	34	59953129	60500406	NA	2	NA	NA	2	NA	547277	NA	7	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C17orf67	17	56791913	56838773	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C17orf75	17	32324565	32350023	FALSE	1022	-0.670211431189836	22	32030679	35026358	0.291335969972972	1	0	0.291335969972972	1	0	2995679	1	23	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	C17orf78	17	37375986	37392708	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	C17orf80	17	73232233	73248947	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	C17orf97	17	410327	431062	FALSE	996	-0.883704003468192	13	148164	1298296	0.365165917639896	1	0	0.365165917639896	1	0	1150132	1	14	6	2	FALSE	HETLOSS	PASS
659_bTo_pair	C17orf98	17	38835088	38841455	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	3	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	C17orf99	17	78146353	78166177	FALSE	1080	-0.537824093701074	27	76741010	78870935	1	2	1	1	2	1	2129925	1	20	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	C18orf21	18	35972083	35979286	FALSE	1095	-0.699288883997088	20	33734323	36718652	0.365165917639896	1	0	0.365165917639896	1	0	2984329	1	17	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	C18orf25	18	46173553	46266991	FALSE	1100	-0.758401070483502	19	45624783	47803983	0.365165917639896	1	0	0.365165917639896	1	0	2179200	1	22	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	C18orf32	18	49477250	49487252	FALSE	1103	-0.712987700962632	19	48029643	51023578	0.365165917639896	1	0	0.365165917639896	1	0	2993935	1	20	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	C18orf54	18	54357917	54385218	FALSE	1105	-0.785555027616249	16	52752095	58670682	0.365165917639896	1	0	0.365165917639896	1	0	5918587	1	19	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	C18orf63	18	74315813	74359187	FALSE	1111	-0.872352968035647	12	63331800	74584528	0.365165917639896	1	0	0.365165917639896	1	0	11252728	1	31	16	5	FALSE	HETLOSS	PASS
659_bTo_pair	C19orf12	19	29698886	29715789	FALSE	1163	-0.446590628984043	34	23373705	29714877	NA	2	NA	NA	2	NA	6341172	NA	10	4	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C19orf18	19	57958437	57974534	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	6	0	FALSE	GAIN	PASS
659_bTo_pair	C19orf24	19	1275438	1279249	FALSE	1116	-0.668595541323287	22	1229189	1605424	0.291335969972972	1	0	0.291335969972972	1	0	376235	1	21	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	C19orf25	19	1461143	1479556	FALSE	1116	-0.668595541323287	22	1229189	1605424	0.291335969972972	1	0	0.291335969972972	1	0	376235	1	21	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	C19orf33	19	38304161	38305009	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	3	1	FALSE	HETLOSS	PASS
659_bTo_pair	C19orf38	19	10836575	10869790	FALSE	1141	-0.578703281933348	26	10514217	10929669	NA	2	NA	NA	2	NA	415452	NA	14	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C19orf44	19	16496311	16521352	FALSE	1154	-0.533888138892061	27	16361883	17271664	1	2	1	1	2	1	909781	1	23	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	C19orf47	19	40319536	40348527	FALSE	1173	-0.760690164248215	19	40322104	40807873	0.365165917639896	1	0	0.365165917639896	1	0	485769	1	21	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	C19orf48	19	50797704	50804929	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	2	1	FALSE	HETLOSS	PASS
659_bTo_pair	C19orf53	19	13774168	13778462	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	3	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	C19orf54	19	40740856	40751553	FALSE	1173	-0.760690164248215	19	40322104	40807873	0.365165917639896	1	0	0.365165917639896	1	0	485769	1	21	10	2	FALSE	HETLOSS	PASS
659_bTo_pair	C19orf57	19	13882348	13906452	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	14	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	C19orf66	19	10086122	10093252	FALSE	1136	-0.657304673205362	21	8981156	10119920	0.140309795179477	0	0	0.140309795179477	0	0	1138764	0	32	10	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	C19orf67	19	14081619	14085875	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	C19orf70	19	5678421	5680896	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	C19orf71	19	3539154	3544030	FALSE	1122	-0.653400653967241	21	3157829	4037863	0.140309795179477	0	0	0.140309795179477	0	0	880034	0	27	5	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	C19orf73	19	49118397	49119140	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	2	1	FALSE	HETLOSS	PASS
659_bTo_pair	C19orf81	19	50649445	50659310	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	C19orf84	19	51388289	51390574	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	3	1	FALSE	HETLOSS	PASS
659_bTo_pair	C1D	2	68041130	68110948	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	C1GALT1	7	7156934	7248651	FALSE	456	-0.240618790532325	45	6028682	12688782	0.279823559258657	3	0	0.279823559258657	3	0	6660100	3	32	5	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	C1GALT1C1	23	120625793	120630150	FALSE	1328	0.070674287613007	59	119603543	121049335	0.308533751035793	5	NA	0.308533751035793	5	NA	1445792	NA	34	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	C1GALT1C1L	2	43675151	43676322	FALSE	106	-0.392858868113437	39	42335725	46184779	NA	2	NA	NA	2	NA	3849054	NA	22	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C1QA	1	22636506	22639608	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	C1QB	1	22652762	22661538	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	C1QBP	17	5432777	5448830	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	10	2	FALSE	HETLOSS	PASS
659_bTo_pair	C1QC	1	22643630	22648110	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	C1QL1	17	44959693	44968071	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C1QL2	2	119156243	119158889	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	C1QL3	10	16513743	16522005	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	4	1	FALSE	CNLOH	PASS
659_bTo_pair	C1QL4	12	49332411	49337188	FALSE	770	-0.500134310902258	34	49065087	50081631	NA	2	NA	NA	2	NA	1016544	NA	25	4	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C1QTNF1	17	79022814	79049788	FALSE	1081	-0.503130193321286	34	78873805	80288187	NA	2	NA	NA	2	NA	1414382	NA	19	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C1QTNF12	1	1242446	1246722	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	9	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	C1QTNF2	5	160347751	160370641	FALSE	353	-0.698571741790457	22	157138801	161546576	0.291335969972972	1	0	0.291335969972972	1	0	4407775	1	29	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	C1QTNF3	5	34019448	34043832	FALSE	312	-0.206081392785099	47	24487677	35857105	0.365165917639896	3	1	0.365165917639896	3	1	11369428	2	27	7	0	FALSE	GAIN	PASS
659_bTo_pair	C1QTNF3-AMACR	5	33987174	34124528	FALSE	312	-0.206081392785099	47	24487677	35857105	0.365165917639896	3	1	0.365165917639896	3	1	11369428	2	27	15	1	FALSE	GAIN	PASS
659_bTo_pair	C1QTNF4	11	47589664	47594659	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	C1QTNF5	11	119338939	119340940	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	C1QTNF6	22	37180167	37199385	FALSE	1263	-0.528184158498335	29	36991204	37967644	NA	2	NA	NA	2	NA	976440	NA	31	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C1QTNF7	4	15339818	15446166	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	6	0	FALSE	GAIN	PASS
659_bTo_pair	C1QTNF8	16	1090005	1096244	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	C1QTNF9	13	24307166	24322535	FALSE	824	-0.820211361281197	14	23365275	27988570	0.365165917639896	1	0	0.365165917639896	1	0	4623295	1	32	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	C1QTNF9B	13	23890525	23902655	FALSE	824	-0.820211361281197	14	23365275	27988570	0.365165917639896	1	0	0.365165917639896	1	0	4623295	1	32	6	2	FALSE	HETLOSS	PASS
659_bTo_pair	C1R	12	7080199	7092607	FALSE	745	-0.243574834353832	44	6965649	8175835	0.345317016959666	3	1	0.345317016959666	3	1	1210186	2	26	13	2	FALSE	GAIN	PASS
659_bTo_pair	C1RL	12	7089587	7109273	FALSE	745	-0.243574834353832	44	6965649	8175835	0.345317016959666	3	1	0.345317016959666	3	1	1210186	2	26	17	0	FALSE	GAIN	PASS
659_bTo_pair	C1S	12	6988259	7071032	FALSE	745	-0.243574834353832	44	6965649	8175835	0.345317016959666	3	1	0.345317016959666	3	1	1210186	2	26	15	2	FALSE	GAIN	PASS
659_bTo_pair	C1orf100	1	244352635	244389663	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	C1orf105	1	172420688	172468831	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	C1orf109	1	37681570	37692249	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	C1orf112	1	169662007	169854080	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	54	2	FALSE	DIPLOID	PASS
659_bTo_pair	C1orf115	1	220689845	220699157	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	C1orf116	1	207018521	207032756	FALSE	71	-0.474443448890496	34	206798940	207049323	NA	2	NA	NA	2	NA	250383	NA	9	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C1orf122	1	37806979	37809454	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	C1orf123	1	53214099	53220617	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	C1orf127	1	10946471	10982037	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	C1orf131	1	231223763	231241187	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	C1orf141	1	67092165	67231853	FALSE	23	-0.326404897444941	43	65224778	71080923	0.192136715055622	3	NA	0.192136715055622	3	NA	5856145	NA	29	17	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	C1orf146	1	92217940	92245813	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	C1orf158	1	12746215	12763699	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	C1orf159	1	1081818	1116361	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	10	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	C1orf162	1	111473792	111478512	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	C1orf167	1	11761787	11789585	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	25	11	FALSE	DIPLOID	PASS
659_bTo_pair	C1orf174	1	3889125	3900293	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	C1orf185	1	51102221	51148086	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	C1orf189	1	154199372	154206333	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	C1orf194	1	109105951	109113857	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	C1orf198	1	230837119	230869589	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	C1orf21	1	184387058	184629020	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	C1orf210	1	43281883	43285617	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	C1orf216	1	35713875	35719472	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	C1orf226	1	162366908	162386818	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	C1orf35	1	228100726	228105411	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	C1orf43	1	154206696	154220637	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	C1orf50	1	42767269	42779488	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	C1orf52	1	85249953	85259672	FALSE	27	-0.365760579101575	39	77969065	85252731	NA	2	NA	NA	2	NA	7283666	NA	23	5	1	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	C1orf53	1	197902647	197907367	FALSE	60	-0.443336911293225	30	196228264	201209660	1	2	1	1	2	1	4981396	1	29	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	C1orf54	1	150268200	150280916	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	C1orf56	1	151047740	151051986	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	C1orf61	1	156404250	156430701	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	C1orf68	1	152719522	152720470	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	4	2	FALSE	DIPLOID	PASS
659_bTo_pair	C1orf74	1	209779208	209784559	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	C1orf87	1	59987269	60073770	FALSE	21	-0.414935064922519	39	59321678	64830856	NA	2	NA	NA	2	NA	5509178	NA	22	12	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C1orf94	1	34166883	34219131	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	C2	6	31897785	31945672	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	25	0	FALSE	HETLOSS	PASS
659_bTo_pair	C20orf141	20	2814987	2815833	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	C20orf144	20	33662284	33665619	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	C20orf173	20	35523186	35529652	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	C20orf194	20	3249305	3407625	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	37	5	FALSE	HETLOSS	PASS
659_bTo_pair	C20orf202	20	1203454	1208274	FALSE	1195	-0.60512265366003	23	87765	1537211	0.186356639256811	1	0	0.186356639256811	1	0	1449446	1	33	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	C20orf203	20	32631652	32673941	FALSE	1202	0.844808231617173	76	32358370	32836730	0.364342740527346	10	NA	0.364342740527346	10	NA	478360	NA	7	3	0	FALSE	AMP	PASS
659_bTo_pair	C20orf204	20	64034344	64039962	FALSE	1225	-0.32421417626258	43	63733191	64273510	0.192136715055622	3	NA	0.192136715055622	3	NA	540319	NA	22	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	C20orf27	20	3753508	3768387	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	C20orf85	20	58150904	58161150	FALSE	1221	-0.44936578355072	34	56249153	58715213	NA	2	NA	NA	2	NA	2466060	NA	27	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C20orf96	20	270863	290778	FALSE	1195	-0.60512265366003	23	87765	1537211	0.186356639256811	1	0	0.186356639256811	1	0	1449446	1	33	11	2	FALSE	HETLOSS	PASS
659_bTo_pair	C21orf58	21	46300181	46323875	FALSE	1239	-0.568555801579827	23	44960223	46664365	0.186356639256811	1	0	0.186356639256811	1	0	1704142	1	18	9	2	FALSE	HETLOSS	PASS
659_bTo_pair	C21orf62	21	32793564	32813743	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	C21orf91	21	17788967	17819386	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	C22orf15	22	23763021	23765861	FALSE	1252	-0.948790128902656	11	23317677	23779437	0.289956079954009	0	0	0.289956079954009	0	0	461760	0	9	6	0	FALSE	HOMDEL	PASS
659_bTo_pair	C22orf23	22	37943050	37953669	FALSE	1263	-0.528184158498335	29	36991204	37967644	NA	2	NA	NA	2	NA	976440	NA	31	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C22orf31	22	29058672	29061844	FALSE	1257	-0.782237459575943	16	29058831	29265673	0.365165917639896	1	0	0.365165917639896	1	0	206842	1	4	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	C22orf39	22	19351368	19448232	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	34	2	FALSE	CNLOH	PASS
659_bTo_pair	C22orf42	22	32149006	32159322	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	9	0	FALSE	CNLOH	PASS
659_bTo_pair	C22orf46	22	41688939	41698136	FALSE	1269	-0.443951758803067	34	41205309	42514754	NA	2	NA	NA	2	NA	1309445	NA	31	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C2CD2	21	41885112	41953890	FALSE	1234	-0.544212636077936	27	41740855	44141314	1	2	1	1	2	1	2400459	1	31	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	C2CD2L	11	119102198	119118544	FALSE	728	-0.487905654975058	30	118527582	119195409	1	2	1	1	2	1	667827	1	26	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	C2CD3	11	74012714	74171210	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	45	5	FALSE	GAIN	PASS
659_bTo_pair	C2CD4A	15	62066977	62070917	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	C2CD4B	15	62163535	62165283	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	C2CD4C	19	405438	409170	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	C2CD4D	1	151837819	151840557	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	C2CD5	12	22448583	22544546	FALSE	757	-0.490002350483383	34	21512373	25195063	NA	2	NA	NA	2	NA	3682690	NA	15	29	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C2CD6	2	201487425	201619178	FALSE	166	-0.425780118113581	30	201288659	203854096	1	2	1	1	2	1	2565437	1	22	31	1	FALSE	DIPLOID	PASS
659_bTo_pair	C2orf15	2	99141485	99151487	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	C2orf16	2	27537386	27582721	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	24	0	FALSE	DIPLOID	PASS
659_bTo_pair	C2orf40	2	106063246	106078159	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	C2orf42	2	70149880	70248615	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	25	0	FALSE	DIPLOID	PASS
659_bTo_pair	C2orf49	2	105337359	105349211	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	C2orf50	2	11133053	11146790	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	C2orf66	2	196805002	196810276	FALSE	161	-0.46057869782823	30	190057617	197310624	1	2	1	1	2	1	7253007	1	23	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	C2orf68	2	85606654	85612066	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	C2orf69	2	199911256	199955935	FALSE	164	-0.381871160033202	39	198084145	201228955	NA	2	NA	NA	2	NA	3144810	NA	19	15	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C2orf70	2	26562582	26579532	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	C2orf72	2	231037490	231049719	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	C2orf73	2	54330034	54383742	FALSE	110	-0.435434252584523	30	48441014	54599245	1	2	1	1	2	1	6158231	1	18	6	2	FALSE	DIPLOID	PASS
659_bTo_pair	C2orf74	2	61145068	61164829	FALSE	118	-0.436789875977301	34	60942397	61470693	NA	2	NA	NA	2	NA	528296	NA	5	4	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C2orf76	2	119302225	119366828	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	C2orf78	2	73784189	73817147	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	C2orf80	2	208165343	208190073	FALSE	168	-0.499602545595775	30	203936898	208231285	1	2	1	1	2	1	4294387	1	25	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	C2orf81	2	74414176	74421591	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C2orf83	2	227610090	227648606	FALSE	186	-0.695736902539597	22	226867246	227993567	0.291335969972972	1	0	0.291335969972972	1	0	1126321	1	19	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	C2orf88	2	189879609	190203484	FALSE	160	0.966258345616877	78	189775687	190057466	0.364342740527346	11	NA	0.364342740527346	11	NA	281779	NA	4	8	0	TRUE	AMP	PASS
659_bTo_pair	C2orf91	2	41935368	41956806	FALSE	104	-0.491151156674762	34	39178660	42057603	NA	2	NA	NA	2	NA	2878943	NA	7	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C2orf92	2	97664217	97703064	FALSE	129	-0.0788460339292772	54	97162194	97739861	0.311828977193897	4	2	0.311828977193897	4	2	577667	2	6	8	2	FALSE	TETRAPLOID	PASS
659_bTo_pair	C3	19	6677704	6730562	FALSE	1128	-0.566723388755247	23	6665178	7083719	0.186356639256811	1	0	0.186356639256811	1	0	418541	1	13	43	5	FALSE	HETLOSS	PASS
659_bTo_pair	C3AR1	12	8058302	8066471	FALSE	745	-0.243574834353832	44	6965649	8175835	0.345317016959666	3	1	0.345317016959666	3	1	1210186	2	26	6	0	FALSE	GAIN	PASS
659_bTo_pair	C3orf14	3	62318973	62336213	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	C3orf18	3	50558025	50571027	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	C3orf20	3	14675099	14773034	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	20	1	FALSE	HETLOSS	PASS
659_bTo_pair	C3orf22	3	126526999	126558965	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	9	4	FALSE	GAIN	PASS
659_bTo_pair	C3orf30	3	119146150	119160042	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	8	1	FALSE	GAIN	PASS
659_bTo_pair	C3orf33	3	155762617	155806351	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	6	0	FALSE	GAIN	PASS
659_bTo_pair	C3orf38	3	88149743	88168729	FALSE	232	-0.785224171872638	14	72888305	88156485	0.365165917639896	1	0	0.365165917639896	1	0	15268180	1	18	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	C3orf49	3	63819362	63848636	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	C3orf52	3	112086335	112131004	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	13	1	FALSE	GAIN	PASS
659_bTo_pair	C3orf56	3	127193131	127198185	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	3	0	FALSE	GAIN	PASS
659_bTo_pair	C3orf58	3	143971798	144048719	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	8	0	FALSE	GAIN	PASS
659_bTo_pair	C3orf62	3	49268602	49277909	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	C3orf67	3	58717365	59050084	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	19	1	FALSE	HETLOSS	PASS
659_bTo_pair	C3orf70	3	185078050	185153014	FALSE	259	-0.260370931250901	44	183654025	185254015	0.345317016959666	3	1	0.345317016959666	3	1	1599990	2	31	5	0	FALSE	GAIN	PASS
659_bTo_pair	C3orf80	3	160225496	160228213	FALSE	250	-0.231905273142314	46	156829339	161250770	0.298322295679939	3	NA	0.298322295679939	3	NA	4421431	NA	26	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	C3orf84	3	49177632	49191858	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	C3orf85	3	109118252	109150514	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	3	0	FALSE	GAIN	PASS
659_bTo_pair	C4A	6	31982024	32002681	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	11	4	FALSE	HETLOSS	PASS
659_bTo_pair	C4B	6	32014795	32035418	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	C4BPA	1	207104262	207144972	FALSE	72	-0.634345269299765	26	207049716	207511604	NA	2	NA	NA	2	NA	461888	NA	7	11	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C4BPB	1	207088842	207099993	FALSE	72	-0.634345269299765	26	207049716	207511604	NA	2	NA	NA	2	NA	461888	NA	7	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C4orf17	4	99511004	99542303	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	C4orf19	4	37453941	37623495	FALSE	278	-0.217595572850614	44	20704713	38137253	0.345317016959666	3	1	0.345317016959666	3	1	17432540	2	29	5	1	FALSE	GAIN	PASS
659_bTo_pair	C4orf3	4	119296419	119304445	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	C4orf33	4	129093317	129116640	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	C4orf36	4	86876205	86892422	FALSE	291	-0.458701040497953	34	83536708	87613131	NA	2	NA	NA	2	NA	4076423	NA	17	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C4orf45	4	158893134	159038760	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	C4orf46	4	158666679	158672255	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	C4orf47	4	185426249	185449826	FALSE	305	-0.853036814117495	12	184629284	186555336	0.365165917639896	1	0	0.365165917639896	1	0	1926052	1	22	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	C4orf48	4	2041993	2043970	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	4	0	FALSE	GAIN	PASS
659_bTo_pair	C4orf50	4	5897373	6200555	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	28	2	FALSE	GAIN	PASS
659_bTo_pair	C4orf51	4	145680115	145771032	FALSE	300	-0.423460920061428	34	143186078	151174790	NA	2	NA	NA	2	NA	7988712	NA	32	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C4orf54	4	99636529	99654648	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	C5	9	120952335	121050276	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	41	0	FALSE	DIPLOID	PASS
659_bTo_pair	C5AR1	19	47290023	47322066	FALSE	1187	-0.64296711085636	26	47021158	48297657	NA	2	NA	NA	2	NA	1276499	NA	31	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C5AR2	19	47332147	47347327	FALSE	1187	-0.64296711085636	26	47021158	48297657	NA	2	NA	NA	2	NA	1276499	NA	31	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C5orf15	5	133955502	133968787	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	C5orf22	5	31532266	31555058	FALSE	312	-0.206081392785099	47	24487677	35857105	0.365165917639896	3	1	0.365165917639896	3	1	11369428	2	27	10	0	FALSE	GAIN	PASS
659_bTo_pair	C5orf24	5	134845680	134859737	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	C5orf30	5	103258702	103278660	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	C5orf34	5	43486701	43515145	FALSE	316	-0.143574193475256	49	39021030	43704252	0.365165917639896	3	1	0.365165917639896	3	1	4683222	2	28	15	2	FALSE	GAIN	PASS
659_bTo_pair	C5orf38	5	2752131	2755397	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	4	0	FALSE	GAIN	PASS
659_bTo_pair	C5orf46	5	147880726	147906538	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	5	2	FALSE	HETLOSS	PASS
659_bTo_pair	C5orf47	5	173973779	174006140	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	C5orf49	5	7830378	7851490	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	3	1	FALSE	GAIN	PASS
659_bTo_pair	C5orf51	5	41904188	41921636	FALSE	316	-0.143574193475256	49	39021030	43704252	0.365165917639896	3	1	0.365165917639896	3	1	4683222	2	28	7	0	FALSE	GAIN	PASS
659_bTo_pair	C5orf52	5	157671553	157680143	FALSE	353	-0.698571741790457	22	157138801	161546576	0.291335969972972	1	0	0.291335969972972	1	0	4407775	1	29	3	1	FALSE	HETLOSS	PASS
659_bTo_pair	C5orf58	5	170232447	170252575	FALSE	356	-0.773912908266316	17	162095550	171298806	0.365165917639896	1	0	0.365165917639896	1	0	9203256	1	21	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	C5orf60	5	179641544	179645046	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	6	2	FALSE	HETLOSS	PASS
659_bTo_pair	C5orf63	5	127042558	127073492	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	C5orf67	5	56511567	56606232	FALSE	319	-0.764156631411702	19	50399919	56556187	0.365165917639896	1	0	0.365165917639896	1	0	6156268	1	28	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	C6	5	41142234	41261438	FALSE	316	-0.143574193475256	49	39021030	43704252	0.365165917639896	3	1	0.365165917639896	3	1	4683222	2	28	20	0	FALSE	GAIN	PASS
659_bTo_pair	C6orf10	6	32288526	32371912	FALSE	383	-0.968299702674037	10	32229163	32666708	0.299127672235157	0	0	0.299127672235157	0	0	437545	0	7	30	9	FALSE	HOMDEL	PASS
659_bTo_pair	C6orf106	6	34587288	34696859	FALSE	391	-0.499783837646083	34	33391964	35241176	NA	2	NA	NA	2	NA	1849212	NA	26	7	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C6orf118	6	165279664	165309607	FALSE	447	-0.721809212356928	19	165280135	167033904	0.365165917639896	1	0	0.365165917639896	1	0	1753769	1	11	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	C6orf120	6	169702190	169704856	FALSE	449	-0.520973998932362	27	167374374	170584540	1	2	1	1	2	1	3210166	1	18	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	C6orf132	6	42101118	42142619	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	C6orf136	6	30647039	30653210	FALSE	379	-0.524744136561063	27	30546321	31270541	1	2	1	1	2	1	724220	1	30	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	C6orf141	6	49550646	49561907	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	C6orf15	6	31111223	31112559	FALSE	379	-0.524744136561063	27	30546321	31270541	1	2	1	1	2	1	724220	1	30	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	C6orf163	6	87344849	87365463	FALSE	407	-0.739487270214454	18	87337082	88963417	0.180216333675297	0	0	0.180216333675297	0	0	1626335	0	11	6	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	C6orf201	6	4079206	4130951	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	C6orf203	6	107028213	107051342	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	C6orf222	6	36315757	36336885	FALSE	393	-0.47521086997284	30	35476361	36677919	1	2	1	1	2	1	1201558	1	21	14	2	FALSE	DIPLOID	PASS
659_bTo_pair	C6orf223	6	44000580	44005958	FALSE	402	0.621925940985699	71	43770931	44003090	0.364342740527346	8	NA	0.364342740527346	8	NA	232159	NA	2	5	2	FALSE	INDETERMINATE	PASS
659_bTo_pair	C6orf226	6	42890265	42890816	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	C6orf47	6	31658298	31660772	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	C6orf48	6	31834608	31839766	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	C6orf52	6	10671418	10694797	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	C6orf58	6	127519455	127591817	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	C6orf62	6	24704861	24720836	FALSE	373	-0.695027086668472	22	24174718	26017145	0.291335969972972	1	0	0.291335969972972	1	0	1842427	1	23	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	C6orf89	6	36871870	36928964	FALSE	395	-0.486049210799182	34	36704239	37028105	NA	2	NA	NA	2	NA	323866	NA	7	9	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C7	5	40909252	40982939	FALSE	316	-0.143574193475256	49	39021030	43704252	0.365165917639896	3	1	0.365165917639896	3	1	4683222	2	28	18	4	FALSE	GAIN	PASS
659_bTo_pair	C7orf25	7	42908726	42912305	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	7	0	FALSE	GAIN	PASS
659_bTo_pair	C7orf26	7	6590017	6608726	FALSE	456	-0.240618790532325	45	6028682	12688782	0.279823559258657	3	0	0.279823559258657	3	0	6660100	3	32	10	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	C7orf31	7	25134697	25180356	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	12	2	FALSE	GAIN	PASS
659_bTo_pair	C7orf33	7	148590565	148615860	FALSE	504	-0.812834819860627	15	143573123	148800568	0.21938209893867	0	0	0.21938209893867	0	0	5227445	0	25	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	C7orf43	7	100154420	100158715	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	C7orf50	7	996986	1138260	FALSE	450	-0.329551508654045	40	193185	2379492	0.308149309490068	3	1	0.308149309490068	3	1	2186307	2	26	16	0	FALSE	GAIN	PASS
659_bTo_pair	C7orf55-LUC7L2	7	139341360	139422599	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	C7orf57	7	48035511	48061304	FALSE	464	-0.323591849229323	42	45157835	48245556	0.189552622934988	3	0	0.189552622934988	3	0	3087721	3	12	8	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	C7orf61	7	100456615	100464271	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	C7orf77	7	124777292	124790810	FALSE	490	-0.576498321273708	26	116888215	124790543	NA	2	NA	NA	2	NA	7902328	NA	33	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C8A	1	56854806	56918221	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	C8B	1	56929210	56966140	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	C8G	9	136945185	136946975	FALSE	632	0.0629388935581104	59	136886484	136946542	0.308533751035793	5	NA	0.308533751035793	5	NA	60058	NA	3	6	1	TRUE	AMP (many states)	PASS
659_bTo_pair	C8orf33	8	145052378	145066685	FALSE	569	-0.29739638799535	43	144518163	145054121	0.192136715055622	3	NA	0.192136715055622	3	NA	535958	NA	13	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	C8orf34	8	68330722	68819022	FALSE	552	2.7443125862467	117	68231501	68331064	0.364342740527346	47	NA	0.364342740527346	47	NA	99563	NA	2	15	1	TRUE	AMP	PASS
659_bTo_pair	C8orf37	8	95244919	95269201	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	6	1	FALSE	GAIN	PASS
659_bTo_pair	C8orf44	8	66667615	66685564	FALSE	550	-0.186881774239562	48	60208949	67746087	0.365165917639896	3	NA	0.365165917639896	3	NA	7537138	NA	33	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	C8orf48	8	13566843	13568287	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	C8orf58	8	22599601	22604150	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	C8orf59	8	85214076	85220421	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	3	0	FALSE	GAIN	PASS
659_bTo_pair	C8orf74	8	10672637	10700593	FALSE	516	-0.746159577374248	19	10611830	11564127	0.365165917639896	1	0	0.365165917639896	1	0	952297	1	9	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	C8orf76	8	123219957	123241398	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	7	0	FALSE	GAIN	PASS
659_bTo_pair	C8orf82	8	144525733	144529132	FALSE	569	-0.29739638799535	43	144518163	145054121	0.192136715055622	3	NA	0.192136715055622	3	NA	535958	NA	13	5	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	C8orf86	8	38510834	38560939	FALSE	536	-0.812766686991614	14	38512585	41896345	0.365165917639896	1	0	0.365165917639896	1	0	3383760	1	19	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	C8orf88	8	90958637	90985257	FALSE	557	-0.436164323203642	34	90006291	91395139	NA	2	NA	NA	2	NA	1388848	NA	9	5	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C8orf89	8	73241329	73259502	FALSE	553	-0.248188717260806	46	68331252	73878866	0.298322295679939	3	NA	0.298322295679939	3	NA	5547614	NA	20	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	C9	5	39284262	39424868	FALSE	316	-0.143574193475256	49	39021030	43704252	0.365165917639896	3	1	0.365165917639896	3	1	4683222	2	28	31	5	FALSE	GAIN	PASS
659_bTo_pair	C9orf116	9	135495181	135501734	FALSE	629	-0.955558414525678	9	134750808	136485014	0.291955377254426	0	0	0.291955377254426	0	0	1734206	0	30	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	C9orf129	9	93318199	93346414	FALSE	606	-0.547644280946133	27	91214370	95094057	1	2	1	1	2	1	3879687	1	31	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	C9orf131	9	35041095	35045991	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	14	2	FALSE	CNLOH	PASS
659_bTo_pair	C9orf135	9	69820793	69906232	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	C9orf152	9	110190048	110208189	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	C9orf153	9	86220265	86259657	FALSE	604	-0.547885090101936	27	85547201	90613824	1	2	1	1	2	1	5066623	1	21	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	C9orf16	9	128160260	128163928	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	C9orf24	9	34379019	34397832	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	8	1	FALSE	CNLOH	PASS
659_bTo_pair	C9orf3	9	94726701	95087218	FALSE	606	-0.547644280946133	27	91214370	95094057	1	2	1	1	2	1	3879687	1	31	19	2	FALSE	DIPLOID	PASS
659_bTo_pair	C9orf40	9	74946581	74952886	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	C9orf43	9	113410054	113429684	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	C9orf50	9	129612225	129620776	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	C9orf57	9	72051376	72072721	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	C9orf64	9	83938311	83956986	FALSE	598	-0.546497547865564	29	78236395	83956411	NA	2	NA	NA	2	NA	5720016	NA	14	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	C9orf66	9	212824	215893	FALSE	570	-0.801602085682206	16	14889	1057241	0.365165917639896	1	0	0.365165917639896	1	0	1042352	1	9	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	C9orf72	9	27546545	27573866	FALSE	585	-0.464842894155678	32	22447079	32572950	0.365165917639896	2	0	0.365165917639896	2	0	10125871	2	19	12	0	FALSE	CNLOH	PASS
659_bTo_pair	C9orf78	9	129827290	129835863	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	C9orf84	9	111686173	111795008	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	31	0	FALSE	DIPLOID	PASS
659_bTo_pair	C9orf85	9	71911510	71986054	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	C9orf92	9	16203935	16410990	FALSE	581	-0.746183084602222	19	10618009	19786745	0.365165917639896	1	0	0.365165917639896	1	0	9168736	1	24	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	CA1	8	85327608	85379014	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	7	0	FALSE	GAIN	PASS
659_bTo_pair	CA10	17	51630313	52160017	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	9	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CA11	19	48637942	48646312	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	CA12	15	63321378	63382161	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	CA13	8	85220587	85284073	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	7	0	FALSE	GAIN	PASS
659_bTo_pair	CA14	1	150257159	150265078	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	CA2	8	85463852	85481493	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	7	0	FALSE	GAIN	PASS
659_bTo_pair	CA3	8	85373436	85449040	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	7	0	FALSE	GAIN	PASS
659_bTo_pair	CA4	17	60149936	60170899	FALSE	1060	-0.47151484718074	34	59953129	60500406	NA	2	NA	NA	2	NA	547277	NA	7	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CA5A	16	87881546	87936580	FALSE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	CA5B	23	15688830	15788409	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	7	0	TRUE	AMP	suppress_segment_too_large
659_bTo_pair	CA6	1	8945867	8975092	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	10	2	FALSE	DIPLOID	PASS
659_bTo_pair	CA7	16	66844379	66854153	FALSE	973	-0.642771892390385	26	64948130	66912568	NA	2	NA	NA	2	NA	1964438	NA	17	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CA8	8	60187347	60281412	FALSE	550	-0.186881774239562	48	60208949	67746087	0.365165917639896	3	NA	0.365165917639896	3	NA	7537138	NA	33	9	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	CA9	9	35673856	35681159	FALSE	590	0.518634267342274	67	35107891	35683151	0.364342740527346	7	2	0.364342740527346	7	2	575260	5	11	12	3	FALSE	AMP	PASS
659_bTo_pair	CAAP1	9	26840685	26892804	FALSE	585	-0.464842894155678	32	22447079	32572950	0.365165917639896	2	0	0.365165917639896	2	0	10125871	2	19	8	0	FALSE	CNLOH	PASS
659_bTo_pair	CAB39	2	230712845	230821075	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	CAB39L	13	49308650	49444126	FALSE	835	-0.766581964775609	19	48490223	50953919	0.365165917639896	1	0	0.365165917639896	1	0	2463696	1	18	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	CABCOCO1	10	61662961	61766766	FALSE	644	-0.637578894715957	26	60871631	61765979	NA	2	NA	NA	2	NA	894348	NA	3	6	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CABIN1	22	24011192	24178628	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	42	0	FALSE	CNLOH	PASS
659_bTo_pair	CABLES1	18	23134564	23260467	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	14	0	FALSE	GAIN	PASS
659_bTo_pair	CABLES2	20	62388632	62407285	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	CABP1	12	120640552	120667324	FALSE	810	-0.438737881374958	34	120127967	120903912	NA	2	NA	NA	2	NA	775945	NA	20	10	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CABP2	11	67518912	67524517	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	7	1	FALSE	GAIN	PASS
659_bTo_pair	CABP4	11	67452406	67460313	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	9	1	FALSE	GAIN	PASS
659_bTo_pair	CABP5	19	48029953	48044053	FALSE	1187	-0.64296711085636	26	47021158	48297657	NA	2	NA	NA	2	NA	1276499	NA	31	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CABP7	22	29720084	29731839	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	6	0	FALSE	CNLOH	PASS
659_bTo_pair	CABS1	4	70334966	70337116	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	CABYR	18	24138956	24161603	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	12	1	FALSE	GAIN	PASS
659_bTo_pair	CACFD1	9	133459965	133470848	FALSE	627	-0.867007674319489	12	132986776	134157867	0.365165917639896	1	0	0.365165917639896	1	0	1171091	1	28	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	CACHD1	1	64470792	64693058	FALSE	21	-0.414935064922519	39	59321678	64830856	NA	2	NA	NA	2	NA	5509178	NA	22	27	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CACNA1A	19	13206442	13633025	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	60	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	CACNA1B	9	137877789	138124624	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	55	5	FALSE	HETLOSS	PASS
659_bTo_pair	CACNA1C	12	1970786	2697950	FALSE	739	-0.369471841682825	39	1104785	3873202	NA	2	NA	NA	2	NA	2768417	NA	20	62	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CACNA1D	3	53328963	53813733	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	59	1	FALSE	HETLOSS	PASS
659_bTo_pair	CACNA1E	1	181317690	181808084	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	54	2	FALSE	DIPLOID	PASS
659_bTo_pair	CACNA1F	23	49205063	49233371	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	52	1	FALSE	AMP (many states)	PASS
659_bTo_pair	CACNA1G	17	50561068	50627474	FALSE	1053	-0.561829441831031	26	49646906	50626743	NA	2	NA	NA	2	NA	979837	NA	25	49	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CACNA1H	16	1153121	1221772	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	47	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CACNA1I	22	39570753	39689737	FALSE	1267	-0.448885551917151	34	39313004	41087696	NA	2	NA	NA	2	NA	1774692	NA	24	47	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CACNA1S	1	201039512	201112566	FALSE	60	-0.443336911293225	30	196228264	201209660	1	2	1	1	2	1	4981396	1	29	46	4	FALSE	DIPLOID	PASS
659_bTo_pair	CACNA2D1	7	81946444	82443798	FALSE	475	-0.558789392330973	26	81950430	85121864	NA	2	NA	NA	2	NA	3171434	NA	5	40	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CACNA2D2	3	50362799	50504244	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	36	0	FALSE	HETLOSS	PASS
659_bTo_pair	CACNA2D3	3	54122547	55074557	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	44	4	FALSE	HETLOSS	PASS
659_bTo_pair	CACNA2D4	12	1791957	1918836	FALSE	739	-0.369471841682825	39	1104785	3873202	NA	2	NA	NA	2	NA	2768417	NA	20	44	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CACNB1	17	39173456	39197703	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	17	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CACNB2	10	18140677	18543557	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	22	1	FALSE	CNLOH	PASS
659_bTo_pair	CACNB3	12	48813794	48828941	FALSE	768	-0.491963868457131	34	48045387	49018767	NA	2	NA	NA	2	NA	973380	NA	28	16	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CACNB4	2	151832768	152099475	FALSE	149	-0.454179855872301	30	147845197	157628657	1	2	1	1	2	1	9783460	1	30	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	CACNG1	17	67044590	67056797	FALSE	1070	-0.476939588153593	30	65635933	68457397	1	2	1	1	2	1	2821464	1	18	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	CACNG2	22	36563921	36703558	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	6	0	FALSE	CNLOH	PASS
659_bTo_pair	CACNG3	16	24255553	24362801	FALSE	960	-0.449512584299377	34	23658521	27234165	NA	2	NA	NA	2	NA	3575644	NA	16	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CACNG4	17	66964910	67033398	FALSE	1070	-0.476939588153593	30	65635933	68457397	1	2	1	1	2	1	2821464	1	18	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	CACNG5	17	66835117	66885486	FALSE	1070	-0.476939588153593	30	65635933	68457397	1	2	1	1	2	1	2821464	1	18	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	CACNG6	19	53992288	54012669	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CACNG7	19	53909335	53943941	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CACNG8	19	53963040	53990215	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	CACTIN	19	3610641	3626815	FALSE	1122	-0.653400653967241	21	3157829	4037863	0.140309795179477	0	0	0.140309795179477	0	0	880034	0	27	15	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CACUL1	10	118674167	118755249	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	10	0	FALSE	CNLOH	PASS
659_bTo_pair	CACYBP	1	174999163	175011715	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	CAD	2	27217390	27243943	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	48	1	FALSE	DIPLOID	PASS
659_bTo_pair	CADM1	11	115169218	115504957	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	CADM2	3	84958981	86074429	FALSE	232	-0.785224171872638	14	72888305	88156485	0.365165917639896	1	0	0.365165917639896	1	0	15268180	1	18	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	CADM3	1	159171609	159203313	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	CADM4	19	43622368	43639839	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	CADPS	3	62398346	62875389	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	33	0	FALSE	HETLOSS	PASS
659_bTo_pair	CADPS2	7	122318425	122886759	FALSE	490	-0.576498321273708	26	116888215	124790543	NA	2	NA	NA	2	NA	7902328	NA	33	44	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CAGE1	6	7326656	7389743	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	CALB1	8	90058608	90095475	FALSE	557	-0.436164323203642	34	90006291	91395139	NA	2	NA	NA	2	NA	1388848	NA	9	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CALB2	16	71358713	71390438	FALSE	983	-0.428709389755029	30	71178941	72171154	1	2	1	1	2	1	992213	1	22	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	CALCA	11	14966668	14972354	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	CALCB	11	14904997	15082342	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	CALCOCO1	12	53708517	53727745	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	CALCOCO2	17	48830988	48866522	FALSE	1051	-0.636429062465303	26	48785033	49576193	NA	2	NA	NA	2	NA	791160	NA	15	14	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CALCR	7	93424487	93574730	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	14	1	FALSE	HETLOSS	PASS
659_bTo_pair	CALCRL	2	187343129	187448460	FALSE	159	-0.50094907723407	34	185815441	189771912	NA	2	NA	NA	2	NA	3956471	NA	17	12	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CALD1	7	134744252	134970728	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	CALHM1	10	103453387	103458888	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	5	0	FALSE	CNLOH	PASS
659_bTo_pair	CALHM2	10	103446786	103452402	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	5	0	FALSE	CNLOH	PASS
659_bTo_pair	CALHM3	10	103472804	103479240	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	7	0	FALSE	CNLOH	PASS
659_bTo_pair	CALHM4	6	116529013	116558868	FALSE	417	-0.520434008170675	29	114058103	117272433	NA	2	NA	NA	2	NA	3214330	NA	20	7	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CALHM5	6	116511646	116524792	FALSE	417	-0.520434008170675	29	114058103	117272433	NA	2	NA	NA	2	NA	3214330	NA	20	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CALHM6	6	116461370	116463779	FALSE	417	-0.520434008170675	29	114058103	117272433	NA	2	NA	NA	2	NA	3214330	NA	20	5	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CALM1	14	90396502	90408261	FALSE	870	-0.471399657488227	30	81180359	92000019	1	2	1	1	2	1	10819660	1	29	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CALM2	2	47160082	47176601	FALSE	108	-0.751130758275331	19	46479657	47176488	0.365165917639896	1	0	0.365165917639896	1	0	696831	1	11	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	CALM3	19	46601074	46610793	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CALML3	10	5524009	5526771	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	2	0	FALSE	CNLOH	PASS
659_bTo_pair	CALML4	15	68190705	68206110	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	CALML5	10	5498697	5499555	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	2	1	FALSE	CNLOH	PASS
659_bTo_pair	CALML6	1	1914827	1917296	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CALN1	7	71779491	72447151	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CALR	19	12938578	12944489	FALSE	1146	1.55800083780346	91	12938710	12944448	0.364342740527346	19	NA	0.364342740527346	19	NA	5738	NA	1	11	0	FALSE	AMP	PASS
659_bTo_pair	CALR3	19	16479057	16496192	FALSE	1154	-0.533888138892061	27	16361883	17271664	1	2	1	1	2	1	909781	1	23	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	CALU	7	128739292	128771807	FALSE	492	-0.463656181520944	30	126439208	129166764	1	2	1	1	2	1	2727556	1	27	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	CALY	10	133324072	133336935	FALSE	676	-0.612597388333807	25	132187132	133626712	0.365165917639896	1	0	0.365165917639896	1	0	1439580	1	27	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	CAMK1	3	9757342	9769992	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	CAMK1D	10	12349482	12835545	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	11	0	FALSE	CNLOH	PASS
659_bTo_pair	CAMK1G	1	209583717	209613938	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	CAMK2A	5	150219491	150290291	FALSE	348	-0.944402178600545	11	150166869	150399003	0.289956079954009	0	0	0.289956079954009	0	0	232134	0	5	20	1	FALSE	HOMDEL	PASS
659_bTo_pair	CAMK2B	7	44217150	44334577	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	24	1	FALSE	GAIN	PASS
659_bTo_pair	CAMK2D	4	113451032	113761927	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	25	0	FALSE	DIPLOID	PASS
659_bTo_pair	CAMK2G	10	73812501	73874591	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	24	0	FALSE	CNLOH	PASS
659_bTo_pair	CAMK2N1	1	20482391	20486220	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	CAMK2N2	3	184259213	184261463	FALSE	259	-0.260370931250901	44	183654025	185254015	0.345317016959666	3	1	0.345317016959666	3	1	1599990	2	31	3	1	FALSE	GAIN	PASS
659_bTo_pair	CAMK4	5	111223653	111494886	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	CAMKK1	17	3860315	3894891	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	18	1	FALSE	HETLOSS	PASS
659_bTo_pair	CAMKK2	12	121237691	121298308	FALSE	812	-0.468438273619664	34	121006302	121793667	NA	2	NA	NA	2	NA	787365	NA	12	20	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CAMKMT	2	44361950	44772592	FALSE	106	-0.392858868113437	39	42335725	46184779	NA	2	NA	NA	2	NA	3849054	NA	22	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CAMKV	3	49857988	49870222	FALSE	220	-0.761977046834943	19	49697158	49862323	0.365165917639896	1	0	0.365165917639896	1	0	165165	1	9	12	2	FALSE	HETLOSS	PASS
659_bTo_pair	CAMLG	5	134738501	134752160	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	CAMP	3	48223347	48225491	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	CAMSAP1	9	135808487	135907228	FALSE	629	-0.955558414525678	9	134750808	136485014	0.291955377254426	0	0	0.291955377254426	0	0	1734206	0	30	28	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CAMSAP2	1	200739558	200860704	FALSE	60	-0.443336911293225	30	196228264	201209660	1	2	1	1	2	1	4981396	1	29	29	1	FALSE	DIPLOID	PASS
659_bTo_pair	CAMSAP3	19	7595902	7618304	FALSE	1130	-0.690953718254595	21	7440128	7870576	0.140309795179477	0	0	0.140309795179477	0	0	430448	0	25	25	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CAMTA1	1	6785324	7769706	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	38	2	FALSE	DIPLOID	PASS
659_bTo_pair	CAMTA2	17	4967992	4987652	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	28	1	FALSE	HETLOSS	PASS
659_bTo_pair	CAND1	12	67269281	67319951	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	23	0	FALSE	DIPLOID	PASS
659_bTo_pair	CAND2	3	12796472	12871916	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	25	4	FALSE	HETLOSS	PASS
659_bTo_pair	CANT1	17	78991717	79009867	FALSE	1081	-0.503130193321286	34	78873805	80288187	NA	2	NA	NA	2	NA	1414382	NA	19	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CANX	5	179678628	179730925	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	18	1	FALSE	HETLOSS	PASS
659_bTo_pair	CAP1	1	40040233	40072649	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	CAP2	6	17393216	17557792	FALSE	370	-0.377368469329801	39	15246548	20212233	NA	2	NA	NA	2	NA	4965685	NA	18	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CAPG	2	85394748	85418432	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	CAPN1	11	65180566	65212006	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	22	1	FALSE	GAIN	PASS
659_bTo_pair	CAPN10	2	240586716	240617705	FALSE	194	-0.588828356865968	23	240025214	241817025	0.186356639256811	1	0	0.186356639256811	1	0	1791811	1	34	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	CAPN11	6	44158811	44184402	FALSE	403	-0.460377194073257	34	44113878	44253574	NA	2	NA	NA	2	NA	139696	NA	6	23	4	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CAPN12	19	38730187	38769904	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	20	5	FALSE	HETLOSS	PASS
659_bTo_pair	CAPN13	2	30722771	30820542	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	22	2	FALSE	DIPLOID	PASS
659_bTo_pair	CAPN14	2	31173056	31233858	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	22	7	FALSE	DIPLOID	PASS
659_bTo_pair	CAPN15	16	527717	554636	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	19	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CAPN2	1	223701593	223776018	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	22	4	FALSE	DIPLOID	PASS
659_bTo_pair	CAPN3	15	42359500	42412318	FALSE	898	-0.892191685906218	12	42081573	42681446	0.365165917639896	1	0	0.365165917639896	1	0	599873	1	13	26	1	FALSE	HETLOSS	PASS
659_bTo_pair	CAPN5	11	77066941	77126155	FALSE	710	-0.314972965919996	43	76659622	77285059	0.192136715055622	3	NA	0.192136715055622	3	NA	625437	NA	8	16	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	CAPN6	23	111245103	111270523	FALSE	1326	0.081501992784242	59	111246621	119452040	0.308533751035793	5	NA	0.308533751035793	5	NA	8205419	NA	28	14	0	FALSE	AMP (many states)	PASS
659_bTo_pair	CAPN7	3	15206152	15252918	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	CAPN8	1	223538007	223665734	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	18	5	FALSE	DIPLOID	PASS
659_bTo_pair	CAPN9	1	230747384	230802003	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	21	1	FALSE	HETLOSS	PASS
659_bTo_pair	CAPNS1	19	36139575	36150353	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	CAPNS2	16	55566672	55567687	FALSE	968	-0.505434692233225	30	51151209	56683230	1	2	1	1	2	1	5532021	1	34	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	CAPRIN1	11	34051683	34101156	FALSE	693	1.48557718285554	90	33858770	34071918	0.364342740527346	18	NA	0.364342740527346	18	NA	213148	NA	2	18	0	TRUE	AMP	PASS
659_bTo_pair	CAPRIN2	12	30709552	30754951	FALSE	759	-0.427669886187443	30	25503824	31088026	1	2	1	1	2	1	5584202	1	28	23	2	FALSE	DIPLOID	PASS
659_bTo_pair	CAPS	19	5911707	5915877	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	CAPS2	12	75275979	75390928	FALSE	792	-0.349776929755415	43	71610399	76348235	0.192136715055622	3	NA	0.192136715055622	3	NA	4737836	NA	18	27	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CAPSL	5	35904295	35938779	FALSE	314	-0.173277106490387	51	35904615	38924434	0.365165917639896	3	NA	0.365165917639896	3	NA	3019819	NA	16	5	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	CAPZA1	1	112619173	112671619	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	CAPZA2	7	116811070	116922049	FALSE	489	1.80235910461994	98	116667253	116862597	0.364342740527346	23	NA	0.364342740527346	23	NA	195344	NA	2	10	0	TRUE	AMP	PASS
659_bTo_pair	CAPZA3	12	18738101	18739187	FALSE	755	-0.347739111320178	43	18683333	21462024	0.192136715055622	3	NA	0.192136715055622	3	NA	2778691	NA	14	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CAPZB	1	19338776	19485539	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	CARD10	22	37490362	37519542	FALSE	1263	-0.528184158498335	29	36991204	37967644	NA	2	NA	NA	2	NA	976440	NA	31	25	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CARD11	7	2906141	3043945	FALSE	452	1.72831760854182	97	2906135	3301584	0.364342740527346	21	NA	0.364342740527346	21	NA	395449	NA	2	28	1	FALSE	AMP	PASS
659_bTo_pair	CARD14	17	80169992	80209331	FALSE	1081	-0.503130193321286	34	78873805	80288187	NA	2	NA	NA	2	NA	1414382	NA	19	24	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CARD16	11	105041326	105101431	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	CARD17	11	105092469	105101431	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	CARD18	11	105137721	105531697	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	CARD19	9	93096218	93113283	FALSE	606	-0.547644280946133	27	91214370	95094057	1	2	1	1	2	1	3879687	1	31	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	CARD6	5	40841184	40860175	FALSE	316	-0.143574193475256	49	39021030	43704252	0.365165917639896	3	1	0.365165917639896	3	1	4683222	2	28	14	0	FALSE	GAIN	PASS
659_bTo_pair	CARD8	19	48180770	48255946	FALSE	1187	-0.64296711085636	26	47021158	48297657	NA	2	NA	NA	2	NA	1276499	NA	31	24	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CARD9	9	136361903	136373681	FALSE	629	-0.955558414525678	9	134750808	136485014	0.291955377254426	0	0	0.291955377254426	0	0	1734206	0	30	18	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CARF	2	202912214	202987063	FALSE	166	-0.425780118113581	30	201288659	203854096	1	2	1	1	2	1	2565437	1	22	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	CARHSP1	16	8852942	8869012	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	CARM1	19	10871513	10923070	FALSE	1141	-0.578703281933348	26	10514217	10929669	NA	2	NA	NA	2	NA	415452	NA	14	15	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CARMIL1	6	25279078	25620530	FALSE	373	-0.695027086668472	22	24174718	26017145	0.291335969972972	1	0	0.291335969972972	1	0	1842427	1	23	38	0	FALSE	HETLOSS	PASS
659_bTo_pair	CARMIL2	16	67644919	67657569	FALSE	979	-0.429457644119204	34	67645299	68698317	NA	2	NA	NA	2	NA	1053018	NA	33	33	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CARMIL3	14	24052000	24069728	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	39	0	FALSE	DIPLOID	PASS
659_bTo_pair	CARNMT1	9	74981020	75028423	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	CARNS1	11	67414968	67425607	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	16	3	FALSE	GAIN	PASS
659_bTo_pair	CARS	11	3000922	3057613	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	24	0	FALSE	HETLOSS	PASS
659_bTo_pair	CARS2	13	110641412	110713603	FALSE	844	-0.576217954819194	24	110150427	113263496	0.359751661895656	2	0	0.359751661895656	2	0	3113069	2	19	19	0	FALSE	CNLOH	PASS
659_bTo_pair	CARTPT	5	71719163	71721048	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	CASC1	12	25108420	25195162	FALSE	757	-0.490002350483383	34	21512373	25195063	NA	2	NA	NA	2	NA	3682690	NA	15	18	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CASC10	10	21492658	21497262	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	3	0	FALSE	CNLOH	PASS
659_bTo_pair	CASC3	17	40140318	40172183	FALSE	1030	-0.735138103765796	19	39868404	40278196	0.365165917639896	1	0	0.365165917639896	1	0	409792	1	14	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	CASC4	15	44288729	44415758	FALSE	902	-0.672637691845835	22	43521582	44676538	0.291335969972972	1	0	0.291335969972972	1	0	1154956	1	21	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	CASD1	7	94509219	94557019	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	CASK	23	41514934	41923645	FALSE	1290	-0.118437036786996	53	41447899	44844689	0.273255132087987	4	NA	0.273255132087987	4	NA	3396790	NA	11	37	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	CASKIN1	16	2177180	2196525	FALSE	941	1.39373063137147	87	2155784	2178184	0.364342740527346	16	NA	0.364342740527346	16	NA	22400	NA	2	31	0	TRUE	AMP	PASS
659_bTo_pair	CASKIN2	17	75500261	75515583	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	24	1	FALSE	DIPLOID	PASS
659_bTo_pair	CASP1	11	105025443	105035250	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	CASP10	2	201182881	201229406	FALSE	164	-0.381871160033202	39	198084145	201228955	NA	2	NA	NA	2	NA	3144810	NA	19	14	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CASP14	19	15049384	15058293	FALSE	1149	-0.413849407553013	38	14562540	15157819	0.164051638880412	2	0	0.164051638880412	2	0	595279	2	17	6	0	FALSE	CNLOH	PASS
659_bTo_pair	CASP2	7	143288215	143307696	FALSE	503	-0.495530614890199	34	143026241	143572680	NA	2	NA	NA	2	NA	546439	NA	15	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CASP3	4	184627696	184649509	FALSE	305	-0.853036814117495	12	184629284	186555336	0.365165917639896	1	0	0.365165917639896	1	0	1926052	1	22	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	CASP4	11	104942866	104969436	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	CASP5	11	104994235	105023168	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	CASP6	4	109688622	109703583	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	CASP7	10	113679162	113730907	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	9	0	FALSE	CNLOH	PASS
659_bTo_pair	CASP8	2	201233443	201287711	TRUE	165	1.56357117948677	91	201233436	201287736	0.364342740527346	19	NA	0.364342740527346	19	NA	54300	NA	1	20	2	FALSE	AMP	PASS
659_bTo_pair	CASP8AP2	6	89829894	89874436	FALSE	409	-0.443147941484883	34	89098919	90586786	NA	2	NA	NA	2	NA	1487867	NA	13	29	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CASP9	1	15490832	15526534	FALSE	6	-0.41295085321191	39	13779356	15847467	NA	2	NA	NA	2	NA	2068111	NA	18	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CASQ1	1	160190556	160201886	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	CASQ2	1	115700007	115768781	FALSE	37	-0.781726809773331	16	114718157	116404480	0.365165917639896	1	0	0.365165917639896	1	0	1686323	1	12	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	CASR	3	122183683	122291629	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	15	2	FALSE	GAIN	PASS
659_bTo_pair	CASS4	20	56412112	56460387	FALSE	1221	-0.44936578355072	34	56249153	58715213	NA	2	NA	NA	2	NA	2466060	NA	27	13	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CAST	5	96525267	96779595	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	34	3	FALSE	HETLOSS	PASS
659_bTo_pair	CASTOR1	22	30285117	30289627	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	9	0	FALSE	CNLOH	PASS
659_bTo_pair	CASTOR3	7	100200653	100272232	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	26	1	FALSE	HETLOSS	PASS
659_bTo_pair	CASZ1	1	10636604	10796650	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	30	0	FALSE	DIPLOID	PASS
659_bTo_pair	CAT	11	34438925	34472062	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	CATIP	2	218356856	218368099	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	CATSPER1	11	66016752	66026517	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	16	3	FALSE	GAIN	PASS
659_bTo_pair	CATSPER2	15	43628503	43668118	FALSE	902	-0.672637691845835	22	43521582	44676538	0.291335969972972	1	0	0.291335969972972	1	0	1154956	1	21	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	CATSPER3	5	134967906	135011707	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	CATSPER4	1	26190561	26202968	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	CATSPERB	14	91580696	91780707	FALSE	870	-0.471399657488227	30	81180359	92000019	1	2	1	1	2	1	10819660	1	29	26	0	FALSE	DIPLOID	PASS
659_bTo_pair	CATSPERD	19	5720677	5778734	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	23	1	FALSE	DIPLOID	PASS
659_bTo_pair	CATSPERE	1	244454377	244641177	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	25	0	FALSE	DIPLOID	PASS
659_bTo_pair	CATSPERG	19	38335775	38370943	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	29	2	FALSE	HETLOSS	PASS
659_bTo_pair	CATSPERZ	11	64300391	64304770	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CAV1	7	116524785	116561184	FALSE	488	-0.464127371400283	34	107070260	116559206	NA	2	NA	NA	2	NA	9488946	NA	33	4	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CAV2	7	116287380	116508541	FALSE	488	-0.464127371400283	34	107070260	116559206	NA	2	NA	NA	2	NA	9488946	NA	33	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CAV3	3	8733800	8841808	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	CAVIN1	17	42402452	42423517	FALSE	1038	-0.623371137159426	26	42404937	42698887	NA	2	NA	NA	2	NA	293950	NA	13	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CAVIN2	2	191834302	191847255	FALSE	161	-0.46057869782823	30	190057617	197310624	1	2	1	1	2	1	7253007	1	23	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	CAVIN3	11	6318946	6320647	FALSE	682	-0.308581000695747	43	6240079	6614875	0.192136715055622	3	NA	0.192136715055622	3	NA	374796	NA	15	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CAVIN4	9	100578079	100587906	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	CBARP	19	1228287	1238027	FALSE	1116	-0.668595541323287	22	1229189	1605424	0.291335969972972	1	0	0.291335969972972	1	0	376235	1	21	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	CBFA2T2	20	33490075	33650036	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	CBFA2T3	16	88874858	88977204	FALSE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	21	1	FALSE	HETLOSS	PASS
659_bTo_pair	CBFB	16	67029116	67101058	TRUE	975	1.51644121504988	90	67029378	67101013	0.364342740527346	18	NA	0.364342740527346	18	NA	71635	NA	1	15	0	FALSE	AMP	PASS
659_bTo_pair	CBL	11	119206276	119313926	TRUE	729	1.62229064559102	93	119206423	119312385	0.364342740527346	20	NA	0.364342740527346	20	NA	105962	NA	2	61	3	TRUE	AMP	PASS
659_bTo_pair	CBLB	3	105655461	105869552	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	23	3	FALSE	GAIN	PASS
659_bTo_pair	CBLC	19	44777869	44800652	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	CBLL1	7	107743697	107761667	FALSE	488	-0.464127371400283	34	107070260	116559206	NA	2	NA	NA	2	NA	9488946	NA	33	10	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CBLL2	23	22272943	22274461	FALSE	1278	-0.021616497728569	55	20155391	23935235	0.328696605851359	4	NA	0.328696605851359	4	NA	3779844	NA	16	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CBLN1	16	49277917	49281831	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	CBLN2	18	72536680	72638521	FALSE	1111	-0.872352968035647	12	63331800	74584528	0.365165917639896	1	0	0.365165917639896	1	0	11252728	1	31	4	3	FALSE	HETLOSS	PASS
659_bTo_pair	CBLN3	14	24426532	24430954	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	7	2	FALSE	DIPLOID	PASS
659_bTo_pair	CBLN4	20	55997440	56005472	FALSE	1220	-1.01213938040689	8	53953522	56248828	0.342391532111247	0	0	0.342391532111247	0	0	2295306	0	6	4	0	FALSE	HOMDEL	PASS
659_bTo_pair	CBR1	21	36069941	36073166	FALSE	1228	-0.430637379115077	30	36009679	38367602	1	2	1	1	2	1	2357923	1	17	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CBR3	21	36134912	36146566	FALSE	1228	-0.430637379115077	30	36009679	38367602	1	2	1	1	2	1	2357923	1	17	5	3	FALSE	DIPLOID	PASS
659_bTo_pair	CBR4	4	168863770	169010275	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	19	1	FALSE	HETLOSS	PASS
659_bTo_pair	CBS	21	43053191	43076943	FALSE	1234	-0.544212636077936	27	41740855	44141314	1	2	1	1	2	1	2400459	1	31	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	CBWD1	9	121038	179147	FALSE	570	-0.801602085682206	16	14889	1057241	0.365165917639896	1	0	0.365165917639896	1	0	1042352	1	9	16	2	FALSE	HETLOSS	PASS
659_bTo_pair	CBWD2	2	113437691	113496189	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	CBWD3	9	68232003	68300015	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	CBWD5	9	65668805	65734041	FALSE	595	-0.209027397852981	47	37442028	67884575	0.365165917639896	3	1	0.365165917639896	3	1	30442547	2	35	5	0	FALSE	GAIN	PASS
659_bTo_pair	CBWD6	9	41131306	41199261	FALSE	595	-0.209027397852981	47	37442028	67884575	0.365165917639896	3	1	0.365165917639896	3	1	30442547	2	35	8	1	FALSE	GAIN	PASS
659_bTo_pair	CBX1	17	48070052	48101521	FALSE	1049	-0.703360644300681	22	47810585	48529853	0.291335969972972	1	0	0.291335969972972	1	0	719268	1	15	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	CBX2	17	79778132	79787983	FALSE	1081	-0.503130193321286	34	78873805	80288187	NA	2	NA	NA	2	NA	1414382	NA	19	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CBX3	7	26201162	26213356	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	5	1	FALSE	GAIN	PASS
659_bTo_pair	CBX4	17	79833156	79839429	FALSE	1081	-0.503130193321286	34	78873805	80288187	NA	2	NA	NA	2	NA	1414382	NA	19	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CBX5	12	54230940	54280133	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	CBX6	22	38861450	38872314	FALSE	1265	-0.53141020507802	29	38041114	39152464	NA	2	NA	NA	2	NA	1111350	NA	31	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CBX7	22	39120167	39152674	FALSE	1265	-0.53141020507802	29	38041114	39152464	NA	2	NA	NA	2	NA	1111350	NA	31	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CBX8	17	79792132	79801683	FALSE	1081	-0.503130193321286	34	78873805	80288187	NA	2	NA	NA	2	NA	1414382	NA	19	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CBY1	22	38656636	38673854	FALSE	1265	-0.53141020507802	29	38041114	39152464	NA	2	NA	NA	2	NA	1111350	NA	31	5	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CBY3	5	179678583	179680974	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	CC2D1A	19	13906201	13930879	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	25	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CC2D1B	1	52345723	52366193	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	23	0	FALSE	DIPLOID	PASS
659_bTo_pair	CC2D2A	4	15469865	15601557	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	39	0	FALSE	GAIN	PASS
659_bTo_pair	CC2D2B	10	95907603	96032684	FALSE	663	-0.556688707084635	24	94775074	96952170	0.359751661895656	2	0	0.359751661895656	2	0	2177096	2	21	35	2	FALSE	CNLOH	PASS
659_bTo_pair	CCAR1	10	68721012	68792377	FALSE	651	-0.523280686314431	28	68722553	70760843	0.351300687168522	2	0	0.351300687168522	2	0	2038290	2	27	25	2	FALSE	CNLOH	PASS
659_bTo_pair	CCAR2	8	22604632	22621514	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCBE1	18	59430939	59697662	FALSE	1107	-0.779150604055344	19	58918284	59696746	0.365165917639896	1	0	0.365165917639896	1	0	778462	1	7	11	2	TRUE	HETLOSS	PASS
659_bTo_pair	CCDC102A	16	57512178	57536599	FALSE	971	-0.537344591536493	29	57069860	57923335	NA	2	NA	NA	2	NA	853475	NA	21	12	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CCDC102B	18	68715209	69055189	FALSE	1111	-0.872352968035647	12	63331800	74584528	0.365165917639896	1	0	0.365165917639896	1	0	11252728	1	31	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCDC103	17	44899142	44905390	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CCDC105	19	15010744	15023269	FALSE	1149	-0.413849407553013	38	14562540	15157819	0.164051638880412	2	0	0.164051638880412	2	0	595279	2	17	10	3	FALSE	CNLOH	PASS
659_bTo_pair	CCDC106	19	55641062	55653161	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	12	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CCDC107	9	35658290	35661511	FALSE	590	0.518634267342274	67	35107891	35683151	0.364342740527346	7	2	0.364342740527346	7	2	575260	5	11	6	1	FALSE	AMP	PASS
659_bTo_pair	CCDC110	4	185445182	185471759	FALSE	305	-0.853036814117495	12	184629284	186555336	0.365165917639896	1	0	0.365165917639896	1	0	1926052	1	22	16	5	FALSE	HETLOSS	PASS
659_bTo_pair	CCDC112	5	115267188	115296831	FALSE	331	-0.706980197323045	20	112861366	122075379	0.365165917639896	1	0	0.365165917639896	1	0	9214013	1	31	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCDC113	16	58231157	58283836	FALSE	972	-0.499158643645776	34	57931773	64947842	NA	2	NA	NA	2	NA	7016069	NA	18	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CCDC114	19	48296457	48321894	FALSE	1187	-0.64296711085636	26	47021158	48297657	NA	2	NA	NA	2	NA	1276499	NA	31	14	2	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	CCDC115	2	130338241	130342349	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC116	22	21632716	21637327	FALSE	1246	-0.481954888210425	34	21001894	21693896	NA	2	NA	NA	2	NA	692002	NA	14	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CCDC117	22	28772674	28789301	FALSE	1255	0.261638839895489	63	28687966	29044744	0.364342740527346	6	NA	0.364342740527346	6	NA	356778	NA	5	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	CCDC12	3	46921726	46982010	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCDC120	23	49053572	49069857	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	14	0	FALSE	AMP (many states)	PASS
659_bTo_pair	CCDC121	2	27625639	27629012	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC122	13	43823909	43879727	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCDC124	19	17933016	17943991	FALSE	1157	-0.332253297419471	43	17859980	18149705	0.192136715055622	3	NA	0.192136715055622	3	NA	289725	NA	7	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CCDC125	5	69280175	69332809	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	13	1	FALSE	HETLOSS	PASS
659_bTo_pair	CCDC126	7	23597379	23644708	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	3	0	FALSE	GAIN	PASS
659_bTo_pair	CCDC127	5	196871	218215	FALSE	308	-0.255094097331532	44	92297	1246091	0.345317016959666	3	1	0.345317016959666	3	1	1153794	2	18	5	1	FALSE	GAIN	PASS
659_bTo_pair	CCDC13	3	42708269	42773253	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCDC130	19	13731760	13763296	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	10	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	CCDC134	22	41800679	41826299	FALSE	1269	-0.443951758803067	34	41205309	42514754	NA	2	NA	NA	2	NA	1309445	NA	31	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CCDC136	7	128790757	128822132	FALSE	492	-0.463656181520944	30	126439208	129166764	1	2	1	1	2	1	2727556	1	27	24	1	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC137	17	81666364	81673904	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC138	2	108786757	108885477	FALSE	134	-0.415117895462051	39	108786846	111117811	NA	2	NA	NA	2	NA	2330965	NA	16	16	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CCDC14	3	123897305	123961408	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	18	3	FALSE	GAIN	PASS
659_bTo_pair	CCDC140	2	222298147	222305217	FALSE	180	1.4370284701423	88	222220464	222298820	0.364342740527346	17	NA	0.364342740527346	17	NA	78356	NA	2	4	0	TRUE	AMP	PASS
659_bTo_pair	CCDC141	2	178829757	179050086	FALSE	155	-0.524315670340053	27	177420364	181062892	1	2	1	1	2	1	3642528	1	16	27	3	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC142	2	74471986	74483408	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	19	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CCDC144A	17	16689537	16777881	FALSE	1012	-0.646922995033775	26	16234077	17184849	NA	2	NA	NA	2	NA	950772	NA	11	26	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CCDC144NL	17	20836447	20896140	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	5	0	FALSE	CNLOH	PASS
659_bTo_pair	CCDC146	7	77122434	77329533	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	38	3	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC148	2	158171081	158456753	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	15	2	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC149	4	24806117	24980204	FALSE	278	-0.217595572850614	44	20704713	38137253	0.345317016959666	3	1	0.345317016959666	3	1	17432540	2	29	15	2	FALSE	GAIN	PASS
659_bTo_pair	CCDC15	11	124954121	125041489	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	19	6	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC150	2	196639554	196763490	FALSE	161	-0.46057869782823	30	190057617	197310624	1	2	1	1	2	1	7253007	1	23	29	0	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC151	19	11420604	11435782	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC152	5	42756801	42802360	FALSE	316	-0.143574193475256	49	39021030	43704252	0.365165917639896	3	1	0.365165917639896	3	1	4683222	2	28	11	0	FALSE	GAIN	PASS
659_bTo_pair	CCDC153	11	119189638	119196769	FALSE	728	-0.487905654975058	30	118527582	119195409	1	2	1	1	2	1	667827	1	26	6	2	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC154	16	1434383	1444556	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	18	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CCDC155	19	49388218	49417994	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	19	1	FALSE	HETLOSS	PASS
659_bTo_pair	CCDC157	22	30356635	30378658	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	15	0	FALSE	CNLOH	PASS
659_bTo_pair	CCDC158	4	76312997	76421868	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	26	0	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC159	19	11344684	11354944	FALSE	1143	-0.599591757528625	23	11089545	11375998	0.186356639256811	1	0	0.186356639256811	1	0	286453	1	11	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCDC160	23	134237047	134246207	FALSE	1335	0.100243493544559	59	130066940	134244999	0.308533751035793	5	NA	0.308533751035793	5	NA	4178059	NA	21	4	0	TRUE	AMP (many states)	PASS
659_bTo_pair	CCDC163	1	45493866	45500079	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC166	8	143706694	143708109	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC167	6	37482920	37499922	FALSE	397	-0.509151429367598	27	37213022	41687167	1	2	1	1	2	1	4474145	1	33	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC168	13	102729369	102759070	FALSE	840	-0.335776033141145	43	102193037	102839809	0.192136715055622	3	NA	0.192136715055622	3	NA	646772	NA	9	83	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CCDC169	13	36222008	36297840	FALSE	830	-0.745621963362667	19	32401848	39788354	0.365165917639896	1	0	0.365165917639896	1	0	7386506	1	30	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCDC169-SOHLH2	13	36168794	36297842	FALSE	830	-0.745621963362667	19	32401848	39788354	0.365165917639896	1	0	0.365165917639896	1	0	7386506	1	30	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCDC17	1	45620044	45624057	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	13	3	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC170	6	151494030	151621193	FALSE	438	-0.675524335299184	22	151405234	151618046	0.291335969972972	1	0	0.291335969972972	1	0	212812	1	3	15	2	FALSE	HETLOSS	PASS
659_bTo_pair	CCDC171	9	15553086	16061663	FALSE	581	-0.746183084602222	19	10618009	19786745	0.365165917639896	1	0	0.365165917639896	1	0	9168736	1	24	29	3	FALSE	HETLOSS	PASS
659_bTo_pair	CCDC172	10	116324428	116380029	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	8	0	FALSE	CNLOH	PASS
659_bTo_pair	CCDC173	2	169645425	169694433	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC174	3	14651746	14672659	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCDC175	14	59504539	59576831	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC177	14	69569816	69574837	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	7	2	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC178	18	32937402	33441101	FALSE	1094	-1.18756130109789	6	32938019	33731953	0.365165917639896	0	0	0.365165917639896	0	0	793934	0	2	23	2	FALSE	HOMDEL	PASS
659_bTo_pair	CCDC179	11	22846931	22860426	FALSE	689	-0.596895402665017	26	22674905	26692543	NA	2	NA	NA	2	NA	4017638	NA	7	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CCDC18	1	93179919	93278730	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	32	5	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC180	9	97307304	97378524	FALSE	608	-0.541405085979946	27	95522076	99069752	1	2	1	1	2	1	3547676	1	31	39	5	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC181	1	169394870	169460669	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC182	17	57744481	57745312	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CCDC183	9	136796350	136807741	FALSE	631	-1.04738377038343	8	136673897	136866235	0.342391532111247	0	0	0.342391532111247	0	0	192338	0	15	14	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CCDC184	12	48183584	48185926	FALSE	768	-0.491963868457131	34	48045387	49018767	NA	2	NA	NA	2	NA	973380	NA	28	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CCDC185	1	223393417	223395470	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	8	3	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC186	10	114120862	114174232	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	20	0	FALSE	CNLOH	PASS
659_bTo_pair	CCDC188	22	20148427	20151065	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	5	1	FALSE	CNLOH	PASS
659_bTo_pair	CCDC189	16	30757423	30762710	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC190	1	162824458	162868815	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC191	3	113964137	114056613	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	19	0	FALSE	GAIN	PASS
659_bTo_pair	CCDC192	5	127703389	127941634	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCDC196	14	66411704	66498677	FALSE	862	-0.496151350288089	31	65561584	67816009	1	2	1	1	2	1	2254425	1	17	10	2	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC197	14	93987225	94008863	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	7	2	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC198	14	57469301	57493867	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC200	17	43216941	43305397	FALSE	1042	-0.917571943211592	13	43146172	43526465	0.365165917639896	1	0	0.365165917639896	1	0	380293	1	6	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCDC22	23	49235467	49250526	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	17	0	FALSE	AMP (many states)	PASS
659_bTo_pair	CCDC24	1	43991359	43996528	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC25	8	27733311	27772653	FALSE	523	-1.08188475411826	8	27469296	29263060	0.342391532111247	0	0	0.342391532111247	0	0	1793764	0	18	9	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CCDC27	1	3746460	3771645	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC28A	6	138773509	138793319	FALSE	429	-0.412609995390511	39	138092232	142443520	NA	2	NA	NA	2	NA	4351288	NA	18	6	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CCDC28B	1	32200386	32205387	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC3	10	12896625	13099652	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	5	0	FALSE	CNLOH	PASS
659_bTo_pair	CCDC30	1	42463330	42654664	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	17	4	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC32	15	40528683	40565057	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCDC33	15	74202705	74336472	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	24	2	FALSE	HETLOSS	PASS
659_bTo_pair	CCDC34	11	27330827	27363868	FALSE	690	-0.499672577426227	34	26697185	32104345	NA	2	NA	NA	2	NA	5407160	NA	20	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CCDC36	3	49198428	49258104	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCDC38	12	95867048	95942974	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	15	3	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC39	3	180602858	180870933	FALSE	253	-0.302573270656947	43	179243074	180989661	0.192136715055622	3	NA	0.192136715055622	3	NA	1746587	NA	13	34	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	CCDC40	17	80036632	80100613	FALSE	1081	-0.503130193321286	34	78873805	80288187	NA	2	NA	NA	2	NA	1414382	NA	19	26	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CCDC42	17	8729934	8745219	FALSE	1006	-0.894220729735546	12	8370429	10825247	0.365165917639896	1	0	0.365165917639896	1	0	2454818	1	31	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCDC43	17	44673069	44689779	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CCDC47	17	63745250	63776351	FALSE	1064	-0.419094292936043	39	61867575	63873599	NA	2	NA	NA	2	NA	2006024	NA	24	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CCDC50	3	191329077	191398670	FALSE	269	-0.263219948753545	44	189957970	195888442	0.345317016959666	3	1	0.345317016959666	3	1	5930472	2	31	14	4	FALSE	GAIN	PASS
659_bTo_pair	CCDC51	3	48432164	48440456	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCDC54	3	107377194	107378637	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	5	0	FALSE	GAIN	PASS
659_bTo_pair	CCDC57	17	82101460	82212830	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	19	9	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC58	3	122359591	122383231	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	5	1	FALSE	GAIN	PASS
659_bTo_pair	CCDC59	12	82223681	82358805	FALSE	793	-0.510041181295141	29	76355979	85286979	NA	2	NA	NA	2	NA	8931000	NA	22	6	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CCDC6	10	59788763	59906656	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	10	0	FALSE	CNLOH	PASS
659_bTo_pair	CCDC60	12	119334712	119541047	FALSE	808	-0.531025796359709	27	115966146	120090026	1	2	1	1	2	1	4123880	1	23	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC61	19	45995461	46021318	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	16	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CCDC62	12	122774327	122827528	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC63	12	110846769	110907535	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC65	12	48904110	48931840	FALSE	768	-0.491963868457131	34	48045387	49018767	NA	2	NA	NA	2	NA	973380	NA	28	16	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CCDC66	3	56557161	56621818	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	25	3	FALSE	HETLOSS	PASS
659_bTo_pair	CCDC68	18	54901509	54959508	FALSE	1105	-0.785555027616249	16	52752095	58670682	0.365165917639896	1	0	0.365165917639896	1	0	5918587	1	19	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCDC69	5	151181052	151224145	FALSE	350	-0.819899512516675	16	150444373	153997804	0.365165917639896	1	0	0.365165917639896	1	0	3553431	1	25	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCDC7	10	32446140	32882874	FALSE	640	-0.421497241268382	32	32269100	43094667	0.365165917639896	2	0	0.365165917639896	2	0	10825567	2	20	43	7	FALSE	CNLOH	PASS
659_bTo_pair	CCDC70	13	51861981	51866232	FALSE	836	-0.444239733377228	32	50956423	72747004	0.365165917639896	2	0	0.365165917639896	2	0	21790581	2	40	3	1	FALSE	CNLOH	PASS
659_bTo_pair	CCDC71	3	49162535	49166321	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCDC71L	7	106656765	106660996	FALSE	487	1.90667166698194	101	106248413	107045195	0.364342740527346	25	NA	0.364342740527346	25	NA	796782	NA	4	3	0	FALSE	AMP	PASS
659_bTo_pair	CCDC73	11	32602246	32794658	FALSE	692	-0.391103687852083	35	32583952	33774394	1	2	1	1	2	1	1190442	1	13	24	3	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC74A	2	131527675	131533666	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC74B	2	130139287	130145134	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	8	3	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC77	12	389273	442645	FALSE	737	-0.295216300061446	43	409362	894533	0.192136715055622	3	NA	0.192136715055622	3	NA	485171	NA	4	11	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	CCDC78	16	722582	726954	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	12	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CCDC8	19	46410329	46413662	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CCDC80	3	112596794	112649530	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	15	1	FALSE	GAIN	PASS
659_bTo_pair	CCDC81	11	86374736	86423109	FALSE	714	-0.230278951577934	46	86306357	90211282	0.298322295679939	3	NA	0.298322295679939	3	NA	3904925	NA	21	16	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CCDC82	11	96352769	96389956	FALSE	717	-0.427991611956568	34	94512673	100992623	NA	2	NA	NA	2	NA	6479950	NA	19	11	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CCDC83	11	85855101	85920021	FALSE	712	-0.188800010767045	48	77590086	86068715	0.365165917639896	3	NA	0.365165917639896	3	NA	8478629	NA	30	11	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CCDC84	11	118998142	119015791	FALSE	728	-0.487905654975058	30	118527582	119195409	1	2	1	1	2	1	667827	1	26	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC85A	2	56184123	56386173	FALSE	112	-0.500204609420994	34	55349629	58154733	NA	2	NA	NA	2	NA	2805104	NA	7	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CCDC85B	11	65890112	65891635	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	3	0	FALSE	GAIN	PASS
659_bTo_pair	CCDC85C	14	99500180	99604026	FALSE	876	-0.546199181806584	27	96039535	102050530	1	2	1	1	2	1	6010995	1	30	18	1	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC86	11	60842071	60851081	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	6	0	FALSE	GAIN	PASS
659_bTo_pair	CCDC87	11	66590176	66593083	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	10	0	FALSE	GAIN	PASS
659_bTo_pair	CCDC88A	2	55287842	55419895	FALSE	111	-0.244883980498374	46	54612139	55346218	0.298322295679939	3	NA	0.298322295679939	3	NA	734079	NA	7	38	2	TRUE	GAIN (many states)	PASS
659_bTo_pair	CCDC88B	11	64340223	64357534	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	32	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CCDC88C	14	91271323	91417844	FALSE	870	-0.471399657488227	30	81180359	92000019	1	2	1	1	2	1	10819660	1	29	40	3	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC89	11	85684866	85686277	FALSE	712	-0.188800010767045	48	77590086	86068715	0.365165917639896	3	NA	0.365165917639896	3	NA	8478629	NA	30	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CCDC9	19	47255980	47273701	FALSE	1187	-0.64296711085636	26	47021158	48297657	NA	2	NA	NA	2	NA	1276499	NA	31	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CCDC90B	11	83259097	83286407	FALSE	712	-0.188800010767045	48	77590086	86068715	0.365165917639896	3	NA	0.365165917639896	3	NA	8478629	NA	30	9	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	CCDC91	12	28133249	28581511	FALSE	759	-0.427669886187443	30	25503824	31088026	1	2	1	1	2	1	5584202	1	28	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC92	12	123918660	123972831	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	25	3	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC93	2	117915478	118014133	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	24	1	FALSE	DIPLOID	PASS
659_bTo_pair	CCDC96	4	7040849	7042939	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	7	0	FALSE	GAIN	PASS
659_bTo_pair	CCDC97	19	41310189	41324883	FALSE	1175	-0.78792654264608	16	41264609	41322635	0.365165917639896	1	0	0.365165917639896	1	0	58026	1	3	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCDC9B	15	40331452	40340967	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	12	3	FALSE	HETLOSS	PASS
659_bTo_pair	CCER1	12	90905622	90955176	FALSE	794	-0.258431968401282	46	85301316	91178343	0.298322295679939	3	NA	0.298322295679939	3	NA	5877027	NA	19	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CCER2	19	38908980	38912158	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCHCR1	6	31142439	31158238	FALSE	379	-0.524744136561063	27	30546321	31270541	1	2	1	1	2	1	724220	1	30	19	7	FALSE	DIPLOID	PASS
659_bTo_pair	CCIN	9	36169394	36171334	FALSE	592	-0.0369931589847324	55	36052313	36828293	0.328696605851359	4	NA	0.328696605851359	4	NA	775980	NA	7	7	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	CCK	3	42257825	42266207	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCKAR	4	26481400	26490462	FALSE	278	-0.217595572850614	44	20704713	38137253	0.345317016959666	3	1	0.345317016959666	3	1	17432540	2	29	9	1	FALSE	GAIN	PASS
659_bTo_pair	CCKBR	11	6259736	6272127	FALSE	682	-0.308581000695747	43	6240079	6614875	0.192136715055622	3	NA	0.192136715055622	3	NA	374796	NA	15	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CCL1	17	34360328	34363231	FALSE	1022	-0.670211431189836	22	32030679	35026358	0.291335969972972	1	0	0.291335969972972	1	0	2995679	1	23	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCL11	17	34285668	34288334	FALSE	1022	-0.670211431189836	22	32030679	35026358	0.291335969972972	1	0	0.291335969972972	1	0	2995679	1	23	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCL13	17	34356452	34358610	FALSE	1022	-0.670211431189836	22	32030679	35026358	0.291335969972972	1	0	0.291335969972972	1	0	2995679	1	23	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCL14	17	35983291	35987004	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	3	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CCL15	17	35996440	36002038	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CCL15-CCL14	17	35983656	36001621	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	7	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CCL16	17	35976493	35981496	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	3	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CCL17	16	57404767	57416062	FALSE	971	-0.537344591536493	29	57069860	57923335	NA	2	NA	NA	2	NA	853475	NA	21	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CCL18	17	36064280	36072032	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	3	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CCL19	9	34689567	34691277	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	4	0	FALSE	CNLOH	PASS
659_bTo_pair	CCL2	17	34255218	34257203	FALSE	1022	-0.670211431189836	22	32030679	35026358	0.291335969972972	1	0	0.291335969972972	1	0	2995679	1	23	3	1	FALSE	HETLOSS	PASS
659_bTo_pair	CCL20	2	227805739	227817564	FALSE	186	-0.695736902539597	22	226867246	227993567	0.291335969972972	1	0	0.291335969972972	1	0	1126321	1	19	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCL21	9	34709005	34710124	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	3	0	FALSE	CNLOH	PASS
659_bTo_pair	CCL22	16	57358772	57366190	FALSE	971	-0.537344591536493	29	57069860	57923335	NA	2	NA	NA	2	NA	853475	NA	21	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CCL23	17	36013056	36017968	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	4	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CCL24	7	75811665	75823356	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	3	2	FALSE	DIPLOID	PASS
659_bTo_pair	CCL25	19	8052767	8062650	FALSE	1132	-0.583194501817822	26	7916513	8843246	NA	2	NA	NA	2	NA	926733	NA	25	5	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CCL26	7	75769533	75789896	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	3	2	FALSE	DIPLOID	PASS
659_bTo_pair	CCL27	9	34661880	34664048	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	3	0	FALSE	CNLOH	PASS
659_bTo_pair	CCL28	5	43376645	43412391	FALSE	316	-0.143574193475256	49	39021030	43704252	0.365165917639896	3	1	0.365165917639896	3	1	4683222	2	28	3	0	FALSE	GAIN	PASS
659_bTo_pair	CCL3	17	36088256	36090169	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	3	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CCL3L1	17	36194869	36196758	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	3	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CCL4	17	36103590	36105621	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	3	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CCL4L2	17	36210924	36212878	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	2	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CCL5	17	35871491	35880793	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CCL7	17	34270221	34272242	FALSE	1022	-0.670211431189836	22	32030679	35026358	0.291335969972972	1	0	0.291335969972972	1	0	2995679	1	23	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCL8	17	34319036	34321402	FALSE	1022	-0.670211431189836	22	32030679	35026358	0.291335969972972	1	0	0.291335969972972	1	0	2995679	1	23	3	1	FALSE	HETLOSS	PASS
659_bTo_pair	CCM2	7	44999475	45076469	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	13	1	FALSE	GAIN	PASS
659_bTo_pair	CCM2L	20	32010450	32032180	FALSE	1201	-0.583226555890856	26	31757461	32331296	NA	2	NA	NA	2	NA	573835	NA	13	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CCNA1	13	36431520	36442882	FALSE	830	-0.745621963362667	19	32401848	39788354	0.365165917639896	1	0	0.365165917639896	1	0	7386506	1	30	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCNA2	4	121816444	121823933	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	CCNB1	5	69167010	69178245	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCNB1IP1	14	20311368	20333312	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	CCNB2	15	59105078	59125045	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	CCNB3	23	50202713	50351910	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	22	0	FALSE	AMP (many states)	PASS
659_bTo_pair	CCNC	6	99542380	99568973	FALSE	411	-0.455063723695114	34	95586870	106069771	NA	2	NA	NA	2	NA	10482901	NA	27	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CCND1	11	69641087	69654474	FALSE	707	2.08552379511487	105	69641288	69819259	0.364342740527346	28	NA	0.364342740527346	28	NA	177971	NA	5	18	0	FALSE	AMP	PASS
659_bTo_pair	CCND2	12	4273772	4305350	FALSE	740	2.34844226201143	111	4270040	4445757	0.364342740527346	35	NA	0.364342740527346	35	NA	175717	NA	5	27	0	FALSE	AMP	PASS
659_bTo_pair	CCND3	6	41934933	42050357	FALSE	400	2.28944927977985	110	41932608	42049956	0.364342740527346	33	NA	0.364342740527346	33	NA	117348	NA	2	18	2	FALSE	AMP	PASS
659_bTo_pair	CCNDBP1	15	43185118	43197176	FALSE	900	-0.777056562410308	17	42718512	43401817	0.365165917639896	1	0	0.365165917639896	1	0	683305	1	13	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCNE1	19	29811898	29824308	FALSE	1164	1.76669211503149	98	29811998	29824293	0.364342740527346	22	NA	0.364342740527346	22	NA	12295	NA	1	14	0	FALSE	AMP	PASS
659_bTo_pair	CCNE2	8	94879770	94896678	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	11	0	FALSE	GAIN	PASS
659_bTo_pair	CCNF	16	2429394	2458854	FALSE	942	-0.803500535593988	16	2178660	2530995	0.365165917639896	1	0	0.365165917639896	1	0	352335	1	18	19	1	FALSE	HETLOSS	PASS
659_bTo_pair	CCNG1	5	163437569	163446151	FALSE	356	-0.773912908266316	17	162095550	171298806	0.365165917639896	1	0	0.365165917639896	1	0	9203256	1	21	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCNG2	4	77157151	77433388	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	CCNH	5	87318416	87413019	FALSE	328	0.354456346741201	65	87268109	87391848	0.364342740527346	6	NA	0.364342740527346	6	NA	123739	NA	2	45	0	TRUE	AMP (many states)	PASS
659_bTo_pair	CCNI	4	77047158	77076005	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	CCNI2	5	132747445	132754403	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCNJ	10	96043394	96060870	FALSE	663	-0.556688707084635	24	94775074	96952170	0.359751661895656	2	0	0.359751661895656	2	0	2177096	2	21	7	0	FALSE	CNLOH	PASS
659_bTo_pair	CCNJL	5	160249106	160345396	FALSE	353	-0.698571741790457	22	157138801	161546576	0.291335969972972	1	0	0.291335969972972	1	0	4407775	1	29	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCNK	14	99481169	99535044	FALSE	876	-0.546199181806584	27	96039535	102050530	1	2	1	1	2	1	6010995	1	30	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	CCNL1	3	157146508	157160760	FALSE	250	-0.231905273142314	46	156829339	161250770	0.298322295679939	3	NA	0.298322295679939	3	NA	4421431	NA	26	13	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CCNL2	1	1385711	1399328	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	15	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CCNO	5	55231152	55233680	FALSE	319	-0.764156631411702	19	50399919	56556187	0.365165917639896	1	0	0.365165917639896	1	0	6156268	1	28	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCNQ	23	153587919	153600045	TRUE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	6	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	CCNT1	12	48688458	48716998	FALSE	768	-0.491963868457131	34	48045387	49018767	NA	2	NA	NA	2	NA	973380	NA	28	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CCNT2	2	134918235	134959342	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	CCNY	10	35247025	35572669	FALSE	640	-0.421497241268382	32	32269100	43094667	0.365165917639896	2	0	0.365165917639896	2	0	10825567	2	20	10	1	FALSE	CNLOH	PASS
659_bTo_pair	CCNYL1	2	207711540	207761839	FALSE	168	-0.499602545595775	30	203936898	208231285	1	2	1	1	2	1	4294387	1	25	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	CCP110	16	19523811	19553408	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	20	2	FALSE	DIPLOID	PASS
659_bTo_pair	CCPG1	15	55340032	55408510	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	19	1	FALSE	HETLOSS	PASS
659_bTo_pair	CCR1	3	46201709	46208396	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCR10	17	42678889	42683917	FALSE	1038	-0.623371137159426	26	42404937	42698887	NA	2	NA	NA	2	NA	293950	NA	13	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CCR2	3	46353734	46360928	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCR3	3	46163604	46266706	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCR4	3	32951574	32956349	FALSE	209	-0.637968449787088	26	31990360	37328493	NA	2	NA	NA	2	NA	5338133	NA	26	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CCR5	3	46370854	46376206	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCR6	6	167111807	167139696	FALSE	448	-0.0954555878575429	53	167040062	167373262	0.273255132087987	4	NA	0.273255132087987	4	NA	333200	NA	7	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CCR7	17	40553769	40565472	FALSE	1032	0.021285439110795	56	40363122	40620051	0.365165917639896	4	NA	0.365165917639896	4	NA	256929	NA	5	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CCR8	3	39329706	39333511	FALSE	212	-0.750996176556328	19	38165958	40533064	0.365165917639896	1	0	0.365165917639896	1	0	2367106	1	26	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCR9	3	45886504	45903177	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCRL2	3	46407163	46412997	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	6	2	FALSE	HETLOSS	PASS
659_bTo_pair	CCS	11	66592821	66606019	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	10	0	FALSE	GAIN	PASS
659_bTo_pair	CCSAP	1	229321005	229343294	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	CCSER1	4	90127535	91601913	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	17	2	FALSE	DIPLOID	PASS
659_bTo_pair	CCSER2	10	84328558	84518521	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	20	0	FALSE	CNLOH	PASS
659_bTo_pair	CCT2	12	69585334	69601570	FALSE	789	2.5930897474487	115	69470390	69586384	0.364342740527346	42	NA	0.364342740527346	42	NA	115994	NA	2	16	0	TRUE	AMP	PASS
659_bTo_pair	CCT3	1	156308968	156367873	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	CCT4	2	61868089	61888804	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	CCT5	5	10249921	10266412	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	13	2	FALSE	GAIN	PASS
659_bTo_pair	CCT6A	7	56051630	56063989	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	CCT6B	17	34927859	34981078	FALSE	1022	-0.670211431189836	22	32030679	35026358	0.291335969972972	1	0	0.291335969972972	1	0	2995679	1	23	19	2	FALSE	HETLOSS	PASS
659_bTo_pair	CCT7	2	73233420	73253021	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	CCT8	21	29055805	29073797	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	CCT8L2	22	16590751	16592810	FALSE	1240	-0.594689860601271	26	15528179	18606839	NA	2	NA	NA	2	NA	3078660	NA	21	7	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CCZ1	7	5898725	5926550	FALSE	455	0.0869447764468888	59	5592963	6026819	0.308533751035793	5	NA	0.308533751035793	5	NA	433856	NA	8	15	1	FALSE	AMP (many states)	PASS
659_bTo_pair	CCZ1B	7	6794134	6826770	FALSE	456	-0.240618790532325	45	6028682	12688782	0.279823559258657	3	0	0.279823559258657	3	0	6660100	3	32	15	2	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	CD101	1	117001750	117036476	FALSE	39	-0.830052301686955	16	116577512	117118673	0.365165917639896	1	0	0.365165917639896	1	0	541161	1	6	16	1	FALSE	HETLOSS	PASS
659_bTo_pair	CD109	6	73695785	73828316	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	36	2	FALSE	DIPLOID	PASS
659_bTo_pair	CD14	5	140631728	140633701	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CD151	11	832843	839831	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CD160	1	145719471	145739288	FALSE	44	-0.0508975396039555	55	119911615	146019534	0.328696605851359	4	NA	0.328696605851359	4	NA	26107919	NA	33	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CD163	12	7470813	7503893	FALSE	745	-0.243574834353832	44	6965649	8175835	0.345317016959666	3	1	0.345317016959666	3	1	1210186	2	26	23	5	FALSE	GAIN	PASS
659_bTo_pair	CD163L1	12	7346685	7479897	FALSE	745	-0.243574834353832	44	6965649	8175835	0.345317016959666	3	1	0.345317016959666	3	1	1210186	2	26	30	2	FALSE	GAIN	PASS
659_bTo_pair	CD164	6	109366514	109382812	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	CD164L2	1	27379176	27383380	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CD177	19	43353659	43363172	FALSE	1179	-0.582084941516902	26	42297317	43535595	NA	2	NA	NA	2	NA	1238278	NA	25	10	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CD180	5	67179613	67196799	FALSE	323	-0.645106866010582	25	58495036	67196614	0.365165917639896	1	0	0.365165917639896	1	0	8701578	1	31	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	CD19	16	28931939	28939346	FALSE	963	1.40568370624391	88	28932030	28938951	0.364342740527346	16	NA	0.364342740527346	16	NA	6921	NA	2	15	0	FALSE	AMP	PASS
659_bTo_pair	CD1A	1	158254137	158258269	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	CD1B	1	158327951	158331531	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	CD1C	1	158289786	158293630	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	CD1D	1	158179947	158184896	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	CD1E	1	158353696	158357553	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	CD2	1	116754385	116769228	FALSE	39	-0.830052301686955	16	116577512	117118673	0.365165917639896	1	0	0.365165917639896	1	0	541161	1	6	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	CD200	3	112332347	112362812	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	9	2	FALSE	GAIN	PASS
659_bTo_pair	CD200R1	3	112921209	112975122	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	9	3	FALSE	GAIN	PASS
659_bTo_pair	CD200R1L	3	112815709	112846856	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	7	1	FALSE	GAIN	PASS
659_bTo_pair	CD207	2	70830214	70835822	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	7	6	FALSE	DIPLOID	PASS
659_bTo_pair	CD209	19	7739994	7747564	FALSE	1130	-0.690953718254595	21	7440128	7870576	0.140309795179477	0	0	0.140309795179477	0	0	430448	0	25	10	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CD22	19	35319261	35347355	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	17	2	FALSE	HETLOSS	PASS
659_bTo_pair	CD226	18	69831158	69961803	FALSE	1111	-0.872352968035647	12	63331800	74584528	0.365165917639896	1	0	0.365165917639896	1	0	11252728	1	31	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	CD244	1	160830160	160862855	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	CD247	1	167430640	167518610	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	CD248	11	66314487	66317044	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	9	0	FALSE	GAIN	PASS
659_bTo_pair	CD27	12	6444867	6451718	FALSE	741	-0.251609480735115	44	4489790	6567957	0.345317016959666	3	1	0.345317016959666	3	1	2078167	2	28	6	0	FALSE	GAIN	PASS
659_bTo_pair	CD274	9	5450503	5470566	FALSE	577	-0.270687969755387	46	5163973	5467073	0.298322295679939	3	NA	0.298322295679939	3	NA	303100	NA	6	24	0	TRUE	GAIN (many states)	PASS
659_bTo_pair	CD276	15	73683966	73714518	FALSE	913	2.00051364887062	104	73684280	73714502	0.364342740527346	27	NA	0.364342740527346	27	NA	30222	NA	1	22	9	FALSE	AMP	PASS
659_bTo_pair	CD28	2	203706475	203738912	FALSE	166	-0.425780118113581	30	201288659	203854096	1	2	1	1	2	1	2565437	1	22	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	CD2AP	6	47477789	47627263	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	CD2BP2	16	30350766	30355361	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	CD300A	17	74466399	74484796	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	CD300C	17	74541108	74546143	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	5	2	FALSE	DIPLOID	PASS
659_bTo_pair	CD300E	17	74609887	74623738	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	CD300LB	17	74521174	74531474	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	5	2	FALSE	DIPLOID	PASS
659_bTo_pair	CD300LD	17	74579365	74592283	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	CD300LF	17	74694311	74712978	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	CD300LG	17	43847148	43863629	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CD302	2	159768630	159798255	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CD320	19	8302127	8308356	FALSE	1132	-0.583194501817822	26	7916513	8843246	NA	2	NA	NA	2	NA	926733	NA	25	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CD33	19	51225064	51243860	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	CD34	1	207880972	207911402	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	CD36	7	80369575	80679277	FALSE	472	-0.726204175046439	19	80135196	80656534	0.365165917639896	1	0	0.365165917639896	1	0	521338	1	3	20	3	TRUE	HETLOSS	PASS
659_bTo_pair	CD37	19	49335171	49343335	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	CD38	4	15778275	15853230	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	9	0	FALSE	GAIN	PASS
659_bTo_pair	CD3D	11	118338954	118342744	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	CD3E	11	118304545	118316175	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	CD3EAP	19	45406209	45410766	FALSE	1183	-0.825302678997359	16	45373709	45406671	0.365165917639896	1	0	0.365165917639896	1	0	32962	1	2	11	1	TRUE	HETLOSS	PASS
659_bTo_pair	CD3G	11	118344344	118355161	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	CD4	12	6786858	6820808	FALSE	743	-0.145896859645485	51	6620180	6938488	0.365165917639896	3	NA	0.365165917639896	3	NA	318308	NA	20	11	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CD40	20	46118272	46129863	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	CD40LG	23	136648193	136660390	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CD44	11	35138870	35232402	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	CD46	1	207752057	207795513	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	CD47	3	108043094	108091862	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	12	0	FALSE	GAIN	PASS
659_bTo_pair	CD48	1	160678746	160711851	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CD5	11	61102395	61127852	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	13	0	FALSE	GAIN	PASS
659_bTo_pair	CD52	1	26317957	26320523	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	2	1	FALSE	DIPLOID	PASS
659_bTo_pair	CD53	1	110871188	110899928	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	CD55	1	207321376	207386804	FALSE	72	-0.634345269299765	26	207049716	207511604	NA	2	NA	NA	2	NA	461888	NA	7	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CD58	1	116514535	116571039	TRUE	38	1.41004551718641	88	116514838	116570964	0.364342740527346	17	NA	0.364342740527346	17	NA	56126	NA	1	11	0	FALSE	AMP	PASS
659_bTo_pair	CD59	11	33703010	33736491	FALSE	692	-0.391103687852083	35	32583952	33774394	1	2	1	1	2	1	1190442	1	13	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	CD5L	1	157830914	157898256	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	CD6	11	60971680	61020377	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	16	0	FALSE	GAIN	PASS
659_bTo_pair	CD63	12	55725323	55729707	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	CD68	17	7579467	7582113	FALSE	1000	-0.750226164220686	19	7324407	7655594	0.365165917639896	1	0	0.365165917639896	1	0	331187	1	31	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	CD69	12	9752486	9760901	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	CD7	17	82314868	82317602	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	CD70	19	6583183	6604103	FALSE	1127	1.79995309225966	98	6535069	6665009	0.364342740527346	23	NA	0.364342740527346	23	NA	129940	NA	3	8	0	FALSE	AMP	PASS
659_bTo_pair	CD72	9	35609533	35646810	FALSE	590	0.518634267342274	67	35107891	35683151	0.364342740527346	7	2	0.364342740527346	7	2	575260	5	11	10	1	FALSE	AMP	PASS
659_bTo_pair	CD74	5	150401637	150412929	FALSE	349	1.6376392216068	96	150401876	150412884	0.364342740527346	20	NA	0.364342740527346	20	NA	11008	NA	1	21	2	FALSE	AMP	PASS
659_bTo_pair	CD79A	19	41877120	41881372	FALSE	1177	-0.671885212726332	22	41354916	42250573	0.291335969972972	1	0	0.291335969972972	1	0	895657	1	32	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	CD79B	17	63928740	63932354	FALSE	1065	0.610950559170025	71	63880340	63941272	0.364342740527346	8	NA	0.364342740527346	8	NA	60932	NA	7	9	2	FALSE	INDETERMINATE	PASS
659_bTo_pair	CD80	3	119524293	119559602	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	7	0	FALSE	GAIN	PASS
659_bTo_pair	CD81	11	2376177	2397419	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	CD82	11	44564427	44620363	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	CD83	6	14117256	14136918	FALSE	369	2.31111026021588	110	13977567	14136667	0.364342740527346	34	NA	0.364342740527346	34	NA	159100	NA	2	12	2	FALSE	AMP	PASS
659_bTo_pair	CD84	1	160541095	160579516	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	CD86	3	122055366	122121139	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	9	0	FALSE	GAIN	PASS
659_bTo_pair	CD8A	2	86784610	86808396	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	CD8B	2	86815339	86861924	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	CD8B2	2	106487364	106544297	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	CD9	12	6199715	6238271	FALSE	741	-0.251609480735115	44	4489790	6567957	0.345317016959666	3	1	0.345317016959666	3	1	2078167	2	28	8	0	FALSE	GAIN	PASS
659_bTo_pair	CD93	20	23079349	23086340	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	CD96	3	111292719	111665750	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	19	1	FALSE	GAIN	PASS
659_bTo_pair	CD99L2	23	150766337	150898816	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	12	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	CDA	1	20588948	20618908	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	CDADC1	13	49247925	49293485	FALSE	835	-0.766581964775609	19	48490223	50953919	0.365165917639896	1	0	0.365165917639896	1	0	2463696	1	18	13	1	FALSE	HETLOSS	PASS
659_bTo_pair	CDAN1	15	42723544	42737128	FALSE	900	-0.777056562410308	17	42718512	43401817	0.365165917639896	1	0	0.365165917639896	1	0	683305	1	13	30	4	FALSE	HETLOSS	PASS
659_bTo_pair	CDC123	10	12195965	12250589	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	13	1	FALSE	CNLOH	PASS
659_bTo_pair	CDC14A	1	100345001	100520278	FALSE	32	-0.441874489475641	34	100273343	107324874	NA	2	NA	NA	2	NA	7051531	NA	18	18	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CDC14B	9	96490241	96619830	FALSE	608	-0.541405085979946	27	95522076	99069752	1	2	1	1	2	1	3547676	1	31	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	CDC14C	7	48919765	48927454	FALSE	465	0.0412518069674403	56	48245888	50159047	0.365165917639896	4	NA	0.365165917639896	4	NA	1913159	NA	5	6	3	FALSE	GAIN (many states)	PASS
659_bTo_pair	CDC16	13	114234887	114272723	FALSE	847	-0.795377433921418	16	114007524	114326263	0.365165917639896	1	0	0.365165917639896	1	0	318739	1	5	19	4	FALSE	HETLOSS	PASS
659_bTo_pair	CDC20	1	43358955	43363203	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	CDC20B	5	55112995	55173175	FALSE	319	-0.764156631411702	19	50399919	56556187	0.365165917639896	1	0	0.365165917639896	1	0	6156268	1	28	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	CDC23	5	138187648	138213343	FALSE	336	-0.752536733071469	19	135941639	138575278	0.365165917639896	1	0	0.365165917639896	1	0	2633639	1	24	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	CDC25A	3	48157146	48188402	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	CDC25B	20	3786772	3806121	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	18	1	FALSE	HETLOSS	PASS
659_bTo_pair	CDC25C	5	138285265	138338355	FALSE	336	-0.752536733071469	19	135941639	138575278	0.365165917639896	1	0	0.365165917639896	1	0	2633639	1	24	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	CDC26	9	113255835	113275589	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CDC27	17	47117703	47189422	FALSE	1046	-0.746772159255206	19	45395806	47696360	0.365165917639896	1	0	0.365165917639896	1	0	2300554	1	26	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	CDC34	19	531712	542092	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CDC37	19	10391134	10420121	FALSE	1139	-0.718742930681428	18	10252235	10467338	0.180216333675297	0	0	0.180216333675297	0	0	215103	0	13	12	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CDC37L1	9	4679559	4708398	FALSE	574	-0.919846303005392	13	2198627	4849539	0.365165917639896	1	0	0.365165917639896	1	0	2650912	1	11	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	CDC40	6	110180141	110254275	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	CDC42	1	22052627	22092946	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CDC42BPA	1	226989865	227318474	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	40	2	FALSE	HETLOSS	PASS
659_bTo_pair	CDC42BPB	14	102932379	103057462	FALSE	880	-0.612786833130899	26	102922742	103500099	NA	2	NA	NA	2	NA	577357	NA	7	38	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CDC42BPG	11	64823387	64844569	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	39	2	FALSE	GAIN	PASS
659_bTo_pair	CDC42EP1	22	37560447	37569405	FALSE	1263	-0.528184158498335	29	36991204	37967644	NA	2	NA	NA	2	NA	976440	NA	31	5	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CDC42EP2	11	65314818	65322429	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	3	0	FALSE	GAIN	PASS
659_bTo_pair	CDC42EP3	2	37641882	37738468	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	CDC42EP4	17	73283624	73312175	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	CDC42EP5	19	54465026	54473264	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	CDC42SE1	1	151050971	151070325	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	CDC42SE2	5	131245493	131398447	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	CDC45	22	19479459	19520612	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	19	2	FALSE	CNLOH	PASS
659_bTo_pair	CDC5L	6	44387525	44450426	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	19	2	FALSE	DIPLOID	PASS
659_bTo_pair	CDC6	17	40287633	40304657	FALSE	1031	1.71784444858934	97	40288030	40357572	0.364342740527346	21	NA	0.364342740527346	21	NA	69542	NA	2	22	2	FALSE	AMP	PASS
659_bTo_pair	CDC7	1	91500893	91525764	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	CDC73	1	193121800	193254815	TRUE	59	1.14102161198349	83	193105312	193254819	0.364342740527346	13	NA	0.364342740527346	13	NA	149507	NA	3	37	0	FALSE	AMP	PASS
659_bTo_pair	CDCA2	8	25458997	25507920	FALSE	520	-0.862302460890099	13	23703081	26040940	0.365165917639896	1	0	0.365165917639896	1	0	2337859	1	12	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	CDCA3	12	6844793	6852066	FALSE	743	-0.145896859645485	51	6620180	6938488	0.365165917639896	3	NA	0.365165917639896	3	NA	318308	NA	20	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CDCA4	14	105009573	105021148	FALSE	885	-0.488568816150345	30	104868462	105529782	1	2	1	1	2	1	661320	1	18	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	CDCA5	11	65066300	65084164	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	6	0	FALSE	GAIN	PASS
659_bTo_pair	CDCA7	2	173354820	173368997	FALSE	153	-0.469039793655258	34	172736055	177217715	NA	2	NA	NA	2	NA	4481660	NA	28	11	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CDCA7L	7	21900900	21946084	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	13	0	FALSE	GAIN	PASS
659_bTo_pair	CDCA8	1	37692418	37709719	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	CDCP1	3	45082278	45146422	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	CDCP2	1	54132968	54153770	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	CDH1	16	68737225	68835548	TRUE	980	1.20622892385685	84	68732393	68860244	0.364342740527346	14	NA	0.364342740527346	14	NA	127851	NA	2	35	1	FALSE	AMP	PASS
659_bTo_pair	CDH10	5	24487100	24644978	FALSE	312	-0.206081392785099	47	24487677	35857105	0.365165917639896	3	1	0.365165917639896	3	1	11369428	2	27	16	0	FALSE	GAIN	PASS
659_bTo_pair	CDH11	16	64943753	65126112	FALSE	972	-0.499158643645776	34	57931773	64947842	NA	2	NA	NA	2	NA	7016069	NA	18	18	4	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	CDH12	5	21750673	22853622	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	14	0	FALSE	GAIN	PASS
659_bTo_pair	CDH13	16	82626803	83800640	FALSE	987	-0.578642888038652	23	81999201	85806436	0.186356639256811	1	0	0.186356639256811	1	0	3807235	1	31	18	2	FALSE	HETLOSS	PASS
659_bTo_pair	CDH15	16	89171767	89195492	FALSE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	20	4	FALSE	HETLOSS	PASS
659_bTo_pair	CDH16	16	66908122	66918984	FALSE	973	-0.642771892390385	26	64948130	66912568	NA	2	NA	NA	2	NA	1964438	NA	17	18	2	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	CDH17	8	94127171	94217303	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	17	0	FALSE	GAIN	PASS
659_bTo_pair	CDH18	5	19472951	20575873	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	16	0	FALSE	GAIN	PASS
659_bTo_pair	CDH19	18	66501083	66604138	FALSE	1111	-0.872352968035647	12	63331800	74584528	0.365165917639896	1	0	0.365165917639896	1	0	11252728	1	31	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	CDH2	18	27950966	28177446	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	21	1	FALSE	GAIN	PASS
659_bTo_pair	CDH20	18	61333582	61555773	FALSE	1109	-0.86662286323735	13	60372339	62975524	0.365165917639896	1	0	0.365165917639896	1	0	2603185	1	8	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	CDH22	20	46173733	46308498	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	18	2	FALSE	DIPLOID	PASS
659_bTo_pair	CDH23	10	71396934	71815947	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	92	13	FALSE	CNLOH	PASS
659_bTo_pair	CDH24	14	23047062	23057538	FALSE	850	-0.604709518345526	26	22902059	23302562	NA	2	NA	NA	2	NA	400503	NA	18	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CDH26	20	59958427	60034011	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	CDH3	16	68636189	68722616	FALSE	979	-0.429457644119204	34	67645299	68698317	NA	2	NA	NA	2	NA	1053018	NA	33	17	4	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CDH4	20	61252426	61940617	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	22	2	FALSE	DIPLOID	PASS
659_bTo_pair	CDH5	16	66366622	66404786	FALSE	973	-0.642771892390385	26	64948130	66912568	NA	2	NA	NA	2	NA	1964438	NA	17	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CDH6	5	31193750	31329146	FALSE	312	-0.206081392785099	47	24487677	35857105	0.365165917639896	3	1	0.365165917639896	3	1	11369428	2	27	15	0	FALSE	GAIN	PASS
659_bTo_pair	CDH7	18	65750252	65890341	FALSE	1111	-0.872352968035647	12	63331800	74584528	0.365165917639896	1	0	0.365165917639896	1	0	11252728	1	31	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	CDH8	16	61647242	62037035	FALSE	972	-0.499158643645776	34	57931773	64947842	NA	2	NA	NA	2	NA	7016069	NA	18	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CDH9	5	26880600	27121150	FALSE	312	-0.206081392785099	47	24487677	35857105	0.365165917639896	3	1	0.365165917639896	3	1	11369428	2	27	16	0	FALSE	GAIN	PASS
659_bTo_pair	CDHR1	10	84194635	84219621	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	21	0	FALSE	CNLOH	PASS
659_bTo_pair	CDHR2	5	176542511	176595974	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	33	4	FALSE	HETLOSS	PASS
659_bTo_pair	CDHR3	7	105876796	106033773	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	22	2	FALSE	DIPLOID	PASS
659_bTo_pair	CDHR4	3	49790732	49799835	FALSE	220	-0.761977046834943	19	49697158	49862323	0.365165917639896	1	0	0.365165917639896	1	0	165165	1	9	18	2	FALSE	HETLOSS	PASS
659_bTo_pair	CDHR5	11	616565	626078	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	18	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CDIP1	16	4510675	4538828	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	CDIPT	16	29858357	29863736	FALSE	965	-0.735005669796309	19	28989573	29982749	0.365165917639896	1	0	0.365165917639896	1	0	993176	1	25	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	CDK1	10	60778331	60794852	FALSE	643	1.92483730111656	101	60778513	60794742	0.364342740527346	25	NA	0.364342740527346	25	NA	16229	NA	1	11	3	FALSE	AMP	PASS
659_bTo_pair	CDK10	16	89680737	89696364	FALSE	991	-0.654420383530572	22	89508463	89733977	0.291335969972972	1	0	0.291335969972972	1	0	225514	1	10	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	CDK11A	1	1702730	1724324	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	17	5	FALSE	DIPLOID	PASS
659_bTo_pair	CDK11B	1	1635227	1659012	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	16	3	FALSE	DIPLOID	PASS
659_bTo_pair	CDK12	17	39461511	39564907	TRUE	1025	1.61600486453513	93	39461614	39534459	0.364342740527346	20	NA	0.364342740527346	20	NA	72845	NA	1	41	0	TRUE	AMP	PASS
659_bTo_pair	CDK13	7	39949646	40099580	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	25	0	FALSE	GAIN	PASS
659_bTo_pair	CDK14	7	90466424	91210590	FALSE	479	-0.448308050861149	30	87602941	92590330	1	2	1	1	2	1	4987389	1	30	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	CDK15	2	201790461	201895550	FALSE	166	-0.425780118113581	30	201288659	203854096	1	2	1	1	2	1	2565437	1	22	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	CDK16	23	47217860	47229997	FALSE	1294	0.117878311449899	59	47198859	47467488	0.308533751035793	5	NA	0.308533751035793	5	NA	268629	NA	5	16	0	FALSE	AMP (many states)	PASS
659_bTo_pair	CDK17	12	96278261	96400560	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	CDK18	1	205504595	205532793	FALSE	66	-0.597189828646048	26	204618263	205619845	NA	2	NA	NA	2	NA	1001582	NA	13	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CDK19	6	110609978	110815958	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	CDK2	12	55966769	55972784	FALSE	775	1.74890363720142	98	55967038	55972797	0.364342740527346	22	NA	0.364342740527346	22	NA	5759	NA	2	11	0	FALSE	AMP	PASS
659_bTo_pair	CDK20	9	87966441	87974753	FALSE	604	-0.547885090101936	27	85547201	90613824	1	2	1	1	2	1	5066623	1	21	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	CDK2AP1	12	123260971	123272334	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	CDK2AP2	11	67506497	67508649	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	4	0	FALSE	GAIN	PASS
659_bTo_pair	CDK3	17	76000906	76005999	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	CDK4	12	57747727	57756013	FALSE	785	1.00272948497916	80	57748192	57766041	0.364342740527346	12	NA	0.364342740527346	12	NA	17849	NA	4	16	0	FALSE	AMP	PASS
659_bTo_pair	CDK5	7	151053812	151058530	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	CDK5R1	17	32486619	32491256	FALSE	1022	-0.670211431189836	22	32030679	35026358	0.291335969972972	1	0	0.291335969972972	1	0	2995679	1	23	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	CDK5R2	2	218959655	218962162	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	CDK5RAP1	20	33358839	33401561	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	CDK5RAP2	9	120388869	120580170	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	43	1	FALSE	DIPLOID	PASS
659_bTo_pair	CDK5RAP3	17	47967810	47981774	FALSE	1049	-0.703360644300681	22	47810585	48529853	0.291335969972972	1	0	0.291335969972972	1	0	719268	1	15	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	CDK6	7	92604921	92836594	FALSE	480	2.60990065457181	115	92600001	92615145	0.364342740527346	42	NA	0.364342740527346	42	NA	15144	NA	1	59	2	TRUE	AMP	PASS
659_bTo_pair	CDK7	5	69234795	69277430	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	CDK8	13	26254104	26405238	FALSE	824	-0.820211361281197	14	23365275	27988570	0.365165917639896	1	0	0.365165917639896	1	0	4623295	1	32	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	CDK9	9	127785679	127790787	FALSE	620	1.87638967343094	100	127786145	127790751	0.364342740527346	24	NA	0.364342740527346	24	NA	4606	NA	1	14	0	FALSE	AMP	PASS
659_bTo_pair	CDKAL1	6	20534457	21232404	FALSE	372	-0.417452461149977	39	20546469	24145837	NA	2	NA	NA	2	NA	3599368	NA	5	14	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CDKL1	14	50329404	50416461	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	CDKL2	4	75578005	75630716	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	CDKL3	5	134286350	134371047	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	CDKL4	2	39175646	39229588	FALSE	104	-0.491151156674762	34	39178660	42057603	NA	2	NA	NA	2	NA	2878943	NA	7	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CDKL5	23	18425583	18653629	FALSE	1276	0.0763243231691416	59	15827382	20064777	0.308533751035793	5	NA	0.308533751035793	5	NA	4237395	NA	24	27	0	FALSE	AMP (many states)	PASS
659_bTo_pair	CDKN1A	6	36676460	36687339	TRUE	393	-0.47521086997284	30	35476361	36677919	1	2	1	1	2	1	1201558	1	21	15	3	TRUE	DIPLOID	PASS
659_bTo_pair	CDKN1B	12	12715058	12722371	TRUE	752	2.18846807570076	108	12714026	12724109	0.364342740527346	31	NA	0.364342740527346	31	NA	10083	NA	1	17	1	FALSE	AMP	PASS
659_bTo_pair	CDKN1C	11	2883213	2885773	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	CDKN2A	9	21967753	21995301	TRUE	584	1.73797883665214	97	21854736	22012013	0.364342740527346	22	NA	0.364342740527346	22	NA	157277	NA	4	20	0	FALSE	AMP	PASS
659_bTo_pair	CDKN2AIP	4	183444591	183448198	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	CDKN2AIPNL	5	134402087	134411898	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	CDKN2B	9	22002903	22009363	TRUE	584	1.73797883665214	97	21854736	22012013	0.364342740527346	22	NA	0.364342740527346	22	NA	157277	NA	4	17	1	FALSE	AMP	PASS
659_bTo_pair	CDKN2C	1	50960745	50974633	TRUE	18	1.20081926264103	84	50959219	50979692	0.364342740527346	14	NA	0.364342740527346	14	NA	20473	NA	2	19	0	FALSE	AMP	PASS
659_bTo_pair	CDKN2D	19	10566462	10569059	FALSE	1141	-0.578703281933348	26	10514217	10929669	NA	2	NA	NA	2	NA	415452	NA	14	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CDKN3	14	54396849	54420218	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	CDNF	10	14819250	14838575	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	5	0	FALSE	CNLOH	PASS
659_bTo_pair	CDO1	5	115804733	115816954	FALSE	331	-0.706980197323045	20	112861366	122075379	0.365165917639896	1	0	0.365165917639896	1	0	9214013	1	31	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	CDON	11	125955796	126063335	FALSE	732	-0.497254377564454	34	125672754	127000522	NA	2	NA	NA	2	NA	1327768	NA	19	26	4	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CDPF1	22	46244011	46250679	FALSE	1271	-0.350898193716427	41	45922979	50285791	0.284729887459054	3	0	0.284729887459054	3	0	4362812	3	30	3	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	CDR1	23	140783578	140784366	FALSE	1338	0.767200084690243	74	139931991	141176986	0.364342740527346	9	NA	0.364342740527346	9	NA	1244995	NA	6	4	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	CDR2	16	22345936	22437165	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	CDR2L	17	74987632	75005800	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	CDRT1	17	15565483	15619512	FALSE	1009	-0.493836167698037	33	12666172	16027364	0.344071079426502	2	0	0.344071079426502	2	0	3361192	2	21	15	0	FALSE	CNLOH	PASS
659_bTo_pair	CDRT15	17	14235673	14236862	FALSE	1009	-0.493836167698037	33	12666172	16027364	0.344071079426502	2	0	0.344071079426502	2	0	3361192	2	21	4	2	FALSE	CNLOH	PASS
659_bTo_pair	CDRT15L2	17	20579724	20580911	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	4	0	FALSE	CNLOH	PASS
659_bTo_pair	CDRT4	17	15436015	15503608	FALSE	1009	-0.493836167698037	33	12666172	16027364	0.344071079426502	2	0	0.344071079426502	2	0	3361192	2	21	5	0	FALSE	CNLOH	PASS
659_bTo_pair	CDS1	4	84582979	84651338	FALSE	291	-0.458701040497953	34	83536708	87613131	NA	2	NA	NA	2	NA	4076423	NA	17	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CDS2	20	5126786	5197887	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	CDSN	6	31115090	31120446	FALSE	379	-0.524744136561063	27	30546321	31270541	1	2	1	1	2	1	724220	1	30	7	4	FALSE	DIPLOID	PASS
659_bTo_pair	CDT1	16	88803213	88809258	FALSE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	CDV3	3	133573730	133590261	FALSE	242	-0.32037413513609	40	130560427	134790274	0.308149309490068	3	1	0.308149309490068	3	1	4229847	2	29	7	0	FALSE	GAIN	PASS
659_bTo_pair	CDX1	5	150166795	150184558	FALSE	348	-0.944402178600545	11	150166869	150399003	0.289956079954009	0	0	0.289956079954009	0	0	232134	0	5	5	0	FALSE	HOMDEL	PASS
659_bTo_pair	CDX2	13	27962137	27971139	FALSE	824	-0.820211361281197	14	23365275	27988570	0.365165917639896	1	0	0.365165917639896	1	0	4623295	1	32	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	CDX4	23	73447254	73455245	FALSE	1317	0.217996879888221	62	71533297	76176924	0.364342740527346	5	NA	0.364342740527346	5	NA	4643627	NA	35	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	CDYL	6	4706159	4955551	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	CDYL2	16	80597906	80804329	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	CEACAM1	19	42507304	42561234	FALSE	1179	-0.582084941516902	26	42297317	43535595	NA	2	NA	NA	2	NA	1238278	NA	25	13	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CEACAM16	19	44699151	44710714	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	CEACAM18	19	51478622	51490952	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	9	3	FALSE	HETLOSS	PASS
659_bTo_pair	CEACAM19	19	44662278	44684359	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	CEACAM20	19	44501677	44529788	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	16	1	FALSE	HETLOSS	PASS
659_bTo_pair	CEACAM21	19	41549518	41586844	FALSE	1177	-0.671885212726332	22	41354916	42250573	0.291335969972972	1	0	0.291335969972972	1	0	895657	1	32	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	CEACAM3	19	41796437	41811553	FALSE	1177	-0.671885212726332	22	41354916	42250573	0.291335969972972	1	0	0.291335969972972	1	0	895657	1	32	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	CEACAM4	19	41618971	41627074	FALSE	1177	-0.671885212726332	22	41354916	42250573	0.291335969972972	1	0	0.291335969972972	1	0	895657	1	32	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	CEACAM5	19	41708585	41729798	FALSE	1177	-0.671885212726332	22	41354916	42250573	0.291335969972972	1	0	0.291335969972972	1	0	895657	1	32	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	CEACAM6	19	41750977	41772208	FALSE	1177	-0.671885212726332	22	41354916	42250573	0.291335969972972	1	0	0.291335969972972	1	0	895657	1	32	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	CEACAM7	19	41673307	41706976	FALSE	1177	-0.671885212726332	22	41354916	42250573	0.291335969972972	1	0	0.291335969972972	1	0	895657	1	32	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	CEACAM8	19	42580241	42595055	FALSE	1179	-0.582084941516902	26	42297317	43535595	NA	2	NA	NA	2	NA	1238278	NA	25	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CEBPA	19	33299934	33302564	TRUE	1166	0.83138194360177	75	33295903	33391322	0.364342740527346	10	NA	0.364342740527346	10	NA	95419	NA	3	10	0	FALSE	AMP	PASS
659_bTo_pair	CEBPB	20	50190734	50192689	FALSE	1216	-0.465272765977354	30	47658376	50278257	1	2	1	1	2	1	2619881	1	18	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	CEBPD	8	47736909	47739086	FALSE	542	0.757621520920055	74	47737305	47962299	0.364342740527346	9	NA	0.364342740527346	9	NA	224994	NA	3	3	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	CEBPE	14	23117304	23119616	FALSE	850	-0.604709518345526	26	22902059	23302562	NA	2	NA	NA	2	NA	400503	NA	18	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CEBPG	19	33373330	33382686	FALSE	1166	0.83138194360177	75	33295903	33391322	0.364342740527346	10	NA	0.364342740527346	10	NA	95419	NA	3	2	0	FALSE	AMP	PASS
659_bTo_pair	CEBPZ	2	37201612	37231713	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	22	3	FALSE	DIPLOID	PASS
659_bTo_pair	CEBPZOS	2	37196488	37216193	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	CECR2	22	17359949	17558149	FALSE	1240	-0.594689860601271	26	15528179	18606839	NA	2	NA	NA	2	NA	3078660	NA	21	27	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CEL	9	133061978	133071861	FALSE	627	-0.867007674319489	12	132986776	134157867	0.365165917639896	1	0	0.365165917639896	1	0	1171091	1	28	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	CELA1	12	51328443	51346679	FALSE	772	-0.61197679162419	26	50109466	51920864	NA	2	NA	NA	2	NA	1811398	NA	27	8	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CELA2A	1	15456728	15472091	FALSE	6	-0.41295085321191	39	13779356	15847467	NA	2	NA	NA	2	NA	2068111	NA	18	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CELA2B	1	15465909	15491400	FALSE	6	-0.41295085321191	39	13779356	15847467	NA	2	NA	NA	2	NA	2068111	NA	18	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CELA3A	1	22001656	22012539	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	CELA3B	1	21977021	21998642	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	CELF1	11	47465933	47565569	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	CELF2	10	10798397	11336675	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	19	0	FALSE	CNLOH	PASS
659_bTo_pair	CELF3	1	151702404	151716814	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	13	3	FALSE	DIPLOID	PASS
659_bTo_pair	CELF4	18	37243047	37566037	FALSE	1096	-1.21893607076254	6	36730705	37565641	0.365165917639896	0	0	0.365165917639896	0	0	834936	0	4	17	1	FALSE	HOMDEL	PASS
659_bTo_pair	CELF5	19	3224703	3297076	FALSE	1122	-0.653400653967241	21	3157829	4037863	0.140309795179477	0	0	0.140309795179477	0	0	880034	0	27	13	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CELF6	15	72284727	72320129	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	CELSR1	22	46360834	46537170	FALSE	1271	-0.350898193716427	41	45922979	50285791	0.284729887459054	3	0	0.284729887459054	3	0	4362812	3	30	57	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	CELSR2	1	109250019	109275750	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	52	3	FALSE	HETLOSS	PASS
659_bTo_pair	CELSR3	3	48636469	48662915	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	57	5	FALSE	HETLOSS	PASS
659_bTo_pair	CEMIP	15	80779343	80951776	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	30	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CEMIP2	9	71683366	71816690	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	26	2	FALSE	DIPLOID	PASS
659_bTo_pair	CEMP1	16	2530035	2531417	FALSE	942	-0.803500535593988	16	2178660	2530995	0.365165917639896	1	0	0.365165917639896	1	0	352335	1	18	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	CEND1	11	787104	790123	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	2	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CENPA	2	26764289	26801067	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	CENPB	20	3783851	3786690	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	CENPBD1	16	89969773	89972832	FALSE	995	-0.522225769981002	29	89949539	90075863	NA	2	NA	NA	2	NA	126324	NA	5	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CENPC	4	67468748	67545606	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	24	0	FALSE	DIPLOID	PASS
659_bTo_pair	CENPE	4	103105806	103198409	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	60	0	FALSE	DIPLOID	PASS
659_bTo_pair	CENPF	1	214603195	214664588	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	46	0	FALSE	DIPLOID	PASS
659_bTo_pair	CENPH	5	69189548	69210357	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	CENPI	23	101098218	101163681	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	21	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	CENPJ	13	24882284	24922889	FALSE	824	-0.820211361281197	14	23365275	27988570	0.365165917639896	1	0	0.365165917639896	1	0	4623295	1	32	24	0	FALSE	HETLOSS	PASS
659_bTo_pair	CENPK	5	65517766	65563171	FALSE	323	-0.645106866010582	25	58495036	67196614	0.365165917639896	1	0	0.365165917639896	1	0	8701578	1	31	10	2	FALSE	HETLOSS	PASS
659_bTo_pair	CENPL	1	173799550	173824720	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	CENPM	22	41938721	41947164	FALSE	1269	-0.443951758803067	34	41205309	42514754	NA	2	NA	NA	2	NA	1309445	NA	31	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CENPN	16	81006498	81033114	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	12	3	FALSE	DIPLOID	PASS
659_bTo_pair	CENPO	2	24793136	24822376	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	10	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CENPP	9	92325484	92620533	FALSE	606	-0.547644280946133	27	91214370	95094057	1	2	1	1	2	1	3879687	1	31	49	0	FALSE	DIPLOID	PASS
659_bTo_pair	CENPQ	6	49463378	49493107	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	CENPS	1	10430443	10442809	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CENPS-CORT	1	10430102	10452153	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	CENPT	16	67828157	67847811	FALSE	979	-0.429457644119204	34	67645299	68698317	NA	2	NA	NA	2	NA	1053018	NA	33	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CENPU	4	184694618	184734133	FALSE	305	-0.853036814117495	12	184629284	186555336	0.365165917639896	1	0	0.365165917639896	1	0	1926052	1	22	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	CENPV	17	16342534	16353656	FALSE	1012	-0.646922995033775	26	16234077	17184849	NA	2	NA	NA	2	NA	950772	NA	11	6	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CENPVL3	23	51617024	51618968	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	2	0	FALSE	AMP (many states)	PASS
659_bTo_pair	CENPW	6	126340174	126348875	FALSE	421	-0.534093125771784	29	117482879	126348569	NA	2	NA	NA	2	NA	8865690	NA	29	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CENPX	17	82018702	82024107	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	CEP104	1	3812081	3857214	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	21	5	FALSE	DIPLOID	PASS
659_bTo_pair	CEP112	17	65635538	66192084	FALSE	1070	-0.476939588153593	30	65635933	68457397	1	2	1	1	2	1	2821464	1	18	27	1	FALSE	DIPLOID	PASS
659_bTo_pair	CEP120	5	123344885	123423592	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	23	3	FALSE	HETLOSS	PASS
659_bTo_pair	CEP126	11	101915015	102001058	FALSE	719	-0.636863435721755	26	101453066	102083149	NA	2	NA	NA	2	NA	630083	NA	4	20	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CEP128	14	80476983	80959517	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	28	0	TRUE	DIPLOID	PASS
659_bTo_pair	CEP131	17	81189593	81222999	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	27	1	FALSE	DIPLOID	PASS
659_bTo_pair	CEP135	4	55948871	56033363	FALSE	285	-0.676685623676823	22	55346376	64409389	0.291335969972972	1	0	0.291335969972972	1	0	9063013	1	23	25	0	FALSE	HETLOSS	PASS
659_bTo_pair	CEP152	15	48712928	48811146	FALSE	904	-0.666047806656427	20	44736698	49422632	0.365165917639896	1	0	0.365165917639896	1	0	4685934	1	30	33	1	FALSE	HETLOSS	PASS
659_bTo_pair	CEP162	6	84124241	84227635	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	32	1	FALSE	DIPLOID	PASS
659_bTo_pair	CEP164	11	117314557	117413268	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	36	5	FALSE	HETLOSS	PASS
659_bTo_pair	CEP170	1	243124428	243255348	FALSE	84	-0.392646983169906	39	241532515	243426393	NA	2	NA	NA	2	NA	1893878	NA	10	29	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CEP170B	14	104865280	104896770	FALSE	885	-0.488568816150345	30	104868462	105529782	1	2	1	1	2	1	661320	1	18	29	0	FALSE	DIPLOID	PASS
659_bTo_pair	CEP19	3	196706277	196712293	FALSE	271	-0.194588974812627	47	196198492	198169864	0.365165917639896	3	1	0.365165917639896	3	1	1971372	2	29	3	1	FALSE	GAIN	PASS
659_bTo_pair	CEP192	18	12991362	13125052	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	53	3	FALSE	GAIN	PASS
659_bTo_pair	CEP250	20	35455164	35519280	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	45	0	FALSE	DIPLOID	PASS
659_bTo_pair	CEP290	12	88049014	88142216	FALSE	794	-0.258431968401282	46	85301316	91178343	0.298322295679939	3	NA	0.298322295679939	3	NA	5877027	NA	19	57	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CEP295	11	93661639	93730358	FALSE	715	-0.44311716102168	34	90214063	94410681	NA	2	NA	NA	2	NA	4196618	NA	16	44	5	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CEP295NL	17	78870910	78903217	FALSE	1080	-0.537824093701074	27	76741010	78870935	1	2	1	1	2	1	2129925	1	20	10	1	TRUE	DIPLOID	PASS
659_bTo_pair	CEP350	1	179954738	180114880	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	53	6	FALSE	DIPLOID	PASS
659_bTo_pair	CEP41	7	130393771	130442433	FALSE	494	-0.536776174448359	29	129225418	130685270	NA	2	NA	NA	2	NA	1459852	NA	17	12	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CEP44	4	174283677	174333380	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	CEP55	10	93496632	93529092	FALSE	662	-0.410954559094016	36	89715119	94762760	0.365165917639896	2	0	0.365165917639896	2	0	5047641	2	33	10	0	FALSE	CNLOH	PASS
659_bTo_pair	CEP57	11	95789965	95832693	FALSE	717	-0.427991611956568	34	94512673	100992623	NA	2	NA	NA	2	NA	6479950	NA	19	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CEP57L1	6	109095110	109163932	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	CEP63	3	134485721	134575017	FALSE	242	-0.32037413513609	40	130560427	134790274	0.308149309490068	3	1	0.308149309490068	3	1	4229847	2	29	16	0	FALSE	GAIN	PASS
659_bTo_pair	CEP68	2	65056366	65087004	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	CEP70	3	138494344	138594538	FALSE	244	-0.465451876797886	34	136855703	138629155	NA	2	NA	NA	2	NA	1773452	NA	14	18	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CEP72	5	612272	667168	FALSE	308	-0.255094097331532	44	92297	1246091	0.345317016959666	3	1	0.345317016959666	3	1	1153794	2	18	16	1	FALSE	GAIN	PASS
659_bTo_pair	CEP76	18	12661833	12702777	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	14	0	FALSE	GAIN	PASS
659_bTo_pair	CEP78	9	78236062	78279690	FALSE	598	-0.546497547865564	29	78236395	83956411	NA	2	NA	NA	2	NA	5720016	NA	14	18	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CEP83	12	94306449	94459988	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	15	2	FALSE	DIPLOID	PASS
659_bTo_pair	CEP85	1	26234200	26278808	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	CEP85L	6	118460772	118710075	FALSE	421	-0.534093125771784	29	117482879	126348569	NA	2	NA	NA	2	NA	8865690	NA	29	20	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CEP89	19	32875925	32971991	FALSE	1165	-0.570153591761829	23	29923697	33225768	0.186356639256811	1	0	0.186356639256811	1	0	3302071	1	18	19	3	FALSE	HETLOSS	PASS
659_bTo_pair	CEP95	17	64506588	64542461	FALSE	1066	-0.447707994366894	34	63941413	64859452	NA	2	NA	NA	2	NA	918039	NA	12	20	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CEP97	3	101723925	101770562	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	16	0	FALSE	GAIN	PASS
659_bTo_pair	CEPT1	1	111139627	111185102	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	CER1	9	14719724	14722717	FALSE	581	-0.746183084602222	19	10618009	19786745	0.365165917639896	1	0	0.365165917639896	1	0	9168736	1	24	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	CERCAM	9	128411751	128437351	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	13	1	FALSE	HETLOSS	PASS
659_bTo_pair	CERK	22	46684411	46738261	FALSE	1271	-0.350898193716427	41	45922979	50285791	0.284729887459054	3	0	0.284729887459054	3	0	4362812	3	30	13	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	CERKL	2	181536676	181680665	FALSE	156	1.33033501129802	87	181457339	181539175	0.364342740527346	15	NA	0.364342740527346	15	NA	81836	NA	2	29	3	TRUE	AMP	PASS
659_bTo_pair	CERS1	19	18868545	18896727	FALSE	1159	-0.165917001507678	49	18177228	19138502	0.365165917639896	3	1	0.365165917639896	3	1	961274	2	36	13	2	FALSE	GAIN	PASS
659_bTo_pair	CERS2	1	150960583	150975004	FALSE	48	0.944067476880734	78	150926494	150964670	0.364342740527346	11	NA	0.364342740527346	11	NA	38176	NA	2	22	0	TRUE	AMP	PASS
659_bTo_pair	CERS3	15	100400395	100544995	FALSE	933	-0.918772702357227	12	98968746	101922991	0.365165917639896	1	0	0.365165917639896	1	0	2954245	1	21	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	CERS4	19	8206736	8262421	FALSE	1132	-0.583194501817822	26	7916513	8843246	NA	2	NA	NA	2	NA	926733	NA	25	10	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CERS5	12	50129306	50167533	FALSE	772	-0.61197679162419	26	50109466	51920864	NA	2	NA	NA	2	NA	1811398	NA	27	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CERS6	2	168455862	168775137	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	CES1	16	55802851	55833337	FALSE	968	-0.505434692233225	30	51151209	56683230	1	2	1	1	2	1	5532021	1	34	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	CES2	16	66934444	66945096	FALSE	974	-0.455513775034755	34	66912726	67009122	NA	2	NA	NA	2	NA	96396	NA	6	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CES3	16	66961237	66975148	FALSE	974	-0.455513775034755	34	66912726	67009122	NA	2	NA	NA	2	NA	96396	NA	6	14	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CES4A	16	66988589	67009758	FALSE	974	-0.455513775034755	34	66912726	67009122	NA	2	NA	NA	2	NA	96396	NA	6	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CES5A	16	55846154	55956031	FALSE	968	-0.505434692233225	30	51151209	56683230	1	2	1	1	2	1	5532021	1	34	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	CETN1	18	580357	582114	FALSE	1087	-0.181907359287398	48	580498	712613	0.365165917639896	3	NA	0.365165917639896	3	NA	132115	NA	4	2	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CETN2	23	152826973	152830777	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	5	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	CETN3	5	90392261	90409786	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	CETP	16	56961850	56983845	FALSE	970	-0.446547319806241	34	56865490	57067828	NA	2	NA	NA	2	NA	202338	NA	4	17	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CFAP100	3	126394939	126436556	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	17	1	FALSE	GAIN	PASS
659_bTo_pair	CFAP126	1	161364731	161367874	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	CFAP157	9	127706989	127716002	FALSE	619	-0.820686000870706	14	125203036	127778681	0.365165917639896	1	0	0.365165917639896	1	0	2575645	1	23	18	1	FALSE	HETLOSS	PASS
659_bTo_pair	CFAP161	15	81007033	81149175	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	9	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CFAP20	16	58113588	58129450	FALSE	972	-0.499158643645776	34	57931773	64947842	NA	2	NA	NA	2	NA	7016069	NA	18	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CFAP206	6	87407983	87464465	FALSE	407	-0.739487270214454	18	87337082	88963417	0.180216333675297	0	0	0.180216333675297	0	0	1626335	0	11	13	4	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CFAP221	2	119544432	119662251	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	23	3	FALSE	DIPLOID	PASS
659_bTo_pair	CFAP298	21	32592079	32612866	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	CFAP299	4	80335720	80963756	FALSE	289	-0.397475195823872	39	80335777	83458331	NA	2	NA	NA	2	NA	3122554	NA	19	7	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CFAP300	11	102047443	102084560	FALSE	719	-0.636863435721755	26	101453066	102083149	NA	2	NA	NA	2	NA	630083	NA	4	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CFAP36	2	55519604	55545879	FALSE	112	-0.500204609420994	34	55349629	58154733	NA	2	NA	NA	2	NA	2805104	NA	7	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CFAP410	21	44328944	44339402	FALSE	1236	-0.500794339727727	30	44229616	44592452	1	2	1	1	2	1	362836	1	14	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	CFAP43	10	104129888	104232362	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	39	0	FALSE	CNLOH	PASS
659_bTo_pair	CFAP44	3	113286947	113441610	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	37	4	FALSE	GAIN	PASS
659_bTo_pair	CFAP45	1	159872364	159900163	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	CFAP46	10	132808392	132942823	FALSE	676	-0.612597388333807	25	132187132	133626712	0.365165917639896	1	0	0.365165917639896	1	0	1439580	1	27	61	2	FALSE	HETLOSS	PASS
659_bTo_pair	CFAP47	23	35919734	36385319	FALSE	1284	0.036234673015801	56	35802678	36367063	0.365165917639896	4	NA	0.365165917639896	4	NA	564385	NA	2	68	0	TRUE	GAIN (many states)	PASS
659_bTo_pair	CFAP52	17	9576627	9643459	FALSE	1006	-0.894220729735546	12	8370429	10825247	0.365165917639896	1	0	0.365165917639896	1	0	2454818	1	31	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	CFAP53	18	50227193	50266522	FALSE	1103	-0.712987700962632	19	48029643	51023578	0.365165917639896	1	0	0.365165917639896	1	0	2993935	1	20	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	CFAP54	12	96489571	96875555	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	68	8	FALSE	DIPLOID	PASS
659_bTo_pair	CFAP57	1	43172149	43254358	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	29	0	FALSE	DIPLOID	PASS
659_bTo_pair	CFAP58	10	104353764	104455090	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	20	0	FALSE	CNLOH	PASS
659_bTo_pair	CFAP61	20	20052514	20360702	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	32	1	FALSE	DIPLOID	PASS
659_bTo_pair	CFAP65	2	219002846	219041527	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	42	2	FALSE	HETLOSS	PASS
659_bTo_pair	CFAP69	7	90245174	90311063	FALSE	479	-0.448308050861149	30	87602941	92590330	1	2	1	1	2	1	4987389	1	30	25	0	FALSE	DIPLOID	PASS
659_bTo_pair	CFAP70	10	73253759	73358859	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	27	0	FALSE	CNLOH	PASS
659_bTo_pair	CFAP73	12	113149858	113159276	FALSE	806	-0.481242901669781	30	113099979	114403736	1	2	1	1	2	1	1303757	1	13	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	CFAP74	1	1921951	2003837	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	39	1	FALSE	DIPLOID	PASS
659_bTo_pair	CFAP77	9	132410043	132573317	FALSE	625	-0.794391185935477	14	131261330	132889947	0.365165917639896	1	0	0.365165917639896	1	0	1628617	1	17	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	CFAP97	4	185159665	185209504	FALSE	305	-0.853036814117495	12	184629284	186555336	0.365165917639896	1	0	0.365165917639896	1	0	1926052	1	22	9	3	FALSE	HETLOSS	PASS
659_bTo_pair	CFAP97D1	17	43780435	43787612	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CFAP99	4	2418974	2462942	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	17	0	FALSE	GAIN	PASS
659_bTo_pair	CFB	6	31945650	31952084	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	18	1	FALSE	HETLOSS	PASS
659_bTo_pair	CFC1	2	130592168	130599575	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	CFD	19	859643	863630	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	6	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CFDP1	16	75293698	75433485	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	CFH	1	196651878	196747504	FALSE	60	-0.443336911293225	30	196228264	201209660	1	2	1	1	2	1	4981396	1	29	23	4	FALSE	DIPLOID	PASS
659_bTo_pair	CFHR1	1	196819757	196832189	FALSE	60	-0.443336911293225	30	196228264	201209660	1	2	1	1	2	1	4981396	1	29	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	CFHR2	1	196943756	196959226	FALSE	60	-0.443336911293225	30	196228264	201209660	1	2	1	1	2	1	4981396	1	29	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	CFHR3	1	196774795	196795406	FALSE	60	-0.443336911293225	30	196228264	201209660	1	2	1	1	2	1	4981396	1	29	7	2	FALSE	DIPLOID	PASS
659_bTo_pair	CFHR4	1	196888014	196918713	FALSE	60	-0.443336911293225	30	196228264	201209660	1	2	1	1	2	1	4981396	1	29	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	CFHR5	1	196977556	197009674	FALSE	60	-0.443336911293225	30	196228264	201209660	1	2	1	1	2	1	4981396	1	29	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	CFI	4	109740694	109802179	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	CFL1	11	65823022	65862026	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	20	0	FALSE	GAIN	PASS
659_bTo_pair	CFL2	14	34706769	34714823	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	CFLAR	2	201116104	201176687	FALSE	164	-0.381871160033202	39	198084145	201228955	NA	2	NA	NA	2	NA	3144810	NA	19	14	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CFP	23	47623172	47630305	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	11	0	FALSE	AMP (many states)	PASS
659_bTo_pair	CFTR	7	117465784	117715971	FALSE	490	-0.576498321273708	26	116888215	124790543	NA	2	NA	NA	2	NA	7902328	NA	33	35	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CGA	6	87085498	87095406	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	CGAS	6	73413515	73452276	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	14	2	FALSE	DIPLOID	PASS
659_bTo_pair	CGB1	19	49035610	49036895	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	CGB2	19	49031912	49033238	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	CGB3	19	49022869	49024333	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	CGB5	19	49043884	49045311	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	CGB7	19	49054275	49058860	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	4	2	FALSE	HETLOSS	PASS
659_bTo_pair	CGB8	19	49047638	49049106	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	CGGBP1	3	88051944	88149885	FALSE	232	-0.785224171872638	14	72888305	88156485	0.365165917639896	1	0	0.365165917639896	1	0	15268180	1	18	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	CGN	1	151510510	151538692	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	24	3	FALSE	DIPLOID	PASS
659_bTo_pair	CGNL1	15	57375967	57550727	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	24	1	FALSE	HETLOSS	PASS
659_bTo_pair	CGREF1	2	27098889	27119115	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	CGRRF1	14	54509812	54539309	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	CH25H	10	89205629	89207314	FALSE	660	-0.0564321858974841	55	89034693	89433298	0.328696605851359	4	NA	0.328696605851359	4	NA	398605	NA	8	4	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	CHAC1	15	40952962	40956519	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	CHAC2	2	53767792	53775196	FALSE	110	-0.435434252584523	30	48441014	54599245	1	2	1	1	2	1	6158231	1	18	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	CHAD	17	50464496	50468966	FALSE	1053	-0.561829441831031	26	49646906	50626743	NA	2	NA	NA	2	NA	979837	NA	25	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CHADL	22	41229510	41240934	FALSE	1269	-0.443951758803067	34	41205309	42514754	NA	2	NA	NA	2	NA	1309445	NA	31	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CHAF1A	19	4402662	4445018	FALSE	1124	-0.62008955817668	23	4168484	5151543	0.186356639256811	1	0	0.186356639256811	1	0	983059	1	28	20	1	FALSE	HETLOSS	PASS
659_bTo_pair	CHAF1B	21	36385378	36419015	FALSE	1228	-0.430637379115077	30	36009679	38367602	1	2	1	1	2	1	2357923	1	17	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	CHAMP1	13	114314335	114337626	FALSE	847	-0.795377433921418	16	114007524	114326263	0.365165917639896	1	0	0.365165917639896	1	0	318739	1	5	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	CHAT	10	49609095	49665104	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	25	2	FALSE	CNLOH	PASS
659_bTo_pair	CHCHD1	10	73782047	73783652	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	3	0	FALSE	CNLOH	PASS
659_bTo_pair	CHCHD10	22	23765834	23768443	FALSE	1252	-0.948790128902656	11	23317677	23779437	0.289956079954009	0	0	0.289956079954009	0	0	461760	0	9	5	1	FALSE	HOMDEL	PASS
659_bTo_pair	CHCHD2	7	56101569	56106576	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	CHCHD3	7	132784868	133082088	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	CHCHD4	3	14112077	14124870	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	CHCHD5	2	112584240	112589275	FALSE	138	-0.423459519967032	34	112060069	113201423	NA	2	NA	NA	2	NA	1141354	NA	21	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CHCHD6	3	126704220	126960406	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	8	0	FALSE	GAIN	PASS
659_bTo_pair	CHCHD7	8	56211686	56218798	FALSE	548	-0.313898052002086	43	56168306	58659618	0.192136715055622	3	NA	0.192136715055622	3	NA	2491312	NA	10	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CHD1	5	98853985	98928957	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	40	0	FALSE	HETLOSS	PASS
659_bTo_pair	CHD1L	1	147242641	147295766	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	23	3	FALSE	DIPLOID	PASS
659_bTo_pair	CHD2	15	92900189	93028005	FALSE	930	1.18567329271683	84	92900289	93052530	0.364342740527346	14	NA	0.364342740527346	14	NA	152241	NA	3	61	1	FALSE	AMP	PASS
659_bTo_pair	CHD3	17	7884806	7912760	FALSE	1002	-0.806633716627379	14	7689340	8047671	0.365165917639896	1	0	0.365165917639896	1	0	358331	1	15	42	1	FALSE	HETLOSS	PASS
659_bTo_pair	CHD4	12	6570082	6614524	FALSE	742	1.64682717318945	96	6570172	6608398	0.364342740527346	20	NA	0.364342740527346	20	NA	38226	NA	2	49	0	FALSE	AMP	PASS
659_bTo_pair	CHD5	1	6101793	6180123	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	46	1	FALSE	DIPLOID	PASS
659_bTo_pair	CHD6	20	41402101	41618494	FALSE	1207	-0.45870607109039	34	41137791	42067755	NA	2	NA	NA	2	NA	929964	NA	5	50	4	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CHD7	8	60678778	60868028	FALSE	550	-0.186881774239562	48	60208949	67746087	0.365165917639896	3	NA	0.365165917639896	3	NA	7537138	NA	33	51	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	CHD8	14	21385194	21456126	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	48	1	FALSE	DIPLOID	PASS
659_bTo_pair	CHD9	16	53055033	53329150	FALSE	968	-0.505434692233225	30	51151209	56683230	1	2	1	1	2	1	5532021	1	34	55	1	FALSE	DIPLOID	PASS
659_bTo_pair	CHDH	3	53812335	53846390	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	10	2	FALSE	HETLOSS	PASS
659_bTo_pair	CHEK1	11	125625136	125676255	TRUE	731	1.31119965101968	86	125625759	125668228	0.364342740527346	15	NA	0.364342740527346	15	NA	42469	NA	1	31	2	TRUE	AMP	PASS
659_bTo_pair	CHEK2	22	28687743	28742422	TRUE	1255	0.261638839895489	63	28687966	29044744	0.364342740527346	6	NA	0.364342740527346	6	NA	356778	NA	5	30	2	FALSE	AMP (many states)	PASS
659_bTo_pair	CHERP	19	16517889	16542530	FALSE	1154	-0.533888138892061	27	16361883	17271664	1	2	1	1	2	1	909781	1	23	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	CHFR	12	132822187	132956304	FALSE	818	-0.324030199616913	43	132687628	133234369	0.192136715055622	3	NA	0.192136715055622	3	NA	546741	NA	14	27	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	CHGA	14	92923080	92935293	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	CHGB	20	5911430	5925361	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	11	3	FALSE	HETLOSS	PASS
659_bTo_pair	CHI3L1	1	203178931	203186749	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	CHI3L2	1	111200771	111243440	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	CHIA	1	111290862	111320566	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	12	2	FALSE	HETLOSS	PASS
659_bTo_pair	CHIC1	23	73563200	73687102	FALSE	1317	0.217996879888221	62	71533297	76176924	0.364342740527346	5	NA	0.364342740527346	5	NA	4643627	NA	35	7	0	FALSE	AMP (many states)	PASS
659_bTo_pair	CHIC2	4	54009789	54064690	FALSE	283	-0.7726728361031	19	49038034	54241294	0.365165917639896	1	0	0.365165917639896	1	0	5203260	1	15	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	CHID1	11	867860	915058	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	12	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CHIT1	1	203212827	203273641	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	CHKA	11	68052859	68121444	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	13	1	FALSE	GAIN	PASS
659_bTo_pair	CHKB	22	50578949	50601455	FALSE	1272	-0.260847831900416	46	50286270	50731222	0.298322295679939	3	NA	0.298322295679939	3	NA	444952	NA	19	11	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CHKB-CPT1B	22	50568869	50582965	FALSE	1272	-0.260847831900416	46	50286270	50731222	0.298322295679939	3	NA	0.298322295679939	3	NA	444952	NA	19	29	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CHL1	3	196596	409417	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	26	0	FALSE	HETLOSS	PASS
659_bTo_pair	CHM	23	85861180	86047562	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	17	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	CHML	1	241628853	241640254	FALSE	84	-0.392646983169906	39	241532515	243426393	NA	2	NA	NA	2	NA	1893878	NA	10	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CHMP1A	16	89644431	89657845	FALSE	991	-0.654420383530572	22	89508463	89733977	0.291335969972972	1	0	0.291335969972972	1	0	225514	1	10	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	CHMP1B	18	11851396	11854449	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	3	0	FALSE	GAIN	PASS
659_bTo_pair	CHMP2A	19	58551566	58555124	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	5	0	FALSE	GAIN	PASS
659_bTo_pair	CHMP2B	3	87227271	87255548	FALSE	232	-0.785224171872638	14	72888305	88156485	0.365165917639896	1	0	0.365165917639896	1	0	15268180	1	18	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	CHMP3	2	86503431	86563479	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CHMP4A	14	24209583	24213869	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	6	2	FALSE	DIPLOID	PASS
659_bTo_pair	CHMP4B	20	33811304	33854366	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	CHMP4C	8	81732434	81759515	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	5	0	FALSE	GAIN	PASS
659_bTo_pair	CHMP5	9	33264879	33282069	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	8	0	FALSE	CNLOH	PASS
659_bTo_pair	CHMP6	17	80991598	81009517	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	CHMP7	8	23243637	23262000	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	11	2	FALSE	HETLOSS	PASS
659_bTo_pair	CHN1	2	174799363	175005369	FALSE	153	-0.469039793655258	34	172736055	177217715	NA	2	NA	NA	2	NA	4481660	NA	28	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CHN2	7	29146569	29514328	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	20	1	FALSE	GAIN	PASS
659_bTo_pair	CHODL	21	17901263	18267373	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	CHORDC1	11	90201160	90223364	FALSE	714	-0.230278951577934	46	86306357	90211282	0.298322295679939	3	NA	0.298322295679939	3	NA	3904925	NA	21	11	0	TRUE	GAIN (many states)	PASS
659_bTo_pair	CHP1	15	41230839	41281890	FALSE	894	-0.874433234740196	13	41183964	41662415	0.365165917639896	1	0	0.365165917639896	1	0	478451	1	12	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	CHP2	16	23754627	23758951	FALSE	960	-0.449512584299377	34	23658521	27234165	NA	2	NA	NA	2	NA	3575644	NA	16	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CHPF	2	219538947	219543787	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	CHPF2	7	151232489	151238827	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	CHPT1	12	101696947	101744140	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	CHRAC1	8	140511298	140517137	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	CHRD	3	184380073	184390736	FALSE	259	-0.260370931250901	44	183654025	185254015	0.345317016959666	3	1	0.345317016959666	3	1	1599990	2	31	24	3	FALSE	GAIN	PASS
659_bTo_pair	CHRDL1	23	110673856	110795819	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	11	0	FALSE	AMP (many states)	PASS
659_bTo_pair	CHRDL2	11	74696429	74731385	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	12	1	FALSE	GAIN	PASS
659_bTo_pair	CHRFAM7A	15	30357766	30393849	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	CHRM1	11	62908679	62921807	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CHRM2	7	136868669	137020255	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CHRM3	1	239386565	239915452	FALSE	82	-0.550278310688863	27	235196044	241494870	1	2	1	1	2	1	6298826	1	22	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	CHRM4	11	46385098	46386608	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CHRM5	15	33968720	34067457	FALSE	888	-0.723950250184678	19	32774281	34342000	0.365165917639896	1	0	0.365165917639896	1	0	1567719	1	10	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	CHRNA1	2	174747592	174787935	FALSE	153	-0.469039793655258	34	172736055	177217715	NA	2	NA	NA	2	NA	4481660	NA	28	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CHRNA10	11	3665587	3671384	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	CHRNA2	8	27459761	27479883	FALSE	522	-0.616914645700195	26	26383178	27467373	NA	2	NA	NA	2	NA	1084195	NA	8	9	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	CHRNA3	15	78593052	78621295	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	10	4	FALSE	HETLOSS	PASS
659_bTo_pair	CHRNA4	20	63343223	63378401	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	CHRNA5	15	78565520	78595269	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	CHRNA6	8	42752620	42796392	FALSE	541	-0.815492706726597	16	42338595	47735321	0.365165917639896	1	0	0.365165917639896	1	0	5396726	1	15	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	CHRNA7	15	31923438	32173018	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	10	2	FALSE	HETLOSS	PASS
659_bTo_pair	CHRNA9	4	40335329	40355217	FALSE	280	-0.191477557443324	47	38829296	41740154	0.365165917639896	3	1	0.365165917639896	3	1	2910858	2	22	8	0	FALSE	GAIN	PASS
659_bTo_pair	CHRNB1	17	7445061	7457707	FALSE	1000	-0.750226164220686	19	7324407	7655594	0.365165917639896	1	0	0.365165917639896	1	0	331187	1	31	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	CHRNB2	1	154567781	154580026	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	CHRNB3	8	42697376	42737407	FALSE	541	-0.815492706726597	16	42338595	47735321	0.365165917639896	1	0	0.365165917639896	1	0	5396726	1	15	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	CHRNB4	15	78624119	78727754	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	CHRND	2	232525993	232536667	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	CHRNE	17	4897774	4934438	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	22	2	FALSE	HETLOSS	PASS
659_bTo_pair	CHRNG	2	232539727	232546403	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	CHST1	11	45648877	45665622	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	CHST10	2	100391860	100417656	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	CHST11	12	104455295	104762014	FALSE	798	-0.492720037723834	34	102839233	105367537	NA	2	NA	NA	2	NA	2528304	NA	20	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CHST12	7	2403560	2448483	FALSE	451	-0.380727397700309	39	2432806	2844144	NA	2	NA	NA	2	NA	411338	NA	8	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CHST13	3	126524283	126543291	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	6	3	FALSE	GAIN	PASS
659_bTo_pair	CHST14	15	40470998	40474571	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	CHST15	10	124007666	124093607	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	11	0	FALSE	CNLOH	PASS
659_bTo_pair	CHST2	3	143119331	143124014	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	7	0	FALSE	GAIN	PASS
659_bTo_pair	CHST3	10	71964365	72013564	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	6	0	FALSE	CNLOH	PASS
659_bTo_pair	CHST4	16	71525233	71538746	FALSE	983	-0.428709389755029	30	71178941	72171154	1	2	1	1	2	1	992213	1	22	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	CHST5	16	75528535	75535247	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	CHST6	16	75472052	75495445	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	CHST7	23	46573784	46598408	FALSE	1292	0.0982305969328026	59	45151653	47144467	0.308533751035793	5	NA	0.308533751035793	5	NA	1992814	NA	9	6	0	FALSE	AMP (many states)	PASS
659_bTo_pair	CHST8	19	33621955	33773509	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	CHST9	18	26906481	27185317	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	9	0	FALSE	GAIN	PASS
659_bTo_pair	CHSY1	15	101175723	101251932	FALSE	933	-0.918772702357227	12	98968746	101922991	0.365165917639896	1	0	0.365165917639896	1	0	2954245	1	21	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	CHSY3	5	129904472	130186634	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	CHTF18	16	788046	800737	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	26	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CHTF8	16	69118010	69132584	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	4	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CHTOP	1	153633982	153646306	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	CHUK	10	100188298	100229619	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	21	0	FALSE	CNLOH	PASS
659_bTo_pair	CHURC1	14	64914361	64944591	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	CHURC1-FNTB	14	64914485	65061803	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	30	0	FALSE	DIPLOID	PASS
659_bTo_pair	CIAO1	2	96266132	96273349	FALSE	127	2.33118807409228	110	96248652	96266360	0.364342740527346	34	NA	0.364342740527346	34	NA	17708	NA	2	9	0	TRUE	AMP	PASS
659_bTo_pair	CIAO2A	15	64072559	64094018	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	CIAO2B	16	66932055	66934423	FALSE	974	-0.455513775034755	34	66912726	67009122	NA	2	NA	NA	2	NA	96396	NA	6	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CIAO3	16	729753	741329	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	12	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CIAPIN1	16	57428169	57447528	FALSE	971	-0.537344591536493	29	57069860	57923335	NA	2	NA	NA	2	NA	853475	NA	21	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CIART	1	150282543	150287093	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	CIB1	15	90229975	90234047	FALSE	927	-0.86531749998723	13	90191956	90642068	0.365165917639896	1	0	0.365165917639896	1	0	450112	1	11	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	CIB2	15	78104606	78131544	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	CIB3	19	16161368	16173525	FALSE	1152	-0.702482358931041	22	15914366	16234459	0.291335969972972	1	0	0.291335969972972	1	0	320093	1	8	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	CIB4	2	26581202	26641368	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	7	2	FALSE	DIPLOID	PASS
659_bTo_pair	CIC	19	42268537	42295797	TRUE	1178	1.92315041408938	101	42254970	42295766	0.364342740527346	25	NA	0.364342740527346	25	NA	40796	NA	3	45	0	FALSE	AMP	PASS
659_bTo_pair	CIDEA	18	12254319	12277595	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	6	0	FALSE	GAIN	PASS
659_bTo_pair	CIDEB	14	24305096	24311430	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	CIDEC	3	9866711	9880254	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	CIITA	16	10866222	10943021	TRUE	951	1.64171217003096	96	10877349	10923254	0.364342740527346	20	NA	0.364342740527346	20	NA	45905	NA	1	27	3	TRUE	AMP	PASS
659_bTo_pair	CILP	15	65194758	65211488	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	19	1	FALSE	HETLOSS	PASS
659_bTo_pair	CILP2	19	19538248	19546659	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	18	0	FALSE	AMP (many states)	PASS
659_bTo_pair	CINP	14	102341102	102362916	FALSE	878	-0.78309571727566	16	102193484	102726534	0.365165917639896	1	0	0.365165917639896	1	0	533050	1	7	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	CIP2A	3	108549869	108589644	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	21	0	FALSE	GAIN	PASS
659_bTo_pair	CIPC	14	77098097	77117287	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CIR1	2	174348022	174395715	FALSE	153	-0.469039793655258	34	172736055	177217715	NA	2	NA	NA	2	NA	4481660	NA	28	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CIRBP	19	1259384	1274880	FALSE	1116	-0.668595541323287	22	1229189	1605424	0.291335969972972	1	0	0.291335969972972	1	0	376235	1	21	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	CISD1	10	58269058	58289586	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	3	0	FALSE	CNLOH	PASS
659_bTo_pair	CISD2	4	102868974	102892807	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	CISD3	17	38730235	38735044	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CISH	3	50606490	50611831	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	CIT	12	119685790	119877291	FALSE	808	-0.531025796359709	27	115966146	120090026	1	2	1	1	2	1	4123880	1	23	48	3	FALSE	DIPLOID	PASS
659_bTo_pair	CITED1	23	72301638	72307187	FALSE	1317	0.217996879888221	62	71533297	76176924	0.364342740527346	5	NA	0.364342740527346	5	NA	4643627	NA	35	4	1	FALSE	AMP (many states)	PASS
659_bTo_pair	CITED2	6	139371807	139374620	FALSE	429	-0.412609995390511	39	138092232	142443520	NA	2	NA	NA	2	NA	4351288	NA	18	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CITED4	1	40861051	40862366	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	2	1	FALSE	DIPLOID	PASS
659_bTo_pair	CIZ1	9	128166064	128204383	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	CKAP2	13	52455429	52476628	FALSE	836	-0.444239733377228	32	50956423	72747004	0.365165917639896	2	0	0.365165917639896	2	0	21790581	2	40	13	0	FALSE	CNLOH	PASS
659_bTo_pair	CKAP2L	2	112736607	112764677	FALSE	138	-0.423459519967032	34	112060069	113201423	NA	2	NA	NA	2	NA	1141354	NA	21	14	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CKAP4	12	106237877	106304279	FALSE	799	2.16615713574354	107	106063423	106314403	0.364342740527346	30	NA	0.364342740527346	30	NA	250980	NA	3	8	0	FALSE	AMP	PASS
659_bTo_pair	CKAP5	11	46743048	46846308	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	44	1	TRUE	DIPLOID	PASS
659_bTo_pair	CKB	14	103519659	103523111	FALSE	881	-0.341614784223633	43	103502897	103687181	0.192136715055622	3	NA	0.192136715055622	3	NA	184284	NA	7	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CKLF	16	66552563	66566251	FALSE	973	-0.642771892390385	26	64948130	66912568	NA	2	NA	NA	2	NA	1964438	NA	17	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CKLF-CMTM1	16	66552587	66579135	FALSE	973	-0.642771892390385	26	64948130	66912568	NA	2	NA	NA	2	NA	1964438	NA	17	10	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CKM	19	45306414	45322977	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	CKMT1A	15	43692886	43699222	FALSE	902	-0.672637691845835	22	43521582	44676538	0.291335969972972	1	0	0.291335969972972	1	0	1154956	1	21	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	CKMT1B	15	43593054	43604901	FALSE	902	-0.672637691845835	22	43521582	44676538	0.291335969972972	1	0	0.291335969972972	1	0	1154956	1	21	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	CKMT2	5	81233285	81266397	FALSE	327	-0.729214269739125	19	80961009	86619409	0.365165917639896	1	0	0.365165917639896	1	0	5658400	1	14	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	CKS1B	1	154974653	154979249	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	CKS2	9	89311198	89316703	FALSE	604	-0.547885090101936	27	85547201	90613824	1	2	1	1	2	1	5066623	1	21	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	CLASP1	2	121337776	121649587	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	43	0	FALSE	DIPLOID	PASS
659_bTo_pair	CLASP2	3	33496245	33718356	FALSE	209	-0.637968449787088	26	31990360	37328493	NA	2	NA	NA	2	NA	5338133	NA	26	43	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CLASRP	19	45039040	45070956	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	CLBA1	14	104985775	105010482	FALSE	885	-0.488568816150345	30	104868462	105529782	1	2	1	1	2	1	661320	1	18	6	2	FALSE	DIPLOID	PASS
659_bTo_pair	CLC	19	39731250	39738028	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CLCA1	1	86468368	86500289	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	21	1	FALSE	DIPLOID	PASS
659_bTo_pair	CLCA2	1	86424086	86456558	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	19	3	FALSE	DIPLOID	PASS
659_bTo_pair	CLCA4	1	86547078	86580754	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	CLCC1	1	108929508	108963457	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	CLCF1	11	67364168	67374177	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	5	1	FALSE	GAIN	PASS
659_bTo_pair	CLCN1	7	143316126	143352083	FALSE	503	-0.495530614890199	34	143026241	143572680	NA	2	NA	NA	2	NA	546439	NA	15	26	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CLCN2	3	184346185	184361651	FALSE	259	-0.260370931250901	44	183654025	185254015	0.345317016959666	3	1	0.345317016959666	3	1	1599990	2	31	22	1	FALSE	GAIN	PASS
659_bTo_pair	CLCN3	4	169612633	169723673	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	CLCN4	23	10156945	10237660	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	16	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	CLCN5	23	49922615	50099235	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	18	0	FALSE	AMP (many states)	PASS
659_bTo_pair	CLCN6	1	11806096	11848079	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	27	4	FALSE	DIPLOID	PASS
659_bTo_pair	CLCN7	16	1444934	1475580	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	26	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CLCNKA	1	16018875	16034050	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	21	1	FALSE	DIPLOID	PASS
659_bTo_pair	CLCNKB	1	16043736	16057308	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	CLDN1	3	190305701	190322475	FALSE	269	-0.263219948753545	44	189957970	195888442	0.345317016959666	3	1	0.345317016959666	3	1	5930472	2	31	5	0	FALSE	GAIN	PASS
659_bTo_pair	CLDN10	13	95433604	95579759	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	7	0	FALSE	CNLOH	PASS
659_bTo_pair	CLDN11	3	170418865	170454733	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	4	0	FALSE	GAIN	PASS
659_bTo_pair	CLDN12	7	90383721	90513402	FALSE	479	-0.448308050861149	30	87602941	92590330	1	2	1	1	2	1	4987389	1	30	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	CLDN14	21	36460621	36576569	FALSE	1228	-0.430637379115077	30	36009679	38367602	1	2	1	1	2	1	2357923	1	17	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	CLDN15	7	101232092	101238820	FALSE	484	-0.570670723449775	26	101042591	102111653	NA	2	NA	NA	2	NA	1069062	NA	15	6	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CLDN16	3	190322541	190412143	FALSE	269	-0.263219948753545	44	189957970	195888442	0.345317016959666	3	1	0.345317016959666	3	1	5930472	2	31	6	0	FALSE	GAIN	PASS
659_bTo_pair	CLDN17	21	30165564	30166756	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	CLDN18	3	137998735	138033655	FALSE	244	-0.465451876797886	34	136855703	138629155	NA	2	NA	NA	2	NA	1773452	NA	14	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CLDN19	1	42733093	42740254	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CLDN2	23	106900164	106930861	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	8	0	FALSE	AMP (many states)	PASS
659_bTo_pair	CLDN20	6	155264013	155276548	FALSE	440	-0.500001062559341	30	152129628	156771069	1	2	1	1	2	1	4641441	1	14	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	CLDN22	4	183318194	183320774	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	CLDN23	8	8701938	8704106	FALSE	513	-0.539533056245158	29	8377275	8703178	NA	2	NA	NA	2	NA	325903	NA	2	4	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CLDN24	4	183321764	183322426	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	3	1	FALSE	HETLOSS	PASS
659_bTo_pair	CLDN25	11	113779747	113780500	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	CLDN3	7	73768997	73770270	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	CLDN34	23	9967358	9968352	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	3	1	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	CLDN4	7	73799542	73832693	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	CLDN5	22	19523024	19527545	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	4	0	FALSE	CNLOH	PASS
659_bTo_pair	CLDN6	16	3014712	3020071	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	3	1	FALSE	HETLOSS	PASS
659_bTo_pair	CLDN7	17	7259903	7263983	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	CLDN8	21	30214006	30216073	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	CLDN9	16	3012456	3014505	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	CLDND1	3	98497912	98523066	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	10	0	FALSE	GAIN	PASS
659_bTo_pair	CLDND2	19	51367098	51369003	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	CLEC10A	17	7074537	7080307	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	CLEC11A	19	50723329	50725718	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	CLEC12A	12	9951316	9995694	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	CLEC12B	12	10010627	10018619	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	CLEC14A	14	38254103	38256369	FALSE	858	-0.388807455224718	39	37680254	45134449	NA	2	NA	NA	2	NA	7454195	NA	16	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CLEC16A	16	10944488	11182189	FALSE	952	-0.553149391889556	29	10941928	11166598	NA	2	NA	NA	2	NA	224670	NA	3	27	5	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	CLEC17A	19	14583084	14611157	FALSE	1149	-0.413849407553013	38	14562540	15157819	0.164051638880412	2	0	0.164051638880412	2	0	595279	2	17	13	0	FALSE	CNLOH	PASS
659_bTo_pair	CLEC18A	16	69950705	69964452	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	6	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CLEC18B	16	74408270	74421953	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	13	6	FALSE	DIPLOID	PASS
659_bTo_pair	CLEC18C	16	70173322	70187361	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CLEC19A	16	19285739	19322145	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	CLEC1A	12	10069554	10111627	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CLEC1B	12	9985642	10013424	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	CLEC2A	12	9898673	9932381	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CLEC2B	12	9852984	9870136	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	CLEC2D	12	9664969	9699555	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	CLEC2L	7	139523856	139544984	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	CLEC3A	16	78022515	78066761	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	5	2	FALSE	DIPLOID	PASS
659_bTo_pair	CLEC3B	3	45001548	45036071	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	CLEC4A	12	8123632	8138607	FALSE	745	-0.243574834353832	44	6965649	8175835	0.345317016959666	3	1	0.345317016959666	3	1	1210186	2	26	6	0	FALSE	GAIN	PASS
659_bTo_pair	CLEC4C	12	7729415	7751605	FALSE	745	-0.243574834353832	44	6965649	8175835	0.345317016959666	3	1	0.345317016959666	3	1	1210186	2	26	6	0	FALSE	GAIN	PASS
659_bTo_pair	CLEC4D	12	8509475	8522366	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CLEC4E	12	8533305	8540963	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CLEC4F	2	70808643	70820600	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	CLEC4G	19	7728957	7733906	FALSE	1130	-0.690953718254595	21	7440128	7870576	0.140309795179477	0	0	0.140309795179477	0	0	430448	0	25	10	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CLEC4M	19	7763149	7769605	FALSE	1130	-0.690953718254595	21	7440128	7870576	0.140309795179477	0	0	0.140309795179477	0	0	430448	0	25	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CLEC5A	7	141927357	141947007	FALSE	500	-0.745042700177313	19	140929950	142218464	0.365165917639896	1	0	0.365165917639896	1	0	1288514	1	15	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	CLEC6A	12	8455926	8478330	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CLEC7A	12	10116777	10130258	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	CLEC9A	12	10030677	10066027	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	CLECL1	12	9715860	9733299	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	CLGN	4	140388455	140427968	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	CLHC1	2	55174791	55232563	FALSE	111	-0.244883980498374	46	54612139	55346218	0.298322295679939	3	NA	0.298322295679939	3	NA	734079	NA	7	11	3	FALSE	GAIN (many states)	PASS
659_bTo_pair	CLIC1	6	31730581	31739763	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	CLIC2	23	155276211	155334657	FALSE	1341	-0.0231097163941018	55	154552015	155545250	0.328696605851359	4	NA	0.328696605851359	4	NA	993235	NA	23	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CLIC3	9	136994635	136996803	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	CLIC4	1	24745357	24844324	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CLIC5	6	45880827	46080348	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	CLIC6	21	34669389	34718227	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	CLINT1	5	157785743	157859175	FALSE	353	-0.698571741790457	22	157138801	161546576	0.291335969972972	1	0	0.291335969972972	1	0	4407775	1	29	14	1	FALSE	HETLOSS	PASS
659_bTo_pair	CLIP1	12	122271432	122422632	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	30	0	FALSE	DIPLOID	PASS
659_bTo_pair	CLIP2	7	74289475	74405943	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	22	2	FALSE	DIPLOID	PASS
659_bTo_pair	CLIP3	19	36014660	36033343	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	CLIP4	2	29097705	29189643	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	CLK1	2	200853009	200864744	FALSE	164	-0.381871160033202	39	198084145	201228955	NA	2	NA	NA	2	NA	3144810	NA	19	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CLK2	1	155262868	155278491	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	CLK3	15	74598500	74645414	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	CLK4	5	178602664	178630615	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	CLLU1OS	12	92420094	92428148	FALSE	795	2.70591581692037	117	92140294	92421082	0.364342740527346	46	NA	0.364342740527346	46	NA	280788	NA	2	5	0	TRUE	AMP	PASS
659_bTo_pair	CLMN	14	95181940	95319906	FALSE	874	-0.38394723851277	39	95191724	95543957	NA	2	NA	NA	2	NA	352233	NA	3	19	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CLMP	11	123069865	123195281	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	CLN3	16	28474111	28495575	FALSE	962	-0.522336070959039	29	27403203	28925074	NA	2	NA	NA	2	NA	1521871	NA	25	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CLN5	13	76990660	77019143	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	13	3	FALSE	CNLOH	PASS
659_bTo_pair	CLN6	15	68206992	68257211	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	CLN8	8	1755778	1801711	FALSE	510	-0.906181747703467	12	166288	7823395	0.365165917639896	1	0	0.365165917639896	1	0	7657107	1	48	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	CLNK	4	10486395	10684865	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	18	1	FALSE	GAIN	PASS
659_bTo_pair	CLNS1A	11	77514936	77637805	FALSE	712	-0.188800010767045	48	77590086	86068715	0.365165917639896	3	NA	0.365165917639896	3	NA	8478629	NA	30	11	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CLOCK	4	55427903	55547138	FALSE	285	-0.676685623676823	22	55346376	64409389	0.291335969972972	1	0	0.291335969972972	1	0	9063013	1	23	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	CLP1	11	57648992	57661868	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	6	0	FALSE	GAIN	PASS
659_bTo_pair	CLPB	11	72285495	72434680	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	20	0	FALSE	GAIN	PASS
659_bTo_pair	CLPP	19	6361452	6368910	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CLPS	6	35794982	35797344	FALSE	393	-0.47521086997284	30	35476361	36677919	1	2	1	1	2	1	1201558	1	21	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	CLPSL1	6	35781017	35793675	FALSE	393	-0.47521086997284	30	35476361	36677919	1	2	1	1	2	1	1201558	1	21	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	CLPSL2	6	35776594	35779552	FALSE	393	-0.47521086997284	30	35476361	36677919	1	2	1	1	2	1	1201558	1	21	4	2	FALSE	DIPLOID	PASS
659_bTo_pair	CLPTM1	19	44954585	44993341	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	17	2	FALSE	HETLOSS	PASS
659_bTo_pair	CLPTM1L	5	1317744	1345099	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	16	1	FALSE	GAIN	PASS
659_bTo_pair	CLPX	15	65148219	65185342	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	CLRN1	3	150926163	150972999	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	8	2	FALSE	GAIN	PASS
659_bTo_pair	CLRN2	4	17515165	17527104	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	5	0	FALSE	GAIN	PASS
659_bTo_pair	CLRN3	10	127877841	127892947	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	4	0	FALSE	CNLOH	PASS
659_bTo_pair	CLSPN	1	35720218	35769967	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	29	0	FALSE	DIPLOID	PASS
659_bTo_pair	CLSTN1	1	9729026	9824526	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	CLSTN2	3	139935185	140577397	FALSE	246	-0.322519280750539	43	139344000	142447976	0.192136715055622	3	NA	0.192136715055622	3	NA	3103976	NA	19	18	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CLSTN3	12	7129698	7158945	FALSE	745	-0.243574834353832	44	6965649	8175835	0.345317016959666	3	1	0.345317016959666	3	1	1210186	2	26	21	2	FALSE	GAIN	PASS
659_bTo_pair	CLTA	9	36190856	36304781	FALSE	592	-0.0369931589847324	55	36052313	36828293	0.328696605851359	4	NA	0.328696605851359	4	NA	775980	NA	7	22	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CLTB	5	176392455	176416569	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	CLTC	17	59619689	59696956	FALSE	1058	-0.423419268198233	34	58422367	59890994	NA	2	NA	NA	2	NA	1468627	NA	20	33	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CLTCL1	22	19179473	19291716	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	35	2	FALSE	CNLOH	PASS
659_bTo_pair	CLTRN	23	15627318	15675012	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	6	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	CLU	8	27596917	27615031	FALSE	523	-1.08188475411826	8	27469296	29263060	0.342391532111247	0	0	0.342391532111247	0	0	1793764	0	18	9	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CLUAP1	16	3500924	3539048	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	CLUH	17	2689386	2712663	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	26	1	FALSE	HETLOSS	PASS
659_bTo_pair	CLUL1	18	596988	650334	FALSE	1087	-0.181907359287398	48	580498	712613	0.365165917639896	3	NA	0.365165917639896	3	NA	132115	NA	4	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CLVS1	8	61057158	61501645	FALSE	550	-0.186881774239562	48	60208949	67746087	0.365165917639896	3	NA	0.365165917639896	3	NA	7537138	NA	33	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CLVS2	6	122995971	123072927	FALSE	421	-0.534093125771784	29	117482879	126348569	NA	2	NA	NA	2	NA	8865690	NA	29	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CLYBL	13	99606669	99897134	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	8	2	FALSE	CNLOH	PASS
659_bTo_pair	CMA1	14	24505353	24508265	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	CMAS	12	22046174	22065674	FALSE	757	-0.490002350483383	34	21512373	25195063	NA	2	NA	NA	2	NA	3682690	NA	15	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CMBL	5	10275875	10308026	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	6	0	FALSE	GAIN	PASS
659_bTo_pair	CMC1	3	28241584	28325142	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	CMC2	16	80966448	81020270	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	CMC4	23	155061622	155071362	FALSE	1341	-0.0231097163941018	55	154552015	155545250	0.328696605851359	4	NA	0.328696605851359	4	NA	993235	NA	23	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CMIP	16	81445170	81711762	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	25	1	FALSE	DIPLOID	PASS
659_bTo_pair	CMKLR1	12	108288044	108339341	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CMPK1	1	47333797	47378839	FALSE	16	-0.485631979032023	30	46175602	48453048	1	2	1	1	2	1	2277446	1	32	6	2	FALSE	DIPLOID	PASS
659_bTo_pair	CMPK2	2	6840570	6866635	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	CMSS1	3	99817834	100181732	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	27	1	FALSE	GAIN	PASS
659_bTo_pair	CMTM1	16	66566393	66579137	FALSE	973	-0.642771892390385	26	64948130	66912568	NA	2	NA	NA	2	NA	1964438	NA	17	5	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CMTM2	16	66579448	66588275	FALSE	973	-0.642771892390385	26	64948130	66912568	NA	2	NA	NA	2	NA	1964438	NA	17	5	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CMTM3	16	66603874	66613892	FALSE	973	-0.642771892390385	26	64948130	66912568	NA	2	NA	NA	2	NA	1964438	NA	17	5	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CMTM4	16	66614750	66696707	FALSE	973	-0.642771892390385	26	64948130	66912568	NA	2	NA	NA	2	NA	1964438	NA	17	5	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CMTM5	14	23376773	23379772	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CMTM6	3	32481312	32503408	FALSE	209	-0.637968449787088	26	31990360	37328493	NA	2	NA	NA	2	NA	5338133	NA	26	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CMTM7	3	32391671	32483067	FALSE	209	-0.637968449787088	26	31990360	37328493	NA	2	NA	NA	2	NA	5338133	NA	26	6	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CMTM8	3	32238679	32370325	FALSE	209	-0.637968449787088	26	31990360	37328493	NA	2	NA	NA	2	NA	5338133	NA	26	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CMTR1	6	37433219	37482827	FALSE	397	-0.509151429367598	27	37213022	41687167	1	2	1	1	2	1	4474145	1	33	23	1	FALSE	DIPLOID	PASS
659_bTo_pair	CMTR2	16	71281389	71289715	TRUE	983	-0.428709389755029	30	71178941	72171154	1	2	1	1	2	1	992213	1	22	10	3	FALSE	DIPLOID	PASS
659_bTo_pair	CMYA5	5	79689877	79800240	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	56	1	FALSE	HETLOSS	PASS
659_bTo_pair	CNBD1	8	86866442	87615219	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	11	1	FALSE	GAIN	PASS
659_bTo_pair	CNBD2	20	35954564	36030700	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	CNBP	3	129169484	129183922	FALSE	240	-0.311262736248051	40	128620554	130098189	0.308149309490068	3	1	0.308149309490068	3	1	1477635	2	22	4	0	FALSE	GAIN	PASS
659_bTo_pair	CNDP1	18	74534440	74587212	FALSE	1111	-0.872352968035647	12	63331800	74584528	0.365165917639896	1	0	0.365165917639896	1	0	11252728	1	31	13	1	FALSE	HETLOSS	PASS
659_bTo_pair	CNDP2	18	74495816	74523454	FALSE	1111	-0.872352968035647	12	63331800	74584528	0.365165917639896	1	0	0.365165917639896	1	0	11252728	1	31	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	CNEP1R1	16	50024410	50037088	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	CNFN	19	42387019	42390287	FALSE	1179	-0.582084941516902	26	42297317	43535595	NA	2	NA	NA	2	NA	1238278	NA	25	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CNGA1	4	47935977	48016672	FALSE	282	-0.204234033978701	47	41752697	49032685	0.365165917639896	3	1	0.365165917639896	3	1	7279988	2	31	13	4	FALSE	GAIN	PASS
659_bTo_pair	CNGA2	23	151738451	151745304	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	11	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	CNGA3	2	98346155	98398601	FALSE	130	-0.589699300815548	26	97757310	98396089	NA	2	NA	NA	2	NA	638779	NA	3	12	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	CNGA4	11	6234765	6244429	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	11	0	TRUE	HETLOSS	PASS
659_bTo_pair	CNGB1	16	57882340	57971116	FALSE	971	-0.537344591536493	29	57069860	57923335	NA	2	NA	NA	2	NA	853475	NA	21	36	7	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	CNGB3	8	86553977	86743675	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	23	0	FALSE	GAIN	PASS
659_bTo_pair	CNIH1	14	54423560	54441431	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	CNIH2	11	66278190	66285301	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	8	0	FALSE	GAIN	PASS
659_bTo_pair	CNIH3	1	224434660	224740549	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	CNIH4	1	224356850	224379459	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CNKSR1	1	26177403	26189886	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	CNKSR2	23	21372801	21654695	FALSE	1278	-0.021616497728569	55	20155391	23935235	0.328696605851359	4	NA	0.328696605851359	4	NA	3779844	NA	16	26	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CNKSR3	6	154387504	154510659	FALSE	440	-0.500001062559341	30	152129628	156771069	1	2	1	1	2	1	4641441	1	14	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	CNMD	13	52703264	52739812	FALSE	836	-0.444239733377228	32	50956423	72747004	0.365165917639896	2	0	0.365165917639896	2	0	21790581	2	40	7	0	FALSE	CNLOH	PASS
659_bTo_pair	CNN1	19	11538717	11550323	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	CNN2	19	1026581	1039068	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	9	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CNN3	1	94896949	94927278	FALSE	31	-0.34979279123772	43	94820443	100270584	0.192136715055622	3	NA	0.192136715055622	3	NA	5450141	NA	22	8	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	CNNM1	10	99329099	99394330	FALSE	666	-0.516928660882684	29	98163350	100063639	NA	2	NA	NA	2	NA	1900289	NA	16	18	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CNNM2	10	102918293	103090221	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	17	3	FALSE	CNLOH	PASS
659_bTo_pair	CNNM3	2	96816245	96833911	FALSE	128	-0.534748403488722	29	96267335	97158701	NA	2	NA	NA	2	NA	891366	NA	17	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CNNM4	2	96760902	96811891	FALSE	128	-0.534748403488722	29	96267335	97158701	NA	2	NA	NA	2	NA	891366	NA	17	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CNOT1	16	58519951	58629886	FALSE	972	-0.499158643645776	34	57931773	64947842	NA	2	NA	NA	2	NA	7016069	NA	18	50	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CNOT10	3	32685145	32773875	FALSE	209	-0.637968449787088	26	31990360	37328493	NA	2	NA	NA	2	NA	5338133	NA	26	20	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CNOT11	2	101252802	101270316	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	CNOT2	12	70242994	70354993	FALSE	790	-0.377310724638489	39	69586733	71157609	NA	2	NA	NA	2	NA	1570876	NA	11	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CNOT3	19	54137717	54155708	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	CNOT4	7	135361795	135510127	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	CNOT6	5	180494412	180578405	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	CNOT6L	4	77713387	77819615	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	CNOT7	8	17224964	17246878	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	CNOT8	5	154857553	154876793	FALSE	351	-0.617975601907695	26	154002251	157057925	NA	2	NA	NA	2	NA	3055674	NA	15	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CNOT9	2	218568580	218597080	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	CNP	17	41966741	41977731	FALSE	1036	-0.764029118419186	19	41624551	42193564	0.365165917639896	1	0	0.365165917639896	1	0	569013	1	25	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	CNPPD1	2	219171897	219178106	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	CNPY1	7	155474206	155555450	FALSE	509	-0.56054035608462	23	152759958	159144708	0.186356639256811	1	0	0.186356639256811	1	0	6384750	1	20	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	CNPY2	12	56309842	56316336	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CNPY3	6	42929192	42939287	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	CNPY4	7	100119613	100125511	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	CNR1	6	88139864	88166359	FALSE	407	-0.739487270214454	18	87337082	88963417	0.180216333675297	0	0	0.180216333675297	0	0	1626335	0	11	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CNR2	1	23870526	23913362	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	CNRIP1	2	68284171	68320051	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	4	2	FALSE	DIPLOID	PASS
659_bTo_pair	CNST	1	246566444	246668584	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	CNTD1	17	42798792	42811587	FALSE	1040	-0.646197503395479	26	42761348	43039396	NA	2	NA	NA	2	NA	278048	NA	18	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CNTD2	19	40222208	40226697	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CNTF	11	58622673	58625733	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	4	0	FALSE	GAIN	PASS
659_bTo_pair	CNTFR	9	34551432	34590140	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	9	0	FALSE	CNLOH	PASS
659_bTo_pair	CNTLN	9	17134982	17503923	FALSE	581	-0.746183084602222	19	10618009	19786745	0.365165917639896	1	0	0.365165917639896	1	0	9168736	1	24	30	0	FALSE	HETLOSS	PASS
659_bTo_pair	CNTN1	12	40692442	41072418	FALSE	763	-0.666248150632234	22	40489758	40943989	0.291335969972972	1	0	0.291335969972972	1	0	454231	1	2	26	0	TRUE	HETLOSS	PASS
659_bTo_pair	CNTN2	1	205042937	205078284	FALSE	66	-0.597189828646048	26	204618263	205619845	NA	2	NA	NA	2	NA	1001582	NA	13	23	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CNTN3	3	74262568	74521140	FALSE	232	-0.785224171872638	14	72888305	88156485	0.365165917639896	1	0	0.365165917639896	1	0	15268180	1	18	22	1	FALSE	HETLOSS	PASS
659_bTo_pair	CNTN4	3	2098813	3057956	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	22	2	FALSE	HETLOSS	PASS
659_bTo_pair	CNTN5	11	99020953	100358885	FALSE	717	-0.427991611956568	34	94512673	100992623	NA	2	NA	NA	2	NA	6479950	NA	19	24	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CNTN6	3	1092576	1404217	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	24	1	FALSE	HETLOSS	PASS
659_bTo_pair	CNTNAP1	17	42682613	42699814	FALSE	1038	-0.623371137159426	26	42404937	42698887	NA	2	NA	NA	2	NA	293950	NA	13	29	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CNTNAP2	7	146116002	148420998	FALSE	504	-0.812834819860627	15	143573123	148800568	0.21938209893867	0	0	0.21938209893867	0	0	5227445	0	25	29	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CNTNAP3	9	39072767	39288315	FALSE	595	-0.209027397852981	47	37442028	67884575	0.365165917639896	3	1	0.365165917639896	3	1	30442547	2	35	20	7	FALSE	GAIN	PASS
659_bTo_pair	CNTNAP3B	9	41890314	42129510	FALSE	595	-0.209027397852981	47	37442028	67884575	0.365165917639896	3	1	0.365165917639896	3	1	30442547	2	35	13	3	FALSE	GAIN	PASS
659_bTo_pair	CNTNAP4	16	76277278	76559238	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	27	2	FALSE	DIPLOID	PASS
659_bTo_pair	CNTNAP5	2	124025287	124915287	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	27	0	FALSE	DIPLOID	PASS
659_bTo_pair	CNTRL	9	121074863	121177610	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	48	0	FALSE	DIPLOID	PASS
659_bTo_pair	CNTROB	17	7932101	7949918	FALSE	1002	-0.806633716627379	14	7689340	8047671	0.365165917639896	1	0	0.365165917639896	1	0	358331	1	15	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	COA1	7	43608456	43729717	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	10	0	FALSE	GAIN	PASS
659_bTo_pair	COA3	17	42795147	42798704	FALSE	1040	-0.646197503395479	26	42761348	43039396	NA	2	NA	NA	2	NA	278048	NA	18	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	COA4	11	73872667	73876988	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	2	0	FALSE	GAIN	PASS
659_bTo_pair	COA5	2	98599310	98608515	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	COA6	1	234373456	234384049	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	COA7	1	52684451	52698366	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	COASY	17	42561467	42566277	FALSE	1038	-0.623371137159426	26	42404937	42698887	NA	2	NA	NA	2	NA	293950	NA	13	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	COBL	7	51016212	51316818	FALSE	467	-0.115184963745349	53	50463290	54757565	0.273255132087987	4	NA	0.273255132087987	4	NA	4294275	NA	7	27	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	COBLL1	2	164653624	164843679	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	24	1	FALSE	DIPLOID	PASS
659_bTo_pair	COCH	14	30874514	30895065	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	COG1	17	73192632	73208507	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	17	2	FALSE	DIPLOID	PASS
659_bTo_pair	COG2	1	230642489	230693982	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	18	1	FALSE	HETLOSS	PASS
659_bTo_pair	COG3	13	45464898	45536630	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	23	4	FALSE	HETLOSS	PASS
659_bTo_pair	COG4	16	70480568	70523565	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	19	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	COG5	7	107201555	107564514	FALSE	488	-0.464127371400283	34	107070260	116559206	NA	2	NA	NA	2	NA	9488946	NA	33	29	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	COG6	13	39655627	39791665	FALSE	830	-0.745621963362667	19	32401848	39788354	0.365165917639896	1	0	0.365165917639896	1	0	7386506	1	30	20	2	FALSE	HETLOSS	PASS
659_bTo_pair	COG7	16	23388493	23453180	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	COG8	16	69320140	69339667	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	19	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	COIL	17	56938187	56961054	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	COL10A1	6	116118923	116158747	FALSE	417	-0.520434008170675	29	114058103	117272433	NA	2	NA	NA	2	NA	3214330	NA	20	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	COL11A1	1	102876467	103108872	FALSE	32	-0.441874489475641	34	100273343	107324874	NA	2	NA	NA	2	NA	7051531	NA	18	68	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	COL11A2	6	33162681	33192499	FALSE	389	-0.565050845620731	23	33163789	33316917	0.186356639256811	1	0	0.186356639256811	1	0	153128	1	13	62	6	FALSE	HETLOSS	PASS
659_bTo_pair	COL12A1	6	75084326	75206051	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	75	2	FALSE	DIPLOID	PASS
659_bTo_pair	COL13A1	10	69801867	69964275	FALSE	651	-0.523280686314431	28	68722553	70760843	0.351300687168522	2	0	0.351300687168522	2	0	2038290	2	27	41	4	FALSE	CNLOH	PASS
659_bTo_pair	COL14A1	8	120059780	120372036	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	47	0	FALSE	GAIN	PASS
659_bTo_pair	COL15A1	9	98943179	99070792	FALSE	608	-0.541405085979946	27	95522076	99069752	1	2	1	1	2	1	3547676	1	31	44	4	FALSE	DIPLOID	PASS
659_bTo_pair	COL16A1	1	31652247	31704319	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	67	1	FALSE	DIPLOID	PASS
659_bTo_pair	COL17A1	10	104031286	104085957	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	55	6	FALSE	CNLOH	PASS
659_bTo_pair	COL18A1	21	45405137	45513720	FALSE	1239	-0.568555801579827	23	44960223	46664365	0.186356639256811	1	0	0.186356639256811	1	0	1704142	1	18	53	6	FALSE	HETLOSS	PASS
659_bTo_pair	COL19A1	6	69866571	70209976	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	49	4	FALSE	DIPLOID	PASS
659_bTo_pair	COL1A1	17	50183289	50201632	FALSE	1053	-0.561829441831031	26	49646906	50626743	NA	2	NA	NA	2	NA	979837	NA	25	46	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	COL1A2	7	94394561	94431232	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	51	0	FALSE	HETLOSS	PASS
659_bTo_pair	COL20A1	20	63293186	63334851	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	34	2	FALSE	DIPLOID	PASS
659_bTo_pair	COL21A1	6	56056590	56394094	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	33	3	FALSE	DIPLOID	PASS
659_bTo_pair	COL22A1	8	138588235	138914006	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	67	8	FALSE	DIPLOID	PASS
659_bTo_pair	COL23A1	5	178237618	178590555	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	29	3	FALSE	HETLOSS	PASS
659_bTo_pair	COL24A1	1	85729233	86156943	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	65	6	FALSE	DIPLOID	PASS
659_bTo_pair	COL25A1	4	108808725	109302752	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	41	2	FALSE	DIPLOID	PASS
659_bTo_pair	COL26A1	7	101362820	101559024	FALSE	484	-0.570670723449775	26	101042591	102111653	NA	2	NA	NA	2	NA	1069062	NA	15	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	COL27A1	9	114155560	114312511	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	68	6	FALSE	DIPLOID	PASS
659_bTo_pair	COL28A1	7	7356203	7535853	FALSE	456	-0.240618790532325	45	6028682	12688782	0.279823559258657	3	0	0.279823559258657	3	0	6660100	3	32	38	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	COL2A1	12	47972965	48004554	FALSE	767	0.862307370041402	76	47973141	48004508	0.364342740527346	10	NA	0.364342740527346	10	NA	31367	NA	1	59	3	FALSE	AMP	PASS
659_bTo_pair	COL3A1	2	188974320	189012746	FALSE	159	-0.50094907723407	34	185815441	189771912	NA	2	NA	NA	2	NA	3956471	NA	17	54	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	COL4A1	13	110148963	110307233	FALSE	844	-0.576217954819194	24	110150427	113263496	0.359751661895656	2	0	0.359751661895656	2	0	3113069	2	19	53	4	FALSE	CNLOH	PASS
659_bTo_pair	COL4A2	13	110305812	110513209	FALSE	844	-0.576217954819194	24	110150427	113263496	0.359751661895656	2	0	0.359751661895656	2	0	3113069	2	19	56	9	FALSE	CNLOH	PASS
659_bTo_pair	COL4A3	2	227164565	227314792	FALSE	186	-0.695736902539597	22	226867246	227993567	0.291335969972972	1	0	0.291335969972972	1	0	1126321	1	19	52	2	FALSE	HETLOSS	PASS
659_bTo_pair	COL4A3BP	5	75356345	75512138	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	25	0	FALSE	HETLOSS	PASS
659_bTo_pair	COL4A4	2	227002711	227164453	FALSE	186	-0.695736902539597	22	226867246	227993567	0.291335969972972	1	0	0.291335969972972	1	0	1126321	1	19	49	1	FALSE	HETLOSS	PASS
659_bTo_pair	COL4A5	23	108439844	108697545	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	50	0	FALSE	AMP (many states)	PASS
659_bTo_pair	COL4A6	23	108155607	108439497	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	50	0	FALSE	AMP (many states)	PASS
659_bTo_pair	COL5A1	9	134641774	134844843	FALSE	628	1.37408336359478	87	134326595	134750608	0.364342740527346	16	NA	0.364342740527346	16	NA	424013	NA	2	69	6	TRUE	AMP	PASS
659_bTo_pair	COL5A2	2	189031896	189225312	FALSE	159	-0.50094907723407	34	185815441	189771912	NA	2	NA	NA	2	NA	3956471	NA	17	57	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	COL5A3	19	9959561	10010471	FALSE	1136	-0.657304673205362	21	8981156	10119920	0.140309795179477	0	0	0.140309795179477	0	0	1138764	0	32	61	16	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	COL6A1	21	45981737	46005050	FALSE	1239	-0.568555801579827	23	44960223	46664365	0.186356639256811	1	0	0.186356639256811	1	0	1704142	1	18	34	1	FALSE	HETLOSS	PASS
659_bTo_pair	COL6A2	21	46098097	46132849	FALSE	1239	-0.568555801579827	23	44960223	46664365	0.186356639256811	1	0	0.186356639256811	1	0	1704142	1	18	33	4	FALSE	HETLOSS	PASS
659_bTo_pair	COL6A3	2	237324003	237414375	FALSE	190	-0.691419458816616	21	236392006	238848635	0.140309795179477	0	0	0.140309795179477	0	0	2456629	0	22	64	8	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	COL6A5	3	130345516	130484844	FALSE	241	0.885576091275013	76	130345743	130484860	0.364342740527346	10	NA	0.364342740527346	10	NA	139117	NA	1	62	13	FALSE	AMP	PASS
659_bTo_pair	COL6A6	3	130560334	130678155	FALSE	242	-0.32037413513609	40	130560427	134790274	0.308149309490068	3	1	0.308149309490068	3	1	4229847	2	29	51	5	FALSE	GAIN	PASS
659_bTo_pair	COL7A1	3	48564073	48595267	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	92	2	FALSE	HETLOSS	PASS
659_bTo_pair	COL8A1	3	99638475	99799226	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	10	0	FALSE	GAIN	PASS
659_bTo_pair	COL8A2	1	36095236	36125220	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	COL9A1	6	70215061	70303083	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	38	5	FALSE	DIPLOID	PASS
659_bTo_pair	COL9A2	1	40300487	40317813	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	27	1	FALSE	DIPLOID	PASS
659_bTo_pair	COL9A3	20	62816244	62841159	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	31	0	FALSE	DIPLOID	PASS
659_bTo_pair	COLCA2	11	111298555	111308735	FALSE	723	-0.542672588801529	29	108383083	111912852	NA	2	NA	NA	2	NA	3529769	NA	24	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	COLEC10	8	118995452	119106582	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	7	0	FALSE	GAIN	PASS
659_bTo_pair	COLEC11	2	3594832	3644644	FALSE	89	-0.524158836377085	27	41620	3847167	1	2	1	1	2	1	3805547	1	18	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	COLEC12	18	316740	500722	FALSE	1086	-0.476374446097734	34	47412	500536	NA	2	NA	NA	2	NA	453124	NA	4	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	COLGALT1	19	17555594	17583162	FALSE	1155	-0.249305971018279	46	17273895	17821522	0.298322295679939	3	NA	0.298322295679939	3	NA	547627	NA	25	13	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	COLGALT2	1	183929854	184037729	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	COLQ	3	15450133	15521751	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	18	4	FALSE	HETLOSS	PASS
659_bTo_pair	COMMD1	2	61888724	62147247	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	COMMD10	5	116084991	116412762	FALSE	331	-0.706980197323045	20	112861366	122075379	0.365165917639896	1	0	0.365165917639896	1	0	9214013	1	31	7	3	FALSE	HETLOSS	PASS
659_bTo_pair	COMMD2	3	149738470	149752499	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	5	1	FALSE	GAIN	PASS
659_bTo_pair	COMMD3	10	22315974	22320308	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	7	0	FALSE	CNLOH	PASS
659_bTo_pair	COMMD3-BMI1	10	22316388	22329542	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	16	0	FALSE	CNLOH	PASS
659_bTo_pair	COMMD4	15	75335891	75343224	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	COMMD5	8	144841042	144853736	FALSE	569	-0.29739638799535	43	144518163	145054121	0.192136715055622	3	NA	0.192136715055622	3	NA	535958	NA	13	11	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	COMMD6	13	75525219	75549439	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	4	0	FALSE	CNLOH	PASS
659_bTo_pair	COMMD7	20	32702691	32743997	FALSE	1202	0.844808231617173	76	32358370	32836730	0.364342740527346	10	NA	0.364342740527346	10	NA	478360	NA	7	8	0	FALSE	AMP	PASS
659_bTo_pair	COMMD8	4	47450796	47463719	FALSE	282	-0.204234033978701	47	41752697	49032685	0.365165917639896	3	1	0.365165917639896	3	1	7279988	2	31	5	0	FALSE	GAIN	PASS
659_bTo_pair	COMMD9	11	36269284	36289449	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	COMP	19	18782773	18791314	FALSE	1159	-0.165917001507678	49	18177228	19138502	0.365165917639896	3	1	0.365165917639896	3	1	961274	2	36	20	1	FALSE	GAIN	PASS
659_bTo_pair	COMT	22	19941607	19969975	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	6	0	FALSE	CNLOH	PASS
659_bTo_pair	COMTD1	10	75233969	75236030	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	6	1	FALSE	CNLOH	PASS
659_bTo_pair	COP1	1	175944831	176207493	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	23	0	FALSE	DIPLOID	PASS
659_bTo_pair	COPA	1	160288686	160343400	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	34	0	FALSE	DIPLOID	PASS
659_bTo_pair	COPB1	11	14443440	14500027	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	21	1	FALSE	DIPLOID	PASS
659_bTo_pair	COPB2	3	139355600	139389732	FALSE	246	-0.322519280750539	43	139344000	142447976	0.192136715055622	3	NA	0.192136715055622	3	NA	3103976	NA	19	24	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	COPE	19	18899514	18919397	FALSE	1159	-0.165917001507678	49	18177228	19138502	0.365165917639896	3	1	0.365165917639896	3	1	961274	2	36	11	2	FALSE	GAIN	PASS
659_bTo_pair	COPG1	3	129249606	129277773	FALSE	240	-0.311262736248051	40	128620554	130098189	0.308149309490068	3	1	0.308149309490068	3	1	1477635	2	22	24	0	FALSE	GAIN	PASS
659_bTo_pair	COPG2	7	130506238	130668748	FALSE	494	-0.536776174448359	29	129225418	130685270	NA	2	NA	NA	2	NA	1459852	NA	17	13	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	COPRS	17	31851864	31859337	FALSE	1020	-0.750634304030824	19	31391980	31901545	0.365165917639896	1	0	0.365165917639896	1	0	509565	1	3	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	COPS2	15	49106068	49155661	FALSE	904	-0.666047806656427	20	44736698	49422632	0.365165917639896	1	0	0.365165917639896	1	0	4685934	1	30	13	1	FALSE	HETLOSS	PASS
659_bTo_pair	COPS3	17	17246820	17281293	FALSE	1014	-0.559544539688918	26	17247059	18028347	NA	2	NA	NA	2	NA	781288	NA	10	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	COPS4	4	83034447	83075818	FALSE	289	-0.397475195823872	39	80335777	83458331	NA	2	NA	NA	2	NA	3122554	NA	19	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	COPS5	8	67043079	67083783	FALSE	550	-0.186881774239562	48	60208949	67746087	0.365165917639896	3	NA	0.365165917639896	3	NA	7537138	NA	33	11	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	COPS6	7	100088954	100092200	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	COPS7A	12	6723741	6731875	FALSE	743	-0.145896859645485	51	6620180	6938488	0.365165917639896	3	NA	0.365165917639896	3	NA	318308	NA	20	8	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	COPS7B	2	231781671	231809254	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	COPS8	2	237085312	237100466	FALSE	190	-0.691419458816616	21	236392006	238848635	0.140309795179477	0	0	0.140309795179477	0	0	2456629	0	22	8	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	COPS9	2	240126563	240136807	FALSE	194	-0.588828356865968	23	240025214	241817025	0.186356639256811	1	0	0.186356639256811	1	0	1791811	1	34	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	COPZ1	12	54301202	54351849	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	COPZ2	17	48026167	48038030	FALSE	1049	-0.703360644300681	22	47810585	48529853	0.291335969972972	1	0	0.291335969972972	1	0	719268	1	15	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	COQ10A	12	56266858	56270966	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	COQ10B	2	197453423	197475308	FALSE	163	-0.632896131155704	26	197453631	198083720	NA	2	NA	NA	2	NA	630089	NA	9	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	COQ2	4	83261536	83284914	FALSE	289	-0.397475195823872	39	80335777	83458331	NA	2	NA	NA	2	NA	3122554	NA	19	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	COQ3	6	99369400	99394204	FALSE	411	-0.455063723695114	34	95586870	106069771	NA	2	NA	NA	2	NA	10482901	NA	27	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	COQ4	9	128322536	128334072	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	COQ5	12	120503274	120534434	FALSE	810	-0.438737881374958	34	120127967	120903912	NA	2	NA	NA	2	NA	775945	NA	20	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	COQ6	14	73949926	73963670	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	COQ7	16	19067599	19080095	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	COQ8A	1	226897536	226987545	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	16	1	FALSE	HETLOSS	PASS
659_bTo_pair	COQ8B	19	40691529	40718207	FALSE	1173	-0.760690164248215	19	40322104	40807873	0.365165917639896	1	0	0.365165917639896	1	0	485769	1	21	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	COQ9	16	57447425	57461275	FALSE	971	-0.537344591536493	29	57069860	57923335	NA	2	NA	NA	2	NA	853475	NA	21	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CORIN	4	47593998	47838106	FALSE	282	-0.204234033978701	47	41752697	49032685	0.365165917639896	3	1	0.365165917639896	3	1	7279988	2	31	24	1	FALSE	GAIN	PASS
659_bTo_pair	CORO1A	16	30182827	30189076	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	CORO1B	11	67435510	67443821	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	16	0	FALSE	GAIN	PASS
659_bTo_pair	CORO1C	12	108645109	108731596	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	CORO2A	9	98120975	98192640	FALSE	608	-0.541405085979946	27	95522076	99069752	1	2	1	1	2	1	3547676	1	31	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	CORO2B	15	68578969	68727806	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	CORO6	17	29614756	29622907	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	CORO7	16	4354542	4425705	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	36	2	FALSE	DIPLOID	PASS
659_bTo_pair	CORO7-PAM16	16	4340251	4420494	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	41	2	FALSE	DIPLOID	PASS
659_bTo_pair	CORT	1	10449719	10451902	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	COTL1	16	84565594	84618077	FALSE	987	-0.578642888038652	23	81999201	85806436	0.186356639256811	1	0	0.186356639256811	1	0	3807235	1	31	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	COX10	17	14069496	14208677	FALSE	1009	-0.493836167698037	33	12666172	16027364	0.344071079426502	2	0	0.344071079426502	2	0	3361192	2	21	9	0	FALSE	CNLOH	PASS
659_bTo_pair	COX11	17	54951902	54968785	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	8	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	COX14	12	50111979	50120457	FALSE	772	-0.61197679162419	26	50109466	51920864	NA	2	NA	NA	2	NA	1811398	NA	27	1	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	COX15	10	99711844	99732100	FALSE	666	-0.516928660882684	29	98163350	100063639	NA	2	NA	NA	2	NA	1900289	NA	16	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	COX16	14	70325081	70359731	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	COX17	3	119654513	119677454	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	5	2	FALSE	GAIN	PASS
659_bTo_pair	COX18	4	73052362	73069755	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	COX19	7	898778	975599	FALSE	450	-0.329551508654045	40	193185	2379492	0.308149309490068	3	1	0.308149309490068	3	1	2186307	2	26	16	1	FALSE	GAIN	PASS
659_bTo_pair	COX20	1	244835322	244845057	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	COX4I1	16	85798633	85807044	FALSE	987	-0.578642888038652	23	81999201	85806436	0.186356639256811	1	0	0.186356639256811	1	0	3807235	1	31	6	1	TRUE	HETLOSS	PASS
659_bTo_pair	COX4I2	20	31637888	31645006	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	4	0	TRUE	DIPLOID	PASS
659_bTo_pair	COX5A	15	74919791	74938168	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	COX5B	2	97646040	97648383	FALSE	129	-0.0788460339292772	54	97162194	97739861	0.311828977193897	4	2	0.311828977193897	4	2	577667	2	6	4	0	FALSE	TETRAPLOID	PASS
659_bTo_pair	COX6A1	12	120438090	120440742	FALSE	810	-0.438737881374958	34	120127967	120903912	NA	2	NA	NA	2	NA	775945	NA	20	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	COX6A2	16	31427731	31428428	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	COX6B1	19	35648223	35658861	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	3	1	FALSE	HETLOSS	PASS
659_bTo_pair	COX6B2	19	55349306	55354814	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	3	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	COX6C	8	99873200	99894062	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	3	0	FALSE	GAIN	PASS
659_bTo_pair	COX7A1	19	36150922	36152869	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	COX7A2	6	75237675	75250323	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	COX7A2L	2	42333546	42425088	FALSE	106	-0.392858868113437	39	42335725	46184779	NA	2	NA	NA	2	NA	3849054	NA	22	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	COX7B	23	77899438	77907373	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	3	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	COX7B2	4	46734827	46909235	FALSE	282	-0.204234033978701	47	41752697	49032685	0.365165917639896	3	1	0.365165917639896	3	1	7279988	2	31	2	0	FALSE	GAIN	PASS
659_bTo_pair	COX7C	5	86617904	86620962	FALSE	327	-0.729214269739125	19	80961009	86619409	0.365165917639896	1	0	0.365165917639896	1	0	5658400	1	14	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	COX8A	11	63974607	63976543	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	2	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	COX8C	14	93347191	93348356	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	CP	3	149162410	149222055	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	29	0	FALSE	GAIN	PASS
659_bTo_pair	CPA1	7	130380339	130388114	FALSE	494	-0.536776174448359	29	129225418	130685270	NA	2	NA	NA	2	NA	1459852	NA	17	11	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CPA2	7	130266827	130289798	FALSE	494	-0.536776174448359	29	129225418	130685270	NA	2	NA	NA	2	NA	1459852	NA	17	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CPA3	3	148865256	148897196	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	12	0	FALSE	GAIN	PASS
659_bTo_pair	CPA4	7	130293134	130324180	FALSE	494	-0.536776174448359	29	129225418	130685270	NA	2	NA	NA	2	NA	1459852	NA	17	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CPA5	7	130344816	130368730	FALSE	494	-0.536776174448359	29	129225418	130685270	NA	2	NA	NA	2	NA	1459852	NA	17	11	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CPA6	8	67422038	67746385	FALSE	550	-0.186881774239562	48	60208949	67746087	0.365165917639896	3	NA	0.365165917639896	3	NA	7537138	NA	33	11	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	CPAMD8	19	16892947	17026815	FALSE	1154	-0.533888138892061	27	16361883	17271664	1	2	1	1	2	1	909781	1	23	47	5	FALSE	DIPLOID	PASS
659_bTo_pair	CPB1	3	148791102	148860187	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	11	0	FALSE	GAIN	PASS
659_bTo_pair	CPB2	13	46053195	46105033	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	12	4	FALSE	HETLOSS	PASS
659_bTo_pair	CPD	17	30378905	30469989	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	27	0	FALSE	DIPLOID	PASS
659_bTo_pair	CPE	4	165361194	165498320	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	CPEB1	15	82543201	82648861	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	13	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CPEB2	4	15002674	15070153	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	19	1	FALSE	GAIN	PASS
659_bTo_pair	CPEB3	10	92046692	92291087	FALSE	662	-0.410954559094016	36	89715119	94762760	0.365165917639896	2	0	0.365165917639896	2	0	5047641	2	33	12	0	FALSE	CNLOH	PASS
659_bTo_pair	CPEB4	5	173888280	173961976	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	CPED1	7	120988677	121297444	FALSE	490	-0.576498321273708	26	116888215	124790543	NA	2	NA	NA	2	NA	7902328	NA	33	23	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CPHXL	16	75714224	75726442	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	CPLANE1	5	37106228	37249428	FALSE	314	-0.173277106490387	51	35904615	38924434	0.365165917639896	3	NA	0.365165917639896	3	NA	3019819	NA	16	65	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CPLANE2	1	16231700	16237162	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CPLX1	4	784957	826198	FALSE	272	-0.300029378244858	40	85877	1745020	0.308149309490068	3	1	0.308149309490068	3	1	1659143	2	29	4	1	FALSE	GAIN	PASS
659_bTo_pair	CPLX2	5	175796310	175884020	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	CPLX3	15	74826547	74831802	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	CPLX4	18	59275156	59318649	FALSE	1107	-0.779150604055344	19	58918284	59696746	0.365165917639896	1	0	0.365165917639896	1	0	778462	1	7	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	CPM	12	68842197	68971570	FALSE	787	2.20514282893682	108	68808384	68845458	0.364342740527346	31	NA	0.364342740527346	31	NA	37074	NA	2	21	0	TRUE	AMP	PASS
659_bTo_pair	CPN1	10	100042193	100081877	FALSE	666	-0.516928660882684	29	98163350	100063639	NA	2	NA	NA	2	NA	1900289	NA	16	10	2	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	CPN2	3	194339765	194351328	FALSE	269	-0.263219948753545	44	189957970	195888442	0.345317016959666	3	1	0.345317016959666	3	1	5930472	2	31	7	0	FALSE	GAIN	PASS
659_bTo_pair	CPNE1	20	35626031	35664956	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	25	3	FALSE	DIPLOID	PASS
659_bTo_pair	CPNE2	16	57092537	57148367	FALSE	971	-0.537344591536493	29	57069860	57923335	NA	2	NA	NA	2	NA	853475	NA	21	17	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CPNE3	8	86514427	86561498	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	16	0	FALSE	GAIN	PASS
659_bTo_pair	CPNE4	3	131533555	132285410	FALSE	242	-0.32037413513609	40	130560427	134790274	0.308149309490068	3	1	0.308149309490068	3	1	4229847	2	29	17	2	FALSE	GAIN	PASS
659_bTo_pair	CPNE5	6	36740775	36840002	FALSE	395	-0.486049210799182	34	36704239	37028105	NA	2	NA	NA	2	NA	323866	NA	7	24	4	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CPNE6	14	24070837	24078100	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	17	1	FALSE	DIPLOID	PASS
659_bTo_pair	CPNE7	16	89575768	89597246	FALSE	991	-0.654420383530572	22	89508463	89733977	0.291335969972972	1	0	0.291335969972972	1	0	225514	1	10	19	1	FALSE	HETLOSS	PASS
659_bTo_pair	CPNE8	12	38646822	38907430	FALSE	761	-0.518834393047475	27	38323923	40473121	1	2	1	1	2	1	2149198	1	8	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	CPNE9	3	9703807	9729908	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	CPO	2	206939554	206969474	FALSE	168	-0.499602545595775	30	203936898	208231285	1	2	1	1	2	1	4294387	1	25	9	4	FALSE	DIPLOID	PASS
659_bTo_pair	CPOX	3	98579446	98593723	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	9	1	FALSE	GAIN	PASS
659_bTo_pair	CPPED1	16	12659799	12804017	FALSE	956	-0.605095519339522	26	11976781	13235390	NA	2	NA	NA	2	NA	1258609	NA	3	5	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CPQ	8	96645227	97149654	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	8	0	FALSE	GAIN	PASS
659_bTo_pair	CPS1	2	210477682	210679107	FALSE	171	-0.69211072472077	22	209829280	210677970	0.291335969972972	1	0	0.291335969972972	1	0	848690	1	7	39	2	FALSE	HETLOSS	PASS
659_bTo_pair	CPSF1	8	144393229	144409349	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	31	0	FALSE	DIPLOID	PASS
659_bTo_pair	CPSF2	14	92121937	92172145	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	CPSF3	2	9423568	9473101	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	CPSF4	7	99438922	99457371	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	CPSF4L	17	73248449	73262352	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CPSF6	12	69239537	69274358	FALSE	788	-0.518856535477169	29	68856633	69390188	NA	2	NA	NA	2	NA	533555	NA	4	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CPSF7	11	61402641	61430031	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	12	0	FALSE	GAIN	PASS
659_bTo_pair	CPT1A	11	68754620	68844410	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	19	0	FALSE	GAIN	PASS
659_bTo_pair	CPT1B	22	50568861	50578465	FALSE	1272	-0.260847831900416	46	50286270	50731222	0.298322295679939	3	NA	0.298322295679939	3	NA	444952	NA	19	19	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CPT1C	19	49690898	49713731	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	CPT2	1	53196429	53214197	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	CPTP	1	1324756	1328897	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CPVL	7	28995231	29195451	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	15	3	FALSE	GAIN	PASS
659_bTo_pair	CPXCR1	23	88747225	88754785	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	4	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	CPXM1	20	2794069	2800637	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	CPXM2	10	123706207	123940267	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	18	4	FALSE	CNLOH	PASS
659_bTo_pair	CPZ	4	8592660	8619759	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	15	7	FALSE	GAIN	PASS
659_bTo_pair	CR1	1	207496147	207641765	FALSE	72	-0.634345269299765	26	207049716	207511604	NA	2	NA	NA	2	NA	461888	NA	7	37	5	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	CR1L	1	207645113	207738416	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	13	3	FALSE	DIPLOID	PASS
659_bTo_pair	CR2	1	207454230	207489895	FALSE	72	-0.634345269299765	26	207049716	207511604	NA	2	NA	NA	2	NA	461888	NA	7	23	5	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CRABP1	15	78340324	78348230	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	5	2	FALSE	HETLOSS	PASS
659_bTo_pair	CRABP2	1	156699606	156705816	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	CRACR2A	12	3606633	3764819	FALSE	739	-0.369471841682825	39	1104785	3873202	NA	2	NA	NA	2	NA	2768417	NA	20	18	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CRACR2B	11	826144	831991	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	11	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CRADD	12	93677375	93894840	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	CRAMP1	16	1612325	1677908	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	27	5	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CRAT	9	129094810	129111189	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	18	1	FALSE	HETLOSS	PASS
659_bTo_pair	CRB1	1	197268204	197478455	FALSE	60	-0.443336911293225	30	196228264	201209660	1	2	1	1	2	1	4981396	1	29	23	1	FALSE	DIPLOID	PASS
659_bTo_pair	CRB2	9	123356170	123380324	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	24	3	FALSE	HETLOSS	PASS
659_bTo_pair	CRB3	19	6463777	6467221	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	CRBN	3	3144628	3179727	TRUE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	CRCP	7	66114604	66154568	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CRCT1	1	152514502	152516010	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	CREB1	2	207529737	207603431	FALSE	168	-0.499602545595775	30	203936898	208231285	1	2	1	1	2	1	4294387	1	25	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	CREB3	9	35732335	35737004	FALSE	591	0.73474920581053	74	35684233	36036976	0.364342740527346	9	NA	0.364342740527346	9	NA	352743	NA	17	8	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	CREB3L1	11	46277661	46321422	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	CREB3L2	7	137874979	138002067	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	CREB3L3	19	4153601	4173054	FALSE	1123	1.2973896190232	86	4043292	4164654	0.364342740527346	15	NA	0.364342740527346	15	NA	121362	NA	3	12	0	TRUE	AMP	PASS
659_bTo_pair	CREB3L4	1	153967534	153974363	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	CREB5	7	28299321	28825894	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	14	0	FALSE	GAIN	PASS
659_bTo_pair	CREBBP	16	3725054	3880726	TRUE	947	1.55538543666861	91	3725263	3966942	0.364342740527346	19	NA	0.364342740527346	19	NA	241679	NA	2	69	2	FALSE	AMP	PASS
659_bTo_pair	CREBL2	12	12611827	12645108	FALSE	751	-0.581914964256938	26	12079319	12707317	NA	2	NA	NA	2	NA	627998	NA	7	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CREBRF	5	173056352	173139284	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	CREBZF	11	85659708	85682908	FALSE	712	-0.188800010767045	48	77590086	86068715	0.365165917639896	3	NA	0.365165917639896	3	NA	8478629	NA	30	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CREG1	1	167529117	167553805	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	CREG2	2	101345551	101387595	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CRELD1	3	9933822	9945413	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	CRELD2	22	49918167	49927540	FALSE	1271	-0.350898193716427	41	45922979	50285791	0.284729887459054	3	0	0.284729887459054	3	0	4362812	3	30	11	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	CREM	10	35126791	35212958	FALSE	640	-0.421497241268382	32	32269100	43094667	0.365165917639896	2	0	0.365165917639896	2	0	10825567	2	20	14	1	FALSE	CNLOH	PASS
659_bTo_pair	CRH	8	66176382	66178725	FALSE	550	-0.186881774239562	48	60208949	67746087	0.365165917639896	3	NA	0.365165917639896	3	NA	7537138	NA	33	3	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	CRHBP	5	76952713	76981158	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	CRHR1	17	45784280	45835828	FALSE	1046	-0.746772159255206	19	45395806	47696360	0.365165917639896	1	0	0.365165917639896	1	0	2300554	1	26	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	CRHR2	7	30651943	30700129	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	16	0	FALSE	GAIN	PASS
659_bTo_pair	CRIM1	2	36355926	36551135	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	20	2	FALSE	DIPLOID	PASS
659_bTo_pair	CRIP1	14	105486317	105488947	FALSE	885	-0.488568816150345	30	104868462	105529782	1	2	1	1	2	1	661320	1	18	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	CRIP2	14	105472962	105480170	FALSE	885	-0.488568816150345	30	104868462	105529782	1	2	1	1	2	1	661320	1	18	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	CRIP3	6	43299710	43308797	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	CRIPT	2	46616416	46625742	FALSE	108	-0.751130758275331	19	46479657	47176488	0.365165917639896	1	0	0.365165917639896	1	0	696831	1	11	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	CRISP1	6	49834257	49877096	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	CRISP2	6	49692358	49713590	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	CRISP3	6	49727384	49744437	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	CRISPLD1	8	74984515	75034558	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	15	0	FALSE	GAIN	PASS
659_bTo_pair	CRISPLD2	16	84819984	84920768	FALSE	987	-0.578642888038652	23	81999201	85806436	0.186356639256811	1	0	0.186356639256811	1	0	3807235	1	31	15	3	FALSE	HETLOSS	PASS
659_bTo_pair	CRK	17	1420689	1463162	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	CRKL	22	20917426	20953749	FALSE	1243	2.65477129534692	116	20917418	20953707	0.364342740527346	44	NA	0.364342740527346	44	NA	36289	NA	1	19	0	FALSE	AMP	PASS
659_bTo_pair	CRLF1	19	18572220	18607741	FALSE	1159	-0.165917001507678	49	18177228	19138502	0.365165917639896	3	1	0.365165917639896	3	1	961274	2	36	19	2	FALSE	GAIN	PASS
659_bTo_pair	CRLF3	17	30769388	30824776	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	CRLS1	20	6006090	6040053	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	CRMP1	4	5748084	5893058	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	35	7	FALSE	GAIN	PASS
659_bTo_pair	CRNKL1	20	20034368	20056046	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	CRNN	1	152409243	152414263	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	CROCC	1	16740273	16972979	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	59	14	FALSE	DIPLOID	PASS
659_bTo_pair	CROCC2	2	240906330	240993311	FALSE	194	-0.588828356865968	23	240025214	241817025	0.186356639256811	1	0	0.186356639256811	1	0	1791811	1	34	38	8	FALSE	HETLOSS	PASS
659_bTo_pair	CROT	7	87345681	87399795	FALSE	477	-0.558719554035895	26	86880427	87472624	NA	2	NA	NA	2	NA	592197	NA	5	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CRP	1	159712289	159714589	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	CRTAC1	10	97865000	98030828	FALSE	665	0.97210720427876	78	97865245	98030492	0.364342740527346	11	NA	0.364342740527346	11	NA	165247	NA	2	20	0	FALSE	AMP	PASS
659_bTo_pair	CRTAM	11	122838500	122872639	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	10	3	FALSE	DIPLOID	PASS
659_bTo_pair	CRTAP	3	33113979	33147773	FALSE	209	-0.637968449787088	26	31990360	37328493	NA	2	NA	NA	2	NA	5338133	NA	26	9	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CRTC1	19	18683677	18782333	FALSE	1159	-0.165917001507678	49	18177228	19138502	0.365165917639896	3	1	0.365165917639896	3	1	961274	2	36	17	2	FALSE	GAIN	PASS
659_bTo_pair	CRTC2	1	153947669	153958625	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	17	2	FALSE	DIPLOID	PASS
659_bTo_pair	CRTC3	15	90529925	90645345	FALSE	927	-0.86531749998723	13	90191956	90642068	0.365165917639896	1	0	0.365165917639896	1	0	450112	1	11	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	CRX	19	47819779	47843330	FALSE	1187	-0.64296711085636	26	47021158	48297657	NA	2	NA	NA	2	NA	1276499	NA	31	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CRY1	12	106991364	107093829	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	CRY2	11	45847118	45883248	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	CRYAA	21	43169008	43172805	FALSE	1234	-0.544212636077936	27	41740855	44141314	1	2	1	1	2	1	2400459	1	31	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	CRYAB	11	111908565	111923722	FALSE	723	-0.542672588801529	29	108383083	111912852	NA	2	NA	NA	2	NA	3529769	NA	24	7	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	CRYBA1	17	29246863	29254494	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CRYBA2	2	218990189	218993421	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	CRYBA4	22	26621964	26630672	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	5	0	FALSE	CNLOH	PASS
659_bTo_pair	CRYBB1	22	26599278	26618088	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	5	0	FALSE	CNLOH	PASS
659_bTo_pair	CRYBB2	22	25219522	25231869	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	5	1	FALSE	CNLOH	PASS
659_bTo_pair	CRYBB3	22	25199850	25207363	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	6	0	FALSE	CNLOH	PASS
659_bTo_pair	CRYBG1	6	106360808	106571978	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	31	6	FALSE	DIPLOID	PASS
659_bTo_pair	CRYBG2	1	26321698	26360080	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	29	6	FALSE	DIPLOID	PASS
659_bTo_pair	CRYBG3	3	97822040	97944963	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	46	1	FALSE	GAIN	PASS
659_bTo_pair	CRYGA	2	208160740	208163576	FALSE	168	-0.499602545595775	30	203936898	208231285	1	2	1	1	2	1	4294387	1	25	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	CRYGB	2	208142573	208146168	FALSE	168	-0.499602545595775	30	203936898	208231285	1	2	1	1	2	1	4294387	1	25	4	2	FALSE	DIPLOID	PASS
659_bTo_pair	CRYGC	2	208128137	208129830	FALSE	168	-0.499602545595775	30	203936898	208231285	1	2	1	1	2	1	4294387	1	25	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	CRYGD	2	208121607	208124501	FALSE	168	-0.499602545595775	30	203936898	208231285	1	2	1	1	2	1	4294387	1	25	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	CRYGN	7	151428835	151440813	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	CRYGS	3	186538441	186546702	FALSE	263	-0.396590537714608	39	186161612	186743777	NA	2	NA	NA	2	NA	582165	NA	9	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CRYL1	13	20403666	20525873	FALSE	819	-0.883807164728579	13	19173884	20902691	0.365165917639896	1	0	0.365165917639896	1	0	1728807	1	14	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	CRYM	16	21238874	21303083	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	CRYZ	1	74705482	74733408	FALSE	25	-0.394411030612058	39	74026891	77942032	NA	2	NA	NA	2	NA	3915141	NA	22	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CRYZL1	21	33589341	33643926	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	CS	12	56271699	56300392	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CSAD	12	53157663	53180909	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	CSAG1	23	152727484	152733735	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	3	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	CSAG3	23	152753921	152760222	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	1	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	CSDC2	22	41560763	41577741	FALSE	1269	-0.443951758803067	34	41205309	42514754	NA	2	NA	NA	2	NA	1309445	NA	31	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CSDE1	1	114716913	114758676	FALSE	37	-0.781726809773331	16	114718157	116404480	0.365165917639896	1	0	0.365165917639896	1	0	1686323	1	12	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	CSE1L	20	49046246	49096960	FALSE	1216	-0.465272765977354	30	47658376	50278257	1	2	1	1	2	1	2619881	1	18	25	0	FALSE	DIPLOID	PASS
659_bTo_pair	CSF1	1	109910242	109930992	FALSE	34	0.98156262987494	78	109911033	109930828	0.364342740527346	11	NA	0.364342740527346	11	NA	19795	NA	1	23	4	FALSE	AMP	PASS
659_bTo_pair	CSF1R	5	150053291	150113372	FALSE	345	0.0943392822460777	59	150051901	150080724	0.308533751035793	5	NA	0.308533751035793	5	NA	28823	NA	2	30	0	TRUE	AMP (many states)	PASS
659_bTo_pair	CSF2	5	132073790	132076170	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	CSF2RB	22	36913628	36940449	FALSE	1262	1.95198395047925	102	36922243	36938619	0.364342740527346	26	NA	0.364342740527346	26	NA	16376	NA	1	19	1	FALSE	AMP	PASS
659_bTo_pair	CSF3	17	40015361	40017813	FALSE	1030	-0.735138103765796	19	39868404	40278196	0.365165917639896	1	0	0.365165917639896	1	0	409792	1	14	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	CSF3R	1	36466043	36483278	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	23	0	FALSE	DIPLOID	PASS
659_bTo_pair	CSGALNACT1	8	19404161	19758029	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	CSGALNACT2	10	43138486	43185308	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	11	0	FALSE	CNLOH	PASS
659_bTo_pair	CSH1	17	63894909	63896661	FALSE	1065	0.610950559170025	71	63880340	63941272	0.364342740527346	8	NA	0.364342740527346	8	NA	60932	NA	7	5	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	CSH2	17	63872012	63873766	FALSE	1064	-0.419094292936043	39	61867575	63873599	NA	2	NA	NA	2	NA	2006024	NA	24	5	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CSHL1	17	63909597	63918838	FALSE	1065	0.610950559170025	71	63880340	63941272	0.364342740527346	8	NA	0.364342740527346	8	NA	60932	NA	7	10	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	CSK	15	74782057	74803198	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	11	2	FALSE	HETLOSS	PASS
659_bTo_pair	CSKMT	11	62665309	62668496	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CSMD1	8	2935353	4994972	FALSE	510	-0.906181747703467	12	166288	7823395	0.365165917639896	1	0	0.365165917639896	1	0	7657107	1	48	75	5	FALSE	HETLOSS	PASS
659_bTo_pair	CSMD2	1	33513999	34165842	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	85	5	FALSE	DIPLOID	PASS
659_bTo_pair	CSMD3	8	112222928	113437099	FALSE	561	-0.210477706860293	47	102652438	116770243	0.365165917639896	3	1	0.365165917639896	3	1	14117805	2	32	87	6	FALSE	GAIN	PASS
659_bTo_pair	CSN1S1	4	69931081	69946574	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	CSN2	4	69955256	69961007	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	CSN3	4	70242588	70251428	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	CSNK1A1	5	149492197	149551552	FALSE	343	1.17111816741228	83	149493061	149609534	0.364342740527346	13	NA	0.364342740527346	13	NA	116473	NA	2	29	0	FALSE	AMP	PASS
659_bTo_pair	CSNK1A1L	13	37103259	37105664	FALSE	830	-0.745621963362667	19	32401848	39788354	0.365165917639896	1	0	0.365165917639896	1	0	7386506	1	30	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	CSNK1D	17	82239023	82273731	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	CSNK1E	22	38290691	38318084	FALSE	1265	-0.53141020507802	29	38041114	39152464	NA	2	NA	NA	2	NA	1111350	NA	31	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CSNK1G1	15	64165517	64356259	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	CSNK1G2	19	1941149	1981338	FALSE	1118	-0.58059819545476	23	1775405	2151345	0.186356639256811	1	0	0.186356639256811	1	0	375940	1	13	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	CSNK1G3	5	123512099	123617045	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	CSNK2A1	20	472498	543835	FALSE	1195	-0.60512265366003	23	87765	1537211	0.186356639256811	1	0	0.186356639256811	1	0	1449446	1	33	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	CSNK2A2	16	58157907	58197920	FALSE	972	-0.499158643645776	34	57931773	64947842	NA	2	NA	NA	2	NA	7016069	NA	18	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CSNK2A3	11	11351942	11353357	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	CSNK2B	6	31665236	31670343	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	CSPG4	15	75674322	75712848	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	32	0	FALSE	HETLOSS	PASS
659_bTo_pair	CSPG5	3	47562239	47580792	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	CSPP1	8	67062426	67196263	FALSE	550	-0.186881774239562	48	60208949	67746087	0.365165917639896	3	NA	0.365165917639896	3	NA	7537138	NA	33	31	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CSRNP1	3	39141855	39154562	FALSE	212	-0.750996176556328	19	38165958	40533064	0.365165917639896	1	0	0.365165917639896	1	0	2367106	1	26	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	CSRNP2	12	51061205	51083664	FALSE	772	-0.61197679162419	26	50109466	51920864	NA	2	NA	NA	2	NA	1811398	NA	27	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CSRNP3	2	165469647	165689407	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	CSRP1	1	201483530	201509456	FALSE	61	-0.50531963543648	34	201209721	201898337	NA	2	NA	NA	2	NA	688616	NA	11	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CSRP2	12	76858715	76879060	FALSE	793	-0.510041181295141	29	76355979	85286979	NA	2	NA	NA	2	NA	8931000	NA	22	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CSRP3	11	19182037	19210571	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	CST1	20	23747553	23751268	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	CST11	20	23450403	23452857	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	CST2	20	23823769	23826731	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	CST3	20	23626706	23638473	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	CST4	20	23685640	23689040	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	CST5	20	23875935	23879750	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	CST6	11	66011841	66013505	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	4	0	FALSE	GAIN	PASS
659_bTo_pair	CST7	20	24949230	24959928	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	CST8	20	23491101	23496018	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	CST9	20	23602410	23605876	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	CST9L	20	23564732	23568749	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	CSTA	3	122325244	122341972	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	3	0	FALSE	GAIN	PASS
659_bTo_pair	CSTB	21	43772511	43776445	FALSE	1234	-0.544212636077936	27	41740855	44141314	1	2	1	1	2	1	2400459	1	31	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	CSTF1	20	56392371	56406369	FALSE	1221	-0.44936578355072	34	56249153	58715213	NA	2	NA	NA	2	NA	2466060	NA	27	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CSTF2	23	100820359	100840932	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	15	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	CSTF2T	10	51695487	51699591	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	7	1	FALSE	CNLOH	PASS
659_bTo_pair	CSTF3	11	33077188	33162371	FALSE	692	-0.391103687852083	35	32583952	33774394	1	2	1	1	2	1	1190442	1	13	21	1	FALSE	DIPLOID	PASS
659_bTo_pair	CSTL1	20	23439685	23444930	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	CT45A1	23	135713453	135723539	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	1	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CT47B1	23	120872603	120875929	FALSE	1328	0.070674287613007	59	119603543	121049335	0.308533751035793	5	NA	0.308533751035793	5	NA	1445792	NA	34	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	CT55	23	135156536	135171398	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CT62	15	71110244	71115500	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	CT83	23	116461682	116463003	FALSE	1326	0.081501992784242	59	111246621	119452040	0.308533751035793	5	NA	0.308533751035793	5	NA	8205419	NA	28	3	0	FALSE	AMP (many states)	PASS
659_bTo_pair	CTAG2	23	154651972	154653579	FALSE	1341	-0.0231097163941018	55	154552015	155545250	0.328696605851359	4	NA	0.328696605851359	4	NA	993235	NA	23	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CTAGE1	18	22413601	22417915	FALSE	1091	0.432712712596202	66	22415585	22993850	0.364342740527346	7	NA	0.364342740527346	7	NA	578265	NA	2	9	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	CTAGE15	7	143571801	143574387	FALSE	503	-0.495530614890199	34	143026241	143572680	NA	2	NA	NA	2	NA	546439	NA	15	2	1	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	CTAGE4	7	144183466	144186053	FALSE	504	-0.812834819860627	15	143573123	148800568	0.21938209893867	0	0	0.21938209893867	0	0	5227445	0	25	3	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CTAGE6	7	143755089	143757696	FALSE	504	-0.812834819860627	15	143573123	148800568	0.21938209893867	0	0	0.21938209893867	0	0	5227445	0	25	5	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CTAGE8	7	144266701	144269288	FALSE	504	-0.812834819860627	15	143573123	148800568	0.21938209893867	0	0	0.21938209893867	0	0	5227445	0	25	2	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CTAGE9	6	131708684	131711017	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	CTBP1	4	1211448	1249953	FALSE	272	-0.300029378244858	40	85877	1745020	0.308149309490068	3	1	0.308149309490068	3	1	1659143	2	29	13	0	FALSE	GAIN	PASS
659_bTo_pair	CTBP2	10	124984317	125161170	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	18	4	FALSE	CNLOH	PASS
659_bTo_pair	CTBS	1	84549606	84574480	FALSE	27	-0.365760579101575	39	77969065	85252731	NA	2	NA	NA	2	NA	7283666	NA	23	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CTC1	17	8224821	8248095	FALSE	1005	-0.533729334585785	29	8204923	8370291	NA	2	NA	NA	2	NA	165368	NA	9	24	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CTCF	16	67562407	67639185	TRUE	978	1.55284836770677	91	67562690	67639032	0.364342740527346	19	NA	0.364342740527346	19	NA	76342	NA	1	23	0	FALSE	AMP	PASS
659_bTo_pair	CTCFL	20	57495966	57525652	FALSE	1221	-0.44936578355072	34	56249153	58715213	NA	2	NA	NA	2	NA	2466060	NA	27	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CTDNEP1	17	7243591	7252491	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	CTDP1	18	79679801	79756623	FALSE	1113	-0.883471952658051	12	75410842	80247341	0.365165917639896	1	0	0.365165917639896	1	0	4836499	1	17	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	CTDSP1	2	218398256	218405941	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	CTDSP2	12	57819927	57846739	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	CTDSPL	3	37861960	37984469	FALSE	210	-0.747326004597467	19	37329112	38136668	0.365165917639896	1	0	0.365165917639896	1	0	807556	1	7	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	CTDSPL2	15	44427234	44529038	FALSE	902	-0.672637691845835	22	43521582	44676538	0.291335969972972	1	0	0.291335969972972	1	0	1154956	1	21	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	CTF1	16	30896607	30903560	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	CTGF	6	131948176	131951373	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	CTH	1	70411218	70439851	FALSE	23	-0.326404897444941	43	65224778	71080923	0.192136715055622	3	NA	0.192136715055622	3	NA	5856145	NA	29	12	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CTHRC1	8	103371515	103382997	FALSE	561	-0.210477706860293	47	102652438	116770243	0.365165917639896	3	1	0.365165917639896	3	1	14117805	2	32	6	1	FALSE	GAIN	PASS
659_bTo_pair	CTIF	18	48539046	48863217	FALSE	1103	-0.712987700962632	19	48029643	51023578	0.365165917639896	1	0	0.365165917639896	1	0	2993935	1	20	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	CTLA4	2	203867771	203873965	FALSE	167	1.97540854365132	102	203867791	203873949	0.364342740527346	26	NA	0.364342740527346	26	NA	6158	NA	1	11	0	FALSE	AMP	PASS
659_bTo_pair	CTNNA1	5	138610967	138935034	FALSE	337	0.55019851258722	68	138753479	138951173	0.364342740527346	8	NA	0.364342740527346	8	NA	197694	NA	3	35	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	CTNNA2	2	79185231	80648861	FALSE	123	0.207940593066719	62	79122912	84431581	0.364342740527346	5	NA	0.364342740527346	5	NA	5308669	NA	5	29	0	FALSE	AMP (many states)	PASS
659_bTo_pair	CTNNA3	10	65912518	67696169	FALSE	649	-0.498971247588349	34	63133428	68527348	NA	2	NA	NA	2	NA	5393920	NA	15	29	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CTNNAL1	9	108942569	109013529	FALSE	613	-0.484018775274725	34	108869192	109119647	NA	2	NA	NA	2	NA	250455	NA	4	19	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CTNNB1	3	41194741	41260096	FALSE	213	1.46497117754362	90	41194775	41240394	0.364342740527346	17	NA	0.364342740527346	17	NA	45619	NA	1	37	5	TRUE	AMP	PASS
659_bTo_pair	CTNNBIP1	1	9848276	9910336	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	CTNNBL1	20	37693955	37872129	FALSE	1205	-0.619744376635615	23	37518926	41023791	0.186356639256811	1	0	0.186356639256811	1	0	3504865	1	19	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	CTNND1	11	57753243	57819546	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	23	0	FALSE	GAIN	PASS
659_bTo_pair	CTNND2	5	10971840	11904043	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	26	2	FALSE	GAIN	PASS
659_bTo_pair	CTNS	17	3636468	3661542	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	11	2	FALSE	HETLOSS	PASS
659_bTo_pair	CTPS1	1	40979335	41012565	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	17	1	FALSE	DIPLOID	PASS
659_bTo_pair	CTPS2	23	16588003	16712936	FALSE	1276	0.0763243231691416	59	15827382	20064777	0.308533751035793	5	NA	0.308533751035793	5	NA	4237395	NA	24	19	1	FALSE	AMP (many states)	PASS
659_bTo_pair	CTR9	11	10750987	10801625	TRUE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	34	0	FALSE	DIPLOID	PASS
659_bTo_pair	CTRB1	16	75219000	75226338	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	CTRB2	16	75204096	75207185	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	CTRC	1	15438439	15449242	FALSE	6	-0.41295085321191	39	13779356	15847467	NA	2	NA	NA	2	NA	2068111	NA	18	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CTRL	16	67927640	67932414	FALSE	979	-0.429457644119204	34	67645299	68698317	NA	2	NA	NA	2	NA	1053018	NA	33	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CTSA	20	45890144	45898820	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	CTSB	8	11842524	11869448	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	CTSC	11	88293592	88337787	FALSE	714	-0.230278951577934	46	86306357	90211282	0.298322295679939	3	NA	0.298322295679939	3	NA	3904925	NA	21	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CTSD	11	1752752	1764573	FALSE	679	-0.702000712925199	21	1256247	1938477	0.140309795179477	0	0	0.140309795179477	0	0	682230	0	19	11	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CTSE	1	206009264	206023909	FALSE	69	-0.48847123055109	34	205798087	206732058	NA	2	NA	NA	2	NA	933971	NA	14	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CTSF	11	66563463	66568841	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	13	2	FALSE	GAIN	PASS
659_bTo_pair	CTSG	14	24573522	24576260	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	CTSH	15	78921058	78949574	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	12	3	FALSE	HETLOSS	PASS
659_bTo_pair	CTSK	1	150796208	150808323	FALSE	47	-0.642778549638746	26	150622836	150876589	NA	2	NA	NA	2	NA	253753	NA	6	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CTSL	9	87725519	87731393	FALSE	604	-0.547885090101936	27	85547201	90613824	1	2	1	1	2	1	5066623	1	21	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	CTSO	4	155924118	155953917	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	CTSS	1	150730196	150765957	FALSE	47	-0.642778549638746	26	150622836	150876589	NA	2	NA	NA	2	NA	253753	NA	6	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CTSV	9	97029679	97039643	FALSE	608	-0.541405085979946	27	95522076	99069752	1	2	1	1	2	1	3547676	1	31	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	CTSW	11	65879809	65883741	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	9	2	FALSE	GAIN	PASS
659_bTo_pair	CTSZ	20	58995185	59007247	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	CTTN	11	70398404	70436584	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	20	0	FALSE	GAIN	PASS
659_bTo_pair	CTTNBP2	7	117710651	117874139	FALSE	490	-0.576498321273708	26	116888215	124790543	NA	2	NA	NA	2	NA	7902328	NA	33	32	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CTTNBP2NL	1	112396181	112463456	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	CTU1	19	51097606	51108370	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	CTU2	16	88706463	88715386	FALSE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	16	6	FALSE	HETLOSS	PASS
659_bTo_pair	CTXN1	19	7924485	7926166	FALSE	1132	-0.583194501817822	26	7916513	8843246	NA	2	NA	NA	2	NA	926733	NA	25	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CTXN2	15	48178122	48203756	FALSE	904	-0.666047806656427	20	44736698	49422632	0.365165917639896	1	0	0.365165917639896	1	0	4685934	1	30	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	CTXN3	5	127649044	127658630	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	CTXND1	15	80195484	80252213	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	1	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CUBN	10	16823966	17129817	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	69	9	FALSE	CNLOH	PASS
659_bTo_pair	CUEDC1	17	57861243	57955323	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CUEDC2	10	102423245	102432661	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	7	2	FALSE	CNLOH	PASS
659_bTo_pair	CUL1	7	148697914	148801036	FALSE	504	-0.812834819860627	15	143573123	148800568	0.21938209893867	0	0	0.21938209893867	0	0	5227445	0	25	21	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CUL2	10	35008551	35090642	FALSE	640	-0.421497241268382	32	32269100	43094667	0.365165917639896	2	0	0.365165917639896	2	0	10825567	2	20	21	4	FALSE	CNLOH	PASS
659_bTo_pair	CUL3	2	224470150	224585397	FALSE	182	2.05887848751735	105	224470272	224473061	0.364342740527346	28	NA	0.364342740527346	28	NA	2789	NA	1	38	11	TRUE	AMP	PASS
659_bTo_pair	CUL4A	13	113208193	113267108	FALSE	844	-0.576217954819194	24	110150427	113263496	0.359751661895656	2	0	0.359751661895656	2	0	3113069	2	19	22	2	FALSE	CNLOH	PASS
659_bTo_pair	CUL4B	23	120524609	120575794	FALSE	1328	0.070674287613007	59	119603543	121049335	0.308533751035793	5	NA	0.308533751035793	5	NA	1445792	NA	34	24	1	FALSE	AMP (many states)	PASS
659_bTo_pair	CUL5	11	108008733	108107776	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	19	2	FALSE	HETLOSS	PASS
659_bTo_pair	CUL7	6	43037617	43053945	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	32	2	FALSE	DIPLOID	PASS
659_bTo_pair	CUL9	6	43182175	43224587	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	48	2	FALSE	DIPLOID	PASS
659_bTo_pair	CUTA	6	33416442	33418317	FALSE	391	-0.499783837646083	34	33391964	35241176	NA	2	NA	NA	2	NA	1849212	NA	26	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CUTC	10	99702558	99756134	FALSE	666	-0.516928660882684	29	98163350	100063639	NA	2	NA	NA	2	NA	1900289	NA	16	21	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CUX1	7	101815904	102283958	TRUE	484	-0.570670723449775	26	101042591	102111653	NA	2	NA	NA	2	NA	1069062	NA	15	80	6	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	CUX2	12	111034024	111350554	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	31	0	FALSE	DIPLOID	PASS
659_bTo_pair	CUZD1	10	122832149	122850793	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	14	0	FALSE	CNLOH	PASS
659_bTo_pair	CWC15	11	94962622	94973612	FALSE	717	-0.427991611956568	34	94512673	100992623	NA	2	NA	NA	2	NA	6479950	NA	19	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CWC22	2	179944876	180007113	FALSE	155	-0.524315670340053	27	177420364	181062892	1	2	1	1	2	1	3642528	1	16	22	3	FALSE	DIPLOID	PASS
659_bTo_pair	CWC25	17	38800434	38825481	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	10	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CWC27	5	64768930	65018763	FALSE	323	-0.645106866010582	25	58495036	67196614	0.365165917639896	1	0	0.365165917639896	1	0	8701578	1	31	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	CWF19L1	10	100232298	100267680	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	14	4	FALSE	CNLOH	PASS
659_bTo_pair	CWF19L2	11	107326345	107457844	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	20	2	FALSE	HETLOSS	PASS
659_bTo_pair	CWH43	4	48986247	49062081	FALSE	282	-0.204234033978701	47	41752697	49032685	0.365165917639896	3	1	0.365165917639896	3	1	7279988	2	31	17	2	TRUE	GAIN	PASS
659_bTo_pair	CX3CL1	16	57372458	57385048	FALSE	971	-0.537344591536493	29	57069860	57923335	NA	2	NA	NA	2	NA	853475	NA	21	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CX3CR1	3	39263494	39281735	FALSE	212	-0.750996176556328	19	38165958	40533064	0.365165917639896	1	0	0.365165917639896	1	0	2367106	1	26	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	CXADR	21	17512382	17593579	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	9	2	FALSE	DIPLOID	PASS
659_bTo_pair	CXCL1	4	73869393	73871242	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	CXCL10	4	76021117	76023497	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	CXCL11	4	76033682	76041415	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	CXCL12	10	44370165	44386493	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	7	0	FALSE	CNLOH	PASS
659_bTo_pair	CXCL13	4	77511753	77611834	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CXCL14	5	135570679	135579279	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	CXCL16	17	4733526	4739922	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	6	2	FALSE	HETLOSS	PASS
659_bTo_pair	CXCL17	19	42428288	42443048	FALSE	1179	-0.582084941516902	26	42297317	43535595	NA	2	NA	NA	2	NA	1238278	NA	25	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CXCL2	4	74097035	74099293	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	CXCL3	4	74036589	74038807	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	CXCL5	4	73995642	73998779	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	CXCL6	4	73836497	73849064	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	CXCL8	4	73740506	73743716	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	CXCL9	4	76001275	76007488	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	CXCR1	2	218162845	218166995	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	CXCR2	2	218125289	218137253	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	CXCR3	23	71615916	71618517	FALSE	1317	0.217996879888221	62	71533297	76176924	0.364342740527346	5	NA	0.364342740527346	5	NA	4643627	NA	35	6	0	FALSE	AMP (many states)	PASS
659_bTo_pair	CXCR4	2	136114349	136118165	FALSE	144	2.36928986997555	111	136114456	136119015	0.364342740527346	35	NA	0.364342740527346	35	NA	4559	NA	1	13	1	FALSE	AMP	PASS
659_bTo_pair	CXCR5	11	118883766	118897799	FALSE	728	-0.487905654975058	30	118527582	119195409	1	2	1	1	2	1	667827	1	26	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CXCR6	3	45940933	45948353	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	CXXC1	18	50282343	50288304	FALSE	1103	-0.712987700962632	19	48029643	51023578	0.365165917639896	1	0	0.365165917639896	1	0	2993935	1	20	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	CXXC4	4	104468312	104494901	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CXXC5	5	139647299	139683882	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	5	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CXorf21	23	30558824	30577844	FALSE	1282	-0.198839212217093	48	28789325	33339312	0.365165917639896	3	NA	0.365165917639896	3	NA	4549987	NA	11	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CXorf36	23	45148374	45200901	FALSE	1292	0.0982305969328026	59	45151653	47144467	0.308533751035793	5	NA	0.308533751035793	5	NA	1992814	NA	9	10	0	FALSE	AMP (many states)	PASS
659_bTo_pair	CXorf38	23	40626921	40647554	FALSE	1288	0.0977543403034234	59	40162702	41232378	0.308533751035793	5	NA	0.308533751035793	5	NA	1069676	NA	6	7	0	FALSE	AMP (many states)	PASS
659_bTo_pair	CXorf40A	23	149540355	149550510	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	6	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	CXorf40B	23	149929527	149938811	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	5	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	CXorf56	23	119538149	119565408	FALSE	1327	1.0307148866152	81	119453040	119592470	0.364342740527346	12	NA	0.364342740527346	12	NA	139430	NA	5	7	1	FALSE	AMP	PASS
659_bTo_pair	CXorf57	23	106611930	106679442	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	17	0	FALSE	AMP (many states)	PASS
659_bTo_pair	CXorf58	23	23907801	23939509	FALSE	1278	-0.021616497728569	55	20155391	23935235	0.328696605851359	4	NA	0.328696605851359	4	NA	3779844	NA	16	8	0	TRUE	GAIN (many states)	PASS
659_bTo_pair	CXorf65	23	71103889	71106788	FALSE	1313	0.277003378144951	63	70925855	71111565	0.364342740527346	6	NA	0.364342740527346	6	NA	185710	NA	6	6	0	FALSE	AMP (many states)	PASS
659_bTo_pair	CXorf66	23	139955725	139965520	FALSE	1338	0.767200084690243	74	139931991	141176986	0.364342740527346	9	NA	0.364342740527346	9	NA	1244995	NA	6	6	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	CXorf67	23	51406915	51408843	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	7	0	FALSE	AMP (many states)	PASS
659_bTo_pair	CYB561	17	63432304	63446378	FALSE	1064	-0.419094292936043	39	61867575	63873599	NA	2	NA	NA	2	NA	2006024	NA	24	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CYB561A3	11	61348745	61362299	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	9	0	FALSE	GAIN	PASS
659_bTo_pair	CYB561D1	1	109494052	109502932	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	CYB561D2	3	50350695	50358460	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	CYB5A	18	74250847	74292016	FALSE	1111	-0.872352968035647	12	63331800	74584528	0.365165917639896	1	0	0.365165917639896	1	0	11252728	1	31	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	CYB5B	16	69424525	69466266	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CYB5D1	17	7857746	7862282	FALSE	1002	-0.806633716627379	14	7689340	8047671	0.365165917639896	1	0	0.365165917639896	1	0	358331	1	15	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	CYB5D2	17	4143168	4187310	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	20	2	FALSE	HETLOSS	PASS
659_bTo_pair	CYB5R1	1	202961869	202967280	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	9	2	FALSE	DIPLOID	PASS
659_bTo_pair	CYB5R2	11	7665100	7677222	FALSE	683	-0.403180715137318	35	6615199	8138345	1	2	1	1	2	1	1523146	1	28	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	CYB5R3	22	42617840	42649568	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	13	0	FALSE	CNLOH	PASS
659_bTo_pair	CYB5R4	6	83859643	83967424	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	CYB5RL	1	54169651	54200036	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CYBA	16	88643283	88651152	FALSE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	CYBB	23	37780011	37813461	FALSE	1286	-0.229369008369366	46	37655739	38687617	0.298322295679939	3	NA	0.298322295679939	3	NA	1031878	NA	12	13	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CYBC1	17	82442589	82450829	FALSE	1085	-0.607666454607286	26	82405295	83094473	NA	2	NA	NA	2	NA	689178	NA	13	6	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CYBRD1	2	171522247	171558133	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	CYC1	8	144095027	144097525	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	CYCS	7	25120091	25125361	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	2	0	FALSE	GAIN	PASS
659_bTo_pair	CYFIP1	15	22867052	22981063	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	34	1	FALSE	HETLOSS	PASS
659_bTo_pair	CYFIP2	5	157266079	157395595	FALSE	353	-0.698571741790457	22	157138801	161546576	0.291335969972972	1	0	0.291335969972972	1	0	4407775	1	29	35	4	FALSE	HETLOSS	PASS
659_bTo_pair	CYGB	17	76527356	76551175	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	CYHR1	8	144449582	144465677	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	CYLC1	23	83861126	83886699	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	11	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	CYLC2	9	102995311	103018488	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	CYLD	16	50742050	50801935	TRUE	967	0.500726112014677	68	50742104	51142141	0.364342740527346	7	NA	0.364342740527346	7	NA	400037	NA	2	29	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	CYP11A1	15	74337759	74367740	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	CYP11B1	8	142872356	142879846	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	10	2	FALSE	DIPLOID	PASS
659_bTo_pair	CYP11B2	8	142910559	142917843	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	10	4	FALSE	DIPLOID	PASS
659_bTo_pair	CYP17A1	10	102830531	102837533	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	10	1	FALSE	CNLOH	PASS
659_bTo_pair	CYP19A1	15	51208057	51338610	FALSE	907	1.8497549684966	100	51208277	51338597	0.364342740527346	24	NA	0.364342740527346	24	NA	130320	NA	1	28	8	FALSE	AMP	PASS
659_bTo_pair	CYP1A1	15	74719542	74725610	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	CYP1A2	15	74748844	74756202	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	CYP1B1	2	38066973	38109902	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	9	3	FALSE	DIPLOID	PASS
659_bTo_pair	CYP20A1	2	203238940	203305611	FALSE	166	-0.425780118113581	30	201288659	203854096	1	2	1	1	2	1	2565437	1	22	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	CYP21A2	6	32038265	32041670	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	10	3	FALSE	HETLOSS	PASS
659_bTo_pair	CYP24A1	20	54153449	54173973	FALSE	1220	-1.01213938040689	8	53953522	56248828	0.342391532111247	0	0	0.342391532111247	0	0	2295306	0	6	12	1	FALSE	HOMDEL	PASS
659_bTo_pair	CYP26A1	10	93073475	93077890	FALSE	662	-0.410954559094016	36	89715119	94762760	0.365165917639896	2	0	0.365165917639896	2	0	5047641	2	33	10	0	FALSE	CNLOH	PASS
659_bTo_pair	CYP26B1	2	72129238	72148038	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	CYP26C1	10	93060808	93069536	FALSE	662	-0.410954559094016	36	89715119	94762760	0.365165917639896	2	0	0.365165917639896	2	0	5047641	2	33	10	0	FALSE	CNLOH	PASS
659_bTo_pair	CYP27A1	2	218781749	218815293	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	CYP27B1	12	57762334	57768986	FALSE	785	1.00272948497916	80	57748192	57766041	0.364342740527346	12	NA	0.364342740527346	12	NA	17849	NA	4	11	1	TRUE	AMP	PASS
659_bTo_pair	CYP27C1	2	127184120	127220078	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	CYP2A13	19	41088472	41096195	FALSE	1174	-0.111410976880113	53	40843904	41261582	0.273255132087987	4	NA	0.273255132087987	4	NA	417678	NA	8	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CYP2A6	19	40843538	40850447	FALSE	1174	-0.111410976880113	53	40843904	41261582	0.273255132087987	4	NA	0.273255132087987	4	NA	417678	NA	8	9	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	CYP2A7	19	40875439	40882752	FALSE	1174	-0.111410976880113	53	40843904	41261582	0.273255132087987	4	NA	0.273255132087987	4	NA	417678	NA	8	9	6	FALSE	GAIN (many states)	PASS
659_bTo_pair	CYP2B6	19	40991250	41018398	FALSE	1174	-0.111410976880113	53	40843904	41261582	0.273255132087987	4	NA	0.273255132087987	4	NA	417678	NA	8	9	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	CYP2C18	10	94683621	94736190	FALSE	662	-0.410954559094016	36	89715119	94762760	0.365165917639896	2	0	0.365165917639896	2	0	5047641	2	33	9	1	FALSE	CNLOH	PASS
659_bTo_pair	CYP2C19	10	94762681	94853205	FALSE	662	-0.410954559094016	36	89715119	94762760	0.365165917639896	2	0	0.365165917639896	2	0	5047641	2	33	9	2	TRUE	CNLOH	PASS
659_bTo_pair	CYP2C8	10	95036772	95069497	FALSE	663	-0.556688707084635	24	94775074	96952170	0.359751661895656	2	0	0.359751661895656	2	0	2177096	2	21	9	1	FALSE	CNLOH	PASS
659_bTo_pair	CYP2C9	10	94938658	94989391	FALSE	663	-0.556688707084635	24	94775074	96952170	0.359751661895656	2	0	0.359751661895656	2	0	2177096	2	21	9	0	FALSE	CNLOH	PASS
659_bTo_pair	CYP2D6	22	42126499	42130906	FALSE	1269	-0.443951758803067	34	41205309	42514754	NA	2	NA	NA	2	NA	1309445	NA	31	10	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CYP2E1	10	133520406	133561220	FALSE	676	-0.612597388333807	25	132187132	133626712	0.365165917639896	1	0	0.365165917639896	1	0	1439580	1	27	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	CYP2F1	19	41114432	41128366	FALSE	1174	-0.111410976880113	53	40843904	41261582	0.273255132087987	4	NA	0.273255132087987	4	NA	417678	NA	8	9	3	FALSE	GAIN (many states)	PASS
659_bTo_pair	CYP2J2	1	59893308	59926790	FALSE	21	-0.414935064922519	39	59321678	64830856	NA	2	NA	NA	2	NA	5509178	NA	22	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CYP2R1	11	14877440	14892252	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	CYP2S1	19	41193049	41207539	FALSE	1174	-0.111410976880113	53	40843904	41261582	0.273255132087987	4	NA	0.273255132087987	4	NA	417678	NA	8	11	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CYP2U1	4	107931369	107953457	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	CYP2W1	7	983199	989640	FALSE	450	-0.329551508654045	40	193185	2379492	0.308149309490068	3	1	0.308149309490068	3	1	2186307	2	26	11	2	FALSE	GAIN	PASS
659_bTo_pair	CYP39A1	6	46549580	46652830	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	CYP3A4	7	99756960	99784265	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	CYP3A43	7	99828013	99866102	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	CYP3A5	7	99648194	99680026	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	CYP3A7	7	99684957	99735196	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	CYP3A7-CYP3A51P	7	99685226	99735093	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	CYP46A1	14	99684304	99727301	FALSE	876	-0.546199181806584	27	96039535	102050530	1	2	1	1	2	1	6010995	1	30	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	CYP4A11	1	46929177	46941484	FALSE	16	-0.485631979032023	30	46175602	48453048	1	2	1	1	2	1	2277446	1	32	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	CYP4A22	1	47137435	47149741	FALSE	16	-0.485631979032023	30	46175602	48453048	1	2	1	1	2	1	2277446	1	32	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	CYP4B1	1	46757838	46819413	FALSE	16	-0.485631979032023	30	46175602	48453048	1	2	1	1	2	1	2277446	1	32	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	CYP4F11	19	15912367	15934867	FALSE	1151	-0.245775583538201	44	15355095	15913929	0.345317016959666	3	1	0.345317016959666	3	1	558834	2	15	14	3	TRUE	GAIN	PASS
659_bTo_pair	CYP4F12	19	15672757	15697174	FALSE	1151	-0.245775583538201	44	15355095	15913929	0.345317016959666	3	1	0.345317016959666	3	1	558834	2	15	13	0	FALSE	GAIN	PASS
659_bTo_pair	CYP4F2	19	15878023	15898120	FALSE	1151	-0.245775583538201	44	15355095	15913929	0.345317016959666	3	1	0.345317016959666	3	1	558834	2	15	14	2	FALSE	GAIN	PASS
659_bTo_pair	CYP4F22	19	15508493	15552317	FALSE	1151	-0.245775583538201	44	15355095	15913929	0.345317016959666	3	1	0.345317016959666	3	1	558834	2	15	14	1	FALSE	GAIN	PASS
659_bTo_pair	CYP4F3	19	15640897	15662825	FALSE	1151	-0.245775583538201	44	15355095	15913929	0.345317016959666	3	1	0.345317016959666	3	1	558834	2	15	15	4	FALSE	GAIN	PASS
659_bTo_pair	CYP4F8	19	15615218	15630638	FALSE	1151	-0.245775583538201	44	15355095	15913929	0.345317016959666	3	1	0.345317016959666	3	1	558834	2	15	13	1	FALSE	GAIN	PASS
659_bTo_pair	CYP4V2	4	186191520	186213456	FALSE	305	-0.853036814117495	12	184629284	186555336	0.365165917639896	1	0	0.365165917639896	1	0	1926052	1	22	11	4	FALSE	HETLOSS	PASS
659_bTo_pair	CYP4X1	1	47023568	47050751	FALSE	16	-0.485631979032023	30	46175602	48453048	1	2	1	1	2	1	2277446	1	32	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	CYP4Z1	1	47067488	47118319	FALSE	16	-0.485631979032023	30	46175602	48453048	1	2	1	1	2	1	2277446	1	32	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	CYP51A1	7	92112151	92134803	FALSE	479	-0.448308050861149	30	87602941	92590330	1	2	1	1	2	1	4987389	1	30	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	CYP7A1	8	58490178	58500236	FALSE	548	-0.313898052002086	43	56168306	58659618	0.192136715055622	3	NA	0.192136715055622	3	NA	2491312	NA	10	10	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CYP7B1	8	64587763	64798761	FALSE	550	-0.186881774239562	48	60208949	67746087	0.365165917639896	3	NA	0.365165917639896	3	NA	7537138	NA	33	11	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	CYP8B1	3	42856005	42876165	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	CYR61	1	85580761	85583962	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	CYREN	7	135092363	135170795	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	CYS1	2	10056780	10080944	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	CYSLTR1	23	78271464	78327691	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	5	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	CYSLTR2	13	48653711	48711226	FALSE	835	-0.766581964775609	19	48490223	50953919	0.365165917639896	1	0	0.365165917639896	1	0	2463696	1	18	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	CYSRT1	9	137224635	137226311	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	CYSTM1	5	140174642	140282052	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	4	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	CYTH1	17	78674048	78782297	FALSE	1080	-0.537824093701074	27	76741010	78870935	1	2	1	1	2	1	2129925	1	20	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	CYTH2	19	48469032	48482314	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	CYTH3	7	6161776	6272644	FALSE	456	-0.240618790532325	45	6028682	12688782	0.279823559258657	3	0	0.279823559258657	3	0	6660100	3	32	13	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	CYTH4	22	37282027	37315345	FALSE	1263	-0.528184158498335	29	36991204	37967644	NA	2	NA	NA	2	NA	976440	NA	31	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	CYTIP	2	157414619	157488961	FALSE	149	-0.454179855872301	30	147845197	157628657	1	2	1	1	2	1	9783460	1	30	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	CYTL1	4	5014586	5019472	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	4	0	FALSE	GAIN	PASS
659_bTo_pair	CYYR1	21	26466209	26573284	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	D2HGDH	2	241734579	241768816	FALSE	194	-0.588828356865968	23	240025214	241817025	0.186356639256811	1	0	0.186356639256811	1	0	1791811	1	34	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	DAAM1	14	59188646	59371405	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	27	0	FALSE	DIPLOID	PASS
659_bTo_pair	DAAM2	6	39792298	39904877	FALSE	397	-0.509151429367598	27	37213022	41687167	1	2	1	1	2	1	4474145	1	33	27	1	FALSE	DIPLOID	PASS
659_bTo_pair	DAB1	1	56994778	58546734	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	25	1	FALSE	DIPLOID	PASS
659_bTo_pair	DAB2	5	39371675	39462300	FALSE	316	-0.143574193475256	49	39021030	43704252	0.365165917639896	3	1	0.365165917639896	3	1	4683222	2	28	17	3	FALSE	GAIN	PASS
659_bTo_pair	DAB2IP	9	121567057	121785530	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	22	0	TRUE	DIPLOID	PASS
659_bTo_pair	DACH1	13	71437966	71867192	FALSE	836	-0.444239733377228	32	50956423	72747004	0.365165917639896	2	0	0.365165917639896	2	0	21790581	2	40	15	0	FALSE	CNLOH	PASS
659_bTo_pair	DACH2	23	86148458	86832604	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	14	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	DACT1	14	58633967	58648321	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	DACT2	6	168292830	168319754	FALSE	449	-0.520973998932362	27	167374374	170584540	1	2	1	1	2	1	3210166	1	18	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	DACT3	19	46647612	46661138	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	9	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	DAD1	14	22564905	22589269	FALSE	849	-0.198876830204613	48	21522824	22901846	0.365165917639896	3	NA	0.365165917639896	3	NA	1379022	NA	15	2	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	DAG1	3	49468703	49535618	FALSE	218	-0.900819276070563	13	49413105	49683092	0.365165917639896	1	0	0.365165917639896	1	0	269987	1	7	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	DAGLA	11	61680433	61747001	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	24	1	FALSE	GAIN	PASS
659_bTo_pair	DAGLB	7	6409126	6484190	FALSE	456	-0.240618790532325	45	6028682	12688782	0.279823559258657	3	0	0.279823559258657	3	0	6660100	3	32	23	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	DALRD3	3	49015488	49022293	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	DAND5	19	12965159	12974762	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	DAO	12	108858932	108901043	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	DAOA	13	105465867	105491034	FALSE	842	-0.555564796404534	26	103046205	109206791	NA	2	NA	NA	2	NA	6160586	NA	9	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DAP	5	10679230	10761272	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	5	0	FALSE	GAIN	PASS
659_bTo_pair	DAP3	1	155687960	155739010	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	DAPK1	9	87497228	87708633	FALSE	604	-0.547885090101936	27	85547201	90613824	1	2	1	1	2	1	5066623	1	21	29	1	FALSE	DIPLOID	PASS
659_bTo_pair	DAPK2	15	63907036	64072033	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	DAPK3	19	3958453	3971123	FALSE	1122	-0.653400653967241	21	3157829	4037863	0.140309795179477	0	0	0.140309795179477	0	0	880034	0	27	11	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	DAPL1	2	158795317	158862781	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	DAPP1	4	99816833	99870154	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	10	3	FALSE	DIPLOID	PASS
659_bTo_pair	DARS	2	135906677	135986100	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	DARS2	1	173824568	173858808	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	DAW1	2	227871054	227924344	FALSE	186	-0.695736902539597	22	226867246	227993567	0.291335969972972	1	0	0.291335969972972	1	0	1126321	1	19	13	2	FALSE	HETLOSS	PASS
659_bTo_pair	DAXX	6	33318558	33323016	TRUE	390	2.37100587204089	111	33318681	33323048	0.364342740527346	35	NA	0.364342740527346	35	NA	4367	NA	2	12	1	FALSE	AMP	PASS
659_bTo_pair	DAZAP1	19	1407569	1435687	FALSE	1116	-0.668595541323287	22	1229189	1605424	0.291335969972972	1	0	0.291335969972972	1	0	376235	1	21	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	DAZAP2	12	51238292	51271362	FALSE	772	-0.61197679162419	26	50109466	51920864	NA	2	NA	NA	2	NA	1811398	NA	27	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DAZL	3	16586792	16670306	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	12	4	FALSE	HETLOSS	PASS
659_bTo_pair	DBF4	7	87876216	87909541	FALSE	479	-0.448308050861149	30	87602941	92590330	1	2	1	1	2	1	4987389	1	30	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	DBF4B	17	44708608	44752264	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DBH	9	133635348	133659344	FALSE	627	-0.867007674319489	12	132986776	134157867	0.365165917639896	1	0	0.365165917639896	1	0	1171091	1	28	16	1	FALSE	HETLOSS	PASS
659_bTo_pair	DBI	2	119366921	119372560	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	DBN1	5	177456608	177474401	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	DBNDD1	16	90004865	90020128	FALSE	995	-0.522225769981002	29	89949539	90075863	NA	2	NA	NA	2	NA	126324	NA	5	8	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DBNDD2	20	45406057	45410610	FALSE	1213	-0.238233999759016	46	45348351	45515632	0.298322295679939	3	NA	0.298322295679939	3	NA	167281	NA	8	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	DBNL	7	44044640	44069456	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	17	2	FALSE	GAIN	PASS
659_bTo_pair	DBP	19	48630030	48637438	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	DBR1	3	138161012	138174949	FALSE	244	-0.465451876797886	34	136855703	138629155	NA	2	NA	NA	2	NA	1773452	NA	14	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DBT	1	100186919	100249834	FALSE	31	-0.34979279123772	43	94820443	100270584	0.192136715055622	3	NA	0.192136715055622	3	NA	5450141	NA	22	11	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	DBX1	11	20156155	20160613	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	DBX2	12	45014672	45051099	FALSE	764	-0.478463991093384	34	40959192	45805435	NA	2	NA	NA	2	NA	4846243	NA	16	6	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DCAF1	3	51395867	51500002	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	28	0	FALSE	HETLOSS	PASS
659_bTo_pair	DCAF10	9	37800502	37867666	FALSE	595	-0.209027397852981	47	37442028	67884575	0.365165917639896	3	1	0.365165917639896	3	1	30442547	2	35	11	0	FALSE	GAIN	PASS
659_bTo_pair	DCAF11	14	24114195	24125242	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	DCAF12	9	34086387	34127399	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	10	3	FALSE	CNLOH	PASS
659_bTo_pair	DCAF12L1	23	126549383	126552851	FALSE	1332	1.14642858197369	83	125320240	126552560	0.364342740527346	13	NA	0.364342740527346	13	NA	1232320	NA	3	6	0	FALSE	AMP	PASS
659_bTo_pair	DCAF12L2	23	126163499	126166097	FALSE	1332	1.14642858197369	83	125320240	126552560	0.364342740527346	13	NA	0.364342740527346	13	NA	1232320	NA	3	6	2	FALSE	AMP	PASS
659_bTo_pair	DCAF13	8	103414714	103443453	FALSE	561	-0.210477706860293	47	102652438	116770243	0.365165917639896	3	1	0.365165917639896	3	1	14117805	2	32	13	3	FALSE	GAIN	PASS
659_bTo_pair	DCAF15	19	13952492	13961449	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	14	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	DCAF16	4	17800655	17810758	FALSE	277	0.271123815908725	63	17633730	20704492	0.364342740527346	6	NA	0.364342740527346	6	NA	3070762	NA	7	3	0	FALSE	AMP (many states)	PASS
659_bTo_pair	DCAF17	2	171434217	171485052	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	DCAF4	14	72926332	72959703	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	DCAF4L1	4	41981696	41986467	FALSE	282	-0.204234033978701	47	41752697	49032685	0.365165917639896	3	1	0.365165917639896	3	1	7279988	2	31	5	0	FALSE	GAIN	PASS
659_bTo_pair	DCAF4L2	8	87870743	87874068	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	5	0	FALSE	GAIN	PASS
659_bTo_pair	DCAF5	14	69050881	69153150	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	DCAF6	1	167935783	168075843	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	25	2	FALSE	DIPLOID	PASS
659_bTo_pair	DCAF7	17	63550461	63594266	FALSE	1064	-0.419094292936043	39	61867575	63873599	NA	2	NA	NA	2	NA	2006024	NA	24	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DCAF8	1	160215715	160262531	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	DCAF8L1	23	27977993	27981449	FALSE	1281	0.662601706370604	72	25004702	27981233	0.364342740527346	8	NA	0.364342740527346	8	NA	2976531	NA	9	7	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	DCAF8L2	23	27590382	27748821	FALSE	1281	0.662601706370604	72	25004702	27981233	0.364342740527346	8	NA	0.364342740527346	8	NA	2976531	NA	9	7	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	DCAKD	17	45023340	45061109	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DCANP1	5	135444214	135447348	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	DCBLD1	6	117453817	117569858	FALSE	421	-0.534093125771784	29	117482879	126348569	NA	2	NA	NA	2	NA	8865690	NA	29	17	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DCBLD2	3	98795941	98901689	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	19	0	FALSE	GAIN	PASS
659_bTo_pair	DCC	18	52340172	53535903	FALSE	1104	0.400415307174904	66	51028378	52340795	0.364342740527346	6	NA	0.364342740527346	6	NA	1312417	NA	4	31	3	TRUE	AMP (many states)	PASS
659_bTo_pair	DCD	12	54644591	54648493	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	DCDC1	11	30830369	31369810	FALSE	690	-0.499672577426227	34	26697185	32104345	NA	2	NA	NA	2	NA	5407160	NA	20	37	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DCDC2	6	24171756	24358052	FALSE	373	-0.695027086668472	22	24174718	26017145	0.291335969972972	1	0	0.291335969972972	1	0	1842427	1	23	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	DCDC2B	1	32209094	32216196	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	DCDC2C	2	3703592	3847411	FALSE	89	-0.524158836377085	27	41620	3847167	1	2	1	1	2	1	3805547	1	18	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	DCHS1	11	6621323	6655854	FALSE	683	-0.403180715137318	35	6615199	8138345	1	2	1	1	2	1	1523146	1	28	47	6	FALSE	DIPLOID	PASS
659_bTo_pair	DCHS2	4	154231742	154495570	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	58	5	FALSE	HETLOSS	PASS
659_bTo_pair	DCK	4	70992538	71030914	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	DCLK1	13	35768652	36131306	FALSE	830	-0.745621963362667	19	32401848	39788354	0.365165917639896	1	0	0.365165917639896	1	0	7386506	1	30	21	2	FALSE	HETLOSS	PASS
659_bTo_pair	DCLK2	4	150078274	150257457	FALSE	300	-0.423460920061428	34	143186078	151174790	NA	2	NA	NA	2	NA	7988712	NA	32	20	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DCLK3	3	36712422	36764349	FALSE	209	-0.637968449787088	26	31990360	37328493	NA	2	NA	NA	2	NA	5338133	NA	26	10	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DCLRE1A	10	113834725	113854383	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	16	0	FALSE	CNLOH	PASS
659_bTo_pair	DCLRE1B	1	113905141	113914086	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	DCLRE1C	10	14897359	14954432	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	22	0	FALSE	CNLOH	PASS
659_bTo_pair	DCN	12	91140484	91183123	FALSE	794	-0.258431968401282	46	85301316	91178343	0.298322295679939	3	NA	0.298322295679939	3	NA	5877027	NA	19	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	DCP1A	3	53283428	53347610	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	DCP1B	12	1946054	2004535	FALSE	739	-0.369471841682825	39	1104785	3873202	NA	2	NA	NA	2	NA	2768417	NA	20	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DCP2	5	112976702	113020970	FALSE	331	-0.706980197323045	20	112861366	122075379	0.365165917639896	1	0	0.365165917639896	1	0	9214013	1	31	11	2	FALSE	HETLOSS	PASS
659_bTo_pair	DCPS	11	126303752	126345754	FALSE	732	-0.497254377564454	34	125672754	127000522	NA	2	NA	NA	2	NA	1327768	NA	19	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DCST1	1	155033824	155050930	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	DCST2	1	155018520	155033781	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	DCSTAMP	8	104339087	104356689	FALSE	561	-0.210477706860293	47	102652438	116770243	0.365165917639896	3	1	0.365165917639896	3	1	14117805	2	32	8	1	FALSE	GAIN	PASS
659_bTo_pair	DCT	13	94436808	94479682	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	12	1	FALSE	CNLOH	PASS
659_bTo_pair	DCTD	4	182890060	182917936	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	DCTN1	2	74361154	74392087	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	33	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DCTN2	12	57530102	57547331	FALSE	782	-0.458497547164839	34	57472671	57623111	NA	2	NA	NA	2	NA	150440	NA	11	18	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DCTN3	9	34613545	34620523	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	7	0	FALSE	CNLOH	PASS
659_bTo_pair	DCTN4	5	150708440	150759109	FALSE	350	-0.819899512516675	16	150444373	153997804	0.365165917639896	1	0	0.365165917639896	1	0	3553431	1	25	14	1	FALSE	HETLOSS	PASS
659_bTo_pair	DCTN5	16	23641392	23677455	FALSE	959	1.07278452295649	81	23603148	23650826	0.364342740527346	12	NA	0.364342740527346	12	NA	47678	NA	2	7	1	TRUE	AMP	PASS
659_bTo_pair	DCTN6	8	30156297	30183640	FALSE	524	-0.752404429217175	19	29337070	31032666	0.365165917639896	1	0	0.365165917639896	1	0	1695596	1	13	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	DCTPP1	16	30423619	30430075	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	DCUN1D1	3	182938074	182985953	FALSE	256	2.42344316230632	112	182938070	182985885	0.364342740527346	37	NA	0.364342740527346	37	NA	47815	NA	1	35	5	FALSE	AMP	PASS
659_bTo_pair	DCUN1D2	13	113455819	113490952	FALSE	846	-0.38711803760524	39	113325636	114000814	NA	2	NA	NA	2	NA	675178	NA	11	8	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DCUN1D3	16	20854925	20900384	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	DCUN1D4	4	51843000	51916837	FALSE	283	-0.7726728361031	19	49038034	54241294	0.365165917639896	1	0	0.365165917639896	1	0	5203260	1	15	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	DCUN1D5	11	103062076	103092215	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	DCX	23	111293779	111412429	FALSE	1326	0.081501992784242	59	111246621	119452040	0.308533751035793	5	NA	0.308533751035793	5	NA	8205419	NA	28	10	0	FALSE	AMP (many states)	PASS
659_bTo_pair	DCXR	17	82035136	82037732	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	DDA1	19	17309518	17323301	FALSE	1155	-0.249305971018279	46	17273895	17821522	0.298322295679939	3	NA	0.298322295679939	3	NA	547627	NA	25	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	DDAH1	1	85318481	85578363	FALSE	28	1.68597994832868	96	85258645	85350451	0.364342740527346	21	NA	0.364342740527346	21	NA	91806	NA	3	8	2	TRUE	AMP	PASS
659_bTo_pair	DDAH2	6	31727038	31730617	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	DDB1	11	61299451	61342596	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	34	1	FALSE	GAIN	PASS
659_bTo_pair	DDB2	11	47214465	47239240	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	DDC	7	50458436	50565457	FALSE	467	-0.115184963745349	53	50463290	54757565	0.273255132087987	4	NA	0.273255132087987	4	NA	4294275	NA	7	14	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	DDHD1	14	53036745	53153282	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	DDHD2	8	38225218	38275558	FALSE	532	-0.898955944857558	13	37845201	38269206	0.365165917639896	1	0	0.365165917639896	1	0	424005	1	12	45	0	TRUE	HETLOSS	PASS
659_bTo_pair	DDI1	11	104036580	104039188	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	DDI2	1	15617500	15669044	FALSE	6	-0.41295085321191	39	13779356	15847467	NA	2	NA	NA	2	NA	2068111	NA	18	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DDIAS	11	82899975	82958277	FALSE	712	-0.188800010767045	48	77590086	86068715	0.365165917639896	3	NA	0.365165917639896	3	NA	8478629	NA	30	15	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	DDIT3	12	57516588	57521737	FALSE	782	-0.458497547164839	34	57472671	57623111	NA	2	NA	NA	2	NA	150440	NA	11	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DDIT4	10	72273920	72276036	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	3	0	FALSE	CNLOH	PASS
659_bTo_pair	DDIT4L	4	100185870	100190782	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	DDN	12	48995149	48999309	FALSE	768	-0.491963868457131	34	48045387	49018767	NA	2	NA	NA	2	NA	973380	NA	28	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DDO	6	110391771	110415562	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	DDOST	1	20651767	20661544	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	DDR1	6	30876421	30900156	FALSE	379	-0.524744136561063	27	30546321	31270541	1	2	1	1	2	1	724220	1	30	20	1	FALSE	DIPLOID	PASS
659_bTo_pair	DDR2	1	162631373	162787400	FALSE	54	0.817559778666451	75	162626428	162787346	0.364342740527346	10	NA	0.364342740527346	10	NA	160918	NA	1	60	8	FALSE	AMP	PASS
659_bTo_pair	DDRGK1	20	3190350	3204685	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	DDT	22	23971365	23979828	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	1	0	FALSE	CNLOH	PASS
659_bTo_pair	DDTL	22	23966901	23972532	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	2	0	FALSE	CNLOH	PASS
659_bTo_pair	DDX1	2	15591178	15631111	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	25	2	FALSE	DIPLOID	PASS
659_bTo_pair	DDX10	11	108665025	108940930	FALSE	723	-0.542672588801529	29	108383083	111912852	NA	2	NA	NA	2	NA	3529769	NA	24	19	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DDX11	12	31073845	31104791	FALSE	759	-0.427669886187443	30	25503824	31088026	1	2	1	1	2	1	5584202	1	28	27	12	TRUE	DIPLOID	PASS
659_bTo_pair	DDX17	22	38483440	38507660	FALSE	1265	-0.53141020507802	29	38041114	39152464	NA	2	NA	NA	2	NA	1111350	NA	31	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DDX18	2	117814650	117832379	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	DDX19A	16	70346829	70373383	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DDX19B	16	70289663	70335283	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DDX20	1	111755245	111768016	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	17	3	FALSE	HETLOSS	PASS
659_bTo_pair	DDX21	10	68956128	68985073	FALSE	651	-0.523280686314431	28	68722553	70760843	0.351300687168522	2	0	0.351300687168522	2	0	2038290	2	27	17	0	FALSE	CNLOH	PASS
659_bTo_pair	DDX23	12	48829764	48852842	FALSE	768	-0.491963868457131	34	48045387	49018767	NA	2	NA	NA	2	NA	973380	NA	28	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DDX24	14	94048291	94081245	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	DDX25	11	125903348	125943702	FALSE	732	-0.497254377564454	34	125672754	127000522	NA	2	NA	NA	2	NA	1327768	NA	19	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DDX27	20	49219295	49244077	FALSE	1216	-0.465272765977354	30	47658376	50278257	1	2	1	1	2	1	2619881	1	18	22	3	FALSE	DIPLOID	PASS
659_bTo_pair	DDX28	16	68021274	68023442	FALSE	979	-0.429457644119204	34	67645299	68698317	NA	2	NA	NA	2	NA	1053018	NA	33	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DDX31	9	132592997	132670401	FALSE	625	-0.794391185935477	14	131261330	132889947	0.365165917639896	1	0	0.365165917639896	1	0	1628617	1	17	26	1	FALSE	HETLOSS	PASS
659_bTo_pair	DDX39A	19	14408819	14419383	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	DDX39B	6	31530219	31542448	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	DDX3X	23	41333284	41364472	TRUE	1289	2.47720915300906	113	41333895	41350173	0.364342740527346	38	NA	0.364342740527346	38	NA	16278	NA	1	38	4	FALSE	AMP	PASS
659_bTo_pair	DDX4	5	55738017	55817157	FALSE	319	-0.764156631411702	19	50399919	56556187	0.365165917639896	1	0	0.365165917639896	1	0	6156268	1	28	23	0	FALSE	HETLOSS	PASS
659_bTo_pair	DDX41	5	177511577	177517469	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	DDX42	17	63773603	63819317	FALSE	1064	-0.419094292936043	39	61867575	63873599	NA	2	NA	NA	2	NA	2006024	NA	24	20	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DDX43	6	73394748	73417569	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	17	2	FALSE	DIPLOID	PASS
659_bTo_pair	DDX46	5	134758771	134855133	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	25	0	FALSE	HETLOSS	PASS
659_bTo_pair	DDX47	12	12813316	12829981	FALSE	753	-0.517160615058114	27	12726042	18242949	1	2	1	1	2	1	5516907	1	31	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	DDX49	19	18919675	18928633	FALSE	1159	-0.165917001507678	49	18177228	19138502	0.365165917639896	3	1	0.365165917639896	3	1	961274	2	36	13	1	FALSE	GAIN	PASS
659_bTo_pair	DDX5	17	64499616	64508199	FALSE	1066	-0.447707994366894	34	63941413	64859452	NA	2	NA	NA	2	NA	918039	NA	12	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DDX50	10	68901278	68946847	FALSE	651	-0.523280686314431	28	68722553	70760843	0.351300687168522	2	0	0.351300687168522	2	0	2038290	2	27	16	0	FALSE	CNLOH	PASS
659_bTo_pair	DDX51	12	132136594	132144335	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	DDX52	17	37609739	37643464	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	15	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	DDX53	23	22999961	23003589	FALSE	1278	-0.021616497728569	55	20155391	23935235	0.328696605851359	4	NA	0.328696605851359	4	NA	3779844	NA	16	8	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	DDX54	12	113157174	113185479	FALSE	806	-0.481242901669781	30	113099979	114403736	1	2	1	1	2	1	1303757	1	13	21	4	FALSE	DIPLOID	PASS
659_bTo_pair	DDX55	12	123602077	123620941	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	15	3	FALSE	DIPLOID	PASS
659_bTo_pair	DDX56	7	44565417	44575051	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	15	3	FALSE	GAIN	PASS
659_bTo_pair	DDX58	9	32455705	32526324	FALSE	585	-0.464842894155678	32	22447079	32572950	0.365165917639896	2	0	0.365165917639896	2	0	10125871	2	19	20	4	FALSE	CNLOH	PASS
659_bTo_pair	DDX59	1	200623896	200669969	FALSE	60	-0.443336911293225	30	196228264	201209660	1	2	1	1	2	1	4981396	1	29	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	DDX6	11	118747766	118791149	FALSE	728	-0.487905654975058	30	118527582	119195409	1	2	1	1	2	1	667827	1	26	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	DDX60	4	168216293	168318807	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	39	5	FALSE	HETLOSS	PASS
659_bTo_pair	DDX60L	4	168356735	168537786	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	44	2	FALSE	HETLOSS	PASS
659_bTo_pair	DEAF1	11	644233	706715	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	20	4	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	DEC1	9	114850968	115402644	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	53	1	FALSE	DIPLOID	PASS
659_bTo_pair	DECR1	8	90001405	90052092	FALSE	556	1.97015605679843	102	89924463	90001980	0.364342740527346	26	NA	0.364342740527346	26	NA	77517	NA	3	13	1	TRUE	AMP	PASS
659_bTo_pair	DECR2	16	401826	412487	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	9	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	DEDD	1	161120974	161132688	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	DEDD2	19	42198598	42220140	FALSE	1177	-0.671885212726332	22	41354916	42250573	0.291335969972972	1	0	0.291335969972972	1	0	895657	1	32	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	DEF6	6	35297852	35321771	FALSE	392	-0.183129995366178	48	35241630	35475885	0.365165917639896	3	NA	0.365165917639896	3	NA	234255	NA	7	14	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	DEF8	16	89947925	89968060	FALSE	995	-0.522225769981002	29	89949539	90075863	NA	2	NA	NA	2	NA	126324	NA	5	13	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DEFA3	8	7015869	7018301	FALSE	510	-0.906181747703467	12	166288	7823395	0.365165917639896	1	0	0.365165917639896	1	0	7657107	1	48	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	DEFA4	8	6935822	6938338	FALSE	510	-0.906181747703467	12	166288	7823395	0.365165917639896	1	0	0.365165917639896	1	0	7657107	1	48	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	DEFA5	8	7055304	7056734	FALSE	510	-0.906181747703467	12	166288	7823395	0.365165917639896	1	0	0.365165917639896	1	0	7657107	1	48	2	1	FALSE	HETLOSS	PASS
659_bTo_pair	DEFA6	8	6924693	6926076	FALSE	510	-0.906181747703467	12	166288	7823395	0.365165917639896	1	0	0.365165917639896	1	0	7657107	1	48	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	DEFB1	8	6870575	6878022	FALSE	510	-0.906181747703467	12	166288	7823395	0.365165917639896	1	0	0.365165917639896	1	0	7657107	1	48	2	1	FALSE	HETLOSS	PASS
659_bTo_pair	DEFB104A	8	7836471	7841242	FALSE	511	-2.36610512212239	1	7823742	7848738	0.364342740527346	0	0	0.364342740527346	0	0	24996	0	4	2	1	FALSE	HOMDEL	PASS
659_bTo_pair	DEFB104B	8	7470308	7475082	FALSE	510	-0.906181747703467	12	166288	7823395	0.365165917639896	1	0	0.365165917639896	1	0	7657107	1	48	1	0	FALSE	HETLOSS	PASS
659_bTo_pair	DEFB105A	8	7821966	7823889	FALSE	510	-0.906181747703467	12	166288	7823395	0.365165917639896	1	0	0.365165917639896	1	0	7657107	1	48	2	0	TRUE	HETLOSS	PASS
659_bTo_pair	DEFB106A	8	7825172	7829053	FALSE	511	-2.36610512212239	1	7823742	7848738	0.364342740527346	0	0	0.364342740527346	0	0	24996	0	4	1	1	FALSE	HOMDEL	PASS
659_bTo_pair	DEFB106B	8	7482504	7486400	FALSE	510	-0.906181747703467	12	166288	7823395	0.365165917639896	1	0	0.365165917639896	1	0	7657107	1	48	1	0	FALSE	HETLOSS	PASS
659_bTo_pair	DEFB107A	8	7811720	7815716	FALSE	510	-0.906181747703467	12	166288	7823395	0.365165917639896	1	0	0.365165917639896	1	0	7657107	1	48	1	1	FALSE	HETLOSS	PASS
659_bTo_pair	DEFB108B	11	71833200	71837710	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	2	0	FALSE	GAIN	PASS
659_bTo_pair	DEFB110	6	50009138	50021981	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	DEFB112	6	50043575	50048651	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	DEFB113	6	49968677	49969625	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	DEFB114	6	49960249	49964105	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	DEFB115	20	31257664	31259632	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	DEFB116	20	31303212	31308585	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	DEFB118	20	31368618	31373923	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	DEFB119	20	31377164	31390603	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	DEFB121	20	31404845	31412838	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	DEFB123	20	31440519	31450257	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	DEFB124	20	31465506	31476757	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	DEFB125	20	87250	97094	FALSE	1195	-0.60512265366003	23	87765	1537211	0.186356639256811	1	0	0.186356639256811	1	0	1449446	1	33	3	1	FALSE	HETLOSS	PASS
659_bTo_pair	DEFB126	20	142369	145751	FALSE	1195	-0.60512265366003	23	87765	1537211	0.186356639256811	1	0	0.186356639256811	1	0	1449446	1	33	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	DEFB127	20	157470	159163	FALSE	1195	-0.60512265366003	23	87765	1537211	0.186356639256811	1	0	0.186356639256811	1	0	1449446	1	33	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	DEFB128	20	187853	189681	FALSE	1195	-0.60512265366003	23	87765	1537211	0.186356639256811	1	0	0.186356639256811	1	0	1449446	1	33	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	DEFB129	20	227258	229886	FALSE	1195	-0.60512265366003	23	87765	1537211	0.186356639256811	1	0	0.186356639256811	1	0	1449446	1	33	4	2	FALSE	HETLOSS	PASS
659_bTo_pair	DEFB131A	4	9444534	9450514	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	2	0	FALSE	GAIN	PASS
659_bTo_pair	DEFB131B	11	71878453	71884561	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	1	0	FALSE	GAIN	PASS
659_bTo_pair	DEFB132	20	257736	261096	FALSE	1195	-0.60512265366003	23	87765	1537211	0.186356639256811	1	0	0.186356639256811	1	0	1449446	1	33	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	DEFB133	6	49946021	49950265	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	DEFB134	8	11993174	11996312	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	DEFB135	8	11982321	11984590	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	DEFB136	8	11973937	11974599	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	DEFB4A	8	7894629	7896711	FALSE	512	-0.331719190506888	43	7863565	8376842	0.192136715055622	3	NA	0.192136715055622	3	NA	513277	NA	7	1	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	DEFB4B	8	7414860	7416863	FALSE	510	-0.906181747703467	12	166288	7823395	0.365165917639896	1	0	0.365165917639896	1	0	7657107	1	48	2	1	FALSE	HETLOSS	PASS
659_bTo_pair	DEGS1	1	224175756	224193441	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	DEGS2	14	100143957	100160163	FALSE	876	-0.546199181806584	27	96039535	102050530	1	2	1	1	2	1	6010995	1	30	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	DEK	6	18223868	18264823	FALSE	370	-0.377368469329801	39	15246548	20212233	NA	2	NA	NA	2	NA	4965685	NA	18	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DELE1	5	141923808	141942047	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	12	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DENND1A	9	123379654	123930152	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	31	0	FALSE	HETLOSS	PASS
659_bTo_pair	DENND1B	1	197504748	197775696	FALSE	60	-0.443336911293225	30	196228264	201209660	1	2	1	1	2	1	4981396	1	29	26	1	FALSE	DIPLOID	PASS
659_bTo_pair	DENND1C	19	6467207	6482557	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	DENND2A	7	140518420	140673993	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	25	0	FALSE	DIPLOID	PASS
659_bTo_pair	DENND2C	1	114582848	114670422	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	DENND2D	1	111187174	111204535	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	DENND3	8	141117278	141195808	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	28	1	FALSE	DIPLOID	PASS
659_bTo_pair	DENND4A	15	65658046	65792293	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	39	1	FALSE	HETLOSS	PASS
659_bTo_pair	DENND4B	1	153929501	153946696	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	33	1	FALSE	DIPLOID	PASS
659_bTo_pair	DENND4C	9	19230435	19373545	FALSE	581	-0.746183084602222	19	10618009	19786745	0.365165917639896	1	0	0.365165917639896	1	0	9168736	1	24	38	0	FALSE	HETLOSS	PASS
659_bTo_pair	DENND5A	11	9138825	9265390	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	27	1	FALSE	DIPLOID	PASS
659_bTo_pair	DENND5B	12	31382223	31591097	FALSE	760	-0.171000692864655	50	31089058	38321207	0.218007130395584	4	2	0.218007130395584	4	2	7232149	2	15	27	0	FALSE	TETRAPLOID	PASS
659_bTo_pair	DENND6A	3	57625457	57693089	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	DENND6B	22	50309030	50327060	FALSE	1272	-0.260847831900416	46	50286270	50731222	0.298322295679939	3	NA	0.298322295679939	3	NA	444952	NA	19	17	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	DENR	12	122752774	122771064	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	DEPDC1	1	68474152	68497221	FALSE	23	-0.326404897444941	43	65224778	71080923	0.192136715055622	3	NA	0.192136715055622	3	NA	5856145	NA	29	15	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	DEPDC1B	5	60596912	60700190	FALSE	323	-0.645106866010582	25	58495036	67196614	0.365165917639896	1	0	0.365165917639896	1	0	8701578	1	31	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	DEPDC4	12	100203669	100267079	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	DEPDC5	22	31753867	31908033	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	45	4	FALSE	CNLOH	PASS
659_bTo_pair	DEPDC7	11	33015864	33033582	FALSE	692	-0.391103687852083	35	32583952	33774394	1	2	1	1	2	1	1190442	1	13	11	2	FALSE	DIPLOID	PASS
659_bTo_pair	DEPP1	10	44970981	44978810	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	4	0	FALSE	CNLOH	PASS
659_bTo_pair	DEPTOR	8	119873717	120050913	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	9	0	FALSE	GAIN	PASS
659_bTo_pair	DERA	12	15911172	16037282	FALSE	753	-0.517160615058114	27	12726042	18242949	1	2	1	1	2	1	5516907	1	31	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	DERL1	8	123013164	123042423	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	8	0	FALSE	GAIN	PASS
659_bTo_pair	DERL2	17	5471251	5486811	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	DERL3	22	23834503	23839128	FALSE	1253	1.07529412333471	81	23780478	23837898	0.364342740527346	12	NA	0.364342740527346	12	NA	57420	NA	3	16	3	TRUE	AMP	PASS
659_bTo_pair	DES	2	219418377	219426739	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	11	3	FALSE	HETLOSS	PASS
659_bTo_pair	DESI1	22	41598028	41621096	FALSE	1269	-0.443951758803067	34	41205309	42514754	NA	2	NA	NA	2	NA	1309445	NA	31	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DESI2	1	244652935	244709033	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	DET1	15	88494440	88546675	FALSE	923	-0.958549275925123	11	88459674	89218937	0.289956079954009	0	0	0.289956079954009	0	0	759263	0	11	9	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	DEUP1	11	93329971	93438487	FALSE	715	-0.44311716102168	34	90214063	94410681	NA	2	NA	NA	2	NA	4196618	NA	16	14	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DEXI	16	10928891	10942460	FALSE	952	-0.553149391889556	29	10941928	11166598	NA	2	NA	NA	2	NA	224670	NA	3	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DFFA	1	10456522	10472526	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	DFFB	1	3857267	3885429	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	DGAT1	8	144314584	144326910	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	DGAT2	11	75759512	75801535	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	9	2	FALSE	GAIN	PASS
659_bTo_pair	DGAT2L6	23	70177483	70205545	FALSE	1311	0.0481524733197309	56	68048478	70452009	0.365165917639896	4	NA	0.365165917639896	4	NA	2403531	NA	19	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	DGCR2	22	19036282	19122454	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	14	0	FALSE	CNLOH	PASS
659_bTo_pair	DGCR6L	22	20314276	20320080	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	5	0	FALSE	CNLOH	PASS
659_bTo_pair	DGCR8	22	20080232	20111877	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	16	0	FALSE	CNLOH	PASS
659_bTo_pair	DGKA	12	55927319	55954027	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	25	0	FALSE	DIPLOID	PASS
659_bTo_pair	DGKB	7	14145049	14974777	FALSE	460	-0.441516370340605	34	14149117	14718640	NA	2	NA	NA	2	NA	569523	NA	1	26	3	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	DGKD	2	233354507	233472104	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	31	0	FALSE	DIPLOID	PASS
659_bTo_pair	DGKE	17	56834099	56869567	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DGKG	3	186105668	186362237	FALSE	262	1.79594791816506	98	186046360	186150151	0.364342740527346	23	NA	0.364342740527346	23	NA	103791	NA	2	27	1	TRUE	AMP	PASS
659_bTo_pair	DGKH	13	42040036	42256578	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	32	1	FALSE	HETLOSS	PASS
659_bTo_pair	DGKI	7	137381037	137847092	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	36	2	FALSE	DIPLOID	PASS
659_bTo_pair	DGKK	23	50365409	50470738	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	31	1	FALSE	AMP (many states)	PASS
659_bTo_pair	DGKQ	4	958887	986895	FALSE	272	-0.300029378244858	40	85877	1745020	0.308149309490068	3	1	0.308149309490068	3	1	1659143	2	29	25	3	FALSE	GAIN	PASS
659_bTo_pair	DGKZ	11	46332905	46380554	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	36	1	FALSE	DIPLOID	PASS
659_bTo_pair	DGLUCY	14	91060333	91225632	FALSE	870	-0.471399657488227	30	81180359	92000019	1	2	1	1	2	1	10819660	1	29	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	DGUOK	2	73926826	73958961	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	DHCR24	1	54849627	54887271	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	12	3	FALSE	DIPLOID	PASS
659_bTo_pair	DHCR7	11	71428193	71452868	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	8	1	FALSE	GAIN	PASS
659_bTo_pair	DHDDS	1	26432282	26471294	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	9	1	TRUE	DIPLOID	PASS
659_bTo_pair	DHDH	19	48933682	48944969	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	DHFR	5	80626228	80654983	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	10	0	TRUE	HETLOSS	PASS
659_bTo_pair	DHFR2	3	94047836	94063389	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	7	2	FALSE	GAIN	PASS
659_bTo_pair	DHH	12	49086656	49094819	FALSE	770	-0.500134310902258	34	49065087	50081631	NA	2	NA	NA	2	NA	1016544	NA	25	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DHODH	16	72008588	72027664	FALSE	983	-0.428709389755029	30	71178941	72171154	1	2	1	1	2	1	992213	1	22	12	3	FALSE	DIPLOID	PASS
659_bTo_pair	DHPS	19	12675717	12681902	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	DHRS1	14	24290598	24299833	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	DHRS11	17	36591798	36600806	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	DHRS12	13	51767993	51804157	FALSE	836	-0.444239733377228	32	50956423	72747004	0.365165917639896	2	0	0.365165917639896	2	0	21790581	2	40	12	0	FALSE	CNLOH	PASS
659_bTo_pair	DHRS13	17	28897781	28903071	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	DHRS2	14	23630115	23645639	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	DHRS3	1	12567910	12617731	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	DHRS4	14	23953586	23969279	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	DHRS4L2	14	23969874	24006408	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	DHRS7	14	60144120	60169856	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	7	2	FALSE	DIPLOID	PASS
659_bTo_pair	DHRS7B	17	21123364	21193265	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	7	0	FALSE	CNLOH	PASS
659_bTo_pair	DHRS7C	17	9771434	9791297	FALSE	1006	-0.894220729735546	12	8370429	10825247	0.365165917639896	1	0	0.365165917639896	1	0	2454818	1	31	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	DHRS9	2	169064789	169096167	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	DHTKD1	10	12068972	12123225	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	20	1	FALSE	CNLOH	PASS
659_bTo_pair	DHX15	4	24517441	24584550	FALSE	278	-0.217595572850614	44	20704713	38137253	0.345317016959666	3	1	0.345317016959666	3	1	17432540	2	29	18	1	FALSE	GAIN	PASS
659_bTo_pair	DHX16	6	30653119	30673037	FALSE	379	-0.524744136561063	27	30546321	31270541	1	2	1	1	2	1	724220	1	30	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	DHX29	5	55256245	55307722	FALSE	319	-0.764156631411702	19	50399919	56556187	0.365165917639896	1	0	0.365165917639896	1	0	6156268	1	28	30	0	FALSE	HETLOSS	PASS
659_bTo_pair	DHX30	3	47802909	47850195	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	26	0	FALSE	HETLOSS	PASS
659_bTo_pair	DHX32	10	125836337	125896436	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	16	0	FALSE	CNLOH	PASS
659_bTo_pair	DHX33	17	5440912	5469060	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	14	2	FALSE	HETLOSS	PASS
659_bTo_pair	DHX34	19	47349281	47382704	FALSE	1187	-0.64296711085636	26	47021158	48297657	NA	2	NA	NA	2	NA	1276499	NA	31	22	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DHX35	20	38962299	39039723	FALSE	1205	-0.619744376635615	23	37518926	41023791	0.186356639256811	1	0	0.186356639256811	1	0	3504865	1	19	22	1	FALSE	HETLOSS	PASS
659_bTo_pair	DHX36	3	154272546	154324497	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	27	0	FALSE	GAIN	PASS
659_bTo_pair	DHX37	12	124946825	124989122	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	29	0	FALSE	DIPLOID	PASS
659_bTo_pair	DHX38	16	72093562	72112912	FALSE	983	-0.428709389755029	30	71178941	72171154	1	2	1	1	2	1	992213	1	22	28	5	FALSE	DIPLOID	PASS
659_bTo_pair	DHX40	17	59565525	59608345	FALSE	1058	-0.423419268198233	34	58422367	59890994	NA	2	NA	NA	2	NA	1468627	NA	20	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DHX57	2	38797729	38875934	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	27	0	FALSE	DIPLOID	PASS
659_bTo_pair	DHX58	17	42101404	42112733	FALSE	1036	-0.764029118419186	19	41624551	42193564	0.365165917639896	1	0	0.365165917639896	1	0	569013	1	25	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	DHX8	17	43483865	43610338	FALSE	1042	-0.917571943211592	13	43146172	43526465	0.365165917639896	1	0	0.365165917639896	1	0	380293	1	6	81	1	TRUE	HETLOSS	PASS
659_bTo_pair	DHX9	1	182839369	182887751	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	29	0	FALSE	DIPLOID	PASS
659_bTo_pair	DIABLO	12	122207662	122227534	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	DIAPH1	5	141515016	141619055	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	31	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DIAPH2	23	96684663	97604997	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	34	3	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	DIAPH3	13	59665583	60163987	FALSE	836	-0.444239733377228	32	50956423	72747004	0.365165917639896	2	0	0.365165917639896	2	0	21790581	2	40	31	1	FALSE	CNLOH	PASS
659_bTo_pair	DICER1	14	95086228	95158010	TRUE	873	1.5980156864184	93	95086236	95157534	0.364342740527346	19	NA	0.364342740527346	19	NA	71298	NA	1	72	7	FALSE	AMP	PASS
659_bTo_pair	DIDO1	20	62877738	62937952	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	33	2	FALSE	DIPLOID	PASS
659_bTo_pair	DIMT1	5	62387254	62403939	FALSE	323	-0.645106866010582	25	58495036	67196614	0.365165917639896	1	0	0.365165917639896	1	0	8701578	1	31	12	2	FALSE	HETLOSS	PASS
659_bTo_pair	DIO1	1	53891239	53911086	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	DIO2	14	80197527	80387757	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	6	2	FALSE	DIPLOID	PASS
659_bTo_pair	DIO3	14	101561351	101563452	FALSE	876	-0.546199181806584	27	96039535	102050530	1	2	1	1	2	1	6010995	1	30	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	DIP2A	21	46458899	46569852	FALSE	1239	-0.568555801579827	23	44960223	46664365	0.186356639256811	1	0	0.186356639256811	1	0	1704142	1	18	40	1	FALSE	HETLOSS	PASS
659_bTo_pair	DIP2B	12	50504985	50748667	FALSE	772	-0.61197679162419	26	50109466	51920864	NA	2	NA	NA	2	NA	1811398	NA	27	43	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DIP2C	10	274190	689668	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	47	4	FALSE	CNLOH	PASS
659_bTo_pair	DIRAS1	19	2714567	2721418	FALSE	1120	-0.63588318052236	23	2233887	3062886	0.186356639256811	1	0	0.186356639256811	1	0	828999	1	28	3	1	FALSE	HETLOSS	PASS
659_bTo_pair	DIRAS2	9	90609832	90643105	FALSE	604	-0.547885090101936	27	85547201	90613824	1	2	1	1	2	1	5066623	1	21	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	DIRAS3	1	68045896	68051631	FALSE	23	-0.326404897444941	43	65224778	71080923	0.192136715055622	3	NA	0.192136715055622	3	NA	5856145	NA	29	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	DIRC1	2	188733738	188790104	FALSE	159	-0.50094907723407	34	185815441	189771912	NA	2	NA	NA	2	NA	3956471	NA	17	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DIRC2	3	122794795	122881139	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	11	0	FALSE	GAIN	PASS
659_bTo_pair	DIS3	13	72752169	72782096	TRUE	837	1.888694808087	101	72752340	72782099	0.364342740527346	24	NA	0.364342740527346	24	NA	29759	NA	3	47	2	FALSE	AMP	PASS
659_bTo_pair	DIS3L	15	66293217	66333898	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	21	1	FALSE	HETLOSS	PASS
659_bTo_pair	DIS3L2	2	231961245	232344350	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	21	1	FALSE	DIPLOID	PASS
659_bTo_pair	DISC1	1	231626815	232041272	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	20	1	FALSE	HETLOSS	PASS
659_bTo_pair	DISP1	1	222872271	223005995	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	23	1	FALSE	DIPLOID	PASS
659_bTo_pair	DISP2	15	40358235	40378639	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	21	1	FALSE	HETLOSS	PASS
659_bTo_pair	DISP3	1	11479166	11537584	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	28	7	FALSE	DIPLOID	PASS
659_bTo_pair	DIXDC1	11	111927144	112022584	FALSE	724	-0.507750808576719	29	111913677	112086663	NA	2	NA	NA	2	NA	172986	NA	9	22	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DKC1	23	154762742	154777689	FALSE	1341	-0.0231097163941018	55	154552015	155545250	0.328696605851359	4	NA	0.328696605851359	4	NA	993235	NA	23	15	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	DKK1	10	52314296	52318042	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	5	0	FALSE	CNLOH	PASS
659_bTo_pair	DKK2	4	106921802	107283806	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	DKK3	11	11963106	12009769	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	DKK4	8	42374068	42377232	FALSE	541	-0.815492706726597	16	42338595	47735321	0.365165917639896	1	0	0.365165917639896	1	0	5396726	1	15	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	DKKL1	19	49361783	49375116	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	DLAT	11	112024814	112064390	FALSE	724	-0.507750808576719	29	111913677	112086663	NA	2	NA	NA	2	NA	172986	NA	9	16	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DLC1	8	13083361	13604610	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	34	8	FALSE	HETLOSS	PASS
659_bTo_pair	DLD	7	107890970	107931730	FALSE	488	-0.464127371400283	34	107070260	116559206	NA	2	NA	NA	2	NA	9488946	NA	33	20	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DLEC1	3	38039205	38124025	FALSE	210	-0.747326004597467	19	37329112	38136668	0.365165917639896	1	0	0.365165917639896	1	0	807556	1	7	42	3	FALSE	HETLOSS	PASS
659_bTo_pair	DLEU7	13	50711008	50843939	FALSE	835	-0.766581964775609	19	48490223	50953919	0.365165917639896	1	0	0.365165917639896	1	0	2463696	1	18	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	DLG1	3	197042560	197299300	FALSE	271	-0.194588974812627	47	196198492	198169864	0.365165917639896	3	1	0.365165917639896	3	1	1971372	2	29	28	2	FALSE	GAIN	PASS
659_bTo_pair	DLG2	11	83455012	85627922	FALSE	712	-0.188800010767045	48	77590086	86068715	0.365165917639896	3	NA	0.365165917639896	3	NA	8478629	NA	30	33	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	DLG3	23	70444861	70505490	FALSE	1311	0.0481524733197309	56	68048478	70452009	0.365165917639896	4	NA	0.365165917639896	4	NA	2403531	NA	19	24	2	TRUE	GAIN (many states)	PASS
659_bTo_pair	DLG4	17	7187169	7219841	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	23	0	FALSE	HETLOSS	PASS
659_bTo_pair	DLG5	10	77790791	77926526	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	39	5	FALSE	CNLOH	PASS
659_bTo_pair	DLGAP1	18	3496032	4455335	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	20	1	FALSE	GAIN	PASS
659_bTo_pair	DLGAP2	8	737596	1708474	FALSE	510	-0.906181747703467	12	166288	7823395	0.365165917639896	1	0	0.365165917639896	1	0	7657107	1	48	22	4	FALSE	HETLOSS	PASS
659_bTo_pair	DLGAP3	1	34865436	34929585	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	DLGAP4	20	36306336	36528637	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	DLGAP5	14	55148112	55191678	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	20	3	FALSE	DIPLOID	PASS
659_bTo_pair	DLK1	14	100725705	100738224	FALSE	876	-0.546199181806584	27	96039535	102050530	1	2	1	1	2	1	6010995	1	30	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	DLK2	6	43450352	43456632	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	DLL1	6	170282206	170306565	FALSE	449	-0.520973998932362	27	167374374	170584540	1	2	1	1	2	1	3210166	1	18	17	1	FALSE	DIPLOID	PASS
659_bTo_pair	DLL3	19	39498895	39508481	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	14	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	DLL4	15	40929333	40939073	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	DLST	14	74881891	74903745	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	15	4	FALSE	DIPLOID	PASS
659_bTo_pair	DLX1	2	172084740	172089677	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	DLX2	2	172099439	172102900	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	DLX3	17	49990005	49995224	FALSE	1053	-0.561829441831031	26	49646906	50626743	NA	2	NA	NA	2	NA	979837	NA	25	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DLX4	17	49968970	49974959	FALSE	1053	-0.561829441831031	26	49646906	50626743	NA	2	NA	NA	2	NA	979837	NA	25	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DLX5	7	97020392	97024950	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	DLX6	7	97005548	97011039	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	DMAC1	9	7796490	7888380	FALSE	579	-0.757785700087963	19	5656721	7798588	0.365165917639896	1	0	0.365165917639896	1	0	2141867	1	11	3	0	TRUE	HETLOSS	PASS
659_bTo_pair	DMAC2	19	41431318	41440717	FALSE	1177	-0.671885212726332	22	41354916	42250573	0.291335969972972	1	0	0.291335969972972	1	0	895657	1	32	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	DMAP1	1	44213455	44220681	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	DMBT1	10	122560665	122643736	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	52	10	FALSE	CNLOH	PASS
659_bTo_pair	DMBX1	1	46506996	46514226	FALSE	16	-0.485631979032023	30	46175602	48453048	1	2	1	1	2	1	2277446	1	32	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	DMC1	22	38518949	38570286	FALSE	1265	-0.53141020507802	29	38041114	39152464	NA	2	NA	NA	2	NA	1111350	NA	31	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DMD	23	31097677	33339441	FALSE	1282	-0.198839212217093	48	28789325	33339312	0.365165917639896	3	NA	0.365165917639896	3	NA	4549987	NA	11	93	5	FALSE	GAIN (many states)	PASS
659_bTo_pair	DMGDH	5	78997606	79236038	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	33	6	FALSE	HETLOSS	PASS
659_bTo_pair	DMKN	19	35497220	35513658	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	23	2	FALSE	HETLOSS	PASS
659_bTo_pair	DMP1	4	87650307	87664361	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	DMPK	19	45769717	45782552	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	18	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	DMRT1	9	841690	969090	FALSE	570	-0.801602085682206	16	14889	1057241	0.365165917639896	1	0	0.365165917639896	1	0	1042352	1	9	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	DMRT2	9	1049858	1057552	FALSE	570	-0.801602085682206	16	14889	1057241	0.365165917639896	1	0	0.365165917639896	1	0	1042352	1	9	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	DMRT3	9	976964	991731	FALSE	570	-0.801602085682206	16	14889	1057241	0.365165917639896	1	0	0.365165917639896	1	0	1042352	1	9	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	DMRTA1	9	22446841	22455740	FALSE	585	-0.464842894155678	32	22447079	32572950	0.365165917639896	2	0	0.365165917639896	2	0	10125871	2	19	7	2	FALSE	CNLOH	PASS
659_bTo_pair	DMRTA2	1	50417550	50423500	FALSE	17	-0.451021898823112	34	48472019	50857895	NA	2	NA	NA	2	NA	2385876	NA	6	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DMRTB1	1	53459399	53467488	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	DMRTC1	23	72872025	72943814	FALSE	1317	0.217996879888221	62	71533297	76176924	0.364342740527346	5	NA	0.364342740527346	5	NA	4643627	NA	35	2	0	FALSE	AMP (many states)	PASS
659_bTo_pair	DMRTC2	19	41844743	41852333	FALSE	1177	-0.671885212726332	22	41354916	42250573	0.291335969972972	1	0	0.291335969972972	1	0	895657	1	32	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	DMTF1	7	87152361	87196337	FALSE	477	-0.558719554035895	26	86880427	87472624	NA	2	NA	NA	2	NA	592197	NA	5	17	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DMTN	8	22048995	22082527	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	15	2	FALSE	HETLOSS	PASS
659_bTo_pair	DMWD	19	45782947	45792802	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	11	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	DMXL1	5	119037772	119249138	FALSE	331	-0.706980197323045	20	112861366	122075379	0.365165917639896	1	0	0.365165917639896	1	0	9214013	1	31	66	5	FALSE	HETLOSS	PASS
659_bTo_pair	DMXL2	15	51447711	51622833	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	58	6	FALSE	HETLOSS	PASS
659_bTo_pair	DNA2	10	68414064	68472121	FALSE	649	-0.498971247588349	34	63133428	68527348	NA	2	NA	NA	2	NA	5393920	NA	15	21	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DNAAF1	16	84145287	84178767	FALSE	987	-0.578642888038652	23	81999201	85806436	0.186356639256811	1	0	0.186356639256811	1	0	3807235	1	31	14	1	FALSE	HETLOSS	PASS
659_bTo_pair	DNAAF2	14	49625174	49635230	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	DNAAF3	19	55158661	55166722	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	14	4	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	DNAAF4	15	55410525	55508234	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	DNAAF5	7	726701	786475	FALSE	450	-0.329551508654045	40	193185	2379492	0.308149309490068	3	1	0.308149309490068	3	1	2186307	2	26	15	2	FALSE	GAIN	PASS
659_bTo_pair	DNAH1	3	52316319	52400491	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	89	1	TRUE	HETLOSS	PASS
659_bTo_pair	DNAH10	12	123762188	123936206	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	86	8	FALSE	DIPLOID	PASS
659_bTo_pair	DNAH11	7	21543215	21901839	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	99	12	FALSE	GAIN	PASS
659_bTo_pair	DNAH12	3	57293699	57544344	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	63	10	FALSE	HETLOSS	PASS
659_bTo_pair	DNAH14	1	224896262	225399292	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	97	18	FALSE	DIPLOID	PASS
659_bTo_pair	DNAH17	17	78423697	78577394	FALSE	1080	-0.537824093701074	27	76741010	78870935	1	2	1	1	2	1	2129925	1	20	91	8	FALSE	DIPLOID	PASS
659_bTo_pair	DNAH2	17	7717354	7833744	FALSE	1002	-0.806633716627379	14	7689340	8047671	0.365165917639896	1	0	0.365165917639896	1	0	358331	1	15	93	7	FALSE	HETLOSS	PASS
659_bTo_pair	DNAH3	16	20933111	21159441	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	77	4	FALSE	DIPLOID	PASS
659_bTo_pair	DNAH5	5	13690331	13944543	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	90	11	FALSE	GAIN	PASS
659_bTo_pair	DNAH6	2	84516455	84819589	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	83	0	FALSE	DIPLOID	PASS
659_bTo_pair	DNAH7	2	195737703	196068812	FALSE	161	-0.46057869782823	30	190057617	197310624	1	2	1	1	2	1	7253007	1	23	79	9	FALSE	DIPLOID	PASS
659_bTo_pair	DNAH8	6	38715341	39030529	FALSE	397	-0.509151429367598	27	37213022	41687167	1	2	1	1	2	1	4474145	1	33	104	7	FALSE	DIPLOID	PASS
659_bTo_pair	DNAH9	17	11598431	11969748	FALSE	1007	-0.622785267243661	26	10825621	11992799	NA	2	NA	NA	2	NA	1167178	NA	4	88	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DNAI1	9	34457414	34520989	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	22	0	FALSE	CNLOH	PASS
659_bTo_pair	DNAI2	17	74274247	74314884	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	DNAJA1	9	33025211	33039907	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	8	1	FALSE	CNLOH	PASS
659_bTo_pair	DNAJA2	16	46955362	46973788	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	DNAJA3	16	4425805	4456775	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	DNAJA4	15	78264086	78282196	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	DNAJB1	19	14514770	14529770	FALSE	1148	2.41960820929952	112	14514798	14560134	0.364342740527346	37	NA	0.364342740527346	37	NA	45336	NA	2	20	0	FALSE	AMP	PASS
659_bTo_pair	DNAJB11	3	186567403	186585800	FALSE	263	-0.396590537714608	39	186161612	186743777	NA	2	NA	NA	2	NA	582165	NA	9	11	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DNAJB12	10	72332830	72355230	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	9	0	FALSE	CNLOH	PASS
659_bTo_pair	DNAJB13	11	73950319	73970366	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	8	0	FALSE	GAIN	PASS
659_bTo_pair	DNAJB14	4	99896248	99946726	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	DNAJB2	2	219279267	219286900	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	DNAJB4	1	77979175	78017964	FALSE	27	-0.365760579101575	39	77969065	85252731	NA	2	NA	NA	2	NA	7283666	NA	23	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DNAJB5	9	34989641	34998900	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	8	0	FALSE	CNLOH	PASS
659_bTo_pair	DNAJB6	7	157335381	157417439	FALSE	509	-0.56054035608462	23	152759958	159144708	0.186356639256811	1	0	0.186356639256811	1	0	6384750	1	20	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	DNAJB7	22	40859549	40862126	FALSE	1267	-0.448885551917151	34	39313004	41087696	NA	2	NA	NA	2	NA	1774692	NA	24	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DNAJB8	3	128462439	128467248	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	3	0	TRUE	GAIN	PASS
659_bTo_pair	DNAJB9	7	108569568	108574850	FALSE	488	-0.464127371400283	34	107070260	116559206	NA	2	NA	NA	2	NA	9488946	NA	33	4	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DNAJC1	10	21756537	22003769	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	14	0	FALSE	CNLOH	PASS
659_bTo_pair	DNAJC10	2	182716041	182794464	FALSE	157	-0.495064743595466	30	181539293	185786350	1	2	1	1	2	1	4247057	1	12	22	4	FALSE	DIPLOID	PASS
659_bTo_pair	DNAJC11	1	6634168	6701924	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	DNAJC12	10	67796665	67838166	FALSE	649	-0.498971247588349	34	63133428	68527348	NA	2	NA	NA	2	NA	5393920	NA	15	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DNAJC13	3	132417526	132539032	FALSE	242	-0.32037413513609	40	130560427	134790274	0.308149309490068	3	1	0.308149309490068	3	1	4229847	2	29	56	3	FALSE	GAIN	PASS
659_bTo_pair	DNAJC14	12	55820960	55830824	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	DNAJC15	13	43023203	43114224	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	DNAJC16	1	15526813	15592379	FALSE	6	-0.41295085321191	39	13779356	15847467	NA	2	NA	NA	2	NA	2068111	NA	18	24	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DNAJC17	15	40765155	40807478	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	DNAJC18	5	139408588	139444491	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	8	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	DNAJC19	3	180983709	180989774	FALSE	253	-0.302573270656947	43	179243074	180989661	0.192136715055622	3	NA	0.192136715055622	3	NA	1746587	NA	13	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	DNAJC2	7	103312474	103344873	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	DNAJC21	5	34929559	34958964	FALSE	312	-0.206081392785099	47	24487677	35857105	0.365165917639896	3	1	0.365165917639896	3	1	11369428	2	27	14	0	FALSE	GAIN	PASS
659_bTo_pair	DNAJC22	12	49346917	49357546	FALSE	770	-0.500134310902258	34	49065087	50081631	NA	2	NA	NA	2	NA	1016544	NA	25	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DNAJC24	11	31369840	31431849	FALSE	690	-0.499672577426227	34	26697185	32104345	NA	2	NA	NA	2	NA	5407160	NA	20	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DNAJC25	9	111631352	111654351	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	DNAJC25-GNG10	9	111631386	111670229	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	DNAJC27	2	24943636	24972094	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DNAJC28	21	33485530	33491720	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	DNAJC3	13	95677139	95794989	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	12	0	FALSE	CNLOH	PASS
659_bTo_pair	DNAJC30	7	73680969	73683453	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	DNAJC4	11	64230278	64234286	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	DNAJC5	20	63895182	63936031	FALSE	1225	-0.32421417626258	43	63733191	64273510	0.192136715055622	3	NA	0.192136715055622	3	NA	540319	NA	22	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	DNAJC5B	8	66021560	66100526	FALSE	550	-0.186881774239562	48	60208949	67746087	0.365165917639896	3	NA	0.365165917639896	3	NA	7537138	NA	33	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	DNAJC5G	2	27275421	27281499	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	DNAJC6	1	65248219	65415869	FALSE	23	-0.326404897444941	43	65224778	71080923	0.192136715055622	3	NA	0.192136715055622	3	NA	5856145	NA	29	22	5	FALSE	GAIN (many states)	PASS
659_bTo_pair	DNAJC7	17	41976433	42021376	FALSE	1036	-0.764029118419186	19	41624551	42193564	0.365165917639896	1	0	0.365165917639896	1	0	569013	1	25	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	DNAJC8	1	28199456	28233025	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	DNAJC9	10	73183362	73248862	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	16	0	FALSE	CNLOH	PASS
659_bTo_pair	DNAL1	14	73644875	73703732	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	DNAL4	22	38778508	38794198	FALSE	1265	-0.53141020507802	29	38041114	39152464	NA	2	NA	NA	2	NA	1111350	NA	31	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DNALI1	1	37556919	37566857	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	DNASE1	16	3611728	3680143	FALSE	946	-0.822341693918626	16	3616614	3717461	0.365165917639896	1	0	0.365165917639896	1	0	100847	1	2	23	0	FALSE	HETLOSS	PASS
659_bTo_pair	DNASE1L1	23	154401238	154412112	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	8	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	DNASE1L2	16	2235816	2238711	FALSE	942	-0.803500535593988	16	2178660	2530995	0.365165917639896	1	0	0.365165917639896	1	0	352335	1	18	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	DNASE1L3	3	58192257	58214697	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	8	3	FALSE	HETLOSS	PASS
659_bTo_pair	DNASE2	19	12875211	12881468	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	DNASE2B	1	84398532	84415018	FALSE	27	-0.365760579101575	39	77969065	85252731	NA	2	NA	NA	2	NA	7283666	NA	23	7	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DND1	5	140670794	140673586	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	DNER	2	229357629	229714558	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	DNHD1	11	6497260	6593758	FALSE	682	-0.308581000695747	43	6240079	6614875	0.192136715055622	3	NA	0.192136715055622	3	NA	374796	NA	15	71	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	DNLZ	9	136359480	136363789	FALSE	629	-0.955558414525678	9	134750808	136485014	0.291955377254426	0	0	0.291955377254426	0	0	1734206	0	30	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	DNM1	9	128191655	128255248	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	28	2	FALSE	HETLOSS	PASS
659_bTo_pair	DNM1L	12	32679200	32745650	FALSE	760	-0.171000692864655	50	31089058	38321207	0.218007130395584	4	2	0.218007130395584	4	2	7232149	2	15	21	0	FALSE	TETRAPLOID	PASS
659_bTo_pair	DNM2	19	10718079	10833488	FALSE	1141	-0.578703281933348	26	10514217	10929669	NA	2	NA	NA	2	NA	415452	NA	14	27	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DNM3	1	171841498	172418466	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	24	1	FALSE	DIPLOID	PASS
659_bTo_pair	DNMBP	10	99875577	100009919	FALSE	666	-0.516928660882684	29	98163350	100063639	NA	2	NA	NA	2	NA	1900289	NA	16	32	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DNMT1	19	10133345	10231286	FALSE	1137	0.943708598103783	78	10133588	10181993	0.364342740527346	11	NA	0.364342740527346	11	NA	48405	NA	1	60	4	TRUE	AMP	PASS
659_bTo_pair	DNMT3A	2	25227855	25342590	TRUE	96	1.27599926695718	86	25222897	25314165	0.364342740527346	15	NA	0.364342740527346	15	NA	91268	NA	1	62	7	TRUE	AMP	PASS
659_bTo_pair	DNMT3B	20	32762385	32809356	TRUE	1202	0.844808231617173	76	32358370	32836730	0.364342740527346	10	NA	0.364342740527346	10	NA	478360	NA	7	34	0	FALSE	AMP	PASS
659_bTo_pair	DNMT3L	21	44246339	44262216	FALSE	1236	-0.500794339727727	30	44229616	44592452	1	2	1	1	2	1	362836	1	14	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	DNPEP	2	219373527	219400022	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	DNPH1	6	43225629	43229484	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	DNTT	10	96304396	96338564	FALSE	663	-0.556688707084635	24	94775074	96952170	0.359751661895656	2	0	0.359751661895656	2	0	2177096	2	21	13	0	FALSE	CNLOH	PASS
659_bTo_pair	DNTTIP1	20	45791937	45811427	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	DNTTIP2	1	93866283	93879918	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	DOC2A	16	30005509	30023270	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	DOC2B	17	142789	181636	FALSE	996	-0.883704003468192	13	148164	1298296	0.365165917639896	1	0	0.365165917639896	1	0	1150132	1	14	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	DOCK1	10	126905409	127452517	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	59	3	FALSE	CNLOH	PASS
659_bTo_pair	DOCK10	2	224765090	225042445	FALSE	184	-0.5591638083862	26	224765734	226731262	NA	2	NA	NA	2	NA	1965528	NA	2	56	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DOCK11	23	118495898	118686163	FALSE	1326	0.081501992784242	59	111246621	119452040	0.308533751035793	5	NA	0.308533751035793	5	NA	8205419	NA	28	55	1	FALSE	AMP (many states)	PASS
659_bTo_pair	DOCK2	5	169637247	170083382	FALSE	356	-0.773912908266316	17	162095550	171298806	0.365165917639896	1	0	0.365165917639896	1	0	9203256	1	21	59	2	FALSE	HETLOSS	PASS
659_bTo_pair	DOCK3	3	50675241	51384198	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	54	0	FALSE	HETLOSS	PASS
659_bTo_pair	DOCK4	7	111726110	112206411	FALSE	488	-0.464127371400283	34	107070260	116559206	NA	2	NA	NA	2	NA	9488946	NA	33	55	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DOCK5	8	25184723	25418082	FALSE	520	-0.862302460890099	13	23703081	26040940	0.365165917639896	1	0	0.365165917639896	1	0	2337859	1	12	52	2	FALSE	HETLOSS	PASS
659_bTo_pair	DOCK6	19	11199295	11262481	FALSE	1143	-0.599591757528625	23	11089545	11375998	0.186356639256811	1	0	0.186356639256811	1	0	286453	1	11	56	13	FALSE	HETLOSS	PASS
659_bTo_pair	DOCK7	1	62454298	62688368	FALSE	21	-0.414935064922519	39	59321678	64830856	NA	2	NA	NA	2	NA	5509178	NA	22	60	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DOCK8	9	214854	465259	FALSE	570	-0.801602085682206	16	14889	1057241	0.365165917639896	1	0	0.365165917639896	1	0	1042352	1	9	50	5	FALSE	HETLOSS	PASS
659_bTo_pair	DOCK9	13	98793429	99086625	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	58	1	FALSE	CNLOH	PASS
659_bTo_pair	DOHH	19	3490822	3500940	FALSE	1122	-0.653400653967241	21	3157829	4037863	0.140309795179477	0	0	0.140309795179477	0	0	880034	0	27	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	DOK1	2	74549026	74557554	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DOK2	8	21908873	21913860	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	DOK3	5	177501907	177511274	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	DOK4	16	57471922	57487327	FALSE	971	-0.537344591536493	29	57069860	57923335	NA	2	NA	NA	2	NA	853475	NA	21	8	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DOK5	20	54475597	54651171	FALSE	1220	-1.01213938040689	8	53953522	56248828	0.342391532111247	0	0	0.342391532111247	0	0	2295306	0	6	9	1	FALSE	HOMDEL	PASS
659_bTo_pair	DOK6	18	69401055	69849087	FALSE	1111	-0.872352968035647	12	63331800	74584528	0.365165917639896	1	0	0.365165917639896	1	0	11252728	1	31	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	DOK7	4	3463311	3501473	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	13	4	FALSE	GAIN	PASS
659_bTo_pair	DOLK	9	128945530	128947619	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	DOLPP1	9	129081100	129090438	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	DONSON	21	33559542	33588708	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	DOP1A	6	83067666	83171350	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	53	2	FALSE	DIPLOID	PASS
659_bTo_pair	DOP1B	21	36156782	36294274	FALSE	1228	-0.430637379115077	30	36009679	38367602	1	2	1	1	2	1	2357923	1	17	46	4	FALSE	DIPLOID	PASS
659_bTo_pair	DOT1L	19	2164149	2232578	FALSE	1119	1.38333823500502	87	2164203	2232469	0.364342740527346	16	NA	0.364342740527346	16	NA	68266	NA	3	51	4	FALSE	AMP	PASS
659_bTo_pair	DPAGT1	11	119096503	119108331	FALSE	728	-0.487905654975058	30	118527582	119195409	1	2	1	1	2	1	667827	1	26	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	DPCD	10	101570560	101609668	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	19	1	FALSE	CNLOH	PASS
659_bTo_pair	DPEP1	16	89613308	89638456	FALSE	991	-0.654420383530572	22	89508463	89733977	0.291335969972972	1	0	0.291335969972972	1	0	225514	1	10	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	DPEP2	16	67987394	68000586	FALSE	979	-0.429457644119204	34	67645299	68698317	NA	2	NA	NA	2	NA	1053018	NA	33	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DPEP2NB	16	68013436	68015911	FALSE	979	-0.429457644119204	34	67645299	68698317	NA	2	NA	NA	2	NA	1053018	NA	33	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DPEP3	16	67975663	67980829	FALSE	979	-0.429457644119204	34	67645299	68698317	NA	2	NA	NA	2	NA	1053018	NA	33	11	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DPF1	19	38211006	38229714	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	DPF2	11	65333754	65353249	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	12	0	FALSE	GAIN	PASS
659_bTo_pair	DPF3	14	72619296	72894116	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	DPH1	17	2030110	2043430	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	DPH2	1	43970000	43973369	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	DPH3	3	16257978	16264972	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	3	1	FALSE	HETLOSS	PASS
659_bTo_pair	DPH5	1	100989623	101026088	FALSE	32	-0.441874489475641	34	100273343	107324874	NA	2	NA	NA	2	NA	7051531	NA	18	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DPH6	15	35217345	35546193	FALSE	890	-0.864832779596883	13	34359248	37966686	0.365165917639896	1	0	0.365165917639896	1	0	3607438	1	12	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	DPH7	9	137554904	137578935	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	DPM1	20	50934867	50958555	FALSE	1218	-0.459978768286429	34	50587211	53185754	NA	2	NA	NA	2	NA	2598543	NA	12	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DPM2	9	127935099	127938484	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	DPM3	1	155139891	155140595	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	DPP10	2	114442299	115845752	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	32	1	FALSE	DIPLOID	PASS
659_bTo_pair	DPP3	11	66480013	66509657	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	18	2	FALSE	GAIN	PASS
659_bTo_pair	DPP4	2	161992241	162074542	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	26	0	FALSE	DIPLOID	PASS
659_bTo_pair	DPP6	7	153887097	154894285	FALSE	509	-0.56054035608462	23	152759958	159144708	0.186356639256811	1	0	0.186356639256811	1	0	6384750	1	20	31	6	FALSE	HETLOSS	PASS
659_bTo_pair	DPP7	9	137110542	137115177	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	DPP8	15	65442463	65517704	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	20	1	FALSE	HETLOSS	PASS
659_bTo_pair	DPP9	19	4675224	4724673	FALSE	1124	-0.62008955817668	23	4168484	5151543	0.186356639256811	1	0	0.186356639256811	1	0	983059	1	28	23	0	FALSE	HETLOSS	PASS
659_bTo_pair	DPPA2	3	109293788	109316517	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	8	1	FALSE	GAIN	PASS
659_bTo_pair	DPPA3	12	7711454	7717559	FALSE	745	-0.243574834353832	44	6965649	8175835	0.345317016959666	3	1	0.345317016959666	3	1	1210186	2	26	5	0	FALSE	GAIN	PASS
659_bTo_pair	DPPA4	3	109326141	109337572	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	8	2	FALSE	GAIN	PASS
659_bTo_pair	DPPA5	6	73353062	73354295	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	DPRX	19	53632056	53637009	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	DPT	1	168695459	168729264	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	DPY19L1	7	34928876	35038271	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	22	2	FALSE	GAIN	PASS
659_bTo_pair	DPY19L2	12	63558913	63668939	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	23	2	FALSE	DIPLOID	PASS
659_bTo_pair	DPY19L3	19	32405543	32485895	FALSE	1165	-0.570153591761829	23	29923697	33225768	0.186356639256811	1	0	0.186356639256811	1	0	3302071	1	18	18	1	FALSE	HETLOSS	PASS
659_bTo_pair	DPY19L4	8	94719703	94793836	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	19	0	FALSE	GAIN	PASS
659_bTo_pair	DPY30	2	31867809	32039812	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	DPYD	1	97077743	97995000	FALSE	31	-0.34979279123772	43	94820443	100270584	0.192136715055622	3	NA	0.192136715055622	3	NA	5450141	NA	22	33	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	DPYS	8	104330324	104467053	FALSE	561	-0.210477706860293	47	102652438	116770243	0.365165917639896	3	1	0.365165917639896	3	1	14117805	2	32	18	2	FALSE	GAIN	PASS
659_bTo_pair	DPYSL2	8	26514022	26658178	FALSE	522	-0.616914645700195	26	26383178	27467373	NA	2	NA	NA	2	NA	1084195	NA	8	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DPYSL3	5	147390811	147510056	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	16	1	FALSE	HETLOSS	PASS
659_bTo_pair	DPYSL4	10	132186900	132205776	FALSE	676	-0.612597388333807	25	132187132	133626712	0.365165917639896	1	0	0.365165917639896	1	0	1439580	1	27	15	2	FALSE	HETLOSS	PASS
659_bTo_pair	DPYSL5	2	26847747	26950351	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	DQX1	2	74518131	74526336	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DR1	1	93345888	93369498	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	DRAM1	12	101877351	102012130	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	DRAM2	1	111117333	111140216	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	DRAP1	11	65919257	65921561	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	7	0	FALSE	GAIN	PASS
659_bTo_pair	DRAXIN	1	11691729	11725857	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	DRC1	2	26401916	26456711	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	DRC3	17	17972813	18016889	FALSE	1014	-0.559544539688918	26	17247059	18028347	NA	2	NA	NA	2	NA	781288	NA	10	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DRC7	16	57694793	57731805	FALSE	971	-0.537344591536493	29	57069860	57923335	NA	2	NA	NA	2	NA	853475	NA	21	17	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DRD1	5	175440039	175444208	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	DRD2	11	113409615	113475691	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	DRD3	3	114128652	114199407	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	8	0	FALSE	GAIN	PASS
659_bTo_pair	DRD4	11	637293	640706	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	DRD5	4	9781680	9784009	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	6	2	FALSE	GAIN	PASS
659_bTo_pair	DRG1	22	31399523	31530634	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	31	2	FALSE	CNLOH	PASS
659_bTo_pair	DRG2	17	18087886	18107971	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	13	0	FALSE	CNLOH	PASS
659_bTo_pair	DRGX	10	49364181	49396016	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	7	0	FALSE	CNLOH	PASS
659_bTo_pair	DRICH1	22	23608452	23632321	FALSE	1252	-0.948790128902656	11	23317677	23779437	0.289956079954009	0	0	0.289956079954009	0	0	461760	0	9	13	2	FALSE	HOMDEL	PASS
659_bTo_pair	DROSHA	5	31400497	31532196	FALSE	312	-0.206081392785099	47	24487677	35857105	0.365165917639896	3	1	0.365165917639896	3	1	11369428	2	27	36	2	FALSE	GAIN	PASS
659_bTo_pair	DRP2	23	101219769	101264497	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	25	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	DSC1	18	31129236	31162856	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	19	0	FALSE	GAIN	PASS
659_bTo_pair	DSC2	18	31058840	31102522	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	17	1	FALSE	GAIN	PASS
659_bTo_pair	DSC3	18	30990008	31042815	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	21	1	FALSE	GAIN	PASS
659_bTo_pair	DSCAM	21	40010999	40847139	FALSE	1230	-0.572411047461507	26	38805300	41452836	NA	2	NA	NA	2	NA	2647536	NA	17	44	4	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DSCAML1	11	117427773	117817525	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	45	1	FALSE	HETLOSS	PASS
659_bTo_pair	DSCC1	8	119833976	119856010	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	9	0	FALSE	GAIN	PASS
659_bTo_pair	DSE	6	116254173	116444860	FALSE	417	-0.520434008170675	29	114058103	117272433	NA	2	NA	NA	2	NA	3214330	NA	20	20	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DSEL	18	67506582	67516980	FALSE	1111	-0.872352968035647	12	63331800	74584528	0.365165917639896	1	0	0.365165917639896	1	0	11252728	1	31	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	DSG1	18	31318089	31357029	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	21	3	FALSE	GAIN	PASS
659_bTo_pair	DSG2	18	31498043	31549008	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	21	3	FALSE	GAIN	PASS
659_bTo_pair	DSG3	18	31447795	31478702	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	21	1	FALSE	GAIN	PASS
659_bTo_pair	DSG4	18	31376777	31414912	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	22	1	FALSE	GAIN	PASS
659_bTo_pair	DSN1	20	36751791	36773818	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	DSP	6	7541575	7586717	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	44	2	FALSE	DIPLOID	PASS
659_bTo_pair	DSPP	4	87608553	87616910	FALSE	291	-0.458701040497953	34	83536708	87613131	NA	2	NA	NA	2	NA	4076423	NA	17	13	2	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	DST	6	56457987	56954628	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	136	5	FALSE	DIPLOID	PASS
659_bTo_pair	DSTN	20	17569863	17609919	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	DSTYK	1	205142505	205211566	FALSE	66	-0.597189828646048	26	204618263	205619845	NA	2	NA	NA	2	NA	1001582	NA	13	17	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DTD1	20	18587893	18766644	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	DTD2	14	31446036	31457510	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	DTHD1	4	36281622	36345756	FALSE	278	-0.217595572850614	44	20704713	38137253	0.345317016959666	3	1	0.345317016959666	3	1	17432540	2	29	15	4	FALSE	GAIN	PASS
659_bTo_pair	DTL	1	212035553	212107400	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	DTNA	18	34493290	34891844	FALSE	1095	-0.699288883997088	20	33734323	36718652	0.365165917639896	1	0	0.365165917639896	1	0	2984329	1	17	26	0	FALSE	HETLOSS	PASS
659_bTo_pair	DTNB	2	25377198	25673647	FALSE	97	-0.88486954177307	13	25329802	25652584	0.365165917639896	1	0	0.365165917639896	1	0	322782	1	2	26	0	FALSE	HETLOSS	PASS
659_bTo_pair	DTNBP1	6	15522801	15663058	FALSE	370	-0.377368469329801	39	15246548	20212233	NA	2	NA	NA	2	NA	4965685	NA	18	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DTWD1	15	49620980	49656232	FALSE	906	-0.753975485974629	19	49508303	51105073	0.365165917639896	1	0	0.365165917639896	1	0	1596770	1	12	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	DTWD2	5	118837322	118988545	FALSE	331	-0.706980197323045	20	112861366	122075379	0.365165917639896	1	0	0.365165917639896	1	0	9214013	1	31	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	DTX1	12	113056709	113098028	TRUE	805	2.29687841861702	110	113056884	113098029	0.364342740527346	33	NA	0.364342740527346	33	NA	41145	NA	1	21	3	FALSE	AMP	PASS
659_bTo_pair	DTX2	7	76461676	76505995	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	12	3	FALSE	DIPLOID	PASS
659_bTo_pair	DTX3	12	57604622	57609804	FALSE	782	-0.458497547164839	34	57472671	57623111	NA	2	NA	NA	2	NA	150440	NA	11	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DTX3L	3	122564238	122575203	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	12	1	FALSE	GAIN	PASS
659_bTo_pair	DTX4	11	59171430	59208587	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	13	0	FALSE	GAIN	PASS
659_bTo_pair	DTYMK	2	241675742	241686991	FALSE	194	-0.588828356865968	23	240025214	241817025	0.186356639256811	1	0	0.186356639256811	1	0	1791811	1	34	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	DUOX1	15	45129933	45165576	FALSE	904	-0.666047806656427	20	44736698	49422632	0.365165917639896	1	0	0.365165917639896	1	0	4685934	1	30	37	5	FALSE	HETLOSS	PASS
659_bTo_pair	DUOX2	15	45092650	45114344	FALSE	904	-0.666047806656427	20	44736698	49422632	0.365165917639896	1	0	0.365165917639896	1	0	4685934	1	30	35	0	FALSE	HETLOSS	PASS
659_bTo_pair	DUOXA1	15	45117367	45129938	FALSE	904	-0.666047806656427	20	44736698	49422632	0.365165917639896	1	0	0.365165917639896	1	0	4685934	1	30	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	DUOXA2	15	45114321	45118421	FALSE	904	-0.666047806656427	20	44736698	49422632	0.365165917639896	1	0	0.365165917639896	1	0	4685934	1	30	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	DUPD1	10	75037836	75058514	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	5	0	FALSE	CNLOH	PASS
659_bTo_pair	DUS1L	17	82057506	82065887	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	DUS2	16	67987746	68079320	FALSE	979	-0.429457644119204	34	67645299	68698317	NA	2	NA	NA	2	NA	1053018	NA	33	35	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DUS3L	19	5784832	5791238	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	DUS4L	7	107563484	107578464	FALSE	488	-0.464127371400283	34	107070260	116559206	NA	2	NA	NA	2	NA	9488946	NA	33	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DUSP1	5	172768090	172771195	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	DUSP10	1	221701424	221742176	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	DUSP11	2	73762184	73780157	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	DUSP12	1	161749758	161757238	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	DUSP13	10	75094432	75109221	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	10	0	FALSE	CNLOH	PASS
659_bTo_pair	DUSP14	17	37489831	37513501	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	3	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	DUSP15	20	31847637	31870747	FALSE	1201	-0.583226555890856	26	31757461	32331296	NA	2	NA	NA	2	NA	573835	NA	13	13	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DUSP16	12	12474210	12562383	FALSE	751	-0.581914964256938	26	12079319	12707317	NA	2	NA	NA	2	NA	627998	NA	7	10	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DUSP18	22	30652051	30667890	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	4	0	FALSE	CNLOH	PASS
659_bTo_pair	DUSP19	2	183078559	183100005	FALSE	157	-0.495064743595466	30	181539293	185786350	1	2	1	1	2	1	4247057	1	12	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	DUSP2	2	96143166	96145440	FALSE	126	-0.498143911483876	34	95935616	96208449	NA	2	NA	NA	2	NA	272833	NA	6	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DUSP21	23	44844004	44844888	FALSE	1290	-0.118437036786996	53	41447899	44844689	0.273255132087987	4	NA	0.273255132087987	4	NA	3396790	NA	11	3	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	DUSP22	6	291630	351355	TRUE	364	0.41941396164094	66	292515	401444	0.364342740527346	7	NA	0.364342740527346	7	NA	108929	NA	2	8	3	FALSE	INDETERMINATE	PASS
659_bTo_pair	DUSP23	1	159780932	159782543	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	DUSP26	8	33591332	33600106	FALSE	528	-1.13877676700397	7	33372685	36932925	0.365165917639896	0	0	0.365165917639896	0	0	3560240	0	7	4	0	FALSE	HOMDEL	PASS
659_bTo_pair	DUSP27	1	167094045	167129165	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	DUSP28	2	240560054	240564014	FALSE	194	-0.588828356865968	23	240025214	241817025	0.186356639256811	1	0	0.186356639256811	1	0	1791811	1	34	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	DUSP3	17	43766121	43778988	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DUSP4	8	29333064	29350668	TRUE	524	-0.752404429217175	19	29337070	31032666	0.365165917639896	1	0	0.365165917639896	1	0	1695596	1	13	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	DUSP5	10	110497838	110511544	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	6	0	FALSE	CNLOH	PASS
659_bTo_pair	DUSP6	12	89347232	89353271	FALSE	794	-0.258431968401282	46	85301316	91178343	0.298322295679939	3	NA	0.298322295679939	3	NA	5877027	NA	19	6	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	DUSP7	3	52048919	52056550	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	DUSP8	11	1554044	1571920	FALSE	679	-0.702000712925199	21	1256247	1938477	0.140309795179477	0	0	0.140309795179477	0	0	682230	0	19	10	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	DUSP9	23	153642492	153651326	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	6	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	DUT	15	48331011	48343373	FALSE	904	-0.666047806656427	20	44736698	49422632	0.365165917639896	1	0	0.365165917639896	1	0	4685934	1	30	9	2	FALSE	HETLOSS	PASS
659_bTo_pair	DUXA	19	57154021	57167443	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	DUXB	16	75693929	75701459	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	DVL1	1	1335276	1349350	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	15	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	DVL2	17	7225341	7234545	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	DVL3	3	184155311	184173614	FALSE	259	-0.260370931250901	44	183654025	185254015	0.345317016959666	3	1	0.345317016959666	3	1	1599990	2	31	17	0	FALSE	GAIN	PASS
659_bTo_pair	DWORF	3	155290229	155293775	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	2	0	FALSE	GAIN	PASS
659_bTo_pair	DXO	6	31969810	31972292	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	DYDC1	10	80336105	80356755	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	6	0	FALSE	CNLOH	PASS
659_bTo_pair	DYDC2	10	80344745	80368073	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	6	0	FALSE	CNLOH	PASS
659_bTo_pair	DYM	18	49041474	49461347	FALSE	1103	-0.712987700962632	19	48029643	51023578	0.365165917639896	1	0	0.365165917639896	1	0	2993935	1	20	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	DYNAP	18	54587757	54599493	FALSE	1105	-0.785555027616249	16	52752095	58670682	0.365165917639896	1	0	0.365165917639896	1	0	5918587	1	19	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	DYNC1H1	14	101964510	102056443	FALSE	876	-0.546199181806584	27	96039535	102050530	1	2	1	1	2	1	6010995	1	30	88	8	FALSE	DIPLOID	PASS
659_bTo_pair	DYNC1I1	7	95772506	96110322	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	DYNC1I2	2	171687409	171748420	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	DYNC1LI1	3	32525971	32570874	FALSE	209	-0.637968449787088	26	31990360	37328493	NA	2	NA	NA	2	NA	5338133	NA	26	14	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DYNC1LI2	16	66720893	66751798	FALSE	973	-0.642771892390385	26	64948130	66912568	NA	2	NA	NA	2	NA	1964438	NA	17	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DYNC2H1	11	103109410	103479863	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	96	3	FALSE	HETLOSS	PASS
659_bTo_pair	DYNC2LI1	2	43774039	43810010	FALSE	106	-0.392858868113437	39	42335725	46184779	NA	2	NA	NA	2	NA	3849054	NA	22	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DYNLL1	12	120469850	120498493	FALSE	810	-0.438737881374958	34	120127967	120903912	NA	2	NA	NA	2	NA	775945	NA	20	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DYNLL2	17	58083415	58095536	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DYNLRB1	20	34516409	34540958	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	DYNLRB2	16	80540734	80550760	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	DYNLT1	6	158636474	158644739	FALSE	442	-0.485239870020868	34	157293045	158767513	NA	2	NA	NA	2	NA	1474468	NA	11	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DYNLT3	23	37836757	37847637	FALSE	1286	-0.229369008369366	46	37655739	38687617	0.298322295679939	3	NA	0.298322295679939	3	NA	1031878	NA	12	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	DYRK1A	21	37365573	37526358	FALSE	1228	-0.430637379115077	30	36009679	38367602	1	2	1	1	2	1	2357923	1	17	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	DYRK1B	19	39825350	39834201	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	13	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	DYRK2	12	67648338	67665406	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	DYRK3	1	206635536	206684419	FALSE	69	-0.48847123055109	34	205798087	206732058	NA	2	NA	NA	2	NA	933971	NA	14	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DYRK4	12	4562204	4615302	FALSE	741	-0.251609480735115	44	4489790	6567957	0.345317016959666	3	1	0.345317016959666	3	1	2078167	2	28	13	1	FALSE	GAIN	PASS
659_bTo_pair	DYSF	2	71453722	71686768	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	59	2	FALSE	DIPLOID	PASS
659_bTo_pair	DYTN	2	206651621	206718396	FALSE	168	-0.499602545595775	30	203936898	208231285	1	2	1	1	2	1	4294387	1	25	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	DZANK1	20	18383367	18467281	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	21	4	FALSE	DIPLOID	PASS
659_bTo_pair	DZIP1	13	95578202	95644703	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	21	1	FALSE	CNLOH	PASS
659_bTo_pair	DZIP1L	3	138061990	138115818	FALSE	244	-0.465451876797886	34	136855703	138629155	NA	2	NA	NA	2	NA	1773452	NA	14	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	DZIP3	3	108589682	108694846	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	33	0	FALSE	GAIN	PASS
659_bTo_pair	E2F1	20	33675683	33686404	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	E2F2	1	23506430	23531220	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	E2F3	6	20401906	20493715	FALSE	371	2.11427751003932	107	20401946	20493710	0.364342740527346	29	NA	0.364342740527346	29	NA	91764	NA	1	24	0	FALSE	AMP	PASS
659_bTo_pair	E2F4	16	67192169	67198918	FALSE	976	-0.467350965811123	34	67110264	67538977	NA	2	NA	NA	2	NA	428713	NA	24	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	E2F5	8	85177225	85217158	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	12	0	FALSE	GAIN	PASS
659_bTo_pair	E2F6	2	11444375	11466177	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	E2F7	12	77021247	77065580	FALSE	793	-0.510041181295141	29	76355979	85286979	NA	2	NA	NA	2	NA	8931000	NA	22	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	E2F8	11	19224063	19241620	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	E4F1	16	2223566	2235742	FALSE	942	-0.803500535593988	16	2178660	2530995	0.365165917639896	1	0	0.365165917639896	1	0	352335	1	18	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	EAF1	3	15427355	15450635	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	EAF2	3	121835183	121886526	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	7	1	FALSE	GAIN	PASS
659_bTo_pair	EAPP	14	34515929	34539711	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	EARS2	16	23522014	23557731	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	EBAG9	8	109539711	109565996	FALSE	561	-0.210477706860293	47	102652438	116770243	0.365165917639896	3	1	0.365165917639896	3	1	14117805	2	32	6	0	FALSE	GAIN	PASS
659_bTo_pair	EBF1	5	158695916	159099761	FALSE	353	-0.698571741790457	22	157138801	161546576	0.291335969972972	1	0	0.291335969972972	1	0	4407775	1	29	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	EBF2	8	25841730	26045397	FALSE	520	-0.862302460890099	13	23703081	26040940	0.365165917639896	1	0	0.365165917639896	1	0	2337859	1	12	16	1	TRUE	HETLOSS	PASS
659_bTo_pair	EBF3	10	129835283	129963841	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	17	0	FALSE	CNLOH	PASS
659_bTo_pair	EBF4	20	2692878	2760108	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	EBI3	19	4229498	4237531	FALSE	1124	-0.62008955817668	23	4168484	5151543	0.186356639256811	1	0	0.186356639256811	1	0	983059	1	28	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	EBLN1	10	22208814	22210021	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	5	0	FALSE	CNLOH	PASS
659_bTo_pair	EBLN2	3	73061659	73063337	FALSE	232	-0.785224171872638	14	72888305	88156485	0.365165917639896	1	0	0.365165917639896	1	0	15268180	1	18	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	EBNA1BP2	1	43164175	43270936	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	37	0	FALSE	DIPLOID	PASS
659_bTo_pair	EBP	23	48521158	48528716	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	EBPL	13	49660723	49691475	FALSE	835	-0.766581964775609	19	48490223	50953919	0.365165917639896	1	0	0.365165917639896	1	0	2463696	1	18	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	ECD	10	73130155	73169055	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	15	1	FALSE	CNLOH	PASS
659_bTo_pair	ECE1	1	21217247	21345572	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	23	2	FALSE	DIPLOID	PASS
659_bTo_pair	ECE2	3	184276011	184293031	FALSE	259	-0.260370931250901	44	183654025	185254015	0.345317016959666	3	1	0.345317016959666	3	1	1599990	2	31	21	0	FALSE	GAIN	PASS
659_bTo_pair	ECEL1	2	232479827	232487828	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	ECH1	19	38815422	38832005	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	ECHDC1	6	127288710	127343609	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	ECHDC2	1	52895910	52927212	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	ECHDC3	10	11742366	11764070	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	6	0	FALSE	CNLOH	PASS
659_bTo_pair	ECHS1	10	133362480	133373689	FALSE	676	-0.612597388333807	25	132187132	133626712	0.365165917639896	1	0	0.365165917639896	1	0	1439580	1	27	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ECI1	16	2239395	2252300	FALSE	942	-0.803500535593988	16	2178660	2530995	0.365165917639896	1	0	0.365165917639896	1	0	352335	1	18	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	ECI2	6	4115689	4135597	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	ECM1	1	150508062	150513789	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	ECM2	9	92493554	92536655	FALSE	606	-0.547644280946133	27	91214370	95094057	1	2	1	1	2	1	3879687	1	31	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	ECPAS	9	111360692	111484745	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	51	4	FALSE	DIPLOID	PASS
659_bTo_pair	ECSCR	5	139448556	139462743	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ECSIT	19	11505916	11529174	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ECT2	3	172750682	172821474	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	26	0	FALSE	GAIN	PASS
659_bTo_pair	ECT2L	6	138795926	138904070	TRUE	429	-0.412609995390511	39	138092232	142443520	NA	2	NA	NA	2	NA	4351288	NA	18	21	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EDA	23	69616067	70039469	FALSE	1311	0.0481524733197309	56	68048478	70452009	0.365165917639896	4	NA	0.365165917639896	4	NA	2403531	NA	19	12	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	EDA2R	23	66595637	66639298	FALSE	1307	-0.0742378241560309	55	64268602	66615968	0.328696605851359	4	NA	0.328696605851359	4	NA	2347366	NA	8	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	EDAR	2	108894471	108989372	FALSE	134	-0.415117895462051	39	108786846	111117811	NA	2	NA	NA	2	NA	2330965	NA	16	12	4	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EDARADD	1	236348257	236502915	FALSE	82	-0.550278310688863	27	235196044	241494870	1	2	1	1	2	1	6298826	1	22	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	EDC3	15	74630558	74696292	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	EDC4	16	67873023	67884503	FALSE	979	-0.429457644119204	34	67645299	68698317	NA	2	NA	NA	2	NA	1053018	NA	33	27	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EDDM13	19	56272769	56310450	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	15	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	EDDM3A	14	20745892	20748380	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	2	1	FALSE	DIPLOID	PASS
659_bTo_pair	EDDM3B	14	20768427	20770948	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	EDEM1	3	5187646	5219957	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	14	2	FALSE	HETLOSS	PASS
659_bTo_pair	EDEM2	20	35115357	35147364	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	EDEM3	1	184690231	184754913	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	23	0	FALSE	DIPLOID	PASS
659_bTo_pair	EDF1	9	136862119	136866286	FALSE	631	-1.04738377038343	8	136673897	136866235	0.342391532111247	0	0	0.342391532111247	0	0	192338	0	15	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	EDIL3	5	83940554	84384793	FALSE	327	-0.729214269739125	19	80961009	86619409	0.365165917639896	1	0	0.365165917639896	1	0	5658400	1	14	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	EDN1	6	12290363	12297194	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	EDN2	1	41478775	41484673	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	EDN3	20	59300427	59325992	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	EDNRA	4	147480917	147544954	FALSE	300	-0.423460920061428	34	143186078	151174790	NA	2	NA	NA	2	NA	7988712	NA	32	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EDNRB	13	77895481	77975529	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	11	0	FALSE	CNLOH	PASS
659_bTo_pair	EDRF1	10	125719515	125764143	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	26	1	FALSE	CNLOH	PASS
659_bTo_pair	EEA1	12	92770637	92929331	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	32	1	FALSE	DIPLOID	PASS
659_bTo_pair	EED	11	86244544	86278813	TRUE	713	1.8602990076111	100	86201371	86302469	0.364342740527346	24	NA	0.364342740527346	24	NA	101098	NA	2	19	1	FALSE	AMP	PASS
659_bTo_pair	EEF1A1	6	73515750	73523797	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	EEF1A2	20	63488012	63499322	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	11	2	FALSE	DIPLOID	PASS
659_bTo_pair	EEF1AKMT1	13	20728731	20773958	FALSE	819	-0.883807164728579	13	19173884	20902691	0.365165917639896	1	0	0.365165917639896	1	0	1728807	1	14	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	EEF1AKMT2	10	124748149	124791870	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	7	0	FALSE	CNLOH	PASS
659_bTo_pair	EEF1AKMT3	12	57771492	57782541	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	EEF1AKMT4	3	184249650	184259585	FALSE	259	-0.260370931250901	44	183654025	185254015	0.345317016959666	3	1	0.345317016959666	3	1	1599990	2	31	6	1	FALSE	GAIN	PASS
659_bTo_pair	EEF1AKMT4-ECE2	3	184249695	184293031	FALSE	259	-0.260370931250901	44	183654025	185254015	0.345317016959666	3	1	0.345317016959666	3	1	1599990	2	31	30	2	FALSE	GAIN	PASS
659_bTo_pair	EEF1B2	2	206159585	206162928	FALSE	168	-0.499602545595775	30	203936898	208231285	1	2	1	1	2	1	4294387	1	25	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	EEF1D	8	143579697	143599541	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	18	2	FALSE	DIPLOID	PASS
659_bTo_pair	EEF1E1	6	8073360	8102578	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	EEF1E1-BLOC1S5	6	8015726	8102530	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	EEF1G	11	62559601	62574086	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	11	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	EEF2	19	3976056	3985469	FALSE	1122	-0.653400653967241	21	3157829	4037863	0.140309795179477	0	0	0.140309795179477	0	0	880034	0	27	20	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	EEF2K	16	22206282	22288732	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	19	1	FALSE	DIPLOID	PASS
659_bTo_pair	EEF2KMT	16	5084304	5097808	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	EEFSEC	3	128153454	128408646	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	10	0	FALSE	GAIN	PASS
659_bTo_pair	EEPD1	7	36153149	36301543	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	11	0	FALSE	GAIN	PASS
659_bTo_pair	EFCAB1	8	48710789	48735311	FALSE	543	-0.403572692824667	39	47962754	54147613	NA	2	NA	NA	2	NA	6184859	NA	18	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EFCAB10	7	105565120	105600875	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	EFCAB11	14	89794669	89954777	FALSE	870	-0.471399657488227	30	81180359	92000019	1	2	1	1	2	1	10819660	1	29	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	EFCAB12	3	129401321	129428651	FALSE	240	-0.311262736248051	40	128620554	130098189	0.308149309490068	3	1	0.308149309490068	3	1	1477635	2	22	11	3	FALSE	GAIN	PASS
659_bTo_pair	EFCAB13	17	47323290	47441312	FALSE	1046	-0.746772159255206	19	45395806	47696360	0.365165917639896	1	0	0.365165917639896	1	0	2300554	1	26	25	4	FALSE	HETLOSS	PASS
659_bTo_pair	EFCAB14	1	46675159	46719064	FALSE	16	-0.485631979032023	30	46175602	48453048	1	2	1	1	2	1	2277446	1	32	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	EFCAB2	1	244969705	245127164	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	EFCAB3	17	62343941	62416479	FALSE	1064	-0.419094292936043	39	61867575	63873599	NA	2	NA	NA	2	NA	2006024	NA	24	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EFCAB5	17	29929200	30108452	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	33	3	FALSE	DIPLOID	PASS
659_bTo_pair	EFCAB6	22	43528744	43812337	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	34	5	FALSE	CNLOH	PASS
659_bTo_pair	EFCAB7	1	63523372	63572693	FALSE	21	-0.414935064922519	39	59321678	64830856	NA	2	NA	NA	2	NA	5509178	NA	22	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EFCAB8	20	32858923	32961609	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	28	1	FALSE	DIPLOID	PASS
659_bTo_pair	EFCAB9	5	172194172	172203452	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	EFCC1	3	129001629	129040742	FALSE	240	-0.311262736248051	40	128620554	130098189	0.308149309490068	3	1	0.308149309490068	3	1	1477635	2	22	10	2	FALSE	GAIN	PASS
659_bTo_pair	EFEMP1	2	55865967	55924139	FALSE	112	-0.500204609420994	34	55349629	58154733	NA	2	NA	NA	2	NA	2805104	NA	7	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EFEMP2	11	65866441	65873592	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	11	0	FALSE	GAIN	PASS
659_bTo_pair	EFHB	3	19879472	19947025	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	16	3	FALSE	HETLOSS	PASS
659_bTo_pair	EFHC1	6	52362123	52529886	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	28	0	FALSE	DIPLOID	PASS
659_bTo_pair	EFHC2	23	44147882	44343672	FALSE	1290	-0.118437036786996	53	41447899	44844689	0.273255132087987	4	NA	0.273255132087987	4	NA	3396790	NA	11	18	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	EFHD1	2	232606057	232682781	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	EFHD2	1	15409895	15430343	FALSE	6	-0.41295085321191	39	13779356	15847467	NA	2	NA	NA	2	NA	2068111	NA	18	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EFL1	15	82130230	82262763	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	23	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	EFNA1	1	155127460	155134857	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	EFNA2	19	1286154	1300237	FALSE	1116	-0.668595541323287	22	1229189	1605424	0.291335969972972	1	0	0.291335969972972	1	0	376235	1	21	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	EFNA3	1	155078872	155087538	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	EFNA4	1	155063731	155069553	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	EFNA5	5	107376889	107670895	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	EFNB1	23	68828997	68842147	FALSE	1311	0.0481524733197309	56	68048478	70452009	0.365165917639896	4	NA	0.365165917639896	4	NA	2403531	NA	19	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	EFNB2	13	106489731	106535662	FALSE	842	-0.555564796404534	26	103046205	109206791	NA	2	NA	NA	2	NA	6160586	NA	9	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EFNB3	17	7705202	7711378	FALSE	1002	-0.806633716627379	14	7689340	8047671	0.365165917639896	1	0	0.365165917639896	1	0	358331	1	15	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	EFR3A	8	131904088	132013642	FALSE	565	-0.282741903777565	44	129748604	134610527	0.345317016959666	3	1	0.345317016959666	3	1	4861923	2	18	24	1	FALSE	GAIN	PASS
659_bTo_pair	EFR3B	2	25042130	25159137	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	23	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EFS	14	23356402	23365752	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	10	3	FALSE	DIPLOID	PASS
659_bTo_pair	EFTUD2	17	44849943	44899662	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	29	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EGF	4	109912884	110012266	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	26	2	FALSE	DIPLOID	PASS
659_bTo_pair	EGFL6	23	13569605	13633575	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	13	1	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	EGFL7	9	136658856	136672678	FALSE	630	0.99080673755466	78	136489472	136672669	0.364342740527346	11	NA	0.364342740527346	11	NA	183197	NA	2	18	0	FALSE	AMP	PASS
659_bTo_pair	EGFL8	6	32164583	32168281	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	EGFLAM	5	38258409	38465021	FALSE	314	-0.173277106490387	51	35904615	38924434	0.365165917639896	3	NA	0.365165917639896	3	NA	3019819	NA	16	25	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	EGFR	7	55019021	55211628	FALSE	468	2.71757314172458	117	55019291	55216699	0.364342740527346	46	NA	0.364342740527346	46	NA	197408	NA	1	174	0	FALSE	AMP	PASS
659_bTo_pair	EGLN1	1	231363751	231425044	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	EGLN2	19	40798996	40808433	FALSE	1173	-0.760690164248215	19	40322104	40807873	0.365165917639896	1	0	0.365165917639896	1	0	485769	1	21	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	EGLN3	14	33924231	34462774	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	EGR1	5	138465490	138469315	TRUE	336	-0.752536733071469	19	135941639	138575278	0.365165917639896	1	0	0.365165917639896	1	0	2633639	1	24	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	EGR2	10	62811996	62919900	FALSE	648	1.59189026994828	93	62805132	62815942	0.364342740527346	19	NA	0.364342740527346	19	NA	10810	NA	2	7	0	FALSE	AMP	PASS
659_bTo_pair	EGR3	8	22687659	22693302	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	EGR4	2	73290929	73293705	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	EHBP1	2	62673851	63046487	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	28	0	FALSE	DIPLOID	PASS
659_bTo_pair	EHBP1L1	11	65576038	65592650	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	28	0	FALSE	GAIN	PASS
659_bTo_pair	EHD1	11	64851642	64888296	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	10	0	FALSE	GAIN	PASS
659_bTo_pair	EHD2	19	47713343	47743134	FALSE	1187	-0.64296711085636	26	47021158	48297657	NA	2	NA	NA	2	NA	1276499	NA	31	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EHD3	2	31234337	31269447	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	EHD4	15	41895939	41972578	FALSE	897	-0.755497767970361	19	41841591	42081025	0.365165917639896	1	0	0.365165917639896	1	0	239434	1	6	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	EHF	11	34621093	34661057	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	EHHADH	3	185190624	185281990	FALSE	259	-0.260370931250901	44	183654025	185254015	0.345317016959666	3	1	0.345317016959666	3	1	1599990	2	31	12	0	FALSE	GAIN	PASS
659_bTo_pair	EHMT1	9	137618963	137870016	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	32	1	FALSE	HETLOSS	PASS
659_bTo_pair	EHMT2	6	31879759	31897687	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	29	5	FALSE	HETLOSS	PASS
659_bTo_pair	EI24	11	125569216	125584687	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	EID1	15	48877886	48880183	FALSE	904	-0.666047806656427	20	44736698	49422632	0.365165917639896	1	0	0.365165917639896	1	0	4685934	1	30	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	EID2	19	39538705	39540333	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	3	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	EID2B	19	39530990	39532854	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	2	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	EID3	12	104303739	104305205	FALSE	798	-0.492720037723834	34	102839233	105367537	NA	2	NA	NA	2	NA	2528304	NA	20	4	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EIF1	17	41688885	41692668	FALSE	1036	-0.764029118419186	19	41624551	42193564	0.365165917639896	1	0	0.365165917639896	1	0	569013	1	25	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	EIF1AD	11	65996545	66002176	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	5	1	FALSE	GAIN	PASS
659_bTo_pair	EIF1AX	23	20124518	20141844	FALSE	1277	2.84599794021952	118	20116861	20141698	0.364342740527346	51	NA	0.364342740527346	51	NA	24837	NA	2	19	1	FALSE	AMP	PASS
659_bTo_pair	EIF1B	3	40309684	40312424	FALSE	212	-0.750996176556328	19	38165958	40533064	0.365165917639896	1	0	0.365165917639896	1	0	2367106	1	26	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	EIF2A	3	150546678	150584242	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	16	2	FALSE	GAIN	PASS
659_bTo_pair	EIF2AK1	7	6022244	6059230	FALSE	455	0.0869447764468888	59	5592963	6026819	0.308533751035793	5	NA	0.308533751035793	5	NA	433856	NA	8	24	5	TRUE	AMP (many states)	PASS
659_bTo_pair	EIF2AK2	2	37099210	37157065	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	EIF2AK3	2	88556741	88627576	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	21	4	FALSE	DIPLOID	PASS
659_bTo_pair	EIF2AK4	15	39934146	40035591	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	43	4	FALSE	HETLOSS	PASS
659_bTo_pair	EIF2B1	12	123620406	123633766	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	EIF2B2	14	75002911	75012366	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	EIF2B3	1	44850522	44986722	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	EIF2B4	2	27364352	27370486	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	EIF2B5	3	184135038	184146112	FALSE	259	-0.260370931250901	44	183654025	185254015	0.345317016959666	3	1	0.345317016959666	3	1	1599990	2	31	18	2	FALSE	GAIN	PASS
659_bTo_pair	EIF2D	1	206571292	206612463	FALSE	69	-0.48847123055109	34	205798087	206732058	NA	2	NA	NA	2	NA	933971	NA	14	20	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EIF2S1	14	67359997	67386516	FALSE	862	-0.496151350288089	31	65561584	67816009	1	2	1	1	2	1	2254425	1	17	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	EIF2S2	20	34088298	34112332	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	EIF2S3	23	24054716	24077971	FALSE	1279	0.732858679270306	74	23938620	24365274	0.364342740527346	9	NA	0.364342740527346	9	NA	426654	NA	4	12	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	EIF2S3B	12	10505602	10523135	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	EIF3A	10	119033670	119080823	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	26	0	FALSE	CNLOH	PASS
659_bTo_pair	EIF3B	7	2354086	2380745	FALSE	450	-0.329551508654045	40	193185	2379492	0.308149309490068	3	1	0.308149309490068	3	1	2186307	2	26	19	0	FALSE	GAIN	PASS
659_bTo_pair	EIF3C	16	28688558	28735730	FALSE	962	-0.522336070959039	29	27403203	28925074	NA	2	NA	NA	2	NA	1521871	NA	25	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EIF3D	22	36510850	36529436	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	15	0	FALSE	CNLOH	PASS
659_bTo_pair	EIF3E	8	108201216	108435333	FALSE	561	-0.210477706860293	47	102652438	116770243	0.365165917639896	3	1	0.365165917639896	3	1	14117805	2	32	13	0	FALSE	GAIN	PASS
659_bTo_pair	EIF3F	11	7970251	8001862	FALSE	683	-0.403180715137318	35	6615199	8138345	1	2	1	1	2	1	1523146	1	28	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	EIF3G	19	10115017	10119918	FALSE	1136	-0.657304673205362	21	8981156	10119920	0.140309795179477	0	0	0.140309795179477	0	0	1138764	0	32	10	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	EIF3H	8	116642130	116766925	FALSE	561	-0.210477706860293	47	102652438	116770243	0.365165917639896	3	1	0.365165917639896	3	1	14117805	2	32	9	0	FALSE	GAIN	PASS
659_bTo_pair	EIF3I	1	32221928	32231604	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	EIF3J	15	44537057	44563029	FALSE	902	-0.672637691845835	22	43521582	44676538	0.291335969972972	1	0	0.291335969972972	1	0	1154956	1	21	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	EIF3K	19	38619082	38636955	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	EIF3L	22	37848868	37889407	FALSE	1263	-0.528184158498335	29	36991204	37967644	NA	2	NA	NA	2	NA	976440	NA	31	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EIF3M	11	32583798	32606262	FALSE	692	-0.391103687852083	35	32583952	33774394	1	2	1	1	2	1	1190442	1	13	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	EIF4A1	17	7572706	7579005	FALSE	1000	-0.750226164220686	19	7324407	7655594	0.365165917639896	1	0	0.365165917639896	1	0	331187	1	31	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	EIF4A2	3	186783205	186789900	FALSE	264	1.37616970345013	87	186783296	186790183	0.364342740527346	16	NA	0.364342740527346	16	NA	6887	NA	2	15	0	FALSE	AMP	PASS
659_bTo_pair	EIF4A3	17	80135214	80147183	FALSE	1081	-0.503130193321286	34	78873805	80288187	NA	2	NA	NA	2	NA	1414382	NA	19	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EIF4B	12	53006158	53042209	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	EIF4E	4	98871684	98930637	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	14	2	FALSE	DIPLOID	PASS
659_bTo_pair	EIF4E1B	5	176630618	176646641	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	EIF4E2	2	232550052	232583644	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	EIF4E3	3	71675416	71754773	FALSE	230	-1.02914185439516	8	71684725	71785057	0.342391532111247	0	0	0.342391532111247	0	0	100332	0	4	10	1	FALSE	HOMDEL	PASS
659_bTo_pair	EIF4EBP1	8	38030341	38060365	FALSE	532	-0.898955944857558	13	37845201	38269206	0.365165917639896	1	0	0.365165917639896	1	0	424005	1	12	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	EIF4EBP2	10	70404379	70428618	FALSE	651	-0.523280686314431	28	68722553	70760843	0.351300687168522	2	0	0.351300687168522	2	0	2038290	2	27	4	0	FALSE	CNLOH	PASS
659_bTo_pair	EIF4EBP3	5	140547666	140549578	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	3	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	EIF4ENIF1	22	31436977	31496108	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	20	2	FALSE	CNLOH	PASS
659_bTo_pair	EIF4G1	3	184314495	184335358	FALSE	259	-0.260370931250901	44	183654025	185254015	0.345317016959666	3	1	0.345317016959666	3	1	1599990	2	31	36	1	FALSE	GAIN	PASS
659_bTo_pair	EIF4G2	11	10797050	10809110	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	21	1	FALSE	DIPLOID	PASS
659_bTo_pair	EIF4G3	1	20806292	21176888	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	36	1	FALSE	DIPLOID	PASS
659_bTo_pair	EIF4H	7	74174245	74197101	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	EIF5	14	103333544	103345025	FALSE	880	-0.612786833130899	26	102922742	103500099	NA	2	NA	NA	2	NA	577357	NA	7	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EIF5A	17	7306999	7312463	FALSE	999	0.337193926194085	65	7307123	7323993	0.364342740527346	6	NA	0.364342740527346	6	NA	16870	NA	4	9	0	FALSE	AMP (many states)	PASS
659_bTo_pair	EIF5A2	3	170888415	170908693	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	4	0	FALSE	GAIN	PASS
659_bTo_pair	EIF5AL1	10	79512601	79516440	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	2	0	FALSE	CNLOH	PASS
659_bTo_pair	EIF5B	2	99337353	99401326	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	28	3	FALSE	DIPLOID	PASS
659_bTo_pair	EIF6	20	35278911	35284985	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	6	2	FALSE	DIPLOID	PASS
659_bTo_pair	EIPR1	2	3188925	3377882	FALSE	89	-0.524158836377085	27	41620	3847167	1	2	1	1	2	1	3805547	1	18	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	ELAC1	18	50967991	50988121	FALSE	1103	-0.712987700962632	19	48029643	51023578	0.365165917639896	1	0	0.365165917639896	1	0	2993935	1	20	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	ELAC2	17	12992391	13018187	FALSE	1009	-0.493836167698037	33	12666172	16027364	0.344071079426502	2	0	0.344071079426502	2	0	3361192	2	21	26	0	FALSE	CNLOH	PASS
659_bTo_pair	ELANE	19	851014	856247	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ELAVL1	19	7958579	8005659	FALSE	1132	-0.583194501817822	26	7916513	8843246	NA	2	NA	NA	2	NA	926733	NA	25	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ELAVL2	9	23690104	23826337	FALSE	585	-0.464842894155678	32	22447079	32572950	0.365165917639896	2	0	0.365165917639896	2	0	10125871	2	19	8	0	FALSE	CNLOH	PASS
659_bTo_pair	ELAVL3	19	11451326	11481046	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	ELAVL4	1	50048014	50203786	FALSE	17	-0.451021898823112	34	48472019	50857895	NA	2	NA	NA	2	NA	2385876	NA	6	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ELF1	13	40932028	41061440	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	ELF2	4	139028112	139177218	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	18	1	FALSE	DIPLOID	PASS
659_bTo_pair	ELF3	1	202007945	202017188	TRUE	63	1.79801161960695	98	202008126	202017117	0.364342740527346	23	NA	0.364342740527346	23	NA	8991	NA	1	28	4	FALSE	AMP	PASS
659_bTo_pair	ELF4	23	130064874	130110716	FALSE	1335	0.100243493544559	59	130066940	134244999	0.308533751035793	5	NA	0.308533751035793	5	NA	4178059	NA	21	11	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ELF5	11	34478793	34513805	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ELFN1	7	1688119	1747954	FALSE	450	-0.329551508654045	40	193185	2379492	0.308149309490068	3	1	0.308149309490068	3	1	2186307	2	26	10	0	FALSE	GAIN	PASS
659_bTo_pair	ELFN2	22	37367960	37427470	FALSE	1263	-0.528184158498335	29	36991204	37967644	NA	2	NA	NA	2	NA	976440	NA	31	10	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ELK1	23	47635521	47650604	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	8	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ELK3	12	96194382	96269835	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	ELK4	1	205597556	205631962	FALSE	66	-0.597189828646048	26	204618263	205619845	NA	2	NA	NA	2	NA	1001582	NA	13	10	1	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	ELL	19	18442663	18522127	FALSE	1159	-0.165917001507678	49	18177228	19138502	0.365165917639896	3	1	0.365165917639896	3	1	961274	2	36	14	0	FALSE	GAIN	PASS
659_bTo_pair	ELL2	5	95885098	95962071	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	ELL3	15	43772600	43777543	FALSE	902	-0.672637691845835	22	43521582	44676538	0.291335969972972	1	0	0.291335969972972	1	0	1154956	1	21	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	ELMO1	7	36854361	37449249	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	21	1	FALSE	GAIN	PASS
659_bTo_pair	ELMO2	20	46366049	46432985	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	21	1	FALSE	DIPLOID	PASS
659_bTo_pair	ELMO3	16	67199111	67204029	FALSE	976	-0.467350965811123	34	67110264	67538977	NA	2	NA	NA	2	NA	428713	NA	24	18	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ELMOD1	11	107591091	107666779	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	ELMOD2	4	140524158	140553770	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	ELMOD3	2	85354394	85391752	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	ELMSAN1	14	73715122	73790285	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	ELN	7	74027789	74069907	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	34	2	FALSE	DIPLOID	PASS
659_bTo_pair	ELOA	1	23743155	23762059	FALSE	9	0.0247469375259084	56	23553811	23757004	0.365165917639896	4	NA	0.365165917639896	4	NA	203193	NA	3	15	1	TRUE	GAIN (many states)	PASS
659_bTo_pair	ELOA2	18	47032572	47035621	FALSE	1100	-0.758401070483502	19	45624783	47803983	0.365165917639896	1	0	0.365165917639896	1	0	2179200	1	22	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	ELOA3	18	47028202	47030078	FALSE	1100	-0.758401070483502	19	45624783	47803983	0.365165917639896	1	0	0.365165917639896	1	0	2179200	1	22	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	ELOB	16	2771414	2777297	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	ELOC	8	73939169	73972287	FALSE	554	2.41360149859874	112	73945532	73976259	0.364342740527346	37	NA	0.364342740527346	37	NA	30727	NA	2	10	1	FALSE	AMP	PASS
659_bTo_pair	ELOF1	19	11551147	11559236	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	ELOVL1	1	43363397	43368074	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	ELOVL2	6	10980759	11044314	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	ELOVL3	10	102226328	102229589	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	5	0	FALSE	CNLOH	PASS
659_bTo_pair	ELOVL4	6	79914812	79947580	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ELOVL5	6	53267398	53349179	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ELOVL6	4	110045846	110199199	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	ELOVL7	5	60751791	60844389	FALSE	323	-0.645106866010582	25	58495036	67196614	0.365165917639896	1	0	0.365165917639896	1	0	8701578	1	31	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	ELP1	9	108867517	108934116	FALSE	613	-0.484018775274725	34	108869192	109119647	NA	2	NA	NA	2	NA	250455	NA	4	36	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ELP2	18	36129444	36180556	FALSE	1095	-0.699288883997088	20	33734323	36718652	0.365165917639896	1	0	0.365165917639896	1	0	2984329	1	17	23	7	FALSE	HETLOSS	PASS
659_bTo_pair	ELP3	8	28089673	28191156	FALSE	523	-1.08188475411826	8	27469296	29263060	0.342391532111247	0	0	0.342391532111247	0	0	1793764	0	18	15	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ELP4	11	31509700	31790328	FALSE	690	-0.499672577426227	34	26697185	32104345	NA	2	NA	NA	2	NA	5407160	NA	20	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ELP5	17	7251416	7259940	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ELP6	3	47495640	47513761	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	ELSPBP1	19	47994651	48025153	FALSE	1187	-0.64296711085636	26	47021158	48297657	NA	2	NA	NA	2	NA	1276499	NA	31	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EMB	5	50396192	50443248	FALSE	318	0.120209508736467	59	44809552	50399214	0.308533751035793	5	NA	0.308533751035793	5	NA	5589662	NA	3	10	2	TRUE	AMP (many states)	PASS
659_bTo_pair	EMC1	1	19215664	19251552	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	24	5	FALSE	DIPLOID	PASS
659_bTo_pair	EMC10	19	50476400	50490870	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	EMC2	8	108443601	108486918	FALSE	561	-0.210477706860293	47	102652438	116770243	0.365165917639896	3	1	0.365165917639896	3	1	14117805	2	32	13	0	FALSE	GAIN	PASS
659_bTo_pair	EMC3	3	9962537	10011116	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	EMC4	15	34224999	34230156	FALSE	888	-0.723950250184678	19	32774281	34342000	0.365165917639896	1	0	0.365165917639896	1	0	1567719	1	10	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	EMC6	17	3668815	3669668	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	EMC7	15	34084017	34101948	FALSE	888	-0.723950250184678	19	32774281	34342000	0.365165917639896	1	0	0.365165917639896	1	0	1567719	1	10	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	EMC8	16	85771758	85799608	FALSE	987	-0.578642888038652	23	81999201	85806436	0.186356639256811	1	0	0.186356639256811	1	0	3807235	1	31	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	EMC9	14	24138959	24141588	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	EMCN	4	100395341	100880126	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	11	2	FALSE	DIPLOID	PASS
659_bTo_pair	EMD	23	154379197	154381523	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	6	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	EME1	17	50373220	50381483	FALSE	1053	-0.561829441831031	26	49646906	50626743	NA	2	NA	NA	2	NA	979837	NA	25	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EME2	16	1773207	1781708	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	16	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	EMG1	12	6970893	6997428	FALSE	745	-0.243574834353832	44	6965649	8175835	0.345317016959666	3	1	0.345317016959666	3	1	1210186	2	26	17	0	FALSE	GAIN	PASS
659_bTo_pair	EMID1	22	29205851	29259597	FALSE	1257	-0.782237459575943	16	29058831	29265673	0.365165917639896	1	0	0.365165917639896	1	0	206842	1	4	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	EMILIN1	2	27078567	27086408	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	EMILIN2	18	2847030	2915993	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	17	1	FALSE	GAIN	PASS
659_bTo_pair	EMILIN3	20	41359966	41366827	FALSE	1207	-0.45870607109039	34	41137791	42067755	NA	2	NA	NA	2	NA	929964	NA	5	11	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EML1	14	99737693	99942060	FALSE	876	-0.546199181806584	27	96039535	102050530	1	2	1	1	2	1	6010995	1	30	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	EML2	19	45606994	45645629	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	24	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	EML3	11	62602218	62612765	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	23	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	EML4	2	42169350	42332548	FALSE	105	1.32543772235217	87	42169436	42332432	0.364342740527346	15	NA	0.364342740527346	15	NA	162996	NA	1	34	1	FALSE	AMP	PASS
659_bTo_pair	EML5	14	88612431	88792752	FALSE	870	-0.471399657488227	30	81180359	92000019	1	2	1	1	2	1	10819660	1	29	46	2	FALSE	DIPLOID	PASS
659_bTo_pair	EML6	2	54723499	54972025	FALSE	111	-0.244883980498374	46	54612139	55346218	0.298322295679939	3	NA	0.298322295679939	3	NA	734079	NA	7	43	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	EMP1	12	13196716	13219939	FALSE	753	-0.517160615058114	27	12726042	18242949	1	2	1	1	2	1	5516907	1	31	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	EMP2	16	10528422	10580698	FALSE	950	-0.703992637019778	22	10431373	10818487	0.291335969972972	1	0	0.291335969972972	1	0	387114	1	5	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	EMP3	19	48321509	48330553	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	EMSY	11	76444923	76553025	FALSE	709	1.75251833373711	98	76445080	76552564	0.364342740527346	22	NA	0.364342740527346	22	NA	107484	NA	1	40	7	FALSE	AMP	PASS
659_bTo_pair	EMX1	2	72916260	72936071	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	EMX2	10	117542444	117549546	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	4	0	FALSE	CNLOH	PASS
659_bTo_pair	EN1	2	118842171	118847678	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	EN2	7	155458129	155464831	FALSE	509	-0.56054035608462	23	152759958	159144708	0.186356639256811	1	0	0.186356639256811	1	0	6384750	1	20	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	ENAH	1	225486835	225653142	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	ENAM	4	70628744	70686816	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	24	0	FALSE	DIPLOID	PASS
659_bTo_pair	ENC1	5	74627406	74641424	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	ENDOD1	11	95089810	95132645	FALSE	717	-0.427991611956568	34	94512673	100992623	NA	2	NA	NA	2	NA	6479950	NA	19	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ENDOG	9	128818474	128822677	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	4	2	FALSE	HETLOSS	PASS
659_bTo_pair	ENDOU	12	47709734	47725567	FALSE	766	-0.557616146966431	26	45922034	47968195	NA	2	NA	NA	2	NA	2046161	NA	13	11	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ENDOV	17	80415165	80438086	FALSE	1082	-0.489772840961394	34	80288362	80476266	NA	2	NA	NA	2	NA	187904	NA	3	12	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ENG	9	127815012	127854756	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	ENGASE	17	79074939	79088599	FALSE	1081	-0.503130193321286	34	78873805	80288187	NA	2	NA	NA	2	NA	1414382	NA	19	15	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ENHO	9	34521040	34523041	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	2	0	FALSE	CNLOH	PASS
659_bTo_pair	ENKD1	16	67662945	67667265	FALSE	979	-0.429457644119204	34	67645299	68698317	NA	2	NA	NA	2	NA	1053018	NA	33	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ENKUR	10	24981979	25062279	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	16	0	FALSE	CNLOH	PASS
659_bTo_pair	ENO1	1	8861000	8879250	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	ENO2	12	6913745	6923698	FALSE	743	-0.145896859645485	51	6620180	6938488	0.365165917639896	3	NA	0.365165917639896	3	NA	318308	NA	20	12	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	ENO3	17	4948092	4957131	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	13	2	FALSE	HETLOSS	PASS
659_bTo_pair	ENO4	10	116849512	116911788	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	18	0	FALSE	CNLOH	PASS
659_bTo_pair	ENOPH1	4	82430562	82461091	FALSE	289	-0.397475195823872	39	80335777	83458331	NA	2	NA	NA	2	NA	3122554	NA	19	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ENOSF1	18	670324	712676	FALSE	1087	-0.181907359287398	48	580498	712613	0.365165917639896	3	NA	0.365165917639896	3	NA	132115	NA	4	20	3	FALSE	GAIN (many states)	PASS
659_bTo_pair	ENOX1	13	43213518	43786908	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	ENOX2	23	130623369	130903317	FALSE	1335	0.100243493544559	59	130066940	134244999	0.308533751035793	5	NA	0.308533751035793	5	NA	4178059	NA	21	13	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ENPEP	4	110365733	110565285	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	ENPP1	6	131808016	131895155	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	25	0	FALSE	DIPLOID	PASS
659_bTo_pair	ENPP2	8	119557086	119673453	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	28	0	FALSE	GAIN	PASS
659_bTo_pair	ENPP3	6	131628442	131747418	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	38	1	FALSE	DIPLOID	PASS
659_bTo_pair	ENPP4	6	46129993	46146699	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ENPP5	6	46159187	46170971	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	ENPP6	4	184088706	184221230	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	ENPP7	17	79730919	79742222	FALSE	1081	-0.503130193321286	34	78873805	80288187	NA	2	NA	NA	2	NA	1414382	NA	19	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ENSA	1	150600851	150629612	FALSE	47	-0.642778549638746	26	150622836	150876589	NA	2	NA	NA	2	NA	253753	NA	6	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ENTHD1	22	39743044	39893864	FALSE	1267	-0.448885551917151	34	39313004	41087696	NA	2	NA	NA	2	NA	1774692	NA	24	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ENTPD1	10	95711779	95869695	FALSE	663	-0.556688707084635	24	94775074	96952170	0.359751661895656	2	0	0.359751661895656	2	0	2177096	2	21	14	2	FALSE	CNLOH	PASS
659_bTo_pair	ENTPD2	9	137048098	137054045	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	ENTPD3	3	40387156	40428744	FALSE	212	-0.750996176556328	19	38165958	40533064	0.365165917639896	1	0	0.365165917639896	1	0	2367106	1	26	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	ENTPD4	8	23385783	23457695	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	14	1	FALSE	HETLOSS	PASS
659_bTo_pair	ENTPD5	14	73958010	74019399	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	21	1	FALSE	DIPLOID	PASS
659_bTo_pair	ENTPD6	20	25195693	25226729	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	17	1	FALSE	DIPLOID	PASS
659_bTo_pair	ENTPD7	10	99659506	99706240	FALSE	666	-0.516928660882684	29	98163350	100063639	NA	2	NA	NA	2	NA	1900289	NA	16	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ENTPD8	9	137434364	137441816	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	ENTR1	9	136401922	136410609	FALSE	629	-0.955558414525678	9	134750808	136485014	0.291955377254426	0	0	0.291955377254426	0	0	1734206	0	30	11	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ENY2	8	109334324	109345953	FALSE	561	-0.210477706860293	47	102652438	116770243	0.365165917639896	3	1	0.365165917639896	3	1	14117805	2	32	5	0	FALSE	GAIN	PASS
659_bTo_pair	EOGT	3	68975214	69013961	FALSE	228	-0.860828429618822	13	64010871	69385924	0.365165917639896	1	0	0.365165917639896	1	0	5375053	1	16	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	EOMES	3	27715949	27722711	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	EP300	22	41091786	41180079	TRUE	1268	1.47261927370461	90	41092606	41180049	0.364342740527346	17	NA	0.364342740527346	17	NA	87443	NA	1	56	1	FALSE	AMP	PASS
659_bTo_pair	EP400	12	131949920	132081102	TRUE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	62	0	FALSE	DIPLOID	PASS
659_bTo_pair	EPAS1	2	46293667	46386703	FALSE	107	1.27108056739784	86	46297536	46386736	0.364342740527346	15	NA	0.364342740527346	15	NA	89200	NA	1	33	2	FALSE	AMP	PASS
659_bTo_pair	EPB41	1	28887091	29120046	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	20	1	FALSE	DIPLOID	PASS
659_bTo_pair	EPB41L1	20	36091504	36232799	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	24	0	FALSE	DIPLOID	PASS
659_bTo_pair	EPB41L2	6	130839347	131063322	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	25	0	FALSE	DIPLOID	PASS
659_bTo_pair	EPB41L3	18	5392381	5630700	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	27	2	FALSE	GAIN	PASS
659_bTo_pair	EPB41L4A	5	112142441	112419316	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	25	1	FALSE	HETLOSS	PASS
659_bTo_pair	EPB41L4B	9	109171975	109320964	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	29	3	FALSE	DIPLOID	PASS
659_bTo_pair	EPB41L5	2	120013005	120179119	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	25	0	FALSE	DIPLOID	PASS
659_bTo_pair	EPB42	15	43197227	43221125	FALSE	900	-0.777056562410308	17	42718512	43401817	0.365165917639896	1	0	0.365165917639896	1	0	683305	1	13	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	EPC1	10	32267751	32378798	FALSE	640	-0.421497241268382	32	32269100	43094667	0.365165917639896	2	0	0.365165917639896	2	0	10825567	2	20	18	0	FALSE	CNLOH	PASS
659_bTo_pair	EPC2	2	148644440	148787568	FALSE	149	-0.454179855872301	30	147845197	157628657	1	2	1	1	2	1	9783460	1	30	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	EPCAM	2	47345158	47387601	TRUE	109	0.265429574535633	63	47340240	48375433	0.364342740527346	6	NA	0.364342740527346	6	NA	1035193	NA	6	18	1	FALSE	AMP (many states)	PASS
659_bTo_pair	EPDR1	7	37683843	37951941	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	31	7	FALSE	GAIN	PASS
659_bTo_pair	EPG5	18	45847609	45967339	FALSE	1100	-0.758401070483502	19	45624783	47803983	0.365165917639896	1	0	0.365165917639896	1	0	2179200	1	22	49	1	FALSE	HETLOSS	PASS
659_bTo_pair	EPGN	4	74308473	74315307	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	EPHA1	7	143390289	143408892	FALSE	503	-0.495530614890199	34	143026241	143572680	NA	2	NA	NA	2	NA	546439	NA	15	23	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EPHA10	1	37713880	37765133	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	23	0	FALSE	DIPLOID	PASS
659_bTo_pair	EPHA2	1	16124337	16156087	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	24	1	FALSE	DIPLOID	PASS
659_bTo_pair	EPHA3	3	89107524	89482134	TRUE	233	0.74549899886464	74	89107792	89482041	0.364342740527346	9	NA	0.364342740527346	9	NA	374249	NA	1	33	4	FALSE	INDETERMINATE	PASS
659_bTo_pair	EPHA4	2	221418027	221574202	FALSE	177	-0.713780356009728	19	219579555	221572276	0.365165917639896	1	0	0.365165917639896	1	0	1992721	1	3	20	1	FALSE	HETLOSS	PASS
659_bTo_pair	EPHA5	4	65319563	65670495	FALSE	286	1.28495946661364	86	65319612	65670504	0.364342740527346	15	NA	0.364342740527346	15	NA	350892	NA	1	47	10	FALSE	AMP	PASS
659_bTo_pair	EPHA6	3	96814581	97752460	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	27	3	FALSE	GAIN	PASS
659_bTo_pair	EPHA7	6	93240020	93419547	TRUE	410	1.70317160436212	96	93240013	95586454	0.364342740527346	21	NA	0.364342740527346	21	NA	2346441	NA	2	42	5	FALSE	AMP	PASS
659_bTo_pair	EPHA8	1	22563564	22603594	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	19	1	FALSE	DIPLOID	PASS
659_bTo_pair	EPHB1	3	134597801	135260467	TRUE	242	-0.32037413513609	40	130560427	134790274	0.308149309490068	3	1	0.308149309490068	3	1	4229847	2	29	52	0	TRUE	GAIN	PASS
659_bTo_pair	EPHB2	1	22710839	22921500	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	EPHB3	3	184561784	184582409	FALSE	259	-0.260370931250901	44	183654025	185254015	0.345317016959666	3	1	0.345317016959666	3	1	1599990	2	31	20	0	FALSE	GAIN	PASS
659_bTo_pair	EPHB4	7	100802565	100827521	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	EPHB6	7	142855061	142871094	FALSE	501	-0.513243901966068	29	142219948	142940594	NA	2	NA	NA	2	NA	720646	NA	9	21	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EPHX1	1	225810092	225845563	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	8	3	FALSE	DIPLOID	PASS
659_bTo_pair	EPHX2	8	27490779	27545564	FALSE	523	-1.08188475411826	8	27469296	29263060	0.342391532111247	0	0	0.342391532111247	0	0	1793764	0	18	19	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	EPHX3	19	15226919	15233435	FALSE	1150	1.68996571363671	95	15159043	15332467	0.364342740527346	21	9	0.364342740527346	21	9	173424	12	3	8	0	FALSE	AMP	PASS
659_bTo_pair	EPHX4	1	92029982	92063536	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	EPM2A	6	145382535	145736023	FALSE	431	-0.504239059693729	30	143136912	149638436	1	2	1	1	2	1	6501524	1	29	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	EPM2AIP1	3	36985043	36993168	FALSE	209	-0.637968449787088	26	31990360	37328493	NA	2	NA	NA	2	NA	5338133	NA	26	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EPN1	19	55675226	55709858	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	16	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	EPN2	17	19215615	19336715	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	14	0	FALSE	CNLOH	PASS
659_bTo_pair	EPN3	17	50532543	50543750	FALSE	1053	-0.561829441831031	26	49646906	50626743	NA	2	NA	NA	2	NA	979837	NA	25	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EPO	7	100720800	100723700	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	EPOP	17	38671703	38675421	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	EPOR	19	11377205	11384342	FALSE	1144	2.07528795267679	105	11377377	11384255	0.364342740527346	28	NA	0.364342740527346	28	NA	6878	NA	1	14	0	FALSE	AMP	PASS
659_bTo_pair	EPPIN	20	45540626	45547752	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	EPPIN-WFDC6	20	45536986	45547426	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	EPPK1	8	143857324	143878464	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	28	1	FALSE	DIPLOID	PASS
659_bTo_pair	EPRS	1	219968601	220046658	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	35	3	FALSE	DIPLOID	PASS
659_bTo_pair	EPS15	1	51354263	51519328	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	26	0	FALSE	DIPLOID	PASS
659_bTo_pair	EPS15L1	19	16355239	16472085	FALSE	1153	2.82815972466357	118	16324973	16355807	0.364342740527346	50	NA	0.364342740527346	50	NA	30834	NA	2	24	0	TRUE	AMP	PASS
659_bTo_pair	EPS8	12	15620158	15882329	FALSE	753	-0.517160615058114	27	12726042	18242949	1	2	1	1	2	1	5516907	1	31	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	EPS8L1	19	55072020	55087923	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	21	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	EPS8L2	11	694438	727727	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	29	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	EPS8L3	1	109750080	109764027	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	EPSTI1	13	42886388	42992271	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	13	2	FALSE	HETLOSS	PASS
659_bTo_pair	EPX	17	58192737	58205174	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EPYC	12	90963679	91005026	FALSE	794	-0.258431968401282	46	85301316	91178343	0.298322295679939	3	NA	0.298322295679939	3	NA	5877027	NA	19	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	EQTN	9	27284659	27297139	FALSE	585	-0.464842894155678	32	22447079	32572950	0.365165917639896	2	0	0.365165917639896	2	0	10125871	2	19	9	1	FALSE	CNLOH	PASS
659_bTo_pair	ERAL1	17	28854938	28861067	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	ERAP1	5	96760810	96808100	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	28	3	FALSE	HETLOSS	PASS
659_bTo_pair	ERAP2	5	96875939	96919716	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	ERAS	23	48826513	48830138	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	3	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ERBB2	17	39687914	39730426	FALSE	1027	0.830273505970342	75	39687945	39728696	0.364342740527346	10	NA	0.364342740527346	10	NA	40751	NA	3	49	2	TRUE	AMP	PASS
659_bTo_pair	ERBB3	12	56076799	56103505	FALSE	777	1.10495844194143	81	56076841	56103531	0.364342740527346	13	NA	0.364342740527346	13	NA	26690	NA	2	46	0	FALSE	AMP	PASS
659_bTo_pair	ERBB4	2	211375717	212538841	FALSE	172	2.10261238931185	105	211375709	211383569	0.364342740527346	29	NA	0.364342740527346	29	NA	7860	NA	1	59	9	TRUE	AMP	PASS
659_bTo_pair	ERBIN	5	65926475	66082549	FALSE	323	-0.645106866010582	25	58495036	67196614	0.365165917639896	1	0	0.365165917639896	1	0	8701578	1	31	31	1	FALSE	HETLOSS	PASS
659_bTo_pair	ERC1	12	990509	1495933	FALSE	738	0.753180639927267	74	896148	1083520	0.364342740527346	9	NA	0.364342740527346	9	NA	187372	NA	3	22	0	TRUE	INDETERMINATE	PASS
659_bTo_pair	ERC2	3	55508308	56468363	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	19	1	FALSE	HETLOSS	PASS
659_bTo_pair	ERCC1	19	45407333	45478828	FALSE	1184	1.38906344222519	87	45407180	45423935	0.364342740527346	16	NA	0.364342740527346	16	NA	16755	NA	2	28	1	TRUE	AMP	PASS
659_bTo_pair	ERCC2	19	45349837	45370918	TRUE	1182	1.51987020675154	90	45349324	45370684	0.364342740527346	18	NA	0.364342740527346	18	NA	21360	NA	2	34	5	FALSE	AMP	PASS
659_bTo_pair	ERCC3	2	127257290	127294176	TRUE	142	0.714184787191107	74	127252372	127294133	0.364342740527346	9	NA	0.364342740527346	9	NA	41761	NA	1	24	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	ERCC4	16	13920157	13952345	TRUE	957	1.67226150825901	96	13920289	13957422	0.364342740527346	21	NA	0.364342740527346	21	NA	37133	NA	1	47	0	FALSE	AMP	PASS
659_bTo_pair	ERCC5	13	102807146	102876001	TRUE	840	-0.335776033141145	43	102193037	102839809	0.192136715055622	3	NA	0.192136715055622	3	NA	646772	NA	9	45	1	TRUE	GAIN (many states)	PASS
659_bTo_pair	ERCC6	10	49455368	49539538	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	36	3	FALSE	CNLOH	PASS
659_bTo_pair	ERCC6L	23	72204657	72239047	FALSE	1317	0.217996879888221	62	71533297	76176924	0.364342740527346	5	NA	0.364342740527346	5	NA	4643627	NA	35	15	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ERCC6L2	9	95875701	96014571	FALSE	608	-0.541405085979946	27	95522076	99069752	1	2	1	1	2	1	3547676	1	31	27	6	FALSE	DIPLOID	PASS
659_bTo_pair	ERCC8	5	60873831	60945073	FALSE	323	-0.645106866010582	25	58495036	67196614	0.365165917639896	1	0	0.365165917639896	1	0	8701578	1	31	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	EREG	4	74365143	74388751	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	ERF	19	42247572	42255157	TRUE	1177	-0.671885212726332	22	41354916	42250573	0.291335969972972	1	0	0.291335969972972	1	0	895657	1	32	9	0	TRUE	HETLOSS	PASS
659_bTo_pair	ERFE	2	238158982	238168900	FALSE	190	-0.691419458816616	21	236392006	238848635	0.140309795179477	0	0	0.140309795179477	0	0	2456629	0	22	8	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ERG	21	38380027	38661780	FALSE	1229	1.46773288526501	90	38380178	38661682	0.364342740527346	17	NA	0.364342740527346	17	NA	281504	NA	2	31	0	FALSE	AMP	PASS
659_bTo_pair	ERG28	14	75649791	75661189	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	ERGIC1	5	172834275	172952685	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	ERGIC2	12	29337352	29381189	FALSE	759	-0.427669886187443	30	25503824	31088026	1	2	1	1	2	1	5584202	1	28	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	ERGIC3	20	35542021	35557634	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	ERH	14	69380123	69398627	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	ERI1	8	9002147	9116746	FALSE	514	1.73907509203007	97	8786036	9003110	0.364342740527346	22	NA	0.364342740527346	22	NA	217074	NA	2	9	1	TRUE	AMP	PASS
659_bTo_pair	ERI2	16	20780193	20900349	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	50	1	FALSE	DIPLOID	PASS
659_bTo_pair	ERI3	1	44221070	44355260	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	ERICH1	8	614746	738106	FALSE	510	-0.906181747703467	12	166288	7823395	0.365165917639896	1	0	0.365165917639896	1	0	7657107	1	48	11	2	FALSE	HETLOSS	PASS
659_bTo_pair	ERICH2	2	170783786	170798971	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	ERICH3	1	74568111	74673738	FALSE	25	-0.394411030612058	39	74026891	77942032	NA	2	NA	NA	2	NA	3915141	NA	22	25	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ERICH4	19	41443158	41444765	FALSE	1177	-0.671885212726332	22	41354916	42250573	0.291335969972972	1	0	0.291335969972972	1	0	895657	1	32	1	0	FALSE	HETLOSS	PASS
659_bTo_pair	ERICH5	8	98064311	98093610	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	6	0	FALSE	GAIN	PASS
659_bTo_pair	ERICH6	3	150659885	150703971	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	16	3	FALSE	GAIN	PASS
659_bTo_pair	ERICH6B	13	45534522	45615739	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	16	3	FALSE	HETLOSS	PASS
659_bTo_pair	ERLEC1	2	53787044	53818819	FALSE	110	-0.435434252584523	30	48441014	54599245	1	2	1	1	2	1	6158231	1	18	14	2	FALSE	DIPLOID	PASS
659_bTo_pair	ERLIN1	10	100150094	100188334	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	12	0	FALSE	CNLOH	PASS
659_bTo_pair	ERLIN2	8	37736601	37759101	FALSE	530	-0.960558661551373	11	37737954	37777957	0.289956079954009	0	0	0.289956079954009	0	0	40003	0	2	12	0	FALSE	HOMDEL	PASS
659_bTo_pair	ERMAP	1	42817088	42844993	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	12	4	FALSE	DIPLOID	PASS
659_bTo_pair	ERMARD	6	169751622	169781584	FALSE	449	-0.520973998932362	27	167374374	170584540	1	2	1	1	2	1	3210166	1	18	19	1	FALSE	DIPLOID	PASS
659_bTo_pair	ERMN	2	157318625	157327713	FALSE	149	-0.454179855872301	30	147845197	157628657	1	2	1	1	2	1	9783460	1	30	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ERMP1	9	5765076	5833117	FALSE	579	-0.757785700087963	19	5656721	7798588	0.365165917639896	1	0	0.365165917639896	1	0	2141867	1	11	27	0	FALSE	HETLOSS	PASS
659_bTo_pair	ERN1	17	64039142	64130819	FALSE	1066	-0.447707994366894	34	63941413	64859452	NA	2	NA	NA	2	NA	918039	NA	12	25	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ERN2	16	23690326	23713500	FALSE	960	-0.449512584299377	34	23658521	27234165	NA	2	NA	NA	2	NA	3575644	NA	16	23	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ERO1A	14	52639916	52695900	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	ERO1B	1	236215555	236281985	FALSE	82	-0.550278310688863	27	235196044	241494870	1	2	1	1	2	1	6298826	1	22	16	7	FALSE	DIPLOID	PASS
659_bTo_pair	ERP27	12	14914035	14939082	FALSE	753	-0.517160615058114	27	12726042	18242949	1	2	1	1	2	1	5516907	1	31	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	ERP29	12	112013316	112023451	FALSE	802	-0.463173510714366	34	111455064	112408626	NA	2	NA	NA	2	NA	953562	NA	12	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ERP44	9	99979179	100099040	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	ERRFI1	1	8004404	8026308	TRUE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	ERV3-1	7	64990809	65006743	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	ERVFRD-1	6	11102489	11111732	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ERVMER34-1	4	52722618	52751640	FALSE	283	-0.7726728361031	19	49038034	54241294	0.365165917639896	1	0	0.365165917639896	1	0	5203260	1	15	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	ERVV-1	19	53013921	53016122	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	ERVV-2	19	53044738	53051076	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	ERVW-1	7	92468380	92477986	FALSE	479	-0.448308050861149	30	87602941	92590330	1	2	1	1	2	1	4987389	1	30	7	3	FALSE	DIPLOID	PASS
659_bTo_pair	ESAM	11	124752583	124762290	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ESCO1	18	21529281	21600884	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	15	1	FALSE	GAIN	PASS
659_bTo_pair	ESCO2	8	27771949	27812640	TRUE	523	-1.08188475411826	8	27469296	29263060	0.342391532111247	0	0	0.342391532111247	0	0	1793764	0	18	17	0	FALSE	HOMDEL	RESCUE
659_bTo_pair	ESD	13	46771256	46797232	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ESF1	20	13714322	13784886	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	ESM1	5	54977864	55022671	FALSE	319	-0.764156631411702	19	50399919	56556187	0.365165917639896	1	0	0.365165917639896	1	0	6156268	1	28	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	ESPL1	12	53268299	53293643	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	40	0	FALSE	DIPLOID	PASS
659_bTo_pair	ESPN	1	6424776	6461367	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	18	1	FALSE	DIPLOID	PASS
659_bTo_pair	ESPNL	2	238100157	238133287	FALSE	190	-0.691419458816616	21	236392006	238848635	0.140309795179477	0	0	0.140309795179477	0	0	2456629	0	22	17	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ESR1	6	151656691	152129619	FALSE	439	2.32958881776228	110	151651774	152129335	0.364342740527346	34	NA	0.364342740527346	34	NA	477561	NA	2	60	11	FALSE	AMP	PASS
659_bTo_pair	ESR2	14	64084232	64338112	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	74	2	FALSE	DIPLOID	PASS
659_bTo_pair	ESRP1	8	94641074	94707466	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	17	2	FALSE	GAIN	PASS
659_bTo_pair	ESRP2	16	68229111	68238102	FALSE	979	-0.429457644119204	34	67645299	68698317	NA	2	NA	NA	2	NA	1053018	NA	33	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ESRRA	11	64305572	64316743	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	9	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	ESRRB	14	76310712	76501837	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	ESRRG	1	216503246	217137755	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	ESS2	22	19130279	19144684	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	16	1	FALSE	CNLOH	PASS
659_bTo_pair	ESX1	23	104250038	104254933	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	7	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ESYT1	12	56118250	56144671	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	35	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ESYT2	7	158730995	158830253	FALSE	509	-0.56054035608462	23	152759958	159144708	0.186356639256811	1	0	0.186356639256811	1	0	6384750	1	20	25	7	FALSE	HETLOSS	PASS
659_bTo_pair	ESYT3	3	138434586	138481686	FALSE	244	-0.465451876797886	34	136855703	138629155	NA	2	NA	NA	2	NA	1773452	NA	14	26	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ETAA1	2	67397319	67412089	TRUE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	14	2	FALSE	DIPLOID	PASS
659_bTo_pair	ETDA	23	135252061	135253583	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	1	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ETDB	23	135118955	135120526	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	1	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ETDC	23	135309480	135309659	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	1	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ETF1	5	138506095	138543300	FALSE	336	-0.752536733071469	19	135941639	138575278	0.365165917639896	1	0	0.365165917639896	1	0	2633639	1	24	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	ETFA	15	76215355	76311472	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	ETFB	19	51345169	51366418	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	ETFBKMT	12	31647160	31673114	FALSE	760	-0.171000692864655	50	31089058	38321207	0.218007130395584	4	2	0.218007130395584	4	2	7232149	2	15	6	0	FALSE	TETRAPLOID	PASS
659_bTo_pair	ETFDH	4	158672125	158709623	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	ETFRF1	12	25195216	25209645	FALSE	758	1.97385889137194	102	25200305	25255980	0.364342740527346	26	NA	0.364342740527346	26	NA	55675	NA	2	19	0	FALSE	AMP	PASS
659_bTo_pair	ETHE1	19	43506719	43527244	FALSE	1179	-0.582084941516902	26	42297317	43535595	NA	2	NA	NA	2	NA	1238278	NA	25	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ETNK1	12	22625075	22690665	FALSE	757	-0.490002350483383	34	21512373	25195063	NA	2	NA	NA	2	NA	3682690	NA	15	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ETNK2	1	204131062	204152003	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	ETNPPL	4	108742040	108763054	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	13	2	FALSE	DIPLOID	PASS
659_bTo_pair	ETS1	11	128458761	128587558	FALSE	733	1.22650714458615	84	128459018	128840166	0.364342740527346	14	NA	0.364342740527346	14	NA	381148	NA	3	29	2	FALSE	AMP	PASS
659_bTo_pair	ETS2	21	38805307	38824955	FALSE	1230	-0.572411047461507	26	38805300	41452836	NA	2	NA	NA	2	NA	2647536	NA	17	12	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ETV1	7	13891228	13991425	FALSE	457	2.01801916632027	103	13891325	13915126	0.364342740527346	27	11	0.364342740527346	27	11	23801	16	1	318	64	TRUE	AMP	PASS
659_bTo_pair	ETV2	19	35641745	35644871	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	ETV3	1	157121191	157138474	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	ETV3L	1	157092044	157099808	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	ETV4	17	43527844	43579620	FALSE	1043	1.82383847404052	100	43527815	43546340	0.364342740527346	23	NA	0.364342740527346	23	NA	18525	NA	2	54	1	FALSE	AMP	PASS
659_bTo_pair	ETV5	3	186046308	186110318	FALSE	262	1.79594791816506	98	186046360	186150151	0.364342740527346	23	NA	0.364342740527346	23	NA	103791	NA	2	71	1	FALSE	AMP	PASS
659_bTo_pair	ETV6	12	11649854	11895402	TRUE	748	0.115902835270215	57	10722867	11717834	0.334914946507217	5	2	0.334914946507217	5	2	994967	3	26	440	35	TRUE	AMP	PASS
659_bTo_pair	ETV7	6	36354091	36387800	FALSE	393	-0.47521086997284	30	35476361	36677919	1	2	1	1	2	1	1201558	1	21	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	EVA1A	2	75469302	75569722	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EVA1B	1	36322031	36324154	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	EVA1C	21	32412006	32515397	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	10	2	FALSE	DIPLOID	PASS
659_bTo_pair	EVC	4	5711197	5814305	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	24	6	FALSE	GAIN	PASS
659_bTo_pair	EVC2	4	5542772	5709548	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	27	2	FALSE	GAIN	PASS
659_bTo_pair	EVI2A	17	31317560	31321884	FALSE	1019	1.11370148874887	81	31090043	31387166	0.364342740527346	13	NA	0.364342740527346	13	NA	297123	NA	5	4	0	FALSE	AMP	PASS
659_bTo_pair	EVI2B	17	31303766	31314112	FALSE	1019	1.11370148874887	81	31090043	31387166	0.364342740527346	13	NA	0.364342740527346	13	NA	297123	NA	5	6	0	FALSE	AMP	PASS
659_bTo_pair	EVI5	1	92508696	92792404	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	23	0	FALSE	DIPLOID	PASS
659_bTo_pair	EVI5L	19	7830233	7864976	FALSE	1130	-0.690953718254595	21	7440128	7870576	0.140309795179477	0	0	0.140309795179477	0	0	430448	0	25	20	4	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	EVL	14	99971449	100144236	FALSE	876	-0.546199181806584	27	96039535	102050530	1	2	1	1	2	1	6010995	1	30	16	2	FALSE	DIPLOID	PASS
659_bTo_pair	EVPL	17	76004502	76027452	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	37	1	FALSE	DIPLOID	PASS
659_bTo_pair	EVPLL	17	18377662	18389647	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	9	0	FALSE	CNLOH	PASS
659_bTo_pair	EVX1	7	27242700	27250493	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	7	0	FALSE	GAIN	PASS
659_bTo_pair	EVX2	2	176077472	176083913	FALSE	153	-0.469039793655258	34	172736055	177217715	NA	2	NA	NA	2	NA	4481660	NA	28	7	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EWSR1	22	29268009	29300525	FALSE	1258	1.57338336560723	91	29268014	29310933	0.364342740527346	19	NA	0.364342740527346	19	NA	42919	NA	3	58	0	FALSE	AMP	PASS
659_bTo_pair	EXD1	15	41182725	41230743	FALSE	894	-0.874433234740196	13	41183964	41662415	0.365165917639896	1	0	0.365165917639896	1	0	478451	1	12	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	EXD2	14	69191511	69244020	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	EXD3	9	137306896	137423262	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	26	1	FALSE	HETLOSS	PASS
659_bTo_pair	EXO1	1	241847967	241895148	FALSE	84	-0.392646983169906	39	241532515	243426393	NA	2	NA	NA	2	NA	1893878	NA	10	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EXO5	1	40508741	40516556	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	EXOC1	4	55853616	55905034	FALSE	285	-0.676685623676823	22	55346376	64409389	0.291335969972972	1	0	0.291335969972972	1	0	9063013	1	23	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	EXOC1L	4	55819819	55837487	FALSE	285	-0.676685623676823	22	55346376	64409389	0.291335969972972	1	0	0.291335969972972	1	0	9063013	1	23	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	EXOC2	6	485133	693111	FALSE	366	-0.56930463675583	26	486737	3019480	NA	2	NA	NA	2	NA	2532743	NA	12	31	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EXOC3	5	443158	471937	FALSE	308	-0.255094097331532	44	92297	1246091	0.345317016959666	3	1	0.345317016959666	3	1	1153794	2	18	14	0	FALSE	GAIN	PASS
659_bTo_pair	EXOC3L1	16	67184366	67190204	FALSE	976	-0.467350965811123	34	67110264	67538977	NA	2	NA	NA	2	NA	428713	NA	24	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EXOC3L2	19	45212621	45245431	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	EXOC3L4	14	103100144	103110559	FALSE	880	-0.612786833130899	26	102922742	103500099	NA	2	NA	NA	2	NA	577357	NA	7	15	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EXOC4	7	133253073	134066589	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	EXOC5	14	57200507	57269008	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	EXOC6	10	92834713	93059493	FALSE	662	-0.410954559094016	36	89715119	94762760	0.365165917639896	2	0	0.365165917639896	2	0	5047641	2	33	24	1	FALSE	CNLOH	PASS
659_bTo_pair	EXOC6B	2	72175984	72826041	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	23	0	FALSE	DIPLOID	PASS
659_bTo_pair	EXOC7	17	76081017	76121576	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	26	0	FALSE	DIPLOID	PASS
659_bTo_pair	EXOC8	1	231332753	231337852	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	EXOG	3	38496127	38542161	FALSE	212	-0.750996176556328	19	38165958	40533064	0.365165917639896	1	0	0.365165917639896	1	0	2367106	1	26	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	EXOSC1	10	97436142	97446017	FALSE	664	-0.371799025630062	36	96955124	97864220	0.365165917639896	2	0	0.365165917639896	2	0	909096	2	23	8	1	FALSE	CNLOH	PASS
659_bTo_pair	EXOSC10	1	11066618	11099881	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	25	0	TRUE	DIPLOID	PASS
659_bTo_pair	EXOSC2	9	130693721	130704894	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	EXOSC3	9	37766978	37801437	FALSE	595	-0.209027397852981	47	37442028	67884575	0.365165917639896	3	1	0.365165917639896	3	1	30442547	2	35	14	1	FALSE	GAIN	PASS
659_bTo_pair	EXOSC4	8	144078626	144080647	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	EXOSC5	19	41386374	41397479	FALSE	1177	-0.671885212726332	22	41354916	42250573	0.291335969972972	1	0	0.291335969972972	1	0	895657	1	32	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	EXOSC6	16	70246778	70251930	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EXOSC7	3	44975241	45036066	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	EXOSC8	13	36998816	37009613	FALSE	830	-0.745621963362667	19	32401848	39788354	0.365165917639896	1	0	0.365165917639896	1	0	7386506	1	30	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	EXOSC9	4	121801317	121817021	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	EXPH5	11	108505431	108593738	FALSE	723	-0.542672588801529	29	108383083	111912852	NA	2	NA	NA	2	NA	3529769	NA	24	26	4	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EXT1	8	117794490	118111853	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	15	1	FALSE	GAIN	PASS
659_bTo_pair	EXT2	11	44095549	44245429	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	17	2	FALSE	DIPLOID	PASS
659_bTo_pair	EXTL1	1	26019884	26036464	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	EXTL2	1	100872372	100895998	FALSE	32	-0.441874489475641	34	100273343	107324874	NA	2	NA	NA	2	NA	7051531	NA	18	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	EXTL3	8	28600469	28755599	FALSE	523	-1.08188475411826	8	27469296	29263060	0.342391532111247	0	0	0.342391532111247	0	0	1793764	0	18	13	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	EYA1	8	71197433	71592025	FALSE	553	-0.248188717260806	46	68331252	73878866	0.298322295679939	3	NA	0.298322295679939	3	NA	5547614	NA	20	18	3	FALSE	GAIN (many states)	PASS
659_bTo_pair	EYA2	20	46894624	47188844	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	15	3	FALSE	DIPLOID	PASS
659_bTo_pair	EYA3	1	27970344	28088696	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	EYA4	6	133240598	133532120	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	20	1	FALSE	DIPLOID	PASS
659_bTo_pair	EYS	6	63719980	65707225	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	69	5	FALSE	DIPLOID	PASS
659_bTo_pair	EZH1	17	42700275	42745049	FALSE	1039	0.428165775469604	66	42700444	42745008	0.364342740527346	7	NA	0.364342740527346	7	NA	44564	NA	1	29	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	EZH2	7	148807383	148884321	TRUE	505	0.850081270536524	76	148802335	149005201	0.364342740527346	10	NA	0.364342740527346	10	NA	202866	NA	2	29	0	FALSE	AMP	PASS
659_bTo_pair	EZR	6	158765741	158819412	FALSE	442	-0.485239870020868	34	157293045	158767513	NA	2	NA	NA	2	NA	1474468	NA	11	19	5	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	F10	13	113122814	113149529	FALSE	844	-0.576217954819194	24	110150427	113263496	0.359751661895656	2	0	0.359751661895656	2	0	3113069	2	19	11	0	FALSE	CNLOH	PASS
659_bTo_pair	F11	4	186265945	186288806	FALSE	305	-0.853036814117495	12	184629284	186555336	0.365165917639896	1	0	0.365165917639896	1	0	1926052	1	22	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	F11R	1	160995211	161021348	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	10	2	FALSE	DIPLOID	PASS
659_bTo_pair	F12	5	177402140	177409576	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	F13A1	6	6144085	6321013	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	F13B	1	197038741	197067267	FALSE	60	-0.443336911293225	30	196228264	201209660	1	2	1	1	2	1	4981396	1	29	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	F2	11	46719180	46739506	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	F2R	5	76716043	76735781	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	F2RL1	5	76818933	76835315	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	F2RL2	5	76615482	76623434	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	F2RL3	19	16888860	16892606	FALSE	1154	-0.533888138892061	27	16361883	17271664	1	2	1	1	2	1	909781	1	23	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	F3	1	94529225	94541800	FALSE	30	1.31777451278068	87	94529209	94541705	0.364342740527346	15	NA	0.364342740527346	15	NA	12496	NA	1	9	1	FALSE	AMP	PASS
659_bTo_pair	F5	1	169514166	169586588	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	39	4	FALSE	DIPLOID	PASS
659_bTo_pair	F7	13	113105788	113120681	FALSE	844	-0.576217954819194	24	110150427	113263496	0.359751661895656	2	0	0.359751661895656	2	0	3113069	2	19	11	0	FALSE	CNLOH	PASS
659_bTo_pair	F8	23	154835788	155026940	FALSE	1341	-0.0231097163941018	55	154552015	155545250	0.328696605851359	4	NA	0.328696605851359	4	NA	993235	NA	23	42	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	F9	23	139530758	139563458	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	10	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	FA2H	16	74712955	74774831	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	10	2	FALSE	DIPLOID	PASS
659_bTo_pair	FAAH	1	46394265	46413848	FALSE	16	-0.485631979032023	30	46175602	48453048	1	2	1	1	2	1	2277446	1	32	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAAH2	23	57286706	57489196	FALSE	1303	0.0232492223836125	56	53426353	57488811	0.365165917639896	4	NA	0.365165917639896	4	NA	4062458	NA	32	12	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	FAAP100	17	81539885	81553961	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAAP20	1	2184461	2212720	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAAP24	19	32972209	32978222	FALSE	1165	-0.570153591761829	23	29923697	33225768	0.186356639256811	1	0	0.186356639256811	1	0	3302071	1	18	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	FABP1	2	88122982	88128116	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	FABP12	8	81524981	81531378	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	4	0	FALSE	GAIN	PASS
659_bTo_pair	FABP2	4	119317250	119322390	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	FABP3	1	31365625	31376850	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	FABP4	8	81478419	81483263	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	4	0	FALSE	GAIN	PASS
659_bTo_pair	FABP5	8	81280363	81284777	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	4	0	FALSE	GAIN	PASS
659_bTo_pair	FABP6	5	160187367	160238735	FALSE	353	-0.698571741790457	22	157138801	161546576	0.291335969972972	1	0	0.291335969972972	1	0	4407775	1	29	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	FABP7	6	122779475	122784074	FALSE	421	-0.534093125771784	29	117482879	126348569	NA	2	NA	NA	2	NA	8865690	NA	29	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FABP9	8	81458341	81461579	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	4	0	FALSE	GAIN	PASS
659_bTo_pair	FADD	11	70203163	70207390	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	4	0	FALSE	GAIN	PASS
659_bTo_pair	FADS1	11	61799625	61829318	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	16	0	FALSE	GAIN	PASS
659_bTo_pair	FADS2	11	61792980	61867354	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	32	1	FALSE	GAIN	PASS
659_bTo_pair	FADS3	11	61873519	61892051	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	12	1	FALSE	GAIN	PASS
659_bTo_pair	FADS6	17	74877299	74893781	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAF1	1	50437028	50960263	FALSE	17	-0.451021898823112	34	48472019	50857895	NA	2	NA	NA	2	NA	2385876	NA	6	20	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAF2	5	176447628	176510074	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAH	15	80152490	80186946	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	14	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	FAHD1	16	1826941	1840207	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	6	1	TRUE	HOMDEL	suppress_large_homdel
659_bTo_pair	FAHD2A	2	95402721	95416616	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAHD2B	2	97083583	97094882	FALSE	128	-0.534748403488722	29	96267335	97158701	NA	2	NA	NA	2	NA	891366	NA	17	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAIM	3	138608606	138633376	FALSE	244	-0.465451876797886	34	136855703	138629155	NA	2	NA	NA	2	NA	1773452	NA	14	7	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAIM2	12	49866896	49904217	FALSE	770	-0.500134310902258	34	49065087	50081631	NA	2	NA	NA	2	NA	1016544	NA	25	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAM102A	9	127940579	127980513	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM102B	1	108560089	108644900	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	11	2	FALSE	HETLOSS	PASS
659_bTo_pair	FAM104A	17	73207353	73236753	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM104B	23	55143102	55161310	FALSE	1303	0.0232492223836125	56	53426353	57488811	0.365165917639896	4	NA	0.365165917639896	4	NA	4062458	NA	32	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	FAM107A	3	58564117	58627610	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	FAM107B	10	14518557	14774897	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	7	0	FALSE	CNLOH	PASS
659_bTo_pair	FAM110A	20	833715	857463	FALSE	1195	-0.60512265366003	23	87765	1537211	0.186356639256811	1	0	0.186356639256811	1	0	1449446	1	33	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM110B	8	57994509	58204279	FALSE	548	-0.313898052002086	43	56168306	58659618	0.192136715055622	3	NA	0.192136715055622	3	NA	2491312	NA	10	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	FAM110C	2	38814	46870	FALSE	89	-0.524158836377085	27	41620	3847167	1	2	1	1	2	1	3805547	1	18	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM110D	1	26159020	26163962	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	FAM111A	11	59142748	59155039	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	9	1	FALSE	GAIN	PASS
659_bTo_pair	FAM111B	11	59107185	59127410	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	10	0	FALSE	GAIN	PASS
659_bTo_pair	FAM114A1	4	38867677	38945739	FALSE	280	-0.191477557443324	47	38829296	41740154	0.365165917639896	3	1	0.365165917639896	3	1	2910858	2	22	17	2	FALSE	GAIN	PASS
659_bTo_pair	FAM114A2	5	153990128	154038936	FALSE	350	-0.819899512516675	16	150444373	153997804	0.365165917639896	1	0	0.365165917639896	1	0	3553431	1	25	13	2	TRUE	HETLOSS	PASS
659_bTo_pair	FAM117A	17	49710332	49789180	FALSE	1053	-0.561829441831031	26	49646906	50626743	NA	2	NA	NA	2	NA	979837	NA	25	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAM117B	2	202635188	202769757	FALSE	166	-0.425780118113581	30	201288659	203854096	1	2	1	1	2	1	2565437	1	22	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM118A	22	45308968	45341955	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	11	3	FALSE	CNLOH	PASS
659_bTo_pair	FAM118B	11	126211414	126262986	FALSE	732	-0.497254377564454	34	125672754	127000522	NA	2	NA	NA	2	NA	1327768	NA	19	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAM120A	9	93451722	93566107	FALSE	606	-0.547644280946133	27	91214370	95094057	1	2	1	1	2	1	3879687	1	31	25	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM120AOS	9	93431441	93453592	FALSE	606	-0.547644280946133	27	91214370	95094057	1	2	1	1	2	1	3879687	1	31	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM120B	6	170290703	170407065	FALSE	449	-0.520973998932362	27	167374374	170584540	1	2	1	1	2	1	3210166	1	18	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM120C	23	54068324	54183281	FALSE	1303	0.0232492223836125	56	53426353	57488811	0.365165917639896	4	NA	0.365165917639896	4	NA	4062458	NA	32	23	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	FAM122A	9	68780034	68784608	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	FAM122B	23	134769566	134797232	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	10	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	FAM122C	23	134796395	134854835	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	11	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	FAM124A	13	51222334	51284241	FALSE	836	-0.444239733377228	32	50956423	72747004	0.365165917639896	2	0	0.365165917639896	2	0	21790581	2	40	11	0	FALSE	CNLOH	PASS
659_bTo_pair	FAM124B	2	224378698	224402085	FALSE	181	-0.697161202800517	22	222304006	224401731	0.291335969972972	1	0	0.291335969972972	1	0	2097725	1	12	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM126A	7	22889371	23014130	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	12	0	FALSE	GAIN	PASS
659_bTo_pair	FAM126B	2	200973718	201071671	FALSE	164	-0.381871160033202	39	198084145	201228955	NA	2	NA	NA	2	NA	3144810	NA	19	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAM129A	1	184790724	184974550	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	18	1	FALSE	DIPLOID	PASS
659_bTo_pair	FAM129B	9	127505339	127578989	FALSE	619	-0.820686000870706	14	125203036	127778681	0.365165917639896	1	0	0.365165917639896	1	0	2575645	1	23	17	3	FALSE	HETLOSS	PASS
659_bTo_pair	FAM129C	19	17523301	17553839	FALSE	1155	-0.249305971018279	46	17273895	17821522	0.298322295679939	3	NA	0.298322295679939	3	NA	547627	NA	25	18	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	FAM131A	3	184335926	184348421	FALSE	259	-0.260370931250901	44	183654025	185254015	0.345317016959666	3	1	0.345317016959666	3	1	1599990	2	31	9	0	FALSE	GAIN	PASS
659_bTo_pair	FAM131B	7	143353400	143362770	FALSE	503	-0.495530614890199	34	143026241	143572680	NA	2	NA	NA	2	NA	546439	NA	15	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAM131C	1	16057769	16073632	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	FAM133A	23	93674013	93712274	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	4	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	FAM133B	7	92560793	92590394	FALSE	479	-0.448308050861149	30	87602941	92590330	1	2	1	1	2	1	4987389	1	30	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM135A	6	70412941	70561174	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	30	3	FALSE	DIPLOID	PASS
659_bTo_pair	FAM135B	8	138130023	138496822	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	28	3	FALSE	DIPLOID	PASS
659_bTo_pair	FAM136A	2	70295975	70302090	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	4	2	FALSE	DIPLOID	PASS
659_bTo_pair	FAM13A	4	88725955	89111398	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	26	3	FALSE	DIPLOID	PASS
659_bTo_pair	FAM13B	5	137937960	138051961	FALSE	336	-0.752536733071469	19	135941639	138575278	0.365165917639896	1	0	0.365165917639896	1	0	2633639	1	24	25	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM13C	10	59246129	59363181	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	14	1	FALSE	CNLOH	PASS
659_bTo_pair	FAM149A	4	186104419	186172667	FALSE	305	-0.853036814117495	12	184629284	186555336	0.365165917639896	1	0	0.365165917639896	1	0	1926052	1	22	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM149B1	10	73168166	73244504	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	16	0	FALSE	CNLOH	PASS
659_bTo_pair	FAM151A	1	54609182	54623556	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM151B	5	80487969	80542563	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM153A	5	177707981	177783398	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM153B	5	176060689	176116015	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	14	2	FALSE	HETLOSS	PASS
659_bTo_pair	FAM153C	5	178006405	178055559	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM155A	13	107163510	107866735	FALSE	842	-0.555564796404534	26	103046205	109206791	NA	2	NA	NA	2	NA	6160586	NA	9	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAM155B	23	69505241	69532508	FALSE	1311	0.0481524733197309	56	68048478	70452009	0.365165917639896	4	NA	0.365165917639896	4	NA	2403531	NA	19	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	FAM160A1	4	151409216	151663632	FALSE	301	-0.768516841937588	19	151174942	151760928	0.365165917639896	1	0	0.365165917639896	1	0	585986	1	4	17	1	FALSE	HETLOSS	PASS
659_bTo_pair	FAM160A2	11	6211335	6234711	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM160B1	10	114821744	114899832	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	19	0	FALSE	CNLOH	PASS
659_bTo_pair	FAM160B2	8	22089159	22104898	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM161A	2	61824854	61854143	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM161B	14	73931501	73950414	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	FAM162A	3	122384176	122412334	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	5	1	FALSE	GAIN	PASS
659_bTo_pair	FAM162B	6	116752197	116765723	FALSE	417	-0.520434008170675	29	114058103	117272433	NA	2	NA	NA	2	NA	3214330	NA	20	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAM163A	1	179743163	179816198	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM163B	9	133578415	133586197	FALSE	627	-0.867007674319489	12	132986776	134157867	0.365165917639896	1	0	0.365165917639896	1	0	1171091	1	28	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM166A	9	137243584	137247770	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM166B	9	35561831	35563899	FALSE	590	0.518634267342274	67	35107891	35683151	0.364342740527346	7	2	0.364342740527346	7	2	575260	5	11	6	0	FALSE	AMP	PASS
659_bTo_pair	FAM167A	8	11421463	11475908	FALSE	516	-0.746159577374248	19	10611830	11564127	0.365165917639896	1	0	0.365165917639896	1	0	952297	1	9	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM167B	1	32247233	32248856	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM168A	11	73400487	73598189	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	7	1	FALSE	GAIN	PASS
659_bTo_pair	FAM168B	2	131047876	131093460	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM169A	5	74777574	74866951	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM169B	15	98437162	98547728	FALSE	931	-1.05463640239282	8	93072946	98485928	0.342391532111247	0	0	0.342391532111247	0	0	5412982	0	6	5	0	FALSE	HOMDEL	PASS
659_bTo_pair	FAM170A	5	119629559	119635822	FALSE	331	-0.706980197323045	20	112861366	122075379	0.365165917639896	1	0	0.365165917639896	1	0	9214013	1	31	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	FAM170B	10	49131154	49134008	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	5	0	FALSE	CNLOH	PASS
659_bTo_pair	FAM171A1	10	15211643	15371062	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	14	1	FALSE	CNLOH	PASS
659_bTo_pair	FAM171A2	17	44353215	44363875	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	12	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAM171B	2	186693971	186765965	FALSE	159	-0.50094907723407	34	185815441	189771912	NA	2	NA	NA	2	NA	3956471	NA	17	14	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAM172A	5	93618069	94111699	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM173A	16	720581	722601	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	FAM173B	5	10226330	10249897	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	5	1	FALSE	GAIN	PASS
659_bTo_pair	FAM174A	5	100535305	100586741	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM174B	15	92617443	92809884	FALSE	929	-0.700679172673924	22	90876261	92655591	0.291335969972972	1	0	0.291335969972972	1	0	1779330	1	13	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM177A1	14	35044907	35113130	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	FAM177B	1	222737207	222750805	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	4	2	FALSE	DIPLOID	PASS
659_bTo_pair	FAM178B	2	96875882	96986592	FALSE	128	-0.534748403488722	29	96267335	97158701	NA	2	NA	NA	2	NA	891366	NA	17	19	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAM180A	7	135728348	135748846	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM180B	11	47586693	47589194	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM181A	14	93918894	93929608	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM181B	11	82729941	82733864	FALSE	712	-0.188800010767045	48	77590086	86068715	0.365165917639896	3	NA	0.365165917639896	3	NA	8478629	NA	30	6	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	FAM183A	1	43145153	43156396	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM184A	6	118959763	119149387	FALSE	421	-0.534093125771784	29	117482879	126348569	NA	2	NA	NA	2	NA	8865690	NA	29	22	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAM184B	4	17629306	17781512	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	20	2	TRUE	GAIN	PASS
659_bTo_pair	FAM185A	7	102748971	102809225	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	FAM186A	12	50326230	50396622	FALSE	772	-0.61197679162419	26	50109466	51920864	NA	2	NA	NA	2	NA	1811398	NA	27	30	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAM186B	12	49582885	49605639	FALSE	770	-0.500134310902258	34	49065087	50081631	NA	2	NA	NA	2	NA	1016544	NA	25	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAM187A	17	44899712	44905390	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAM187B	19	35224800	35228729	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM189A1	15	29120254	29570723	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	17	3	FALSE	HETLOSS	PASS
659_bTo_pair	FAM189A2	9	69324567	69392558	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	FAM189B	1	155247205	155255483	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM192A	16	57152466	57186116	FALSE	971	-0.537344591536493	29	57069860	57923335	NA	2	NA	NA	2	NA	853475	NA	21	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAM193A	4	2536631	2732565	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	23	0	FALSE	GAIN	PASS
659_bTo_pair	FAM193B	5	177519788	177554541	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM198A	3	42979267	43060211	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	10	4	FALSE	HETLOSS	PASS
659_bTo_pair	FAM198B	4	158124474	158173318	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM199X	23	104166620	104195902	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	8	0	FALSE	AMP (many states)	PASS
659_bTo_pair	FAM19A1	3	68004216	68545625	FALSE	228	-0.860828429618822	13	64010871	69385924	0.365165917639896	1	0	0.365165917639896	1	0	5375053	1	16	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM19A2	12	61708259	62279150	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM19A3	1	112720419	112727235	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM19A4	3	68731766	68953297	FALSE	228	-0.860828429618822	13	64010871	69385924	0.365165917639896	1	0	0.365165917639896	1	0	5375053	1	16	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	FAM19A5	22	48489460	48850912	FALSE	1271	-0.350898193716427	41	45922979	50285791	0.284729887459054	3	0	0.284729887459054	3	0	4362812	3	30	5	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	FAM200A	7	99546308	99558536	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM200B	4	15681662	15705565	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	11	0	FALSE	GAIN	PASS
659_bTo_pair	FAM204A	10	118297930	118342328	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	7	0	FALSE	CNLOH	PASS
659_bTo_pair	FAM205A	9	34723055	34729467	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	18	2	FALSE	CNLOH	PASS
659_bTo_pair	FAM205C	9	34889064	34895778	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	7	0	FALSE	CNLOH	PASS
659_bTo_pair	FAM206A	9	108934181	108950744	FALSE	613	-0.484018775274725	34	108869192	109119647	NA	2	NA	NA	2	NA	250455	NA	4	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAM207A	21	44940010	44976989	FALSE	1238	1.30994363670836	86	44886449	44943814	0.364342740527346	15	NA	0.364342740527346	15	NA	57365	NA	2	6	4	TRUE	AMP	PASS
659_bTo_pair	FAM208A	3	56620133	56683237	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	35	4	FALSE	HETLOSS	PASS
659_bTo_pair	FAM208B	10	5684838	5763740	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	38	5	FALSE	CNLOH	PASS
659_bTo_pair	FAM209A	20	56517187	56526142	FALSE	1221	-0.44936578355072	34	56249153	58715213	NA	2	NA	NA	2	NA	2466060	NA	27	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAM209B	20	56533246	56536520	FALSE	1221	-0.44936578355072	34	56249153	58715213	NA	2	NA	NA	2	NA	2466060	NA	27	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAM20A	17	68535113	68601389	FALSE	1072	0.1411640307242	60	68533460	68600598	0.364342740527346	5	NA	0.364342740527346	5	NA	67138	NA	2	15	1	FALSE	AMP (many states)	PASS
659_bTo_pair	FAM20B	1	179025804	179076562	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM20C	7	192969	260745	FALSE	450	-0.329551508654045	40	193185	2379492	0.308149309490068	3	1	0.308149309490068	3	1	2186307	2	26	14	0	FALSE	GAIN	PASS
659_bTo_pair	FAM210A	18	13663347	13726663	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	4	0	FALSE	GAIN	PASS
659_bTo_pair	FAM210B	20	56358915	56368663	FALSE	1221	-0.44936578355072	34	56249153	58715213	NA	2	NA	NA	2	NA	2466060	NA	27	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAM214A	15	52581317	52709817	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM214B	9	35104112	35116341	FALSE	589	-0.372578422434124	39	35089175	35107712	NA	2	NA	NA	2	NA	18537	NA	3	10	1	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAM216A	12	110468364	110490385	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM216B	13	42781550	42791549	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM217A	6	4049434	4087344	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM217B	20	59933764	59948680	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM218A	4	164956948	164959122	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM219A	9	34398184	34458570	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	6	0	FALSE	CNLOH	PASS
659_bTo_pair	FAM219B	15	74899987	74907121	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM220A	7	6329409	6348981	FALSE	456	-0.240618790532325	45	6028682	12688782	0.279823559258657	3	0	0.279823559258657	3	0	6660100	3	32	3	2	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	FAM221A	7	23680130	23703249	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	7	1	FALSE	GAIN	PASS
659_bTo_pair	FAM221B	9	35816391	35828747	FALSE	591	0.73474920581053	74	35684233	36036976	0.364342740527346	9	NA	0.364342740527346	9	NA	352743	NA	17	8	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	FAM222A	12	109714228	109770507	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM222B	17	28755978	28855232	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM227A	22	38578120	38656629	FALSE	1265	-0.53141020507802	29	38041114	39152464	NA	2	NA	NA	2	NA	1111350	NA	31	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAM227B	15	49326962	49620931	FALSE	904	-0.666047806656427	20	44736698	49422632	0.365165917639896	1	0	0.365165917639896	1	0	4685934	1	30	42	4	TRUE	HETLOSS	PASS
659_bTo_pair	FAM228A	2	24175069	24200849	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAM228B	2	24076526	24169640	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	19	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAM229A	1	32361270	32364278	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM229B	6	112087599	112102790	FALSE	415	-0.653130566834058	22	112072832	113860548	0.291335969972972	1	0	0.291335969972972	1	0	1787716	1	6	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM234A	16	234546	268971	FALSE	934	-0.725703643263354	19	47610	287124	0.365165917639896	1	0	0.365165917639896	1	0	239514	1	16	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM234B	12	13044284	13142521	FALSE	753	-0.517160615058114	27	12726042	18242949	1	2	1	1	2	1	5516907	1	31	24	4	FALSE	DIPLOID	PASS
659_bTo_pair	FAM236C	23	72912615	72913401	FALSE	1317	0.217996879888221	62	71533297	76176924	0.364342740527346	5	NA	0.364342740527346	5	NA	4643627	NA	35	1	0	FALSE	AMP (many states)	PASS
659_bTo_pair	FAM237A	2	206642412	206649011	FALSE	168	-0.499602545595775	30	203936898	208231285	1	2	1	1	2	1	4294387	1	25	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM240A	3	46612435	46626543	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM241A	4	112145397	112195256	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM241B	10	69630251	69633599	FALSE	651	-0.523280686314431	28	68722553	70760843	0.351300687168522	2	0	0.351300687168522	2	0	2038290	2	27	3	0	FALSE	CNLOH	PASS
659_bTo_pair	FAM24A	10	122910701	122913111	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	2	0	FALSE	CNLOH	PASS
659_bTo_pair	FAM24B	10	122849078	122879641	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	2	0	FALSE	CNLOH	PASS
659_bTo_pair	FAM25A	10	87020306	87024730	FALSE	656	-0.313191165123093	43	86936767	87862427	0.192136715055622	3	NA	0.192136715055622	3	NA	925660	NA	12	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	FAM25C	10	47995355	47999791	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	3	0	FALSE	CNLOH	PASS
659_bTo_pair	FAM25G	10	47487219	47491693	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	1	0	FALSE	CNLOH	PASS
659_bTo_pair	FAM32A	19	16185380	16192046	FALSE	1152	-0.702482358931041	22	15914366	16234459	0.291335969972972	1	0	0.291335969972972	1	0	320093	1	8	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM3A	23	154506159	154516242	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	9	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	FAM3B	21	41304212	41357431	FALSE	1230	-0.572411047461507	26	38805300	41452836	NA	2	NA	NA	2	NA	2647536	NA	17	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAM3C	7	121348851	121396364	FALSE	490	-0.576498321273708	26	116888215	124790543	NA	2	NA	NA	2	NA	7902328	NA	33	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAM3D	3	58633946	58666848	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM43A	3	194686544	194689037	FALSE	269	-0.263219948753545	44	189957970	195888442	0.345317016959666	3	1	0.345317016959666	3	1	5930472	2	31	6	1	FALSE	GAIN	PASS
659_bTo_pair	FAM43B	1	20552439	20555010	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM45A	10	119104086	119137984	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	9	0	FALSE	CNLOH	PASS
659_bTo_pair	FAM47A	23	34129756	34132314	FALSE	1283	0.969154799392592	78	34129927	35802579	0.364342740527346	11	NA	0.364342740527346	11	NA	1672652	NA	4	9	0	FALSE	AMP	PASS
659_bTo_pair	FAM47B	23	34942796	34944915	FALSE	1283	0.969154799392592	78	34129927	35802579	0.364342740527346	11	NA	0.364342740527346	11	NA	1672652	NA	4	8	0	FALSE	AMP	PASS
659_bTo_pair	FAM47C	23	37008397	37011666	FALSE	1285	0.80616134695852	75	36379429	37572383	0.364342740527346	10	NA	0.364342740527346	10	NA	1192954	NA	5	12	0	FALSE	AMP	PASS
659_bTo_pair	FAM47E	4	76214040	76283780	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM47E-STBD1	4	76251721	76311129	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM49A	2	16549459	16666331	FALSE	93	-0.378491391859888	39	15947306	17745967	NA	2	NA	NA	2	NA	1798661	NA	4	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAM49B	8	129839593	130017129	FALSE	565	-0.282741903777565	44	129748604	134610527	0.345317016959666	3	1	0.345317016959666	3	1	4861923	2	18	11	0	FALSE	GAIN	PASS
659_bTo_pair	FAM50A	23	154444126	154450654	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	11	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	FAM50B	6	3849373	3851320	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM53A	4	1617915	1684302	FALSE	272	-0.300029378244858	40	85877	1745020	0.308149309490068	3	1	0.308149309490068	3	1	1659143	2	29	9	0	FALSE	GAIN	PASS
659_bTo_pair	FAM53B	10	124619292	124744269	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	8	0	FALSE	CNLOH	PASS
659_bTo_pair	FAM53C	5	138331935	138349729	FALSE	336	-0.752536733071469	19	135941639	138575278	0.365165917639896	1	0	0.365165917639896	1	0	2633639	1	24	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM57A	17	732412	742972	FALSE	996	-0.883704003468192	13	148164	1298296	0.365165917639896	1	0	0.365165917639896	1	0	1150132	1	14	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM57B	16	30024427	30052978	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM69A	1	92832737	92961522	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM69B	9	136712570	136724050	FALSE	631	-1.04738377038343	8	136673897	136866235	0.342391532111247	0	0	0.342391532111247	0	0	192338	0	15	8	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	FAM69C	18	74434099	74457944	FALSE	1111	-0.872352968035647	12	63331800	74584528	0.365165917639896	1	0	0.365165917639896	1	0	11252728	1	31	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	FAM71A	1	212624474	212626778	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	FAM71B	5	157161846	157166264	FALSE	353	-0.698571741790457	22	157138801	161546576	0.291335969972972	1	0	0.291335969972972	1	0	4407775	1	29	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM71C	12	99647753	99650046	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM71D	14	67189393	67228550	FALSE	862	-0.496151350288089	31	65561584	67816009	1	2	1	1	2	1	2254425	1	17	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	FAM71E1	19	50466785	50476753	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM71E2	19	55354908	55363260	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	15	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	FAM71F1	7	128709061	128731743	FALSE	492	-0.463656181520944	30	126439208	129166764	1	2	1	1	2	1	2727556	1	27	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM71F2	7	128672288	128687872	FALSE	492	-0.463656181520944	30	126439208	129166764	1	2	1	1	2	1	2727556	1	27	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM72A	1	206186179	206204414	FALSE	69	-0.48847123055109	34	205798087	206732058	NA	2	NA	NA	2	NA	933971	NA	14	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAM72B	1	121167646	121185539	FALSE	44	-0.0508975396039555	55	119911615	146019534	0.328696605851359	4	NA	0.328696605851359	4	NA	26107919	NA	33	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	FAM72C	1	143955364	143971965	FALSE	44	-0.0508975396039555	55	119911615	146019534	0.328696605851359	4	NA	0.328696605851359	4	NA	26107919	NA	33	1	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	FAM72D	1	145096000	145112696	FALSE	44	-0.0508975396039555	55	119911615	146019534	0.328696605851359	4	NA	0.328696605851359	4	NA	26107919	NA	33	2	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	FAM76A	1	27725979	27763122	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM76B	11	95768942	95790409	FALSE	717	-0.427991611956568	34	94512673	100992623	NA	2	NA	NA	2	NA	6479950	NA	19	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAM78A	9	131258076	131276547	FALSE	624	0.866929583397445	76	131120300	131261070	0.364342740527346	10	NA	0.364342740527346	10	NA	140770	NA	3	5	0	TRUE	AMP	PASS
659_bTo_pair	FAM78B	1	166057426	166166969	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM81A	15	59372693	59523549	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	FAM81B	5	95391344	95450454	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM83A	8	123178960	123210079	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	10	0	FALSE	GAIN	PASS
659_bTo_pair	FAM83B	6	54846771	54942022	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM83C	20	35285731	35292401	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	11	2	FALSE	DIPLOID	PASS
659_bTo_pair	FAM83D	20	38926312	38953106	FALSE	1205	-0.619744376635615	23	37518926	41023791	0.186356639256811	1	0	0.186356639256811	1	0	3504865	1	19	8	3	FALSE	HETLOSS	PASS
659_bTo_pair	FAM83E	19	48600810	48614854	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM83F	22	39994949	40043529	FALSE	1267	-0.448885551917151	34	39313004	41087696	NA	2	NA	NA	2	NA	1774692	NA	24	8	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAM83G	17	18968789	19004804	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	17	0	FALSE	CNLOH	PASS
659_bTo_pair	FAM83H	8	143723933	143733801	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	FAM84A	2	14632686	14650814	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM84B	8	126552442	126558393	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	4	0	FALSE	GAIN	PASS
659_bTo_pair	FAM86B1	8	12182096	12194133	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	5	4	FALSE	HETLOSS	PASS
659_bTo_pair	FAM86B2	8	12425614	12436343	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	5	4	FALSE	HETLOSS	PASS
659_bTo_pair	FAM86C1	11	71787510	71801236	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	6	1	FALSE	GAIN	PASS
659_bTo_pair	FAM89A	1	231018958	231040246	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	FAM89B	11	65572349	65574198	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	4	0	FALSE	GAIN	PASS
659_bTo_pair	FAM8A1	6	17600355	17611719	FALSE	370	-0.377368469329801	39	15246548	20212233	NA	2	NA	NA	2	NA	4965685	NA	18	7	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAM90A1	12	8221260	8227618	FALSE	746	1.67505738635428	96	8177236	8224755	0.364342740527346	21	NA	0.364342740527346	21	NA	47519	NA	2	7	1	FALSE	AMP	PASS
659_bTo_pair	FAM91A1	8	123768456	123815452	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	24	0	FALSE	GAIN	PASS
659_bTo_pair	FAM92A	8	93698561	93731527	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	9	1	FALSE	GAIN	PASS
659_bTo_pair	FAM92B	16	85098358	85112508	FALSE	987	-0.578642888038652	23	81999201	85806436	0.186356639256811	1	0	0.186356639256811	1	0	3807235	1	31	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	FAM95C	9	38540569	38577207	FALSE	595	-0.209027397852981	47	37442028	67884575	0.365165917639896	3	1	0.365165917639896	3	1	30442547	2	35	3	1	FALSE	GAIN	PASS
659_bTo_pair	FAM98A	2	33583658	33599382	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAM98B	15	38454127	38487710	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAM98C	19	38403135	38409088	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	FAM9A	23	8790795	8801383	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	9	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	FAM9B	23	9024232	9164639	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	7	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	FAM9C	23	13035618	13044682	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	6	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	FAN1	15	30903852	30943108	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	FANCA	16	89737549	89816657	TRUE	992	0.810685833158073	75	89737762	89816599	0.364342740527346	10	NA	0.364342740527346	10	NA	78837	NA	2	56	0	FALSE	AMP	PASS
659_bTo_pair	FANCB	23	14835961	14873069	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	15	1	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	FANCC	9	95099054	95426796	TRUE	607	1.02174252972905	79	95099042	95517036	0.364342740527346	12	6	0.364342740527346	12	6	417994	6	2	48	8	FALSE	AMP	PASS
659_bTo_pair	FANCD2	3	10026414	10101930	TRUE	198	0.122401387291047	59	10021483	10178045	0.308533751035793	5	NA	0.308533751035793	5	NA	156562	NA	5	60	2	FALSE	AMP (many states)	PASS
659_bTo_pair	FANCD2OS	3	10081317	10108231	FALSE	198	0.122401387291047	59	10021483	10178045	0.308533751035793	5	NA	0.308533751035793	5	NA	156562	NA	5	22	0	FALSE	AMP (many states)	PASS
659_bTo_pair	FANCE	6	35452356	35467103	FALSE	392	-0.183129995366178	48	35241630	35475885	0.365165917639896	3	NA	0.365165917639896	3	NA	234255	NA	7	15	3	FALSE	GAIN (many states)	PASS
659_bTo_pair	FANCF	11	22622890	22625841	FALSE	688	2.07774434391802	105	22377723	22625852	0.364342740527346	28	NA	0.364342740527346	28	NA	248129	NA	3	10	2	FALSE	AMP	PASS
659_bTo_pair	FANCG	9	35073835	35080016	FALSE	588	1.70856536356961	97	35073963	35079969	0.364342740527346	21	NA	0.364342740527346	21	NA	6006	NA	1	19	1	FALSE	AMP	PASS
659_bTo_pair	FANCI	15	89243949	89317261	FALSE	924	0.594114121962222	71	89244010	89317364	0.364342740527346	8	NA	0.364342740527346	8	NA	73354	NA	2	44	8	FALSE	INDETERMINATE	PASS
659_bTo_pair	FANCL	2	58159243	58241372	FALSE	113	1.59324928632298	93	58159398	58164435	0.364342740527346	19	NA	0.364342740527346	19	NA	5037	NA	2	53	5	TRUE	AMP	PASS
659_bTo_pair	FANCM	14	45135940	45200890	FALSE	859	2.02661010881559	104	45136101	45200485	0.364342740527346	27	NA	0.364342740527346	27	NA	64384	NA	1	57	0	FALSE	AMP	PASS
659_bTo_pair	FANK1	10	125896539	126009592	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	11	1	FALSE	CNLOH	PASS
659_bTo_pair	FAP	2	162170684	162245151	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	26	3	FALSE	DIPLOID	PASS
659_bTo_pair	FAR1	11	13668670	13732346	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	FAR2	12	29149103	29340980	FALSE	759	-0.427669886187443	30	25503824	31088026	1	2	1	1	2	1	5584202	1	28	11	2	FALSE	DIPLOID	PASS
659_bTo_pair	FARP1	13	98142562	98455176	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	35	3	FALSE	CNLOH	PASS
659_bTo_pair	FARP2	2	241356243	241494841	FALSE	194	-0.588828356865968	23	240025214	241817025	0.186356639256811	1	0	0.186356639256811	1	0	1791811	1	34	30	1	FALSE	HETLOSS	PASS
659_bTo_pair	FARS2	6	5261044	5829192	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	FARSA	19	12922479	12934037	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	FARSB	2	222570536	222656337	FALSE	181	-0.697161202800517	22	222304006	224401731	0.291335969972972	1	0	0.291335969972972	1	0	2097725	1	12	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAS	10	88990582	89015785	TRUE	659	1.81713920065073	99	88954971	89029659	0.364342740527346	23	6	0.364342740527346	23	6	74688	17	3	23	5	FALSE	AMP	PASS
659_bTo_pair	FASLG	1	172659018	172666874	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	FASN	17	82078333	82098332	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	49	3	FALSE	DIPLOID	PASS
659_bTo_pair	FASTK	7	151076593	151080866	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	FASTKD1	2	169529749	169573875	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	18	2	FALSE	DIPLOID	PASS
659_bTo_pair	FASTKD2	2	206765357	206792509	FALSE	168	-0.499602545595775	30	203936898	208231285	1	2	1	1	2	1	4294387	1	25	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	FASTKD3	5	7859159	7869037	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	11	0	FALSE	GAIN	PASS
659_bTo_pair	FASTKD5	20	3146519	3159897	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	FAT1	4	186587783	186726722	TRUE	306	-0.0917625592559286	53	186582863	186731793	0.273255132087987	4	NA	0.273255132087987	4	NA	148930	NA	1	83	13	FALSE	GAIN (many states)	PASS
659_bTo_pair	FAT2	5	151504093	151568944	FALSE	350	-0.819899512516675	16	150444373	153997804	0.365165917639896	1	0	0.365165917639896	1	0	3553431	1	25	63	2	FALSE	HETLOSS	PASS
659_bTo_pair	FAT3	11	92352096	92896470	FALSE	715	-0.44311716102168	34	90214063	94410681	NA	2	NA	NA	2	NA	4196618	NA	16	66	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAT4	4	125316399	125492932	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	66	2	FALSE	DIPLOID	PASS
659_bTo_pair	FATE1	23	151716035	151723194	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	5	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	FAU	11	65120628	65122473	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	5	0	FALSE	GAIN	PASS
659_bTo_pair	FAXC	6	99271169	99350062	FALSE	411	-0.455063723695114	34	95586870	106069771	NA	2	NA	NA	2	NA	10482901	NA	27	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FAXDC2	5	154818491	154859252	FALSE	351	-0.617975601907695	26	154002251	157057925	NA	2	NA	NA	2	NA	3055674	NA	15	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FBF1	17	75909574	75941140	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	30	2	FALSE	DIPLOID	PASS
659_bTo_pair	FBH1	10	5890203	5937594	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	26	3	FALSE	CNLOH	PASS
659_bTo_pair	FBL	19	39834458	39846414	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	10	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	FBLIM1	1	15756607	15786594	FALSE	6	-0.41295085321191	39	13779356	15847467	NA	2	NA	NA	2	NA	2068111	NA	18	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FBLL1	5	168529116	168530634	FALSE	356	-0.773912908266316	17	162095550	171298806	0.365165917639896	1	0	0.365165917639896	1	0	9203256	1	21	4	2	FALSE	HETLOSS	PASS
659_bTo_pair	FBLN1	22	45502238	45601135	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	21	0	FALSE	CNLOH	PASS
659_bTo_pair	FBLN2	3	13549131	13638422	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	23	1	FALSE	HETLOSS	PASS
659_bTo_pair	FBLN5	14	91869412	91947987	FALSE	870	-0.471399657488227	30	81180359	92000019	1	2	1	1	2	1	10819660	1	29	11	2	FALSE	DIPLOID	PASS
659_bTo_pair	FBLN7	2	112138385	112188216	FALSE	138	-0.423459519967032	34	112060069	113201423	NA	2	NA	NA	2	NA	1141354	NA	21	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FBN1	15	48408306	48645849	FALSE	904	-0.666047806656427	20	44736698	49422632	0.365165917639896	1	0	0.365165917639896	1	0	4685934	1	30	67	1	FALSE	HETLOSS	PASS
659_bTo_pair	FBN2	5	128257909	128659185	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	69	0	FALSE	HETLOSS	PASS
659_bTo_pair	FBN3	19	8065402	8149846	FALSE	1132	-0.583194501817822	26	7916513	8843246	NA	2	NA	NA	2	NA	926733	NA	25	68	9	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FBP1	9	94603133	94640249	FALSE	606	-0.547644280946133	27	91214370	95094057	1	2	1	1	2	1	3879687	1	31	8	4	FALSE	DIPLOID	PASS
659_bTo_pair	FBP2	9	94558720	94593793	FALSE	606	-0.547644280946133	27	91214370	95094057	1	2	1	1	2	1	3879687	1	31	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	FBRS	16	30658431	30670814	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	FBRSL1	12	132489551	132585188	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	24	7	FALSE	DIPLOID	PASS
659_bTo_pair	FBXL12	19	9810267	9827816	FALSE	1136	-0.657304673205362	21	8981156	10119920	0.140309795179477	0	0	0.140309795179477	0	0	1138764	0	32	6	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	FBXL13	7	102813230	103074843	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	28	3	FALSE	DIPLOID	PASS
659_bTo_pair	FBXL14	12	1565993	1594165	FALSE	739	-0.369471841682825	39	1104785	3873202	NA	2	NA	NA	2	NA	2768417	NA	20	6	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FBXL15	10	102419189	102423136	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	5	0	FALSE	CNLOH	PASS
659_bTo_pair	FBXL16	16	692498	705829	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	8	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	FBXL17	5	107859035	108382098	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	FBXL18	7	5431335	5513798	FALSE	453	-0.32600279290147	42	3619174	5500988	0.189552622934988	3	0	0.189552622934988	3	0	1881814	3	12	14	4	TRUE	CNLOH & GAIN	PASS
659_bTo_pair	FBXL19	16	30923055	30948783	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	FBXL2	3	33277025	33403662	FALSE	209	-0.637968449787088	26	31990360	37328493	NA	2	NA	NA	2	NA	5338133	NA	26	24	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FBXL20	17	39252644	39402523	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	15	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	FBXL22	15	63597353	63602428	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	FBXL3	13	76992598	77027195	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	13	2	FALSE	CNLOH	PASS
659_bTo_pair	FBXL4	6	98868538	98948006	FALSE	411	-0.455063723695114	34	95586870	106069771	NA	2	NA	NA	2	NA	10482901	NA	27	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FBXL5	4	15604539	15681679	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	14	0	FALSE	GAIN	PASS
659_bTo_pair	FBXL6	8	144355431	144359376	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	FBXL7	5	15500196	15939795	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	8	1	FALSE	GAIN	PASS
659_bTo_pair	FBXL8	16	67159931	67164570	FALSE	976	-0.467350965811123	34	67110264	67538977	NA	2	NA	NA	2	NA	428713	NA	24	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FBXO10	9	37510892	37576349	FALSE	595	-0.209027397852981	47	37442028	67884575	0.365165917639896	3	1	0.365165917639896	3	1	30442547	2	35	18	0	FALSE	GAIN	PASS
659_bTo_pair	FBXO11	2	47789316	47905793	TRUE	109	0.265429574535633	63	47340240	48375433	0.364342740527346	6	NA	0.364342740527346	6	NA	1035193	NA	6	65	1	FALSE	AMP (many states)	PASS
659_bTo_pair	FBXO15	18	74073353	74147865	FALSE	1111	-0.872352968035647	12	63331800	74584528	0.365165917639896	1	0	0.365165917639896	1	0	11252728	1	31	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	FBXO16	8	28348287	28490318	FALSE	523	-1.08188475411826	8	27469296	29263060	0.342391532111247	0	0	0.342391532111247	0	0	1793764	0	18	20	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	FBXO17	19	38941401	38975910	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	FBXO2	1	11637018	11655785	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	FBXO21	12	117141988	117190531	FALSE	808	-0.531025796359709	27	115966146	120090026	1	2	1	1	2	1	4123880	1	23	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	FBXO22	15	75903859	75942510	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	FBXO24	7	100583982	100601117	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	FBXO25	8	406428	477967	FALSE	510	-0.906181747703467	12	166288	7823395	0.365165917639896	1	0	0.365165917639896	1	0	7657107	1	48	10	2	FALSE	HETLOSS	PASS
659_bTo_pair	FBXO27	19	38990714	39032785	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	FBXO28	1	224114087	224162047	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	FBXO3	11	33740939	33774543	FALSE	692	-0.391103687852083	35	32583952	33774394	1	2	1	1	2	1	1190442	1	13	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	FBXO30	6	145793502	145814753	FALSE	431	-0.504239059693729	30	143136912	149638436	1	2	1	1	2	1	6501524	1	29	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	FBXO31	16	87326987	87392142	FALSE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	FBXO32	8	123497889	123541206	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	9	0	FALSE	GAIN	PASS
659_bTo_pair	FBXO33	14	39397669	39432500	FALSE	858	-0.388807455224718	39	37680254	45134449	NA	2	NA	NA	2	NA	7454195	NA	16	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FBXO34	14	55271303	55361918	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	FBXO36	2	229922302	230013109	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	FBXO38	5	148383935	148442836	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	23	3	FALSE	HETLOSS	PASS
659_bTo_pair	FBXO39	17	6776223	6797101	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	6	2	FALSE	HETLOSS	PASS
659_bTo_pair	FBXO4	5	41925254	41941743	FALSE	316	-0.143574193475256	49	39021030	43704252	0.365165917639896	3	1	0.365165917639896	3	1	4683222	2	28	8	0	FALSE	GAIN	PASS
659_bTo_pair	FBXO40	3	121593119	121630295	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	10	0	FALSE	GAIN	PASS
659_bTo_pair	FBXO41	2	73254682	73284431	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	FBXO42	1	16246839	16352454	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	FBXO43	8	100133360	100145800	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	10	0	FALSE	GAIN	PASS
659_bTo_pair	FBXO44	1	11654375	11663327	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	FBXO45	3	196568611	196589059	FALSE	271	-0.194588974812627	47	196198492	198169864	0.365165917639896	3	1	0.365165917639896	3	1	1971372	2	29	5	1	FALSE	GAIN	PASS
659_bTo_pair	FBXO46	19	45710629	45730904	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	FBXO47	17	38936432	38967402	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	10	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	FBXO48	2	68459419	68467258	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	FBXO5	6	152970519	152983579	FALSE	440	-0.500001062559341	30	152129628	156771069	1	2	1	1	2	1	4641441	1	14	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	FBXO6	1	11664124	11674354	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	FBXO7	22	32474676	32498829	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	12	0	FALSE	CNLOH	PASS
659_bTo_pair	FBXO8	4	174236658	174284264	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	FBXO9	6	53051991	53100873	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	FBXW10	17	18744024	18779349	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	19	2	FALSE	CNLOH	PASS
659_bTo_pair	FBXW11	5	171861549	172006873	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	FBXW12	3	48372219	48401259	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	FBXW2	9	120751978	120793412	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	FBXW4	10	101610664	101695295	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	10	0	FALSE	CNLOH	PASS
659_bTo_pair	FBXW5	9	136940435	136944696	FALSE	632	0.0629388935581104	59	136886484	136946542	0.308533751035793	5	NA	0.308533751035793	5	NA	60058	NA	3	10	1	FALSE	AMP (many states)	PASS
659_bTo_pair	FBXW7	4	152320544	152536063	TRUE	302	1.32370506556592	87	152320778	152541167	0.364342740527346	15	NA	0.364342740527346	15	NA	220389	NA	1	43	0	FALSE	AMP	PASS
659_bTo_pair	FBXW8	12	116910956	117031148	FALSE	808	-0.531025796359709	27	115966146	120090026	1	2	1	1	2	1	4123880	1	23	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	FBXW9	19	12688053	12696643	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	FCAMR	1	206957965	206970625	FALSE	71	-0.474443448890496	34	206798940	207049323	NA	2	NA	NA	2	NA	250383	NA	9	12	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FCAR	19	54874248	54890472	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	7	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	FCER1A	1	159289714	159308224	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	FCER1G	1	161215234	161220699	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	FCER2	19	7688758	7702146	FALSE	1130	-0.690953718254595	21	7440128	7870576	0.140309795179477	0	0	0.140309795179477	0	0	430448	0	25	12	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	FCF1	14	74713144	74738620	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	FCGBP	19	39863323	39934626	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	62	20	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	FCGR1A	1	149782671	149792518	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	FCGR1B	1	121087345	121096310	FALSE	44	-0.0508975396039555	55	119911615	146019534	0.328696605851359	4	NA	0.328696605851359	4	NA	26107919	NA	33	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	FCGR2A	1	161505430	161524013	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	FCGR2B	1	161663147	161678654	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	FCGR3A	1	161541759	161550737	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	FCGR3B	1	161623196	161631963	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	FCGRT	19	49506816	49526333	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	FCHO1	19	17747718	17788568	FALSE	1155	-0.249305971018279	46	17273895	17821522	0.298322295679939	3	NA	0.298322295679939	3	NA	547627	NA	25	28	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	FCHO2	5	72955981	73090522	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	26	0	FALSE	HETLOSS	PASS
659_bTo_pair	FCHSD1	5	141639302	141651419	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	24	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FCHSD2	11	72836745	73142261	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	20	0	FALSE	GAIN	PASS
659_bTo_pair	FCMR	1	206904386	206923247	FALSE	71	-0.474443448890496	34	206798940	207049323	NA	2	NA	NA	2	NA	250383	NA	9	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FCN1	9	134905890	134917963	FALSE	629	-0.955558414525678	9	134750808	136485014	0.291955377254426	0	0	0.291955377254426	0	0	1734206	0	30	10	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	FCN2	9	134880812	134887520	FALSE	629	-0.955558414525678	9	134750808	136485014	0.291955377254426	0	0	0.291955377254426	0	0	1734206	0	30	8	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	FCN3	1	27369112	27374824	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	FCRL1	1	157794403	157820105	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	FCRL2	1	157745733	157777132	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	FCRL3	1	157674321	157700857	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	20	1	FALSE	DIPLOID	PASS
659_bTo_pair	FCRL4	1	157573749	157598080	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	FCRL5	1	157513377	157552520	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	24	0	FALSE	DIPLOID	PASS
659_bTo_pair	FCRL6	1	159800511	159816251	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	FCRLA	1	161706972	161714352	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	9	2	FALSE	DIPLOID	PASS
659_bTo_pair	FCRLB	1	161721563	161728143	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	FDCSP	4	70226071	70235252	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	FDFT1	8	11795573	11839309	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	FDPS	1	155308748	155320666	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	FDX1	11	110429883	110464881	FALSE	723	-0.542672588801529	29	108383083	111912852	NA	2	NA	NA	2	NA	3529769	NA	24	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FDX2	19	10310045	10316015	FALSE	1139	-0.718742930681428	18	10252235	10467338	0.180216333675297	0	0	0.180216333675297	0	0	215103	0	13	5	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	FDXACB1	11	111874056	111881243	FALSE	723	-0.542672588801529	29	108383083	111912852	NA	2	NA	NA	2	NA	3529769	NA	24	10	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FDXR	17	74862497	74873031	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	14	6	FALSE	DIPLOID	PASS
659_bTo_pair	FECH	18	57548283	57586772	FALSE	1105	-0.785555027616249	16	52752095	58670682	0.365165917639896	1	0	0.365165917639896	1	0	5918587	1	19	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	FEM1A	19	4791681	4801273	FALSE	1124	-0.62008955817668	23	4168484	5151543	0.186356639256811	1	0	0.186356639256811	1	0	983059	1	28	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	FEM1B	15	68277803	68295865	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	FEM1C	5	115520908	115544894	FALSE	331	-0.706980197323045	20	112861366	122075379	0.365165917639896	1	0	0.365165917639896	1	0	9214013	1	31	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	FEN1	11	61792637	61797244	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	5	0	FALSE	GAIN	PASS
659_bTo_pair	FER	5	108747822	109196841	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	20	2	FALSE	HETLOSS	PASS
659_bTo_pair	FER1L5	2	96642737	96704887	FALSE	128	-0.534748403488722	29	96267335	97158701	NA	2	NA	NA	2	NA	891366	NA	17	51	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FER1L6	8	123851987	124120061	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	41	3	FALSE	GAIN	PASS
659_bTo_pair	FERD3L	7	19144782	19145421	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	3	0	FALSE	GAIN	PASS
659_bTo_pair	FERMT1	20	6074845	6123544	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	14	1	FALSE	HETLOSS	PASS
659_bTo_pair	FERMT2	14	52857268	52952435	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	FERMT3	11	64206678	64223886	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	15	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	FES	15	90883695	90895776	FALSE	929	-0.700679172673924	22	90876261	92655591	0.291335969972972	1	0	0.291335969972972	1	0	1779330	1	13	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	FETUB	3	186635969	186653141	FALSE	263	-0.396590537714608	39	186161612	186743777	NA	2	NA	NA	2	NA	582165	NA	9	9	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FEV	2	218981087	218985657	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	FEZ1	11	125442881	125592568	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	25	2	FALSE	DIPLOID	PASS
659_bTo_pair	FEZ2	2	36531805	36646087	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	FEZF1	7	122301394	122310691	FALSE	490	-0.576498321273708	26	116888215	124790543	NA	2	NA	NA	2	NA	7902328	NA	33	8	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FEZF2	3	62369681	62374324	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	FFAR1	19	35351552	35353862	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	FFAR2	19	35443907	35451767	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	FFAR3	19	35358460	35360485	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	4	2	FALSE	HETLOSS	PASS
659_bTo_pair	FFAR4	10	93566665	93604480	FALSE	662	-0.410954559094016	36	89715119	94762760	0.365165917639896	2	0	0.365165917639896	2	0	5047641	2	33	13	1	FALSE	CNLOH	PASS
659_bTo_pair	FGA	4	154583126	154590766	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	FGB	4	154562956	154571086	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	FGD1	23	54445454	54496166	FALSE	1303	0.0232492223836125	56	53426353	57488811	0.365165917639896	4	NA	0.365165917639896	4	NA	4062458	NA	32	23	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	FGD2	6	37005646	37029070	FALSE	395	-0.486049210799182	34	36704239	37028105	NA	2	NA	NA	2	NA	323866	NA	7	17	2	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	FGD3	9	92947451	93036236	FALSE	606	-0.547644280946133	27	91214370	95094057	1	2	1	1	2	1	3879687	1	31	18	4	FALSE	DIPLOID	PASS
659_bTo_pair	FGD4	12	32399529	32646050	FALSE	760	-0.171000692864655	50	31089058	38321207	0.218007130395584	4	2	0.218007130395584	4	2	7232149	2	15	21	0	FALSE	TETRAPLOID	PASS
659_bTo_pair	FGD5	3	14810853	14934565	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	29	0	FALSE	HETLOSS	PASS
659_bTo_pair	FGD6	12	95076749	95217482	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	28	2	FALSE	DIPLOID	PASS
659_bTo_pair	FGF1	5	142592178	142698070	FALSE	341	1.90992561940975	101	142592446	142770811	0.364342740527346	25	NA	0.364342740527346	25	NA	178365	NA	2	21	5	FALSE	AMP	PASS
659_bTo_pair	FGF10	5	44303544	44389706	FALSE	317	2.57605692182142	115	44300491	44809340	0.364342740527346	41	NA	0.364342740527346	41	NA	508849	NA	2	11	1	FALSE	AMP	PASS
659_bTo_pair	FGF11	17	7438273	7444937	FALSE	1000	-0.750226164220686	19	7324407	7655594	0.365165917639896	1	0	0.365165917639896	1	0	331187	1	31	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	FGF12	3	192139395	192767764	FALSE	269	-0.263219948753545	44	189957970	195888442	0.345317016959666	3	1	0.345317016959666	3	1	5930472	2	31	7	2	FALSE	GAIN	PASS
659_bTo_pair	FGF13	23	138614731	139222777	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	FGF14	13	101710804	102402457	FALSE	839	2.42009789917932	112	101710785	101916921	0.364342740527346	37	NA	0.364342740527346	37	NA	206136	NA	2	60	11	TRUE	AMP	PASS
659_bTo_pair	FGF16	23	77447405	77457278	FALSE	1318	1.90313360838225	101	76177725	77786243	0.364342740527346	25	NA	0.364342740527346	25	NA	1608518	NA	4	3	0	FALSE	AMP	PASS
659_bTo_pair	FGF17	8	22042398	22048809	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	FGF18	5	171419656	171457623	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	FGF19	11	69698232	69704642	FALSE	707	2.08552379511487	105	69641288	69819259	0.364342740527346	28	NA	0.364342740527346	28	NA	177971	NA	5	9	0	FALSE	AMP	PASS
659_bTo_pair	FGF2	4	122826708	122898236	FALSE	295	0.44988415470771	66	122620917	122892167	0.364342740527346	7	NA	0.364342740527346	7	NA	271250	NA	4	25	8	TRUE	INDETERMINATE	PASS
659_bTo_pair	FGF20	8	16992169	17002181	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	FGF21	19	48755559	48758333	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	FGF22	19	639879	644371	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	3	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	FGF23	12	4368227	4379728	FALSE	740	2.34844226201143	111	4270040	4445757	0.364342740527346	35	NA	0.364342740527346	35	NA	175717	NA	5	14	1	FALSE	AMP	PASS
659_bTo_pair	FGF3	11	69809969	69819024	FALSE	707	2.08552379511487	105	69641288	69819259	0.364342740527346	28	NA	0.364342740527346	28	NA	177971	NA	5	6	0	FALSE	AMP	PASS
659_bTo_pair	FGF4	11	69771016	69775403	FALSE	707	2.08552379511487	105	69641288	69819259	0.364342740527346	28	NA	0.364342740527346	28	NA	177971	NA	5	14	1	FALSE	AMP	PASS
659_bTo_pair	FGF5	4	80266599	80336680	FALSE	288	1.78301636398744	98	80202017	80290416	0.364342740527346	22	NA	0.364342740527346	22	NA	88399	NA	2	20	3	TRUE	AMP	PASS
659_bTo_pair	FGF6	12	4428155	4445614	FALSE	740	2.34844226201143	111	4270040	4445757	0.364342740527346	35	NA	0.364342740527346	35	NA	175717	NA	5	5	1	FALSE	AMP	PASS
659_bTo_pair	FGF7	15	49423096	49488775	FALSE	905	2.41077578776844	112	49423359	49488764	0.364342740527346	37	NA	0.364342740527346	37	NA	65405	NA	2	24	3	FALSE	AMP	PASS
659_bTo_pair	FGF8	10	101770130	101780369	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	8	0	FALSE	CNLOH	PASS
659_bTo_pair	FGF9	13	21671383	21704498	FALSE	822	1.78101191957063	98	21671146	21704372	0.364342740527346	22	NA	0.364342740527346	22	NA	33226	NA	1	17	3	FALSE	AMP	PASS
659_bTo_pair	FGFBP1	4	15935569	15938740	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	3	1	FALSE	GAIN	PASS
659_bTo_pair	FGFBP2	4	15960243	15969309	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	3	1	FALSE	GAIN	PASS
659_bTo_pair	FGFBP3	10	91906589	91909483	FALSE	662	-0.410954559094016	36	89715119	94762760	0.365165917639896	2	0	0.365165917639896	2	0	5047641	2	33	4	0	FALSE	CNLOH	PASS
659_bTo_pair	FGFR1	8	38400215	38468834	FALSE	534	-0.226190481947821	46	38275668	38428707	0.298322295679939	3	NA	0.298322295679939	3	NA	153039	NA	3	172	11	TRUE	GAIN (many states)	PASS
659_bTo_pair	FGFR1OP	6	166999182	167094789	FALSE	447	-0.721809212356928	19	165280135	167033904	0.365165917639896	1	0	0.365165917639896	1	0	1753769	1	11	14	4	TRUE	HETLOSS	PASS
659_bTo_pair	FGFR1OP2	12	26938383	26966650	FALSE	759	-0.427669886187443	30	25503824	31088026	1	2	1	1	2	1	5584202	1	28	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	FGFR2	10	121478334	121598458	FALSE	674	1.76393953219665	98	121473373	121790164	0.364342740527346	22	NA	0.364342740527346	22	NA	316791	NA	2	167	7	FALSE	AMP	PASS
659_bTo_pair	FGFR3	4	1793293	1808872	FALSE	273	1.40256714125575	88	1788352	1808671	0.364342740527346	16	NA	0.364342740527346	16	NA	20319	NA	1	32	2	FALSE	AMP	PASS
659_bTo_pair	FGFR4	5	177086886	177098144	FALSE	359	0.191654508238112	62	177081979	177293890	0.364342740527346	5	NA	0.364342740527346	5	NA	211911	NA	2	22	0	FALSE	AMP (many states)	PASS
659_bTo_pair	FGFRL1	4	1009936	1026897	FALSE	272	-0.300029378244858	40	85877	1745020	0.308149309490068	3	1	0.308149309490068	3	1	1659143	2	29	9	0	FALSE	GAIN	PASS
659_bTo_pair	FGG	4	154604134	154612967	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	FGGY	1	59296638	59810647	FALSE	21	-0.414935064922519	39	59321678	64830856	NA	2	NA	NA	2	NA	5509178	NA	22	17	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FGL1	8	17864380	17910365	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	FGL2	7	77193371	77199848	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	FGR	1	27612064	27635277	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	FH	1	241497603	241519761	TRUE	83	1.16197280309739	83	241497726	241524869	0.364342740527346	13	NA	0.364342740527346	13	NA	27143	NA	1	24	1	FALSE	AMP	PASS
659_bTo_pair	FHAD1	1	15247272	15400283	FALSE	6	-0.41295085321191	39	13779356	15847467	NA	2	NA	NA	2	NA	2068111	NA	18	31	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FHDC1	4	152936352	152979696	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	FHIT	3	59749310	61251459	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	5	2	FALSE	HETLOSS	PASS
659_bTo_pair	FHL1	23	136146702	136211359	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	FHL2	2	105357712	105438513	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	FHL3	1	37996770	38005606	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	FHL5	6	96562548	96616636	FALSE	411	-0.455063723695114	34	95586870	106069771	NA	2	NA	NA	2	NA	10482901	NA	27	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FHOD1	16	67229387	67247658	FALSE	976	-0.467350965811123	34	67110264	67538977	NA	2	NA	NA	2	NA	428713	NA	24	26	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FHOD3	18	36297714	36780055	FALSE	1095	-0.699288883997088	20	33734323	36718652	0.365165917639896	1	0	0.365165917639896	1	0	2984329	1	17	36	3	TRUE	HETLOSS	PASS
659_bTo_pair	FIBCD1	9	130902438	130939286	FALSE	623	-1.10575778455414	8	130893790	131117796	0.342391532111247	0	0	0.342391532111247	0	0	224006	0	4	9	0	FALSE	HOMDEL	PASS
659_bTo_pair	FIBIN	11	26994184	26996121	FALSE	690	-0.499672577426227	34	26697185	32104345	NA	2	NA	NA	2	NA	5407160	NA	20	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FIBP	11	65883741	65888539	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	10	1	FALSE	GAIN	PASS
659_bTo_pair	FICD	12	108515185	108525837	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	10	2	FALSE	DIPLOID	PASS
659_bTo_pair	FIG4	6	109691312	109825428	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	23	1	FALSE	DIPLOID	PASS
659_bTo_pair	FIGLA	2	70777310	70790643	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	FIGN	2	163593396	163736012	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	FIGNL1	7	50444128	50542535	FALSE	466	1.86891862787669	100	50304209	50447173	0.364342740527346	24	NA	0.364342740527346	24	NA	142964	NA	2	21	2	TRUE	AMP	PASS
659_bTo_pair	FIGNL2	12	51817840	51848766	FALSE	772	-0.61197679162419	26	50109466	51920864	NA	2	NA	NA	2	NA	1811398	NA	27	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FILIP1	6	75291859	75493738	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	FILIP1L	3	99830141	100114513	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	16	1	FALSE	GAIN	PASS
659_bTo_pair	FIP1L1	4	53377643	53460861	FALSE	283	-0.7726728361031	19	49038034	54241294	0.365165917639896	1	0	0.365165917639896	1	0	5203260	1	15	19	1	FALSE	HETLOSS	PASS
659_bTo_pair	FIS1	7	101239458	101252316	FALSE	484	-0.570670723449775	26	101042591	102111653	NA	2	NA	NA	2	NA	1069062	NA	15	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FITM1	14	24131275	24132849	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	FITM2	20	44302838	44311169	FALSE	1210	-0.476296426145969	34	43513997	45110019	NA	2	NA	NA	2	NA	1596022	NA	26	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FIZ1	19	55591371	55601970	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	7	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	FJX1	11	35618419	35620868	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	FKBP10	17	41812680	41823217	FALSE	1036	-0.764029118419186	19	41624551	42193564	0.365165917639896	1	0	0.365165917639896	1	0	569013	1	25	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	FKBP11	12	48921518	48926474	FALSE	768	-0.491963868457131	34	48045387	49018767	NA	2	NA	NA	2	NA	973380	NA	28	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FKBP14	7	30010587	30026684	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	4	0	FALSE	GAIN	PASS
659_bTo_pair	FKBP15	9	113161006	113221361	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	32	2	FALSE	DIPLOID	PASS
659_bTo_pair	FKBP1A	20	1368978	1393172	FALSE	1195	-0.60512265366003	23	87765	1537211	0.186356639256811	1	0	0.186356639256811	1	0	1449446	1	33	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	FKBP1B	2	24049701	24063681	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FKBP2	11	64241003	64244132	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	FKBP3	14	45115600	45135319	FALSE	858	-0.388807455224718	39	37680254	45134449	NA	2	NA	NA	2	NA	7454195	NA	16	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FKBP4	12	2794953	2805423	FALSE	739	-0.369471841682825	39	1104785	3873202	NA	2	NA	NA	2	NA	2768417	NA	20	11	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FKBP5	6	35573585	35728583	FALSE	393	-0.47521086997284	30	35476361	36677919	1	2	1	1	2	1	1201558	1	21	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	FKBP6	7	73328164	73358637	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	FKBP7	2	178463664	178478600	FALSE	155	-0.524315670340053	27	177420364	181062892	1	2	1	1	2	1	3642528	1	16	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	FKBP8	19	18531751	18544077	FALSE	1159	-0.165917001507678	49	18177228	19138502	0.365165917639896	3	1	0.365165917639896	3	1	961274	2	36	10	0	FALSE	GAIN	PASS
659_bTo_pair	FKBP9	7	32957404	33006931	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	13	1	FALSE	GAIN	PASS
659_bTo_pair	FKBPL	6	32128707	32130291	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	FKRP	19	46746046	46776988	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	10	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	FKTN	9	105558130	105641118	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	13	2	FALSE	DIPLOID	PASS
659_bTo_pair	FLAD1	1	154983338	154993111	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	FLCN	17	17212212	17237188	TRUE	1013	1.32513728824751	87	17203003	17242219	0.364342740527346	15	NA	0.364342740527346	15	NA	39216	NA	4	30	0	FALSE	AMP	PASS
659_bTo_pair	FLG	1	152302175	152325203	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	46	9	FALSE	DIPLOID	PASS
659_bTo_pair	FLG2	1	152348735	152360006	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	29	2	FALSE	DIPLOID	PASS
659_bTo_pair	FLI1	11	128686535	128813267	FALSE	733	1.22650714458615	84	128459018	128840166	0.364342740527346	14	NA	0.364342740527346	14	NA	381148	NA	3	22	1	FALSE	AMP	PASS
659_bTo_pair	FLII	17	18244836	18258916	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	30	0	FALSE	CNLOH	PASS
659_bTo_pair	FLNA	23	154348524	154374638	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	52	2	FALSE	INDETERMINATE	PASS
659_bTo_pair	FLNB	3	58008400	58172251	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	57	1	FALSE	HETLOSS	PASS
659_bTo_pair	FLNC	7	128830377	128859274	FALSE	492	-0.463656181520944	30	126439208	129166764	1	2	1	1	2	1	2727556	1	27	55	8	FALSE	DIPLOID	PASS
659_bTo_pair	FLOT1	6	30727709	30742733	FALSE	379	-0.524744136561063	27	30546321	31270541	1	2	1	1	2	1	724220	1	30	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	FLOT2	17	28879335	28897679	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	FLRT1	11	64103188	64119173	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	FLRT2	14	85530144	85654426	FALSE	870	-0.471399657488227	30	81180359	92000019	1	2	1	1	2	1	10819660	1	29	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	FLRT3	20	14322988	14337616	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	FLT1	13	28300344	28495145	FALSE	827	1.26162794980767	86	28300428	28495039	0.364342740527346	15	NA	0.364342740527346	15	NA	194611	NA	1	61	4	FALSE	AMP	PASS
659_bTo_pair	FLT3	13	28003274	28100592	FALSE	825	0.712944971231206	74	27998331	28100538	0.364342740527346	9	NA	0.364342740527346	9	NA	102207	NA	1	32	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	FLT3LG	19	49474207	49486231	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	FLT4	5	180601506	180649624	FALSE	362	0.432595155869503	66	180601743	180739261	0.364342740527346	7	NA	0.364342740527346	7	NA	137518	NA	2	40	8	FALSE	INDETERMINATE	PASS
659_bTo_pair	FLVCR1	1	212858255	212899363	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	FLVCR2	14	75578617	75663214	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	FLYWCH1	16	2911937	2951208	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	FLYWCH2	16	2883186	2899382	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	FMC1	7	139339457	139346319	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	FMN1	15	32765545	33194733	FALSE	888	-0.723950250184678	19	32774281	34342000	0.365165917639896	1	0	0.365165917639896	1	0	1567719	1	10	34	1	FALSE	HETLOSS	PASS
659_bTo_pair	FMN2	1	240014348	240475189	FALSE	82	-0.550278310688863	27	235196044	241494870	1	2	1	1	2	1	6298826	1	22	32	5	FALSE	DIPLOID	PASS
659_bTo_pair	FMNL1	17	45221444	45247320	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	27	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FMNL2	2	152335237	152649834	FALSE	149	-0.454179855872301	30	147845197	157628657	1	2	1	1	2	1	9783460	1	30	27	2	FALSE	DIPLOID	PASS
659_bTo_pair	FMNL3	12	49636499	49708165	FALSE	770	-0.500134310902258	34	49065087	50081631	NA	2	NA	NA	2	NA	1016544	NA	25	39	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FMO1	1	171248471	171285978	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	FMO2	1	171185208	171211230	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	10	3	FALSE	DIPLOID	PASS
659_bTo_pair	FMO3	1	171090877	171117819	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	11	3	FALSE	DIPLOID	PASS
659_bTo_pair	FMO4	1	171314208	171342084	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	FMO5	1	147175351	147243050	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	FMOD	1	203340628	203351758	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	FMR1	23	147911951	147951125	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	17	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	FMR1NB	23	147981329	148026667	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	6	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	FN1	2	215360440	215436172	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	53	0	FALSE	HETLOSS	PASS
659_bTo_pair	FN3K	17	82735575	82751197	FALSE	1085	-0.607666454607286	26	82405295	83094473	NA	2	NA	NA	2	NA	689178	NA	13	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FN3KRP	17	82716683	82730328	FALSE	1085	-0.607666454607286	26	82405295	83094473	NA	2	NA	NA	2	NA	689178	NA	13	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FNBP1	9	129887187	130043194	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	17	1	FALSE	HETLOSS	PASS
659_bTo_pair	FNBP1L	1	93448131	93554661	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	FNBP4	11	47716517	47767443	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	FNDC1	6	159169397	159272109	FALSE	444	-0.505238631103688	30	158776425	160753038	1	2	1	1	2	1	1976613	1	17	33	6	FALSE	DIPLOID	PASS
659_bTo_pair	FNDC10	1	1598012	1600096	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	FNDC11	20	63547891	63556708	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	FNDC3A	13	48975912	49209779	FALSE	835	-0.766581964775609	19	48490223	50953919	0.365165917639896	1	0	0.365165917639896	1	0	2463696	1	18	28	0	FALSE	HETLOSS	PASS
659_bTo_pair	FNDC3B	3	172039628	172401665	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	28	1	FALSE	GAIN	PASS
659_bTo_pair	FNDC4	2	27491883	27495245	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	FNDC5	1	32862268	32872482	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	FNDC7	1	108712657	108742740	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	16	1	FALSE	HETLOSS	PASS
659_bTo_pair	FNDC8	17	35121579	35130732	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	FNDC9	5	157341600	157345721	FALSE	353	-0.698571741790457	22	157138801	161546576	0.291335969972972	1	0	0.291335969972972	1	0	4407775	1	29	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	FNIP1	5	131641714	131797063	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	23	0	FALSE	HETLOSS	PASS
659_bTo_pair	FNIP2	4	158769138	158908049	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	24	1	FALSE	HETLOSS	PASS
659_bTo_pair	FNTA	8	43034194	43085788	FALSE	541	-0.815492706726597	16	42338595	47735321	0.365165917639896	1	0	0.365165917639896	1	0	5396726	1	15	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	FNTB	14	64986720	65062652	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	18	0	TRUE	DIPLOID	PASS
659_bTo_pair	FO393400.1	20	32632183	32743567	FALSE	1202	0.844808231617173	76	32358370	32836730	0.364342740527346	10	NA	0.364342740527346	10	NA	478360	NA	7	11	0	FALSE	AMP	PASS
659_bTo_pair	FOCAD	9	20658309	20995955	FALSE	583	-0.387007513258167	39	20715331	21839114	NA	2	NA	NA	2	NA	1123783	NA	21	45	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FOLH1	11	49146635	49208670	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	21	5	FALSE	DIPLOID	PASS
659_bTo_pair	FOLR1	11	72189558	72196323	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	8	1	FALSE	GAIN	PASS
659_bTo_pair	FOLR2	11	72216601	72221950	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	5	0	FALSE	GAIN	PASS
659_bTo_pair	FOLR3	11	72114869	72139892	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	5	0	FALSE	GAIN	PASS
659_bTo_pair	FOPNL	16	15865720	15888625	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	5	2	FALSE	DIPLOID	PASS
659_bTo_pair	FOS	14	75278774	75282230	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	FOSB	19	45467995	45475179	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	FOSL1	11	65892049	65900573	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	5	1	FALSE	GAIN	PASS
659_bTo_pair	FOSL2	2	28392448	28417312	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	FOXA1	14	37589984	37596059	TRUE	857	1.78895175673229	98	37546976	37622795	0.364342740527346	23	NA	0.364342740527346	23	NA	75819	NA	3	14	0	FALSE	AMP	PASS
659_bTo_pair	FOXA2	20	22581005	22585455	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	FOXA3	19	45863989	45873797	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	FOXB1	15	60004222	60061730	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	FOXB2	9	77019655	77020953	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	FOXC1	6	1609972	1613897	FALSE	366	-0.56930463675583	26	486737	3019480	NA	2	NA	NA	2	NA	2532743	NA	12	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FOXC2	16	86566829	86569728	FALSE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	FOXD1	5	73444827	73448527	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	FOXD2	1	47436017	47440691	FALSE	16	-0.485631979032023	30	46175602	48453048	1	2	1	1	2	1	2277446	1	32	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	FOXD3	1	63323041	63325126	FALSE	21	-0.414935064922519	39	59321678	64830856	NA	2	NA	NA	2	NA	5509178	NA	22	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FOXD4	9	116231	118204	FALSE	570	-0.801602085682206	16	14889	1057241	0.365165917639896	1	0	0.365165917639896	1	0	1042352	1	9	6	2	FALSE	HETLOSS	PASS
659_bTo_pair	FOXD4L1	2	113498665	113501155	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	FOXD4L3	9	68302867	68304905	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	FOXD4L4	9	65736555	65738784	FALSE	595	-0.209027397852981	47	37442028	67884575	0.365165917639896	3	1	0.365165917639896	3	1	30442547	2	35	2	1	FALSE	GAIN	PASS
659_bTo_pair	FOXD4L5	9	65282101	65285209	FALSE	595	-0.209027397852981	47	37442028	67884575	0.365165917639896	3	1	0.365165917639896	3	1	30442547	2	35	4	1	FALSE	GAIN	PASS
659_bTo_pair	FOXD4L6	9	41126430	41128463	FALSE	595	-0.209027397852981	47	37442028	67884575	0.365165917639896	3	1	0.365165917639896	3	1	30442547	2	35	2	1	FALSE	GAIN	PASS
659_bTo_pair	FOXE1	9	97853254	97856715	FALSE	608	-0.541405085979946	27	95522076	99069752	1	2	1	1	2	1	3547676	1	31	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	FOXE3	1	47416072	47418052	FALSE	16	-0.485631979032023	30	46175602	48453048	1	2	1	1	2	1	2277446	1	32	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	FOXF1	16	86510527	86515418	TRUE	988	1.64665884287309	96	85806868	86510965	0.364342740527346	20	NA	0.364342740527346	20	NA	704097	NA	3	5	0	TRUE	AMP	PASS
659_bTo_pair	FOXF2	6	1389576	1395603	FALSE	366	-0.56930463675583	26	486737	3019480	NA	2	NA	NA	2	NA	2532743	NA	12	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FOXG1	14	28760330	28770277	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	FOXH1	8	144473412	144476335	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	FOXI1	5	170105897	170109725	FALSE	356	-0.773912908266316	17	162095550	171298806	0.365165917639896	1	0	0.365165917639896	1	0	9203256	1	21	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	FOXI2	10	127737235	127741186	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	5	0	FALSE	CNLOH	PASS
659_bTo_pair	FOXI3	2	88446787	88452656	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	FOXJ1	17	76136333	76141299	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	FOXJ2	12	8032703	8055503	FALSE	745	-0.243574834353832	44	6965649	8175835	0.345317016959666	3	1	0.345317016959666	3	1	1210186	2	26	12	0	FALSE	GAIN	PASS
659_bTo_pair	FOXJ3	1	42176539	42335877	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	FOXK1	7	4682309	4771443	FALSE	453	-0.32600279290147	42	3619174	5500988	0.189552622934988	3	0	0.189552622934988	3	0	1881814	3	12	14	1	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	FOXK2	17	82519713	82644662	FALSE	1085	-0.607666454607286	26	82405295	83094473	NA	2	NA	NA	2	NA	689178	NA	13	20	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FOXL1	16	86576368	86582160	FALSE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	FOXL2	3	138944224	138947140	TRUE	245	0.794201723555962	75	138633038	139044349	0.364342740527346	10	NA	0.364342740527346	10	NA	411311	NA	8	11	0	FALSE	AMP	PASS
659_bTo_pair	FOXL2NB	3	138947234	138953451	FALSE	245	0.794201723555962	75	138633038	139044349	0.364342740527346	10	NA	0.364342740527346	10	NA	411311	NA	8	7	0	FALSE	AMP	PASS
659_bTo_pair	FOXM1	12	2857681	2877155	FALSE	739	-0.369471841682825	39	1104785	3873202	NA	2	NA	NA	2	NA	2768417	NA	20	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FOXN1	17	28506243	28538896	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	FOXN2	2	48314637	48379294	FALSE	109	0.265429574535633	63	47340240	48375433	0.364342740527346	6	NA	0.364342740527346	6	NA	1035193	NA	6	9	1	FALSE	AMP (many states)	PASS
659_bTo_pair	FOXN3	14	89124871	89619149	FALSE	870	-0.471399657488227	30	81180359	92000019	1	2	1	1	2	1	10819660	1	29	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	FOXN4	12	109277979	109309220	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	FOXO1	13	40469953	40666597	TRUE	831	2.35782911259595	111	40550744	40560901	0.364342740527346	35	NA	0.364342740527346	35	NA	10157	NA	1	36	6	TRUE	AMP	PASS
659_bTo_pair	FOXO3	6	108559835	108684774	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	FOXO4	23	71096197	71103535	FALSE	1313	0.277003378144951	63	70925855	71111565	0.364342740527346	6	NA	0.364342740527346	6	NA	185710	NA	6	8	0	FALSE	AMP (many states)	PASS
659_bTo_pair	FOXO6	1	41361922	41383590	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	FOXP1	3	70952817	71583993	TRUE	229	0.774994071504096	74	69734550	71589030	0.364342740527346	9	NA	0.364342740527346	9	NA	1854480	NA	4	65	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	FOXP2	7	114086327	114693772	FALSE	488	-0.464127371400283	34	107070260	116559206	NA	2	NA	NA	2	NA	9488946	NA	33	18	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FOXP3	23	49250436	49264826	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	11	0	FALSE	AMP (many states)	PASS
659_bTo_pair	FOXP4	6	41546426	41602384	FALSE	397	-0.509151429367598	27	37213022	41687167	1	2	1	1	2	1	4474145	1	33	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	FOXQ1	6	1312440	1314748	FALSE	366	-0.56930463675583	26	486737	3019480	NA	2	NA	NA	2	NA	2532743	NA	12	5	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FOXR1	11	118971707	118981291	FALSE	728	-0.487905654975058	30	118527582	119195409	1	2	1	1	2	1	667827	1	26	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	FOXR2	23	55623400	55625325	FALSE	1303	0.0232492223836125	56	53426353	57488811	0.365165917639896	4	NA	0.365165917639896	4	NA	4062458	NA	32	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	FOXRED1	11	126269055	126278131	FALSE	732	-0.497254377564454	34	125672754	127000522	NA	2	NA	NA	2	NA	1327768	NA	19	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FOXRED2	22	36487190	36507101	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	13	2	FALSE	CNLOH	PASS
659_bTo_pair	FOXS1	20	31844301	31845619	FALSE	1201	-0.583226555890856	26	31757461	32331296	NA	2	NA	NA	2	NA	573835	NA	13	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FPGS	9	127794597	127814327	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	FPGT	1	74198212	74234086	FALSE	25	-0.394411030612058	39	74026891	77942032	NA	2	NA	NA	2	NA	3915141	NA	22	9	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FPGT-TNNI3K	1	74198235	74544393	FALSE	25	-0.394411030612058	39	74026891	77942032	NA	2	NA	NA	2	NA	3915141	NA	22	35	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FPR1	19	51745172	51804110	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	10	2	FALSE	HETLOSS	PASS
659_bTo_pair	FPR2	19	51752026	51770526	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	FPR3	19	51795163	51826189	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	FRA10AC1	10	93667883	93702572	FALSE	662	-0.410954559094016	36	89715119	94762760	0.365165917639896	2	0	0.365165917639896	2	0	5047641	2	33	13	1	FALSE	CNLOH	PASS
659_bTo_pair	FRAS1	4	78057570	78544269	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	82	14	FALSE	DIPLOID	PASS
659_bTo_pair	FRAT1	10	97319267	97321915	FALSE	664	-0.371799025630062	36	96955124	97864220	0.365165917639896	2	0	0.365165917639896	2	0	909096	2	23	4	0	FALSE	CNLOH	PASS
659_bTo_pair	FRAT2	10	97332497	97334709	FALSE	664	-0.371799025630062	36	96955124	97864220	0.365165917639896	2	0	0.365165917639896	2	0	909096	2	23	3	0	FALSE	CNLOH	PASS
659_bTo_pair	FREM1	9	14734666	14910995	FALSE	581	-0.746183084602222	19	10618009	19786745	0.365165917639896	1	0	0.365165917639896	1	0	9168736	1	24	44	0	FALSE	HETLOSS	PASS
659_bTo_pair	FREM2	13	38687129	38887131	FALSE	830	-0.745621963362667	19	32401848	39788354	0.365165917639896	1	0	0.365165917639896	1	0	7386506	1	30	49	2	FALSE	HETLOSS	PASS
659_bTo_pair	FREM3	4	143577302	143700675	FALSE	300	-0.423460920061428	34	143186078	151174790	NA	2	NA	NA	2	NA	7988712	NA	32	27	6	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FRG1	4	189940788	189963204	FALSE	307	-0.829378869737769	16	188002775	190026761	0.365165917639896	1	0	0.365165917639896	1	0	2023986	1	5	9	3	FALSE	HETLOSS	PASS
659_bTo_pair	FRG2	4	190024351	190027257	FALSE	307	-0.829378869737769	16	188002775	190026761	0.365165917639896	1	0	0.365165917639896	1	0	2023986	1	5	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	FRG2B	10	133623895	133626795	FALSE	676	-0.612597388333807	25	132187132	133626712	0.365165917639896	1	0	0.365165917639896	1	0	1439580	1	27	5	3	FALSE	HETLOSS	PASS
659_bTo_pair	FRG2C	3	75664330	75667220	FALSE	232	-0.785224171872638	14	72888305	88156485	0.365165917639896	1	0	0.365165917639896	1	0	15268180	1	18	5	4	FALSE	HETLOSS	PASS
659_bTo_pair	FRK	6	115931149	116060758	FALSE	417	-0.520434008170675	29	114058103	117272433	NA	2	NA	NA	2	NA	3214330	NA	20	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FRMD1	6	168053166	168101511	FALSE	449	-0.520973998932362	27	167374374	170584540	1	2	1	1	2	1	3210166	1	18	16	2	FALSE	DIPLOID	PASS
659_bTo_pair	FRMD3	9	83242990	83538546	FALSE	598	-0.546497547865564	29	78236395	83956411	NA	2	NA	NA	2	NA	5720016	NA	14	20	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FRMD4A	10	13643706	14462142	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	28	2	FALSE	CNLOH	PASS
659_bTo_pair	FRMD4B	3	69169990	69542583	FALSE	228	-0.860828429618822	13	64010871	69385924	0.365165917639896	1	0	0.365165917639896	1	0	5375053	1	16	26	2	FALSE	HETLOSS	PASS
659_bTo_pair	FRMD5	15	43870761	44195252	FALSE	902	-0.672637691845835	22	43521582	44676538	0.291335969972972	1	0	0.291335969972972	1	0	1154956	1	21	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	FRMD6	14	51489100	51730727	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	FRMD7	23	132076993	132128020	FALSE	1335	0.100243493544559	59	130066940	134244999	0.308533751035793	5	NA	0.308533751035793	5	NA	4178059	NA	21	16	0	FALSE	AMP (many states)	PASS
659_bTo_pair	FRMD8	11	65386599	65413525	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	12	1	FALSE	GAIN	PASS
659_bTo_pair	FRMPD1	9	37651000	37746904	FALSE	595	-0.209027397852981	47	37442028	67884575	0.365165917639896	3	1	0.365165917639896	3	1	30442547	2	35	27	4	FALSE	GAIN	PASS
659_bTo_pair	FRMPD2	10	48153088	48274870	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	29	2	FALSE	CNLOH	PASS
659_bTo_pair	FRMPD3	23	107522450	107605251	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	29	0	FALSE	AMP (many states)	PASS
659_bTo_pair	FRMPD4	23	12138466	12724523	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	26	1	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	FRRS1	1	99708632	99766631	FALSE	31	-0.34979279123772	43	94820443	100270584	0.192136715055622	3	NA	0.192136715055622	3	NA	5450141	NA	22	15	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	FRRS1L	9	109130293	109167295	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	FRS2	12	69470349	69579789	FALSE	789	2.5930897474487	115	69470390	69586384	0.364342740527346	42	NA	0.364342740527346	42	NA	115994	NA	2	31	0	FALSE	AMP	PASS
659_bTo_pair	FRS3	6	41770176	41786542	FALSE	399	-0.575359055127692	26	41736131	41931766	NA	2	NA	NA	2	NA	195635	NA	9	14	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FRY	13	31846713	32299122	FALSE	828	-0.893717680890687	13	28659152	32311865	0.365165917639896	1	0	0.365165917639896	1	0	3652713	1	17	67	6	FALSE	HETLOSS	PASS
659_bTo_pair	FRYL	4	48497361	48780322	FALSE	282	-0.204234033978701	47	41752697	49032685	0.365165917639896	3	1	0.365165917639896	3	1	7279988	2	31	66	5	FALSE	GAIN	PASS
659_bTo_pair	FRZB	2	182833275	182867162	FALSE	157	-0.495064743595466	30	181539293	185786350	1	2	1	1	2	1	4247057	1	12	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	FSBP	8	94372170	94436952	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	19	2	FALSE	GAIN	PASS
659_bTo_pair	FSCB	14	44504342	44507279	FALSE	858	-0.388807455224718	39	37680254	45134449	NA	2	NA	NA	2	NA	7454195	NA	16	10	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FSCN1	7	5592823	5606655	FALSE	455	0.0869447764468888	59	5592963	6026819	0.308533751035793	5	NA	0.308533751035793	5	NA	433856	NA	8	8	0	FALSE	AMP (many states)	PASS
659_bTo_pair	FSCN2	17	81528396	81537130	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	FSCN3	7	127591409	127602144	FALSE	492	-0.463656181520944	30	126439208	129166764	1	2	1	1	2	1	2727556	1	27	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	FSD1	19	4304600	4323843	FALSE	1124	-0.62008955817668	23	4168484	5151543	0.186356639256811	1	0	0.186356639256811	1	0	983059	1	28	14	2	FALSE	HETLOSS	PASS
659_bTo_pair	FSD1L	9	105447796	105552433	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	FSD2	15	82755362	82806070	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	16	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	FSHB	11	30231016	30235261	FALSE	690	-0.499672577426227	34	26697185	32104345	NA	2	NA	NA	2	NA	5407160	NA	20	2	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FSHR	2	48962157	49154537	FALSE	110	-0.435434252584523	30	48441014	54599245	1	2	1	1	2	1	6158231	1	18	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	FSIP1	15	39588357	39782830	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	27	0	FALSE	HETLOSS	PASS
659_bTo_pair	FSIP2	2	185738895	185833290	FALSE	157	-0.495064743595466	30	181539293	185786350	1	2	1	1	2	1	4247057	1	12	93	21	TRUE	DIPLOID	PASS
659_bTo_pair	FST	5	53480409	53487134	FALSE	319	-0.764156631411702	19	50399919	56556187	0.365165917639896	1	0	0.365165917639896	1	0	6156268	1	28	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	FSTL1	3	120392293	120451253	FALSE	236	-0.555107352649266	26	120168171	121419120	NA	2	NA	NA	2	NA	1250949	NA	8	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FSTL3	19	676365	683399	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	FSTL4	5	133196455	133612564	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	FSTL5	4	161383897	162164035	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	18	2	FALSE	HETLOSS	PASS
659_bTo_pair	FTCD	21	46136262	46155567	FALSE	1239	-0.568555801579827	23	44960223	46664365	0.186356639256811	1	0	0.186356639256811	1	0	1704142	1	18	18	3	FALSE	HETLOSS	PASS
659_bTo_pair	FTCDNL1	2	199760544	199851173	FALSE	164	-0.381871160033202	39	198084145	201228955	NA	2	NA	NA	2	NA	3144810	NA	19	5	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FTH1	11	61959718	61967660	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	10	0	FALSE	GAIN	PASS
659_bTo_pair	FTHL17	23	31071241	31072053	FALSE	1282	-0.198839212217093	48	28789325	33339312	0.365165917639896	3	NA	0.365165917639896	3	NA	4549987	NA	11	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	FTL	19	48965301	48966878	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	FTMT	5	121851955	121852833	FALSE	331	-0.706980197323045	20	112861366	122075379	0.365165917639896	1	0	0.365165917639896	1	0	9214013	1	31	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	FTO	16	53701692	54158512	FALSE	968	-0.505434692233225	30	51151209	56683230	1	2	1	1	2	1	5532021	1	34	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	FTSJ1	23	48476021	48486364	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	10	0	FALSE	AMP (many states)	PASS
659_bTo_pair	FTSJ3	17	63819433	63830012	FALSE	1064	-0.419094292936043	39	61867575	63873599	NA	2	NA	NA	2	NA	2006024	NA	24	24	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FUBP1	1	77944055	77979110	TRUE	26	0.755148308135962	74	77942350	77968165	0.364342740527346	9	NA	0.364342740527346	9	NA	25815	NA	2	41	0	TRUE	INDETERMINATE	PASS
659_bTo_pair	FUBP3	9	130578965	130638352	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	19	2	FALSE	HETLOSS	PASS
659_bTo_pair	FUCA1	1	23845077	23868294	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	FUCA2	6	143494811	143511690	FALSE	431	-0.504239059693729	30	143136912	149638436	1	2	1	1	2	1	6501524	1	29	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	FUK	16	70454421	70480274	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	26	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FUNDC1	23	44523639	44543001	FALSE	1290	-0.118437036786996	53	41447899	44844689	0.273255132087987	4	NA	0.273255132087987	4	NA	3396790	NA	11	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	FUNDC2	23	155025980	155060303	FALSE	1341	-0.0231097163941018	55	154552015	155545250	0.328696605851359	4	NA	0.328696605851359	4	NA	993235	NA	23	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	FUOM	10	133355154	133358035	FALSE	676	-0.612597388333807	25	132187132	133626712	0.365165917639896	1	0	0.365165917639896	1	0	1439580	1	27	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	FURIN	15	90868592	90883458	FALSE	928	0.797158855072889	75	90717363	90875863	0.364342740527346	10	NA	0.364342740527346	10	NA	158500	NA	2	18	0	TRUE	AMP	PASS
659_bTo_pair	FUS	16	31180110	31194871	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	FUT1	19	48748011	48755390	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	FUT10	8	33370824	33473422	FALSE	528	-1.13877676700397	7	33372685	36932925	0.365165917639896	0	0	0.365165917639896	0	0	3560240	0	7	8	1	FALSE	HOMDEL	PASS
659_bTo_pair	FUT11	10	73772291	73780251	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	8	1	FALSE	CNLOH	PASS
659_bTo_pair	FUT2	19	48695971	48705950	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	FUT3	19	5842888	5851474	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	FUT4	11	94543840	94549898	FALSE	717	-0.427991611956568	34	94512673	100992623	NA	2	NA	NA	2	NA	6479950	NA	19	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FUT5	19	5865826	5870540	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	FUT6	19	5830610	5839731	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	FUT7	9	137030174	137033010	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	FUT8	14	65410592	65744121	FALSE	862	-0.496151350288089	31	65561584	67816009	1	2	1	1	2	1	2254425	1	17	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	FUT9	6	96015984	96215612	FALSE	411	-0.455063723695114	34	95586870	106069771	NA	2	NA	NA	2	NA	10482901	NA	27	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FUZ	19	49806869	49817376	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	FXN	9	69035259	69120427	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	FXR1	3	180868141	180982753	FALSE	253	-0.302573270656947	43	179243074	180989661	0.192136715055622	3	NA	0.192136715055622	3	NA	1746587	NA	13	17	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	FXR2	17	7591230	7614871	FALSE	1000	-0.750226164220686	19	7324407	7655594	0.365165917639896	1	0	0.365165917639896	1	0	331187	1	31	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	FXYD1	19	35138808	35143109	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	FXYD2	11	117800844	117828698	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	FXYD3	19	35115879	35124324	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	FXYD4	10	43371642	43376335	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	6	0	FALSE	CNLOH	PASS
659_bTo_pair	FXYD5	19	35154730	35169883	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	FXYD6	11	117836976	117877486	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	FXYD6-FXYD2	11	117820163	117876667	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	FXYD7	19	35143250	35154301	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	FYB1	5	39105255	39274528	FALSE	316	-0.143574193475256	49	39021030	43704252	0.365165917639896	3	1	0.365165917639896	3	1	4683222	2	28	23	1	FALSE	GAIN	PASS
659_bTo_pair	FYB2	1	56718804	56819696	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	23	3	FALSE	DIPLOID	PASS
659_bTo_pair	FYCO1	3	45917899	45995824	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	32	4	FALSE	HETLOSS	PASS
659_bTo_pair	FYN	6	111660332	111873452	FALSE	414	0.538907519348198	68	111660319	112071999	0.364342740527346	7	NA	0.364342740527346	7	NA	411680	NA	3	23	3	FALSE	INDETERMINATE	PASS
659_bTo_pair	FYTTD1	3	197737179	197787596	FALSE	271	-0.194588974812627	47	196198492	198169864	0.365165917639896	3	1	0.365165917639896	3	1	1971372	2	29	10	0	FALSE	GAIN	PASS
659_bTo_pair	FZD1	7	91264364	91271326	FALSE	479	-0.448308050861149	30	87602941	92590330	1	2	1	1	2	1	4987389	1	30	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	FZD10	12	130162459	130165740	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	FZD2	17	44557459	44559570	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	FZD3	8	28494205	28574268	FALSE	523	-1.08188475411826	8	27469296	29263060	0.342391532111247	0	0	0.342391532111247	0	0	1793764	0	18	10	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	FZD4	11	86945679	86955391	FALSE	714	-0.230278951577934	46	86306357	90211282	0.298322295679939	3	NA	0.298322295679939	3	NA	3904925	NA	21	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	FZD5	2	207762586	207769563	FALSE	168	-0.499602545595775	30	203936898	208231285	1	2	1	1	2	1	4294387	1	25	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	FZD6	8	103298433	103332866	FALSE	561	-0.210477706860293	47	102652438	116770243	0.365165917639896	3	1	0.365165917639896	3	1	14117805	2	32	10	3	FALSE	GAIN	PASS
659_bTo_pair	FZD7	2	202034587	202038445	FALSE	166	-0.425780118113581	30	201288659	203854096	1	2	1	1	2	1	2565437	1	22	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	FZD8	10	35638249	35642278	FALSE	640	-0.421497241268382	32	32269100	43094667	0.365165917639896	2	0	0.365165917639896	2	0	10825567	2	20	8	0	FALSE	CNLOH	PASS
659_bTo_pair	FZD9	7	73433783	73436120	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	FZR1	19	3506273	3538330	FALSE	1122	-0.653400653967241	21	3157829	4037863	0.140309795179477	0	0	0.140309795179477	0	0	880034	0	27	14	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	G0S2	1	209675420	209676388	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	G2E3	14	30559123	30620063	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	G3BP1	5	151771045	151812785	FALSE	350	-0.819899512516675	16	150444373	153997804	0.365165917639896	1	0	0.365165917639896	1	0	3553431	1	25	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	G3BP2	4	75642782	75724525	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	G6PC	17	42900797	42913369	FALSE	1040	-0.646197503395479	26	42761348	43039396	NA	2	NA	NA	2	NA	278048	NA	18	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	G6PC2	2	168901240	168910000	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	G6PC3	17	44070735	44076344	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	8	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	G6PD	23	154531390	154547572	FALSE	1340	2.24617742489859	109	154517863	154547412	0.364342740527346	32	NA	0.364342740527346	32	NA	29549	NA	2	19	0	FALSE	AMP	PASS
659_bTo_pair	GAA	17	80101556	80119879	FALSE	1081	-0.503130193321286	34	78873805	80288187	NA	2	NA	NA	2	NA	1414382	NA	19	22	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GAB1	4	143336762	143474568	FALSE	300	-0.423460920061428	34	143186078	151174790	NA	2	NA	NA	2	NA	7988712	NA	32	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GAB2	11	78215297	78418348	FALSE	712	-0.188800010767045	48	77590086	86068715	0.365165917639896	3	NA	0.365165917639896	3	NA	8478629	NA	30	14	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	GAB3	23	154675249	154751583	FALSE	1341	-0.0231097163941018	55	154552015	155545250	0.328696605851359	4	NA	0.328696605851359	4	NA	993235	NA	23	12	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	GAB4	22	16961936	17008222	FALSE	1240	-0.594689860601271	26	15528179	18606839	NA	2	NA	NA	2	NA	3078660	NA	21	14	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GABARAP	17	7240014	7242770	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	GABARAPL1	12	10212458	10223130	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	GABARAPL2	16	75566351	75577881	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	GABBR1	6	29555629	29633976	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	31	1	FALSE	DIPLOID	PASS
659_bTo_pair	GABBR2	9	98288082	98709197	FALSE	608	-0.541405085979946	27	95522076	99069752	1	2	1	1	2	1	3547676	1	31	20	1	FALSE	DIPLOID	PASS
659_bTo_pair	GABPA	21	25734570	25772460	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	GABPB1	15	50275392	50355408	FALSE	906	-0.753975485974629	19	49508303	51105073	0.365165917639896	1	0	0.365165917639896	1	0	1596770	1	12	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	GABPB2	1	151070578	151125542	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	GABRA1	5	161847063	161899981	FALSE	355	-0.825399975045186	16	161850856	162093956	0.365165917639896	1	0	0.365165917639896	1	0	243100	1	2	11	2	FALSE	HETLOSS	PASS
659_bTo_pair	GABRA2	4	46248427	46475230	FALSE	282	-0.204234033978701	47	41752697	49032685	0.365165917639896	3	1	0.365165917639896	3	1	7279988	2	31	12	0	FALSE	GAIN	PASS
659_bTo_pair	GABRA3	23	152166234	152451358	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	11	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	GABRA4	4	46918900	46994407	FALSE	282	-0.204234033978701	47	41752697	49032685	0.365165917639896	3	1	0.365165917639896	3	1	7279988	2	31	12	0	FALSE	GAIN	PASS
659_bTo_pair	GABRA5	15	26866363	26949207	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	10	2	FALSE	HETLOSS	PASS
659_bTo_pair	GABRA6	5	161547063	161702593	FALSE	354	1.13824940150645	83	161685962	161702564	0.364342740527346	13	NA	0.364342740527346	13	NA	16602	NA	1	15	0	FALSE	AMP	PASS
659_bTo_pair	GABRB1	4	46993723	47426444	FALSE	282	-0.204234033978701	47	41752697	49032685	0.365165917639896	3	1	0.365165917639896	3	1	7279988	2	31	11	1	FALSE	GAIN	PASS
659_bTo_pair	GABRB2	5	161288429	161549044	FALSE	353	-0.698571741790457	22	157138801	161546576	0.291335969972972	1	0	0.291335969972972	1	0	4407775	1	29	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	GABRB3	15	26543546	26939539	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	19	3	FALSE	HETLOSS	PASS
659_bTo_pair	GABRD	1	2019298	2030758	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	GABRE	23	151953124	151974680	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	10	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	GABRG1	4	46035769	46124081	FALSE	282	-0.204234033978701	47	41752697	49032685	0.365165917639896	3	1	0.365165917639896	3	1	7279988	2	31	11	1	FALSE	GAIN	PASS
659_bTo_pair	GABRG2	5	162000057	162162977	FALSE	355	-0.825399975045186	16	161850856	162093956	0.365165917639896	1	0	0.365165917639896	1	0	243100	1	2	11	2	TRUE	HETLOSS	PASS
659_bTo_pair	GABRG3	15	26971282	27541991	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	11	2	FALSE	HETLOSS	PASS
659_bTo_pair	GABRP	5	170763350	170814047	FALSE	356	-0.773912908266316	17	162095550	171298806	0.365165917639896	1	0	0.365165917639896	1	0	9203256	1	21	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	GABRQ	23	152638183	152657534	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	12	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	GABRR1	6	89177501	89231278	FALSE	409	-0.443147941484883	34	89098919	90586786	NA	2	NA	NA	2	NA	1487867	NA	13	12	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GABRR2	6	89257208	89315299	FALSE	409	-0.443147941484883	34	89098919	90586786	NA	2	NA	NA	2	NA	1487867	NA	13	10	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GABRR3	3	97986673	98035304	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	11	0	FALSE	GAIN	PASS
659_bTo_pair	GAD1	2	170813213	170861151	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	18	1	FALSE	DIPLOID	PASS
659_bTo_pair	GAD2	10	26216307	26304558	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	17	0	FALSE	CNLOH	PASS
659_bTo_pair	GADD45A	1	67685061	67688338	FALSE	23	-0.326404897444941	43	65224778	71080923	0.192136715055622	3	NA	0.192136715055622	3	NA	5856145	NA	29	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	GADD45B	19	2476122	2478259	FALSE	1120	-0.63588318052236	23	2233887	3062886	0.186356639256811	1	0	0.186356639256811	1	0	828999	1	28	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	GADD45G	9	89605013	89606555	FALSE	604	-0.547885090101936	27	85547201	90613824	1	2	1	1	2	1	5066623	1	21	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	GADD45GIP1	19	12953119	12957236	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	GADL1	3	30726200	30894765	FALSE	207	-0.954774113940666	11	30728408	31636070	0.289956079954009	0	0	0.289956079954009	0	0	907662	0	2	15	1	FALSE	HOMDEL	PASS
659_bTo_pair	GAGE1	23	49589496	49608536	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	GAGE10	23	49303669	49319844	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	3	0	FALSE	AMP (many states)	PASS
659_bTo_pair	GAGE12D	23	49541767	49549094	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	1	0	FALSE	AMP (many states)	PASS
659_bTo_pair	GAGE12G	23	49570434	49577754	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	1	0	FALSE	AMP (many states)	PASS
659_bTo_pair	GAGE12H	23	49579983	49587301	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	1	0	FALSE	AMP (many states)	PASS
659_bTo_pair	GAGE12J	23	49322057	49329384	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	3	1	FALSE	AMP (many states)	PASS
659_bTo_pair	GAGE13	23	49331616	49338952	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	1	1	FALSE	AMP (many states)	PASS
659_bTo_pair	GAGE2A	23	49589529	49596827	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	2	0	FALSE	AMP (many states)	PASS
659_bTo_pair	GAGE2E	23	49341192	49345922	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	1	0	FALSE	AMP (many states)	PASS
659_bTo_pair	GAK	4	849276	932373	FALSE	272	-0.300029378244858	40	85877	1745020	0.308149309490068	3	1	0.308149309490068	3	1	1659143	2	29	32	4	FALSE	GAIN	PASS
659_bTo_pair	GAL	11	68683779	68691175	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	5	2	FALSE	GAIN	PASS
659_bTo_pair	GAL3ST1	22	30554635	30574587	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	7	0	FALSE	CNLOH	PASS
659_bTo_pair	GAL3ST2	2	241776825	241804208	FALSE	194	-0.588828356865968	23	240025214	241817025	0.186356639256811	1	0	0.186356639256811	1	0	1791811	1	34	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	GAL3ST3	11	66041952	66049180	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	6	1	FALSE	GAIN	PASS
659_bTo_pair	GAL3ST4	7	100159244	100168750	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	GALC	14	87837820	87993665	FALSE	870	-0.471399657488227	30	81180359	92000019	1	2	1	1	2	1	10819660	1	29	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	GALE	1	23795599	23800804	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	GALK1	17	75751594	75765711	FALSE	1076	-0.324328833861166	43	75741021	75776919	0.192136715055622	3	NA	0.192136715055622	3	NA	35898	NA	3	23	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	GALK2	15	49155656	49367869	FALSE	904	-0.666047806656427	20	44736698	49422632	0.365165917639896	1	0	0.365165917639896	1	0	4685934	1	30	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	GALM	2	38665910	38741237	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	7	2	FALSE	DIPLOID	PASS
659_bTo_pair	GALNS	16	88813734	88856970	FALSE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	GALNT1	18	35581117	35711834	FALSE	1095	-0.699288883997088	20	33734323	36718652	0.365165917639896	1	0	0.365165917639896	1	0	2984329	1	17	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	GALNT10	5	154190730	154420984	FALSE	351	-0.617975601907695	26	154002251	157057925	NA	2	NA	NA	2	NA	3055674	NA	15	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GALNT11	7	152025674	152122347	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	14	0	TRUE	HETLOSS	PASS
659_bTo_pair	GALNT12	9	98807699	98850081	FALSE	608	-0.541405085979946	27	95522076	99069752	1	2	1	1	2	1	3547676	1	31	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	GALNT13	2	153871913	154453849	FALSE	149	-0.454179855872301	30	147845197	157628657	1	2	1	1	2	1	9783460	1	30	14	2	FALSE	DIPLOID	PASS
659_bTo_pair	GALNT14	2	30910467	31155202	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	GALNT15	3	16174649	16231992	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	GALNT16	14	69259277	69357033	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	GALNT17	7	71132169	71713600	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	GALNT18	11	11270876	11622005	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	16	4	FALSE	DIPLOID	PASS
659_bTo_pair	GALNT2	1	230057990	230282124	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	17	1	FALSE	HETLOSS	PASS
659_bTo_pair	GALNT3	2	165747591	165794682	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	GALNT4	12	89519408	89524806	FALSE	794	-0.258431968401282	46	85301316	91178343	0.298322295679939	3	NA	0.298322295679939	3	NA	5877027	NA	19	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	GALNT5	2	157257598	157314211	FALSE	149	-0.454179855872301	30	147845197	157628657	1	2	1	1	2	1	9783460	1	30	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	GALNT6	12	51351247	51392867	FALSE	772	-0.61197679162419	26	50109466	51920864	NA	2	NA	NA	2	NA	1811398	NA	27	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GALNT7	4	173168753	173323967	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	GALNT8	12	4720341	4851927	FALSE	741	-0.251609480735115	44	4489790	6567957	0.345317016959666	3	1	0.345317016959666	3	1	2078167	2	28	20	3	FALSE	GAIN	PASS
659_bTo_pair	GALNT9	12	132196372	132329349	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	GALNTL5	7	151956379	152019934	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	GALNTL6	4	171812254	173041559	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	GALP	19	56176020	56185775	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	GALR1	18	77250549	77277896	FALSE	1113	-0.883471952658051	12	75410842	80247341	0.365165917639896	1	0	0.365165917639896	1	0	4836499	1	17	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	GALR2	17	76074794	76077541	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	GALR3	22	37823382	37825495	FALSE	1263	-0.528184158498335	29	36991204	37967644	NA	2	NA	NA	2	NA	976440	NA	31	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GALT	9	34638133	34651035	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	11	0	FALSE	CNLOH	PASS
659_bTo_pair	GAMT	19	1397026	1401570	FALSE	1116	-0.668595541323287	22	1229189	1605424	0.291335969972972	1	0	0.291335969972972	1	0	376235	1	21	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	GAN	16	81314947	81390884	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	GANAB	11	62624826	62646726	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	25	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	GANC	15	42273233	42356935	FALSE	898	-0.892191685906218	12	42081573	42681446	0.365165917639896	1	0	0.365165917639896	1	0	599873	1	13	27	6	FALSE	HETLOSS	PASS
659_bTo_pair	GAP43	3	115623324	115721490	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	6	0	FALSE	GAIN	PASS
659_bTo_pair	GAPDH	12	6533927	6538374	FALSE	741	-0.251609480735115	44	4489790	6567957	0.345317016959666	3	1	0.345317016959666	3	1	2078167	2	28	8	0	FALSE	GAIN	PASS
659_bTo_pair	GAPDHS	19	35533412	35545316	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	GAPT	5	58491435	58497090	FALSE	322	0.828661512211138	75	57481831	58494837	0.364342740527346	10	NA	0.364342740527346	10	NA	1013006	NA	3	3	0	TRUE	AMP	PASS
659_bTo_pair	GAPVD1	9	125261794	125367207	FALSE	619	-0.820686000870706	14	125203036	127778681	0.365165917639896	1	0	0.365165917639896	1	0	2575645	1	23	31	1	FALSE	HETLOSS	PASS
659_bTo_pair	GAR1	4	109815510	109824740	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	GAREM1	18	32124877	32470484	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	32	1	TRUE	GAIN	PASS
659_bTo_pair	GAREM2	2	26173091	26189663	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	GARNL3	9	127224265	127393660	FALSE	619	-0.820686000870706	14	125203036	127778681	0.365165917639896	1	0	0.365165917639896	1	0	2575645	1	23	29	0	FALSE	HETLOSS	PASS
659_bTo_pair	GARS	7	30594681	30634033	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	18	0	FALSE	GAIN	PASS
659_bTo_pair	GART	21	33503931	33543491	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	GAS1	9	86944363	86947189	FALSE	604	-0.547885090101936	27	85547201	90613824	1	2	1	1	2	1	5066623	1	21	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	GAS2	11	22625509	22813055	FALSE	688	2.07774434391802	105	22377723	22625852	0.364342740527346	28	NA	0.364342740527346	28	NA	248129	NA	3	10	1	TRUE	AMP	PASS
659_bTo_pair	GAS2L1	22	29306582	29312785	FALSE	1258	1.57338336560723	91	29268014	29310933	0.364342740527346	19	NA	0.364342740527346	19	NA	42919	NA	3	10	0	TRUE	AMP	PASS
659_bTo_pair	GAS2L2	17	35744511	35752878	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	15	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	GAS2L3	12	100573683	100628286	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	GAS6	13	113820549	113864067	FALSE	846	-0.38711803760524	39	113325636	114000814	NA	2	NA	NA	2	NA	675178	NA	11	17	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GAS7	17	9910609	10198551	FALSE	1006	-0.894220729735546	12	8370429	10825247	0.365165917639896	1	0	0.365165917639896	1	0	2454818	1	31	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	GAS8	16	90019629	90044975	FALSE	995	-0.522225769981002	29	89949539	90075863	NA	2	NA	NA	2	NA	126324	NA	5	13	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GAST	17	41712326	41715969	FALSE	1036	-0.764029118419186	19	41624551	42193564	0.365165917639896	1	0	0.365165917639896	1	0	569013	1	25	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	GATA1	23	48786554	48794311	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	9	0	FALSE	AMP (many states)	PASS
659_bTo_pair	GATA2	3	128479427	128493185	FALSE	239	1.8141623137475	100	128463212	128493142	0.364342740527346	23	NA	0.364342740527346	23	NA	29930	NA	2	26	3	FALSE	AMP	PASS
659_bTo_pair	GATA3	10	8045378	8075203	TRUE	635	0.607125994804727	71	7964121	8075110	0.364342740527346	8	NA	0.364342740527346	8	NA	110989	NA	2	27	2	FALSE	INDETERMINATE	PASS
659_bTo_pair	GATA4	8	11676959	11760002	FALSE	517	1.67621881837746	96	11677022	11760048	0.364342740527346	21	NA	0.364342740527346	21	NA	83026	NA	1	21	3	FALSE	AMP	PASS
659_bTo_pair	GATA5	20	62463497	62475970	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	GATA6	18	22169443	22202528	FALSE	1090	2.15562571555143	107	22169605	22202537	0.364342740527346	30	NA	0.364342740527346	30	NA	32932	NA	1	19	2	FALSE	AMP	PASS
659_bTo_pair	GATAD1	7	92447448	92459432	FALSE	479	-0.448308050861149	30	87602941	92590330	1	2	1	1	2	1	4987389	1	30	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	GATAD2A	19	19385826	19508931	FALSE	1161	-0.292613860626304	46	19182590	19465611	0.298322295679939	3	NA	0.298322295679939	3	NA	283021	NA	10	14	0	TRUE	GAIN (many states)	PASS
659_bTo_pair	GATAD2B	1	153789030	153923360	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	GATB	4	151670504	151761023	FALSE	301	-0.768516841937588	19	151174942	151760928	0.365165917639896	1	0	0.365165917639896	1	0	585986	1	4	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	GATC	12	120446438	120463749	FALSE	810	-0.438737881374958	34	120127967	120903912	NA	2	NA	NA	2	NA	775945	NA	20	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GATD1	11	767220	777488	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	GATD3A	21	44133605	44210114	FALSE	1234	-0.544212636077936	27	41740855	44141314	1	2	1	1	2	1	2400459	1	31	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	GATM	15	45361124	45402327	FALSE	904	-0.666047806656427	20	44736698	49422632	0.365165917639896	1	0	0.365165917639896	1	0	4685934	1	30	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	GBA	1	155234452	155244699	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	GBA2	9	35736866	35749228	FALSE	591	0.73474920581053	74	35684233	36036976	0.364342740527346	9	NA	0.364342740527346	9	NA	352743	NA	17	21	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	GBE1	3	81489699	81762161	FALSE	232	-0.785224171872638	14	72888305	88156485	0.365165917639896	1	0	0.365165917639896	1	0	15268180	1	18	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	GBF1	10	102245532	102382899	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	41	0	FALSE	CNLOH	PASS
659_bTo_pair	GBGT1	9	133152948	133163945	FALSE	627	-0.867007674319489	12	132986776	134157867	0.365165917639896	1	0	0.365165917639896	1	0	1171091	1	28	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	GBP1	1	89052319	89065360	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	GBP2	1	89106132	89150456	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	20	3	FALSE	DIPLOID	PASS
659_bTo_pair	GBP3	1	89006666	89022894	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	14	2	FALSE	DIPLOID	PASS
659_bTo_pair	GBP4	1	89181148	89198932	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	GBP5	1	89258950	89272804	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	GBP6	1	89364058	89386461	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	GBP7	1	89131751	89176040	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	13	2	FALSE	DIPLOID	PASS
659_bTo_pair	GBX1	7	151148589	151174745	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	GBX2	2	236165236	236168369	FALSE	189	-0.580904316133535	23	233779383	236380649	0.186356639256811	1	0	0.186356639256811	1	0	2601266	1	10	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	GC	4	71741693	71804041	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	13	2	FALSE	DIPLOID	PASS
659_bTo_pair	GCA	2	162318840	162371595	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	10	3	FALSE	DIPLOID	PASS
659_bTo_pair	GCAT	22	37807905	37817176	FALSE	1263	-0.528184158498335	29	36991204	37967644	NA	2	NA	NA	2	NA	976440	NA	31	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GCC1	7	127580618	127593611	FALSE	492	-0.463656181520944	30	126439208	129166764	1	2	1	1	2	1	2727556	1	27	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	GCC2	2	108448561	108509415	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	33	3	FALSE	DIPLOID	PASS
659_bTo_pair	GCDH	19	12891026	12914207	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	GCFC2	2	75652000	75710989	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	24	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GCG	2	162142873	162152404	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	GCGR	17	81804132	81814013	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	GCH1	14	54842008	54902852	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	GCHFR	15	40764020	40767710	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	GCK	7	44144271	44198170	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	14	0	FALSE	GAIN	PASS
659_bTo_pair	GCKR	2	27496842	27523684	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	GCLC	6	53497341	53616970	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	GCLM	1	93885205	93909456	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	GCM1	6	53126964	53148829	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	GCM2	6	10873223	10881941	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	GCN1	12	120127203	120194710	FALSE	810	-0.438737881374958	34	120127967	120903912	NA	2	NA	NA	2	NA	775945	NA	20	62	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GCNA	23	71578411	71613583	FALSE	1317	0.217996879888221	62	71533297	76176924	0.364342740527346	5	NA	0.364342740527346	5	NA	4643627	NA	35	16	0	FALSE	AMP (many states)	PASS
659_bTo_pair	GCNT1	9	76419850	76651203	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	GCNT2	6	10492223	10629368	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	GCNT3	15	59594875	59640239	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	GCNT4	5	75025346	75030899	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	GCNT7	20	56491492	56525925	FALSE	1221	-0.44936578355072	34	56249153	58715213	NA	2	NA	NA	2	NA	2466060	NA	27	12	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GCOM1	15	57591908	57714745	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	20	3	FALSE	HETLOSS	PASS
659_bTo_pair	GCSAM	3	112120841	112133305	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	7	0	FALSE	GAIN	PASS
659_bTo_pair	GCSAML	1	247507058	247577690	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	GCSAML-AS1	1	247524679	247532613	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	GCSH	16	81081938	81096425	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	GDA	9	72114595	72257193	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	15	3	FALSE	DIPLOID	PASS
659_bTo_pair	GDAP1	8	74321130	74488872	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	8	1	FALSE	GAIN	PASS
659_bTo_pair	GDAP1L1	20	44247099	44280917	FALSE	1210	-0.476296426145969	34	43513997	45110019	NA	2	NA	NA	2	NA	1596022	NA	26	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GDAP2	1	117863485	117929630	FALSE	43	-0.890933866500247	13	117628427	119906570	0.365165917639896	1	0	0.365165917639896	1	0	2278143	1	13	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	GDE1	16	19501689	19522145	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	GDF1	19	18868545	18896096	FALSE	1159	-0.165917001507678	49	18177228	19138502	0.365165917639896	3	1	0.365165917639896	3	1	961274	2	36	13	2	FALSE	GAIN	PASS
659_bTo_pair	GDF10	10	47300386	47313547	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	7	0	FALSE	CNLOH	PASS
659_bTo_pair	GDF11	12	55743280	55757278	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	GDF15	19	18374731	18389176	FALSE	1159	-0.165917001507678	49	18177228	19138502	0.365165917639896	3	1	0.365165917639896	3	1	961274	2	36	5	0	FALSE	GAIN	PASS
659_bTo_pair	GDF2	10	47322490	47326270	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	5	0	FALSE	CNLOH	PASS
659_bTo_pair	GDF3	12	7689782	7695776	FALSE	745	-0.243574834353832	44	6965649	8175835	0.345317016959666	3	1	0.345317016959666	3	1	1210186	2	26	6	0	FALSE	GAIN	PASS
659_bTo_pair	GDF5	20	35433347	35454746	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	GDF6	8	96142330	96160792	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	6	0	FALSE	GAIN	PASS
659_bTo_pair	GDF7	2	20666664	20679245	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	6	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GDF9	5	132861181	132866884	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	GDI1	23	154436913	154443467	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	11	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	GDI2	10	5765223	5842132	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	11	1	FALSE	CNLOH	PASS
659_bTo_pair	GDNF	5	37812677	37839686	FALSE	314	-0.173277106490387	51	35904615	38924434	0.365165917639896	3	NA	0.365165917639896	3	NA	3019819	NA	16	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	GDPD1	17	59220467	59275967	FALSE	1058	-0.423419268198233	34	58422367	59890994	NA	2	NA	NA	2	NA	1468627	NA	20	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GDPD2	23	70423031	70433390	FALSE	1311	0.0481524733197309	56	68048478	70452009	0.365165917639896	4	NA	0.365165917639896	4	NA	2403531	NA	19	15	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	GDPD3	16	30104810	30113856	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	GDPD4	11	77216558	77301687	FALSE	710	-0.314972965919996	43	76659622	77285059	0.192136715055622	3	NA	0.192136715055622	3	NA	625437	NA	8	16	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	GDPD5	11	75434640	75525903	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	17	0	FALSE	GAIN	PASS
659_bTo_pair	GDPGP1	15	90233808	90245811	FALSE	927	-0.86531749998723	13	90191956	90642068	0.365165917639896	1	0	0.365165917639896	1	0	450112	1	11	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	GEM	8	94249253	94262350	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	6	0	FALSE	GAIN	PASS
659_bTo_pair	GEMIN2	14	39114223	39136973	FALSE	858	-0.388807455224718	39	37680254	45134449	NA	2	NA	NA	2	NA	7454195	NA	16	10	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GEMIN4	17	744414	753999	FALSE	996	-0.883704003468192	13	148164	1298296	0.365165917639896	1	0	0.365165917639896	1	0	1150132	1	14	14	2	FALSE	HETLOSS	PASS
659_bTo_pair	GEMIN5	5	154887416	154938209	FALSE	351	-0.617975601907695	26	154002251	157057925	NA	2	NA	NA	2	NA	3055674	NA	15	30	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GEMIN6	2	38751534	38785000	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	GEMIN7	19	45079195	45091524	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	GEMIN8	23	14008279	14029893	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	5	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	GEN1	2	17753858	17788941	FALSE	94	1.41748307855289	88	17753961	17788974	0.364342740527346	17	NA	0.364342740527346	17	NA	35013	NA	2	38	0	FALSE	AMP	PASS
659_bTo_pair	GET4	7	876552	896436	FALSE	450	-0.329551508654045	40	193185	2379492	0.308149309490068	3	1	0.308149309490068	3	1	2186307	2	26	9	1	FALSE	GAIN	PASS
659_bTo_pair	GFAP	17	44903161	44916937	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	18	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GFER	16	1984207	1987749	FALSE	938	-0.541386594301884	29	1947002	2038739	NA	2	NA	NA	2	NA	91737	NA	11	4	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GFI1	1	92474762	92486876	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	GFI1B	9	132944000	132991687	FALSE	626	1.22221247791504	84	132891094	132947245	0.364342740527346	14	NA	0.364342740527346	14	NA	56151	NA	2	12	1	TRUE	AMP	PASS
659_bTo_pair	GFM1	3	158644278	158692575	FALSE	250	-0.231905273142314	46	156829339	161250770	0.298322295679939	3	NA	0.298322295679939	3	NA	4421431	NA	26	25	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	GFM2	5	74721204	74767371	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	GFOD1	6	13357830	13487662	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	GFOD2	16	67674531	67719421	FALSE	979	-0.429457644119204	34	67645299	68698317	NA	2	NA	NA	2	NA	1053018	NA	33	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GFPT1	2	69319769	69387254	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	GFPT2	5	180300690	180353387	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	19	1	FALSE	HETLOSS	PASS
659_bTo_pair	GFRA1	10	116056925	116273467	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	13	0	FALSE	CNLOH	PASS
659_bTo_pair	GFRA2	8	21690403	21812357	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	GFRA3	5	138252379	138274671	FALSE	336	-0.752536733071469	19	135941639	138575278	0.365165917639896	1	0	0.365165917639896	1	0	2633639	1	24	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	GFRA4	20	3659292	3663399	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	GFRAL	6	55327469	55402493	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	GFY	19	49423749	49428818	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	GGA1	22	37608475	37633564	FALSE	1263	-0.528184158498335	29	36991204	37967644	NA	2	NA	NA	2	NA	976440	NA	31	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GGA2	16	23463542	23521995	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	GGA3	17	75236599	75262363	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	GGACT	13	100530164	100589528	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	2	0	FALSE	CNLOH	PASS
659_bTo_pair	GGCT	7	30496621	30504844	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	5	1	FALSE	GAIN	PASS
659_bTo_pair	GGCX	2	85544723	85561547	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	GGH	8	63015079	63039171	FALSE	550	-0.186881774239562	48	60208949	67746087	0.365165917639896	3	NA	0.365165917639896	3	NA	7537138	NA	33	9	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	GGN	19	38384265	38388082	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	GGNBP2	17	36544888	36589848	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	15	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	GGPS1	1	235327350	235344532	FALSE	82	-0.550278310688863	27	235196044	241494870	1	2	1	1	2	1	6298826	1	22	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	GGT1	22	24583750	24629005	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	19	0	FALSE	CNLOH	PASS
659_bTo_pair	GGT2	22	21207973	21227637	FALSE	1246	-0.481954888210425	34	21001894	21693896	NA	2	NA	NA	2	NA	692002	NA	14	8	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GGT5	22	24219654	24245142	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	15	2	FALSE	CNLOH	PASS
659_bTo_pair	GGT6	17	4556927	4560818	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	GGT7	20	34844720	34872860	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	GGTLC1	20	23985050	23988779	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	GGTLC2	22	22644475	22647903	FALSE	1248	-0.440655178794865	34	21923114	22646364	NA	2	NA	NA	2	NA	723250	NA	7	5	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	GGTLC3	22	18516344	18518161	FALSE	1240	-0.594689860601271	26	15528179	18606839	NA	2	NA	NA	2	NA	3078660	NA	21	1	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GH1	17	63917200	63918838	FALSE	1065	0.610950559170025	71	63880340	63941272	0.364342740527346	8	NA	0.364342740527346	8	NA	60932	NA	7	5	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	GH2	17	63880215	63881935	FALSE	1065	0.610950559170025	71	63880340	63941272	0.364342740527346	8	NA	0.364342740527346	8	NA	60932	NA	7	6	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	GHDC	17	42188799	42194532	FALSE	1036	-0.764029118419186	19	41624551	42193564	0.365165917639896	1	0	0.365165917639896	1	0	569013	1	25	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	GHITM	10	84139440	84153245	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	8	0	FALSE	CNLOH	PASS
659_bTo_pair	GHR	5	42423777	42721878	FALSE	316	-0.143574193475256	49	39021030	43704252	0.365165917639896	3	1	0.365165917639896	3	1	4683222	2	28	13	4	FALSE	GAIN	PASS
659_bTo_pair	GHRH	20	37251082	37261835	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	GHRHR	7	30938669	30993254	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	13	0	FALSE	GAIN	PASS
659_bTo_pair	GHRL	3	10285675	10292947	FALSE	199	-1.0441448018759	8	10200366	12187515	0.342391532111247	0	0	0.342391532111247	0	0	1987149	0	14	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	GHSR	3	172445133	172448456	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	6	0	FALSE	GAIN	PASS
659_bTo_pair	GID4	17	18039292	18068404	FALSE	1015	1.90283294807364	101	18028570	18068396	0.364342740527346	25	NA	0.364342740527346	25	NA	39826	NA	2	20	0	FALSE	AMP	PASS
659_bTo_pair	GID8	20	62938119	62948475	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	GIF	11	59829268	59845501	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	9	0	FALSE	GAIN	PASS
659_bTo_pair	GIGYF1	7	100679507	100694037	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	23	1	FALSE	HETLOSS	PASS
659_bTo_pair	GIGYF2	2	232697299	232860575	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	33	5	FALSE	DIPLOID	PASS
659_bTo_pair	GIMAP1	7	150716557	150724284	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	GIMAP1-GIMAP5	7	150716668	150743646	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	11	3	FALSE	HETLOSS	PASS
659_bTo_pair	GIMAP2	7	150685697	150693641	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	GIMAP4	7	150567277	150573955	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	GIMAP5	7	150722253	150750033	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	6	3	FALSE	HETLOSS	PASS
659_bTo_pair	GIMAP6	7	150625375	150632648	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	GIMAP7	7	150514830	150521073	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	4	2	FALSE	HETLOSS	PASS
659_bTo_pair	GIMAP8	7	150450630	150479392	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	10	2	FALSE	HETLOSS	PASS
659_bTo_pair	GIMD1	4	106357485	106368825	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	GIN1	5	103086000	103120151	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	GINM1	6	149566294	149591748	FALSE	431	-0.504239059693729	30	143136912	149638436	1	2	1	1	2	1	6501524	1	29	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	GINS1	20	25407727	25452628	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	GINS2	16	85676198	85690073	FALSE	987	-0.578642888038652	23	81999201	85806436	0.186356639256811	1	0	0.186356639256811	1	0	3807235	1	31	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	GINS3	16	58295080	58406144	FALSE	972	-0.499158643645776	34	57931773	64947842	NA	2	NA	NA	2	NA	7016069	NA	18	3	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GINS4	8	41529206	41545046	FALSE	536	-0.812766686991614	14	38512585	41896345	0.365165917639896	1	0	0.365165917639896	1	0	3383760	1	19	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	GIP	17	48958554	48968596	FALSE	1051	-0.636429062465303	26	48785033	49576193	NA	2	NA	NA	2	NA	791160	NA	15	5	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GIPC1	19	14477760	14496149	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	GIPC2	1	77979542	78138449	FALSE	27	-0.365760579101575	39	77969065	85252731	NA	2	NA	NA	2	NA	7283666	NA	23	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GIPC3	19	3585553	3593541	FALSE	1122	-0.653400653967241	21	3157829	4037863	0.140309795179477	0	0	0.140309795179477	0	0	880034	0	27	7	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	GIPR	19	45668244	45683724	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	13	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	GIT1	17	29573469	29594054	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	22	1	FALSE	DIPLOID	PASS
659_bTo_pair	GIT2	12	109929792	109996389	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	GJA1	6	121435577	121449727	FALSE	421	-0.534093125771784	29	117482879	126348569	NA	2	NA	NA	2	NA	8865690	NA	29	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GJA10	6	89894469	89921760	FALSE	409	-0.443147941484883	34	89098919	90586786	NA	2	NA	NA	2	NA	1487867	NA	13	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GJA3	13	20138255	20161049	FALSE	819	-0.883807164728579	13	19173884	20902691	0.365165917639896	1	0	0.365165917639896	1	0	1728807	1	14	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	GJA4	1	34792998	34795747	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	GJA5	1	147756199	147773362	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	GJA8	1	147907956	147909257	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	GJA9	1	38874451	38881587	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	GJA9-MYCBP	1	38864501	38881617	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	GJB1	23	71215194	71225516	FALSE	1314	1.60568530066658	93	71113596	71254970	0.364342740527346	19	NA	0.364342740527346	19	NA	141374	NA	4	4	0	FALSE	AMP	PASS
659_bTo_pair	GJB2	13	20187463	20193010	FALSE	819	-0.883807164728579	13	19173884	20902691	0.365165917639896	1	0	0.365165917639896	1	0	1728807	1	14	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	GJB3	1	34781189	34786369	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	GJB4	1	34759741	34763724	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	GJB5	1	34755047	34758512	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	GJB6	13	20221962	20232395	FALSE	819	-0.883807164728579	13	19173884	20902691	0.365165917639896	1	0	0.365165917639896	1	0	1728807	1	14	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	GJB7	6	87282978	87329278	FALSE	406	1.66385523338017	96	87152763	87284854	0.364342740527346	20	NA	0.364342740527346	20	NA	132091	NA	2	3	2	FALSE	AMP	PASS
659_bTo_pair	GJC1	17	44798448	44830816	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GJC2	1	228149852	228159826	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	GJC3	7	99923269	99929620	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	GJD2	15	34751032	34754965	FALSE	890	-0.864832779596883	13	34359248	37966686	0.365165917639896	1	0	0.365165917639896	1	0	3607438	1	12	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	GJD3	17	40362931	40363815	FALSE	1032	0.021285439110795	56	40363122	40620051	0.365165917639896	4	NA	0.365165917639896	4	NA	256929	NA	5	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	GJD4	10	35605410	35608935	FALSE	640	-0.421497241268382	32	32269100	43094667	0.365165917639896	2	0	0.365165917639896	2	0	10825567	2	20	5	0	FALSE	CNLOH	PASS
659_bTo_pair	GJE1	6	142133090	142135151	FALSE	429	-0.412609995390511	39	138092232	142443520	NA	2	NA	NA	2	NA	4351288	NA	18	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GK	23	30653359	30731456	FALSE	1282	-0.198839212217093	48	28789325	33339312	0.365165917639896	3	NA	0.365165917639896	3	NA	4549987	NA	11	21	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	GK2	4	79406352	79408293	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	GK5	3	142157527	142225607	FALSE	246	-0.322519280750539	43	139344000	142447976	0.192136715055622	3	NA	0.192136715055622	3	NA	3103976	NA	19	16	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	GKAP1	9	83739421	83829516	FALSE	598	-0.546497547865564	29	78236395	83956411	NA	2	NA	NA	2	NA	5720016	NA	14	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GKN1	2	68974573	68980974	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	GKN2	2	68945232	68952970	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	GLA	23	101397803	101408012	FALSE	1321	0.439394403838451	66	101391440	103377786	0.364342740527346	7	NA	0.364342740527346	7	NA	1986346	NA	34	8	2	FALSE	INDETERMINATE	PASS
659_bTo_pair	GLB1	3	32996608	33097230	FALSE	209	-0.637968449787088	26	31990360	37328493	NA	2	NA	NA	2	NA	5338133	NA	26	25	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GLB1L	2	219236606	219245478	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	GLB1L2	11	134331874	134378341	FALSE	734	-0.516486951202814	27	128842412	134387591	1	2	1	1	2	1	5545179	1	27	20	1	FALSE	DIPLOID	PASS
659_bTo_pair	GLB1L3	11	134274245	134319564	FALSE	734	-0.516486951202814	27	128842412	134387591	1	2	1	1	2	1	5545179	1	27	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	GLCCI1	7	7968794	8094272	FALSE	456	-0.240618790532325	45	6028682	12688782	0.279823559258657	3	0	0.279823559258657	3	0	6660100	3	32	10	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	GLCE	15	69160584	69272217	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	10	2	FALSE	HETLOSS	PASS
659_bTo_pair	GLDC	9	6532464	6645783	FALSE	579	-0.757785700087963	19	5656721	7798588	0.365165917639896	1	0	0.365165917639896	1	0	2141867	1	11	26	1	FALSE	HETLOSS	PASS
659_bTo_pair	GLDN	15	51341629	51408013	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	12	2	FALSE	HETLOSS	PASS
659_bTo_pair	GLE1	9	128504700	128542288	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	18	2	FALSE	HETLOSS	PASS
659_bTo_pair	GLG1	16	74447427	74607144	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	29	1	FALSE	DIPLOID	PASS
659_bTo_pair	GLI1	12	57460135	57472262	FALSE	781	1.78267566021262	98	57459894	57472057	0.364342740527346	22	NA	0.364342740527346	22	NA	12163	NA	1	20	0	FALSE	AMP	PASS
659_bTo_pair	GLI2	2	120735623	120992653	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	28	0	FALSE	DIPLOID	PASS
659_bTo_pair	GLI3	7	41960950	42237870	FALSE	462	1.80572810289192	98	41685074	41966398	0.364342740527346	23	NA	0.364342740527346	23	NA	281324	NA	2	25	0	TRUE	AMP	PASS
659_bTo_pair	GLI4	8	143267433	143276931	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	GLIPR1	12	75480680	75503853	FALSE	792	-0.349776929755415	43	71610399	76348235	0.192136715055622	3	NA	0.192136715055622	3	NA	4737836	NA	18	10	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	GLIPR1L1	12	75334639	75370560	FALSE	792	-0.349776929755415	43	71610399	76348235	0.192136715055622	3	NA	0.192136715055622	3	NA	4737836	NA	18	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	GLIPR1L2	12	75391070	75432688	FALSE	792	-0.349776929755415	43	71610399	76348235	0.192136715055622	3	NA	0.192136715055622	3	NA	4737836	NA	18	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	GLIPR2	9	36136536	36163913	FALSE	592	-0.0369931589847324	55	36052313	36828293	0.328696605851359	4	NA	0.328696605851359	4	NA	775980	NA	7	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	GLIS1	1	53506237	53738106	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	GLIS2	16	4314761	4339597	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	GLIS3	9	3824127	4348392	FALSE	574	-0.919846303005392	13	2198627	4849539	0.365165917639896	1	0	0.365165917639896	1	0	2650912	1	11	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	GLMN	1	92246402	92298987	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	GLMP	1	156290089	156295689	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	GLO1	6	38675925	38703141	FALSE	397	-0.509151429367598	27	37213022	41687167	1	2	1	1	2	1	4474145	1	33	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	GLOD4	17	757097	783390	FALSE	996	-0.883704003468192	13	148164	1298296	0.365165917639896	1	0	0.365165917639896	1	0	1150132	1	14	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	GLOD5	23	48761750	48773648	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	4	1	FALSE	AMP (many states)	PASS
659_bTo_pair	GLP1R	6	39048798	39087743	FALSE	397	-0.509151429367598	27	37213022	41687167	1	2	1	1	2	1	4474145	1	33	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	GLP2R	17	9822206	9892102	FALSE	1006	-0.894220729735546	12	8370429	10825247	0.365165917639896	1	0	0.365165917639896	1	0	2454818	1	31	14	3	FALSE	HETLOSS	PASS
659_bTo_pair	GLRA1	5	151822513	151924842	FALSE	350	-0.819899512516675	16	150444373	153997804	0.365165917639896	1	0	0.365165917639896	1	0	3553431	1	25	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	GLRA2	23	14529298	14731812	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	12	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	GLRA3	4	174636914	174829314	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	GLRA4	23	103707224	103728655	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	14	1	FALSE	AMP (many states)	PASS
659_bTo_pair	GLRB	4	157076057	157172090	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	GLRX	5	95751319	95823005	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	GLRX2	1	193090866	193106114	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	6	0	TRUE	DIPLOID	PASS
659_bTo_pair	GLRX3	10	130136399	130184521	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	11	0	FALSE	CNLOH	PASS
659_bTo_pair	GLRX5	14	95533503	95544724	FALSE	874	-0.38394723851277	39	95191724	95543957	NA	2	NA	NA	2	NA	352233	NA	3	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GLS	2	190880827	190965552	FALSE	161	-0.46057869782823	30	190057617	197310624	1	2	1	1	2	1	7253007	1	23	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	GLS2	12	56470944	56488414	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	19	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GLT1D1	12	128853427	128984968	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	GLT6D1	9	135623656	135639540	FALSE	629	-0.955558414525678	9	134750808	136485014	0.291955377254426	0	0	0.291955377254426	0	0	1734206	0	30	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	GLT8D1	3	52694488	52706032	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	GLT8D2	12	103988984	104064183	FALSE	798	-0.492720037723834	34	102839233	105367537	NA	2	NA	NA	2	NA	2528304	NA	20	9	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GLTP	12	109850943	109880488	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	GLTPD2	17	4788959	4790390	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	GLUD1	10	87050486	87094866	FALSE	656	-0.313191165123093	43	86936767	87862427	0.192136715055622	3	NA	0.192136715055622	3	NA	925660	NA	12	15	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	GLUD2	23	121047588	121050080	FALSE	1328	0.070674287613007	59	119603543	121049335	0.308533751035793	5	NA	0.308533751035793	5	NA	1445792	NA	34	7	0	FALSE	AMP (many states)	PASS
659_bTo_pair	GLUL	1	182381704	182392206	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	GLYAT	11	58640426	58731974	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	6	1	FALSE	GAIN	PASS
659_bTo_pair	GLYATL1	11	58905398	59043527	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	9	1	FALSE	GAIN	PASS
659_bTo_pair	GLYATL1B	11	59086307	59094786	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	6	1	FALSE	GAIN	PASS
659_bTo_pair	GLYATL2	11	58834065	58904215	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	6	1	FALSE	GAIN	PASS
659_bTo_pair	GLYATL3	6	49499958	49527047	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	6	3	FALSE	DIPLOID	PASS
659_bTo_pair	GLYCTK	3	52287089	52293476	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	GLYR1	16	4803203	4847342	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	GM2A	5	151212150	151270440	FALSE	350	-0.819899512516675	16	150444373	153997804	0.365165917639896	1	0	0.365165917639896	1	0	3553431	1	25	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	GMCL1	2	69829642	69881396	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	GMCL2	5	178184503	178187432	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	7	2	FALSE	HETLOSS	PASS
659_bTo_pair	GMDS	6	1623806	2245692	FALSE	366	-0.56930463675583	26	486737	3019480	NA	2	NA	NA	2	NA	2532743	NA	12	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GMEB1	1	28668732	28719353	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	GMEB2	20	63587602	63627041	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	GMFB	14	54474484	54489196	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	GMFG	19	39328353	39342372	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	GMIP	19	19629476	19643667	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	24	1	FALSE	AMP (many states)	PASS
659_bTo_pair	GML	8	142834247	142916506	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	22	5	FALSE	DIPLOID	PASS
659_bTo_pair	GMNC	3	190852877	190892429	FALSE	269	-0.263219948753545	44	189957970	195888442	0.345317016959666	3	1	0.345317016959666	3	1	5930472	2	31	7	1	FALSE	GAIN	PASS
659_bTo_pair	GMNN	6	24774931	24786099	FALSE	373	-0.695027086668472	22	24174718	26017145	0.291335969972972	1	0	0.291335969972972	1	0	1842427	1	23	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	GMPPA	2	219498867	219506989	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	GMPPB	3	49716844	49723951	FALSE	220	-0.761977046834943	19	49697158	49862323	0.365165917639896	1	0	0.365165917639896	1	0	165165	1	9	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	GMPR	6	16238580	16295549	FALSE	370	-0.377368469329801	39	15246548	20212233	NA	2	NA	NA	2	NA	4965685	NA	18	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GMPR2	14	24232422	24239242	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	GMPS	3	155870536	155944026	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	16	1	FALSE	GAIN	PASS
659_bTo_pair	GNA11	19	3094410	3124004	FALSE	1121	1.82432152123154	100	3094339	3155904	0.364342740527346	23	NA	0.364342740527346	23	NA	61565	NA	2	18	6	FALSE	AMP	PASS
659_bTo_pair	GNA12	7	2728112	2844324	FALSE	451	-0.380727397700309	39	2432806	2844144	NA	2	NA	NA	2	NA	411338	NA	8	12	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GNA13	17	65010715	65056839	FALSE	1067	1.85007015586096	100	64859710	65056569	0.364342740527346	24	NA	0.364342740527346	24	NA	196859	NA	2	21	0	FALSE	AMP	PASS
659_bTo_pair	GNA14	9	77423079	77648307	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	GNA15	19	3136193	3163769	FALSE	1121	1.82432152123154	100	3094339	3155904	0.364342740527346	23	NA	0.364342740527346	23	NA	61565	NA	2	8	1	TRUE	AMP	PASS
659_bTo_pair	GNAI1	7	79768028	80226181	FALSE	472	-0.726204175046439	19	80135196	80656534	0.365165917639896	1	0	0.365165917639896	1	0	521338	1	3	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	GNAI2	3	50226292	50259355	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	GNAI3	1	109548611	109618321	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	16	2	FALSE	HETLOSS	PASS
659_bTo_pair	GNAL	18	11688956	11885685	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	19	0	FALSE	GAIN	PASS
659_bTo_pair	GNAO1	16	56191347	56357457	FALSE	968	-0.505434692233225	30	51151209	56683230	1	2	1	1	2	1	5532021	1	34	10	2	FALSE	DIPLOID	PASS
659_bTo_pair	GNAQ	9	77716087	78031458	FALSE	597	2.09504572903986	105	77716122	78031617	0.364342740527346	29	NA	0.364342740527346	29	NA	315495	NA	1	27	0	FALSE	AMP	PASS
659_bTo_pair	GNAS	20	58839718	58911192	FALSE	1222	1.65947462738514	96	58839812	58911205	0.364342740527346	20	NA	0.364342740527346	20	NA	71393	NA	1	45	5	FALSE	AMP	PASS
659_bTo_pair	GNAT1	3	50191612	50196516	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	GNAT2	1	109603267	109619929	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	8	2	FALSE	HETLOSS	PASS
659_bTo_pair	GNAT3	7	80458671	80512020	FALSE	472	-0.726204175046439	19	80135196	80656534	0.365165917639896	1	0	0.365165917639896	1	0	521338	1	3	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	GNAZ	22	23070361	23125037	FALSE	1250	-0.793141417924499	16	22896030	23161569	0.365165917639896	1	0	0.365165917639896	1	0	265539	1	4	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	GNB1	1	1785285	1891117	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	GNB1L	22	19783224	19854939	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	13	1	FALSE	CNLOH	PASS
659_bTo_pair	GNB2	7	100673531	100679174	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	GNB3	12	6839954	6847393	FALSE	743	-0.145896859645485	51	6620180	6938488	0.365165917639896	3	NA	0.365165917639896	3	NA	318308	NA	20	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	GNB4	3	179396089	179451590	FALSE	253	-0.302573270656947	43	179243074	180989661	0.192136715055622	3	NA	0.192136715055622	3	NA	1746587	NA	13	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	GNB5	15	52115105	52191369	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	GNE	9	36214441	36277056	FALSE	592	-0.0369931589847324	55	36052313	36828293	0.328696605851359	4	NA	0.328696605851359	4	NA	775980	NA	7	15	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	GNG10	9	111661335	111670246	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	GNG11	7	93921699	93928610	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	GNG12	1	67701466	67833467	FALSE	23	-0.326404897444941	43	65224778	71080923	0.192136715055622	3	NA	0.192136715055622	3	NA	5856145	NA	29	2	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	GNG13	16	798041	800733	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	2	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	GNG14	19	12687998	12688422	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	GNG2	14	51826195	51979342	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	GNG3	11	62707658	62709201	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	2	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	GNG4	1	235547687	235650754	FALSE	82	-0.550278310688863	27	235196044	241494870	1	2	1	1	2	1	6298826	1	22	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	GNG5	1	84498325	84506565	FALSE	27	-0.365760579101575	39	77969065	85252731	NA	2	NA	NA	2	NA	7283666	NA	23	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GNG7	19	2511219	2702709	FALSE	1120	-0.63588318052236	23	2233887	3062886	0.186356639256811	1	0	0.186356639256811	1	0	828999	1	28	2	1	FALSE	HETLOSS	PASS
659_bTo_pair	GNG8	19	46634076	46634685	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	2	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	GNGT1	7	93591573	93911265	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	GNGT2	17	49202791	49210574	FALSE	1051	-0.636429062465303	26	48785033	49576193	NA	2	NA	NA	2	NA	791160	NA	15	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GNL1	6	30541377	30557174	FALSE	379	-0.524744136561063	27	30546321	31270541	1	2	1	1	2	1	724220	1	30	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	GNL2	1	37566816	37595935	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	GNL3	3	52681156	52694492	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	17	4	FALSE	HETLOSS	PASS
659_bTo_pair	GNL3L	23	54530211	54561071	FALSE	1303	0.0232492223836125	56	53426353	57488811	0.365165917639896	4	NA	0.365165917639896	4	NA	4062458	NA	32	16	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	GNLY	2	85685175	85698854	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	GNMT	6	42960758	42963880	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	GNPAT	1	231241207	231277973	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	16	1	FALSE	HETLOSS	PASS
659_bTo_pair	GNPDA1	5	141991749	142013041	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	6	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GNPDA2	4	44682200	44726595	FALSE	282	-0.204234033978701	47	41752697	49032685	0.365165917639896	3	1	0.365165917639896	3	1	7279988	2	31	19	1	FALSE	GAIN	PASS
659_bTo_pair	GNPNAT1	14	52775194	52791668	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	GNPTAB	12	101745497	101830938	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	26	0	FALSE	DIPLOID	PASS
659_bTo_pair	GNPTG	16	1351923	1364113	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	8	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	GNRH1	8	25419260	25424654	FALSE	520	-0.862302460890099	13	23703081	26040940	0.365165917639896	1	0	0.365165917639896	1	0	2337859	1	12	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	GNRH2	20	3043622	3045747	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	GNRHR	4	67739328	67754360	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	GNS	12	64713445	64759447	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	GOLGA1	9	124878357	124948492	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	21	2	FALSE	HETLOSS	PASS
659_bTo_pair	GOLGA2	9	128255829	128275995	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	26	4	FALSE	HETLOSS	PASS
659_bTo_pair	GOLGA3	12	132768909	132828858	FALSE	818	-0.324030199616913	43	132687628	133234369	0.192136715055622	3	NA	0.192136715055622	3	NA	546741	NA	14	31	4	FALSE	GAIN (many states)	PASS
659_bTo_pair	GOLGA4	3	37243177	37366751	FALSE	209	-0.637968449787088	26	31990360	37328493	NA	2	NA	NA	2	NA	5338133	NA	26	42	1	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	GOLGA5	14	92794231	92839963	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	14	2	FALSE	DIPLOID	PASS
659_bTo_pair	GOLGA6A	15	74069857	74082550	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	GOLGA6B	15	72654738	72666394	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	GOLGA6C	15	75258599	75270199	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	GOLGA6D	15	75282835	75295807	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	GOLGA6L10	15	82339998	82349475	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	7	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	GOLGA6L2	15	23439498	23447234	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	9	2	FALSE	HETLOSS	PASS
659_bTo_pair	GOLGA6L22	15	22458903	22469230	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	GOLGA6L4	15	84235773	84245368	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	3	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	GOLGA6L6	15	20531856	20541800	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	GOLGA7	8	41490396	41510980	FALSE	536	-0.812766686991614	14	38512585	41896345	0.365165917639896	1	0	0.365165917639896	1	0	3383760	1	19	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	GOLGA7B	10	97850239	97871580	FALSE	664	-0.371799025630062	36	96955124	97864220	0.365165917639896	2	0	0.365165917639896	2	0	909096	2	23	7	0	TRUE	CNLOH	PASS
659_bTo_pair	GOLGA8A	15	34379068	34437466	FALSE	890	-0.864832779596883	13	34359248	37966686	0.365165917639896	1	0	0.365165917639896	1	0	3607438	1	12	6	4	FALSE	HETLOSS	PASS
659_bTo_pair	GOLGA8B	15	34525207	34588503	FALSE	890	-0.864832779596883	13	34359248	37966686	0.365165917639896	1	0	0.365165917639896	1	0	3607438	1	12	5	3	FALSE	HETLOSS	PASS
659_bTo_pair	GOLGA8F	15	28378621	28392018	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	GOLGA8G	15	28519611	28533014	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	GOLGA8H	15	30604126	30614561	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	GOLGA8J	15	30083053	30093499	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	GOLGA8K	15	32392782	32403292	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	15	3	FALSE	HETLOSS	PASS
659_bTo_pair	GOLGA8M	15	28701954	28738384	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	14	1	FALSE	HETLOSS	PASS
659_bTo_pair	GOLGA8N	15	32593456	32607310	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	6	4	FALSE	HETLOSS	PASS
659_bTo_pair	GOLGA8O	15	32445106	32455634	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	4	3	FALSE	HETLOSS	PASS
659_bTo_pair	GOLGA8Q	15	30552078	30562501	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	GOLGA8R	15	30403740	30414162	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	5	3	FALSE	HETLOSS	PASS
659_bTo_pair	GOLGA8S	15	23354748	23367231	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	10	2	FALSE	HETLOSS	PASS
659_bTo_pair	GOLGA8T	15	30135149	30145567	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	GOLGB1	3	121663199	121749767	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	48	3	FALSE	GAIN	PASS
659_bTo_pair	GOLIM4	3	168008677	168095975	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	18	0	FALSE	GAIN	PASS
659_bTo_pair	GOLM1	9	86026146	86100173	FALSE	604	-0.547885090101936	27	85547201	90613824	1	2	1	1	2	1	5066623	1	21	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	GOLPH3	5	32124704	32174350	FALSE	312	-0.206081392785099	47	24487677	35857105	0.365165917639896	3	1	0.365165917639896	3	1	11369428	2	27	6	0	FALSE	GAIN	PASS
659_bTo_pair	GOLPH3L	1	150646225	150697144	FALSE	47	-0.642778549638746	26	150622836	150876589	NA	2	NA	NA	2	NA	253753	NA	6	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GOLT1A	1	204198160	204214092	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	GOLT1B	12	21501781	21518408	FALSE	756	0.960887785397812	78	21462793	21508541	0.364342740527346	11	NA	0.364342740527346	11	NA	45748	NA	3	7	0	TRUE	AMP	PASS
659_bTo_pair	GON4L	1	155749662	155859400	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	42	1	FALSE	DIPLOID	PASS
659_bTo_pair	GON7	14	93202894	93207094	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	GOPC	6	117560269	117602542	FALSE	421	-0.534093125771784	29	117482879	126348569	NA	2	NA	NA	2	NA	8865690	NA	29	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GORAB	1	170532129	170553446	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	GORASP1	3	39096659	39108363	FALSE	212	-0.750996176556328	19	38165958	40533064	0.365165917639896	1	0	0.365165917639896	1	0	2367106	1	26	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	GORASP2	2	170928464	170967129	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	GOSR1	17	30477362	30527592	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	GOSR2	17	46923075	46975524	FALSE	1046	-0.746772159255206	19	45395806	47696360	0.365165917639896	1	0	0.365165917639896	1	0	2300554	1	26	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	GOT1	10	99396870	99431569	FALSE	666	-0.516928660882684	29	98163350	100063639	NA	2	NA	NA	2	NA	1900289	NA	16	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GOT1L1	8	37934281	37940129	FALSE	532	-0.898955944857558	13	37845201	38269206	0.365165917639896	1	0	0.365165917639896	1	0	424005	1	12	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	GOT2	16	58707131	58734357	FALSE	972	-0.499158643645776	34	57931773	64947842	NA	2	NA	NA	2	NA	7016069	NA	18	10	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GP1BA	17	4932297	4935030	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	GP1BB	22	19722945	19724771	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	4	0	FALSE	CNLOH	PASS
659_bTo_pair	GP2	16	20309572	20327808	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	GP5	3	194394821	194398354	FALSE	269	-0.263219948753545	44	189957970	195888442	0.345317016959666	3	1	0.345317016959666	3	1	5930472	2	31	7	0	FALSE	GAIN	PASS
659_bTo_pair	GP6	19	55013705	55038264	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	12	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	GP9	3	129060767	129062406	FALSE	240	-0.311262736248051	40	128620554	130098189	0.308149309490068	3	1	0.308149309490068	3	1	1477635	2	22	2	0	FALSE	GAIN	PASS
659_bTo_pair	GPA33	1	167052836	167166479	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	24	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPAA1	8	144082590	144086216	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	GPALPP1	13	44989529	45037669	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	GPAM	10	112149864	112215377	FALSE	671	-0.443752838916331	34	110781853	112815244	NA	2	NA	NA	2	NA	2033391	NA	10	21	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GPANK1	6	31661229	31666283	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	GPAT2	2	96021946	96039451	FALSE	126	-0.498143911483876	34	95935616	96208449	NA	2	NA	NA	2	NA	272833	NA	6	14	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GPAT3	4	83535914	83605875	FALSE	291	-0.458701040497953	34	83536708	87613131	NA	2	NA	NA	2	NA	4076423	NA	17	13	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GPAT4	8	41577187	41625001	FALSE	536	-0.812766686991614	14	38512585	41896345	0.365165917639896	1	0	0.365165917639896	1	0	3383760	1	19	13	1	FALSE	HETLOSS	PASS
659_bTo_pair	GPATCH1	19	33080880	33130542	FALSE	1165	-0.570153591761829	23	29923697	33225768	0.186356639256811	1	0	0.186356639256811	1	0	3302071	1	18	22	6	FALSE	HETLOSS	PASS
659_bTo_pair	GPATCH11	2	37084451	37099244	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPATCH2	1	217426992	217631082	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPATCH2L	14	76151916	76254342	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	14	2	FALSE	DIPLOID	PASS
659_bTo_pair	GPATCH3	1	26890488	26900466	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPATCH4	1	156594487	156601496	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	9	2	FALSE	DIPLOID	PASS
659_bTo_pair	GPATCH8	17	44395284	44503430	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	22	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GPBAR1	2	218259496	218263859	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	GPBP1	5	57173948	57264679	FALSE	321	-0.708699637138103	22	56909652	57262746	0.291335969972972	1	0	0.291335969972972	1	0	353094	1	3	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	GPBP1L1	1	45627304	45688113	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	11	2	FALSE	DIPLOID	PASS
659_bTo_pair	GPC1	2	240435671	240468078	FALSE	194	-0.588828356865968	23	240025214	241817025	0.186356639256811	1	0	0.186356639256811	1	0	1791811	1	34	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	GPC2	7	100169606	100177372	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	GPC3	23	133535745	133985895	FALSE	1335	0.100243493544559	59	130066940	134244999	0.308533751035793	5	NA	0.308533751035793	5	NA	4178059	NA	21	12	0	FALSE	AMP (many states)	PASS
659_bTo_pair	GPC4	23	133300103	133415490	FALSE	1335	0.100243493544559	59	130066940	134244999	0.308533751035793	5	NA	0.308533751035793	5	NA	4178059	NA	21	10	0	FALSE	AMP (many states)	PASS
659_bTo_pair	GPC5	13	91398607	92873682	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	10	0	FALSE	CNLOH	PASS
659_bTo_pair	GPC6	13	93226842	94407401	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	10	1	FALSE	CNLOH	PASS
659_bTo_pair	GPCPD1	20	5544404	5611026	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	19	1	FALSE	HETLOSS	PASS
659_bTo_pair	GPD1	12	50103819	50111319	FALSE	771	0.790237382667226	75	50085248	50108077	0.364342740527346	10	NA	0.364342740527346	10	NA	22829	NA	2	11	1	TRUE	AMP	PASS
659_bTo_pair	GPD1L	3	32105689	32168713	FALSE	209	-0.637968449787088	26	31990360	37328493	NA	2	NA	NA	2	NA	5338133	NA	26	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GPD2	2	156435290	156613735	FALSE	149	-0.454179855872301	30	147845197	157628657	1	2	1	1	2	1	9783460	1	30	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPER1	7	1082208	1093815	FALSE	450	-0.329551508654045	40	193185	2379492	0.308149309490068	3	1	0.308149309490068	3	1	2186307	2	26	5	0	FALSE	GAIN	PASS
659_bTo_pair	GPHA2	11	64934471	64935888	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	3	0	FALSE	GAIN	PASS
659_bTo_pair	GPHB5	14	63312835	63318879	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPHN	14	66507407	67181803	FALSE	862	-0.496151350288089	31	65561584	67816009	1	2	1	1	2	1	2254425	1	17	24	2	FALSE	DIPLOID	PASS
659_bTo_pair	GPI	19	34359480	34402413	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	GPIHBP1	8	143213193	143217170	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	6	2	FALSE	DIPLOID	PASS
659_bTo_pair	GPKOW	23	49113389	49123801	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	11	0	FALSE	AMP (many states)	PASS
659_bTo_pair	GPLD1	6	24424565	24495205	FALSE	373	-0.695027086668472	22	24174718	26017145	0.291335969972972	1	0	0.291335969972972	1	0	1842427	1	23	26	3	FALSE	HETLOSS	PASS
659_bTo_pair	GPM6A	4	175632934	176002664	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	GPM6B	23	13771031	13938638	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	10	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	GPN1	2	27628247	27651508	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPN2	1	26876133	26890297	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPN3	12	110452484	110469268	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPNMB	7	23235967	23275108	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	13	3	FALSE	GAIN	PASS
659_bTo_pair	GPR1	2	206175316	206218047	FALSE	168	-0.499602545595775	30	203936898	208231285	1	2	1	1	2	1	4294387	1	25	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPR101	23	137030148	137031674	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	6	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	GPR107	9	130053426	130140169	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	GPR108	19	6729914	6737603	FALSE	1128	-0.566723388755247	23	6665178	7083719	0.186356639256811	1	0	0.186356639256811	1	0	418541	1	13	17	2	FALSE	HETLOSS	PASS
659_bTo_pair	GPR119	23	130384440	130385447	FALSE	1335	0.100243493544559	59	130066940	134244999	0.308533751035793	5	NA	0.308533751035793	5	NA	4178059	NA	21	3	0	FALSE	AMP (many states)	PASS
659_bTo_pair	GPR12	13	26755200	26760785	FALSE	824	-0.820211361281197	14	23365275	27988570	0.365165917639896	1	0	0.365165917639896	1	0	4623295	1	32	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	GPR132	14	105049389	105065445	FALSE	885	-0.488568816150345	30	104868462	105529782	1	2	1	1	2	1	661320	1	18	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPR135	14	59429022	59465342	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPR137	11	64270062	64289500	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	15	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	GPR137B	1	236142505	236221865	FALSE	82	-0.550278310688863	27	235196044	241494870	1	2	1	1	2	1	6298826	1	22	10	2	FALSE	DIPLOID	PASS
659_bTo_pair	GPR137C	14	52553148	52637713	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPR139	16	20031485	20073917	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPR141	7	37683796	37833788	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	4	0	FALSE	GAIN	PASS
659_bTo_pair	GPR142	17	74367407	74372622	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPR143	23	9725346	9786297	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	10	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	GPR146	7	1044576	1059261	FALSE	450	-0.329551508654045	40	193185	2379492	0.308149309490068	3	1	0.308149309490068	3	1	2186307	2	26	4	0	FALSE	GAIN	PASS
659_bTo_pair	GPR148	2	130729070	130730336	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPR149	3	154337672	154429715	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	11	1	FALSE	GAIN	PASS
659_bTo_pair	GPR15	3	98531899	98533150	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	5	1	FALSE	GAIN	PASS
659_bTo_pair	GPR150	5	95620078	95622142	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	GPR151	5	146513103	146516190	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	GPR152	11	67451301	67452729	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	6	0	FALSE	GAIN	PASS
659_bTo_pair	GPR153	1	6247346	6260975	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	GPR155	2	174431571	174487094	FALSE	153	-0.469039793655258	34	172736055	177217715	NA	2	NA	NA	2	NA	4481660	NA	28	18	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GPR156	3	120164645	120285094	FALSE	235	1.78679773147733	98	119821355	120167962	0.364342740527346	22	NA	0.364342740527346	22	NA	346607	NA	2	15	0	TRUE	AMP	PASS
659_bTo_pair	GPR157	1	9100305	9129170	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	GPR158	10	25174802	25602226	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	19	1	FALSE	CNLOH	PASS
659_bTo_pair	GPR160	3	170037929	170085403	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	4	0	FALSE	GAIN	PASS
659_bTo_pair	GPR161	1	168079543	168137667	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPR162	12	6821545	6829972	FALSE	743	-0.145896859645485	51	6620180	6938488	0.365165917639896	3	NA	0.365165917639896	3	NA	318308	NA	20	12	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	GPR17	2	127645864	127652639	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPR171	3	151197832	151203201	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	4	0	FALSE	GAIN	PASS
659_bTo_pair	GPR173	23	53049091	53080615	FALSE	1299	0.565829394219729	69	53076723	53176407	0.364342740527346	8	NA	0.364342740527346	8	NA	99684	NA	3	5	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	GPR174	23	79144663	79175315	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	4	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	GPR176	15	39799032	39920892	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	9	2	FALSE	HETLOSS	PASS
659_bTo_pair	GPR179	17	38325530	38343847	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	34	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	GPR18	13	99254714	99261744	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	4	0	FALSE	CNLOH	PASS
659_bTo_pair	GPR180	13	94601903	94634645	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	9	0	FALSE	CNLOH	PASS
659_bTo_pair	GPR182	12	56994446	56998441	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GPR183	13	99294530	99307405	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	5	0	FALSE	CNLOH	PASS
659_bTo_pair	GPR19	12	12660891	12696207	FALSE	751	-0.581914964256938	26	12079319	12707317	NA	2	NA	NA	2	NA	627998	NA	7	7	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GPR20	8	141356500	141367267	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPR21	9	123034527	123035696	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	GPR22	7	107470018	107475659	FALSE	488	-0.464127371400283	34	107070260	116559206	NA	2	NA	NA	2	NA	9488946	NA	33	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GPR25	1	200872955	200874178	FALSE	60	-0.443336911293225	30	196228264	201209660	1	2	1	1	2	1	4981396	1	29	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPR26	10	123666355	123694607	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	6	1	FALSE	CNLOH	PASS
659_bTo_pair	GPR27	3	71754050	71756496	FALSE	230	-1.02914185439516	8	71684725	71785057	0.342391532111247	0	0	0.342391532111247	0	0	100332	0	4	4	0	FALSE	HOMDEL	PASS
659_bTo_pair	GPR3	1	27392644	27395814	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPR31	6	167156271	167158329	FALSE	448	-0.0954555878575429	53	167040062	167373262	0.273255132087987	4	NA	0.273255132087987	4	NA	333200	NA	7	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	GPR32	19	50770464	50771732	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	GPR33	14	31482875	31488142	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPR34	23	41688973	41697277	FALSE	1290	-0.118437036786996	53	41447899	44844689	0.273255132087987	4	NA	0.273255132087987	4	NA	3396790	NA	11	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	GPR35	2	240605431	240631259	FALSE	194	-0.588828356865968	23	240025214	241817025	0.186356639256811	1	0	0.186356639256811	1	0	1791811	1	34	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	GPR37	7	124745997	124765627	FALSE	490	-0.576498321273708	26	116888215	124790543	NA	2	NA	NA	2	NA	7902328	NA	33	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GPR37L1	1	202122858	202133592	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	GPR39	2	132416574	132646559	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	GPR4	19	45589764	45602208	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	GPR42	19	35370929	35372962	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	GPR45	2	105241743	105243049	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPR50	23	151176653	151181465	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	8	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	GPR52	1	174448111	174449198	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPR55	2	230907318	230961066	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPR6	6	109978256	109980718	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPR61	1	109539872	109548406	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	GPR62	3	51955314	51957504	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	GPR63	6	96794126	96837463	FALSE	411	-0.455063723695114	34	95586870	106069771	NA	2	NA	NA	2	NA	10482901	NA	27	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GPR65	14	88005124	88014811	FALSE	870	-0.471399657488227	30	81180359	92000019	1	2	1	1	2	1	10819660	1	29	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPR68	14	91232532	91253925	FALSE	870	-0.471399657488227	30	81180359	92000019	1	2	1	1	2	1	10819660	1	29	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPR75	2	53852913	53859989	FALSE	110	-0.435434252584523	30	48441014	54599245	1	2	1	1	2	1	6158231	1	18	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPR75-ASB3	2	53670293	53860160	FALSE	110	-0.435434252584523	30	48441014	54599245	1	2	1	1	2	1	6158231	1	18	36	4	FALSE	DIPLOID	PASS
659_bTo_pair	GPR78	4	8558725	8619761	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	21	7	FALSE	GAIN	PASS
659_bTo_pair	GPR82	23	41724155	41730135	FALSE	1290	-0.118437036786996	53	41447899	44844689	0.273255132087987	4	NA	0.273255132087987	4	NA	3396790	NA	11	5	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	GPR83	11	94377311	94401419	FALSE	715	-0.44311716102168	34	90214063	94410681	NA	2	NA	NA	2	NA	4196618	NA	16	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GPR84	12	54362445	54364487	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	GPR85	7	113078331	113087778	FALSE	488	-0.464127371400283	34	107070260	116559206	NA	2	NA	NA	2	NA	9488946	NA	33	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GPR87	3	151294086	151316952	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	6	2	FALSE	GAIN	PASS
659_bTo_pair	GPR88	1	100538137	100542018	FALSE	32	-0.441874489475641	34	100273343	107324874	NA	2	NA	NA	2	NA	7051531	NA	18	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GPR89A	1	145607990	145670648	FALSE	44	-0.0508975396039555	55	119911615	146019534	0.328696605851359	4	NA	0.328696605851359	4	NA	26107919	NA	33	11	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	GPR89B	1	147928393	147993521	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPRASP1	23	102651366	102659083	FALSE	1321	0.439394403838451	66	101391440	103377786	0.364342740527346	7	NA	0.364342740527346	7	NA	1986346	NA	34	17	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	GPRASP2	23	102712176	102717733	FALSE	1321	0.439394403838451	66	101391440	103377786	0.364342740527346	7	NA	0.364342740527346	7	NA	1986346	NA	34	10	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	GPRC5A	12	12890782	12917937	FALSE	753	-0.517160615058114	27	12726042	18242949	1	2	1	1	2	1	5516907	1	31	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPRC5B	16	19856691	19886167	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPRC5C	17	74424851	74451653	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPRC5D	12	12940775	12952147	FALSE	753	-0.517160615058114	27	12726042	18242949	1	2	1	1	2	1	5516907	1	31	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	GPRC6A	6	116792085	116829037	FALSE	417	-0.520434008170675	29	114058103	117272433	NA	2	NA	NA	2	NA	3214330	NA	20	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GPRIN1	5	176595802	176610133	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	GPRIN2	10	46549044	46555530	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	5	5	FALSE	CNLOH	PASS
659_bTo_pair	GPRIN3	4	89236386	89308010	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPS1	17	82050691	82057470	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPS2	17	7311324	7315564	TRUE	999	0.337193926194085	65	7307123	7323993	0.364342740527346	6	NA	0.364342740527346	6	NA	16870	NA	4	14	2	FALSE	AMP (many states)	PASS
659_bTo_pair	GPSM1	9	136327476	136359605	FALSE	629	-0.955558414525678	9	134750808	136485014	0.291955377254426	0	0	0.291955377254426	0	0	1734206	0	30	18	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	GPSM2	1	108875350	108934545	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	GPSM3	6	32190766	32195523	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	8	1	TRUE	HETLOSS	PASS
659_bTo_pair	GPT	8	144502973	144507174	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	10	0	TRUE	DIPLOID	PASS
659_bTo_pair	GPT2	16	46884378	46931297	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	GPX2	14	64939152	64942905	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPX3	5	151020438	151028993	FALSE	350	-0.819899512516675	16	150444373	153997804	0.365165917639896	1	0	0.365165917639896	1	0	3553431	1	25	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	GPX4	19	1103926	1106791	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	GPX5	6	28525925	28534952	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	GPX6	6	28503296	28528215	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	6	2	FALSE	DIPLOID	PASS
659_bTo_pair	GPX7	1	52602372	52609051	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	GPX8	5	55160118	55167071	FALSE	319	-0.764156631411702	19	50399919	56556187	0.365165917639896	1	0	0.365165917639896	1	0	6156268	1	28	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	GRAMD1A	19	34994784	35026471	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	23	3	FALSE	HETLOSS	PASS
659_bTo_pair	GRAMD1B	11	123358428	123627774	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	25	0	FALSE	DIPLOID	PASS
659_bTo_pair	GRAMD1C	3	113828182	113947174	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	18	1	FALSE	GAIN	PASS
659_bTo_pair	GRAMD2A	15	72159807	72197785	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	GRAMD2B	5	126360132	126496494	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	16	2	FALSE	HETLOSS	PASS
659_bTo_pair	GRAMD4	22	46576012	46679790	FALSE	1271	-0.350898193716427	41	45922979	50285791	0.284729887459054	3	0	0.284729887459054	3	0	4362812	3	30	18	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	GRAP	17	19020673	19047637	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	3	0	FALSE	CNLOH	PASS
659_bTo_pair	GRAP2	22	39901082	39973721	FALSE	1267	-0.448885551917151	34	39313004	41087696	NA	2	NA	NA	2	NA	1774692	NA	24	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GRASP	12	52006940	52015889	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	GRB10	7	50590063	50793462	FALSE	467	-0.115184963745349	53	50463290	54757565	0.273255132087987	4	NA	0.273255132087987	4	NA	4294275	NA	7	19	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	GRB14	2	164492812	164621848	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	GRB2	17	75318076	75405709	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	GRB7	17	39737927	39747291	FALSE	1028	-0.989926701974123	11	39729705	39746799	0.289956079954009	0	0	0.289956079954009	0	0	17094	0	3	14	0	FALSE	HOMDEL	PASS
659_bTo_pair	GREB1	2	11482341	11642788	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	39	3	FALSE	DIPLOID	PASS
659_bTo_pair	GREB1L	18	21242242	21525417	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	35	0	FALSE	GAIN	PASS
659_bTo_pair	GREM1	15	32717974	32745107	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	45	11	TRUE	HETLOSS	PASS
659_bTo_pair	GREM2	1	240489573	240612149	FALSE	82	-0.550278310688863	27	235196044	241494870	1	2	1	1	2	1	6298826	1	22	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	GRHL1	2	9951693	10002277	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	GRHL2	8	101492432	101669726	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	17	1	FALSE	GAIN	PASS
659_bTo_pair	GRHL3	1	24319322	24364482	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	21	2	FALSE	DIPLOID	PASS
659_bTo_pair	GRHPR	9	37422666	37436990	FALSE	594	0.68076596901961	72	36840597	37441713	0.364342740527346	9	NA	0.364342740527346	9	NA	601116	NA	4	9	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	GRIA1	5	153489615	153813869	FALSE	350	-0.819899512516675	16	150444373	153997804	0.365165917639896	1	0	0.365165917639896	1	0	3553431	1	25	23	1	FALSE	HETLOSS	PASS
659_bTo_pair	GRIA2	4	157204182	157366075	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	21	1	FALSE	HETLOSS	PASS
659_bTo_pair	GRIA3	23	123184153	123490915	FALSE	1329	-0.42573548551195	34	123184501	123712866	NA	2	NA	NA	2	NA	528365	NA	2	23	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GRIA4	11	105609994	105982092	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	GRID1	10	85599555	86366493	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	20	0	FALSE	CNLOH	PASS
659_bTo_pair	GRID2	4	92303622	93810157	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	GRID2IP	7	6497462	6551436	FALSE	456	-0.240618790532325	45	6028682	12688782	0.279823559258657	3	0	0.279823559258657	3	0	6660100	3	32	26	1	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	GRIFIN	7	2474844	2476894	FALSE	451	-0.380727397700309	39	2432806	2844144	NA	2	NA	NA	2	NA	411338	NA	8	5	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GRIK1	21	29536933	29940033	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	20	3	FALSE	DIPLOID	PASS
659_bTo_pair	GRIK2	6	101181257	102070083	FALSE	411	-0.455063723695114	34	95586870	106069771	NA	2	NA	NA	2	NA	10482901	NA	27	21	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GRIK3	1	36795527	37034129	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	GRIK4	11	120511700	120988904	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	21	1	FALSE	DIPLOID	PASS
659_bTo_pair	GRIK5	19	41998321	42069498	FALSE	1177	-0.671885212726332	22	41354916	42250573	0.291335969972972	1	0	0.291335969972972	1	0	895657	1	32	25	1	FALSE	HETLOSS	PASS
659_bTo_pair	GRIN1	9	137138390	137168762	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	22	1	FALSE	HETLOSS	PASS
659_bTo_pair	GRIN2A	16	9753404	10182754	TRUE	949	1.91304122891753	101	9748451	10431100	0.364342740527346	25	NA	0.364342740527346	25	NA	682649	NA	2	76	9	FALSE	AMP	PASS
659_bTo_pair	GRIN2B	12	13437942	13981957	FALSE	753	-0.517160615058114	27	12726042	18242949	1	2	1	1	2	1	5516907	1	31	26	0	FALSE	DIPLOID	PASS
659_bTo_pair	GRIN2C	17	74842023	74861504	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	20	1	FALSE	DIPLOID	PASS
659_bTo_pair	GRIN2D	19	48394875	48444931	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	19	1	FALSE	HETLOSS	PASS
659_bTo_pair	GRIN3A	9	101569353	101738580	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	20	7	FALSE	DIPLOID	PASS
659_bTo_pair	GRIN3B	19	1000419	1009732	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	17	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	GRINA	8	143990058	143993415	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	GRIP1	12	66347431	67069162	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	26	1	FALSE	DIPLOID	PASS
659_bTo_pair	GRIP2	3	14489111	14556075	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	26	0	FALSE	HETLOSS	PASS
659_bTo_pair	GRIPAP1	23	48973720	49002264	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	24	0	FALSE	AMP (many states)	PASS
659_bTo_pair	GRK1	13	113667155	113737735	FALSE	846	-0.38711803760524	39	113325636	114000814	NA	2	NA	NA	2	NA	675178	NA	11	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GRK2	11	67266410	67286556	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	19	3	FALSE	GAIN	PASS
659_bTo_pair	GRK3	22	25564849	25729294	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	21	0	FALSE	CNLOH	PASS
659_bTo_pair	GRK4	4	2963608	3040747	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	16	1	FALSE	GAIN	PASS
659_bTo_pair	GRK5	10	119207589	119459742	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	17	0	FALSE	CNLOH	PASS
659_bTo_pair	GRK6	5	177403204	177442901	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	30	1	FALSE	HETLOSS	PASS
659_bTo_pair	GRK7	3	141778148	141818490	FALSE	246	-0.322519280750539	43	139344000	142447976	0.192136715055622	3	NA	0.192136715055622	3	NA	3103976	NA	19	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	GRM1	6	146027646	146437598	FALSE	431	-0.504239059693729	30	143136912	149638436	1	2	1	1	2	1	6501524	1	29	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	GRM2	3	51707070	51718613	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	GRM3	7	86643914	86864884	FALSE	476	1.95246746887264	102	86644064	86864568	0.364342740527346	26	NA	0.364342740527346	26	NA	220504	NA	1	19	1	FALSE	AMP	PASS
659_bTo_pair	GRM4	6	34018645	34155622	FALSE	391	-0.499783837646083	34	33391964	35241176	NA	2	NA	NA	2	NA	1849212	NA	26	20	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GRM5	11	88504576	89065945	FALSE	714	-0.230278951577934	46	86306357	90211282	0.298322295679939	3	NA	0.298322295679939	3	NA	3904925	NA	21	19	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	GRM6	5	178977587	178996206	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	16	4	FALSE	HETLOSS	PASS
659_bTo_pair	GRM7	3	6770001	7741533	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	16	4	FALSE	HETLOSS	PASS
659_bTo_pair	GRM8	7	126438598	127253294	FALSE	492	-0.463656181520944	30	126439208	129166764	1	2	1	1	2	1	2727556	1	27	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	GRN	17	44345086	44353102	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GRP	18	59220168	59230774	FALSE	1107	-0.779150604055344	19	58918284	59696746	0.365165917639896	1	0	0.365165917639896	1	0	778462	1	7	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	GRPEL1	4	7058906	7068197	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	5	0	FALSE	GAIN	PASS
659_bTo_pair	GRPEL2	5	149345430	149354583	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	GRPR	23	16123556	16153021	FALSE	1276	0.0763243231691416	59	15827382	20064777	0.308533751035793	5	NA	0.308533751035793	5	NA	4237395	NA	24	6	2	FALSE	AMP (many states)	PASS
659_bTo_pair	GRSF1	4	70815782	70839945	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	GRTP1	13	113324164	113364148	FALSE	845	2.15805867245839	107	113297383	113324449	0.364342740527346	30	NA	0.364342740527346	30	NA	27066	NA	2	10	0	TRUE	AMP	PASS
659_bTo_pair	GRWD1	19	48445773	48457022	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	GRXCR1	4	42893267	43030658	FALSE	282	-0.204234033978701	47	41752697	49032685	0.365165917639896	3	1	0.365165917639896	3	1	7279988	2	31	6	0	FALSE	GAIN	PASS
659_bTo_pair	GRXCR2	5	145858521	145937126	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	GSAP	7	77310751	77416400	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	31	2	FALSE	DIPLOID	PASS
659_bTo_pair	GSC	14	94768216	94770230	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	GSC2	22	19148576	19150283	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	4	0	FALSE	CNLOH	PASS
659_bTo_pair	GSDMA	17	39953263	39977766	FALSE	1030	-0.735138103765796	19	39868404	40278196	0.365165917639896	1	0	0.365165917639896	1	0	409792	1	14	13	5	FALSE	HETLOSS	PASS
659_bTo_pair	GSDMB	17	39904595	39919854	FALSE	1030	-0.735138103765796	19	39868404	40278196	0.365165917639896	1	0	0.365165917639896	1	0	409792	1	14	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	GSDMC	8	129748196	129786888	FALSE	565	-0.282741903777565	44	129748604	134610527	0.345317016959666	3	1	0.345317016959666	3	1	4861923	2	18	14	1	FALSE	GAIN	PASS
659_bTo_pair	GSDMD	8	143553207	143563062	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	GSDME	7	24698351	24758113	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	11	0	FALSE	GAIN	PASS
659_bTo_pair	GSE1	16	85169525	85676204	FALSE	987	-0.578642888038652	23	81999201	85806436	0.186356639256811	1	0	0.186356639256811	1	0	3807235	1	31	26	1	FALSE	HETLOSS	PASS
659_bTo_pair	GSG1	12	13083560	13103683	FALSE	753	-0.517160615058114	27	12726042	18242949	1	2	1	1	2	1	5516907	1	31	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	GSG1L	16	27787535	28063509	FALSE	962	-0.522336070959039	29	27403203	28925074	NA	2	NA	NA	2	NA	1521871	NA	25	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GSG1L2	17	9802386	9822071	FALSE	1006	-0.894220729735546	12	8370429	10825247	0.365165917639896	1	0	0.365165917639896	1	0	2454818	1	31	6	2	FALSE	HETLOSS	PASS
659_bTo_pair	GSK3A	19	42230186	42242625	FALSE	1177	-0.671885212726332	22	41354916	42250573	0.291335969972972	1	0	0.291335969972972	1	0	895657	1	32	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	GSK3B	3	119821323	120094417	FALSE	235	1.78679773147733	98	119821355	120167962	0.364342740527346	22	NA	0.364342740527346	22	NA	346607	NA	2	37	0	FALSE	AMP	PASS
659_bTo_pair	GSKIP	14	96363452	96387288	FALSE	876	-0.546199181806584	27	96039535	102050530	1	2	1	1	2	1	6010995	1	30	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	GSN	9	121207794	121332843	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	GSPT1	16	11868128	11916082	FALSE	954	-0.618769947650953	26	11345676	11941160	NA	2	NA	NA	2	NA	595484	NA	9	16	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GSPT2	23	51743431	51746232	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	7	0	FALSE	AMP (many states)	PASS
659_bTo_pair	GSR	8	30678061	30727999	FALSE	524	-0.752404429217175	19	29337070	31032666	0.365165917639896	1	0	0.365165917639896	1	0	1695596	1	13	14	1	FALSE	HETLOSS	PASS
659_bTo_pair	GSS	20	34928433	34956027	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	GSTA1	6	52791664	52803910	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	GSTA2	6	52750089	52763569	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	6	3	FALSE	DIPLOID	PASS
659_bTo_pair	GSTA3	6	52896639	52909685	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	GSTA4	6	52977948	52995378	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	GSTA5	6	52831655	52846095	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	GSTCD	4	105708778	105847728	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	GSTK1	7	143244093	143270854	FALSE	503	-0.495530614890199	34	143026241	143572680	NA	2	NA	NA	2	NA	546439	NA	15	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GSTM2	1	109668022	109709551	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	GSTM3	1	109733932	109741038	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	GSTM4	1	109656081	109674836	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	GSTM5	1	109711780	109775428	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	34	0	FALSE	HETLOSS	PASS
659_bTo_pair	GSTO1	10	104235356	104267459	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	6	0	FALSE	CNLOH	PASS
659_bTo_pair	GSTO2	10	104268873	104304945	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	7	0	FALSE	CNLOH	PASS
659_bTo_pair	GSTP1	11	67583595	67586656	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	7	4	FALSE	GAIN	PASS
659_bTo_pair	GSTT2B	22	23957414	23961186	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	4	0	FALSE	CNLOH	PASS
659_bTo_pair	GSTT4	22	23998401	24005453	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	5	1	FALSE	CNLOH	PASS
659_bTo_pair	GSTZ1	14	77320884	77331597	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	GSX1	13	27792643	27794768	FALSE	824	-0.820211361281197	14	23365275	27988570	0.365165917639896	1	0	0.365165917639896	1	0	4623295	1	32	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	GSX2	4	54099523	54102505	FALSE	283	-0.7726728361031	19	49038034	54241294	0.365165917639896	1	0	0.365165917639896	1	0	5203260	1	15	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	GTDC1	2	143938068	144332568	FALSE	147	-0.57792076882865	26	142885531	144208666	NA	2	NA	NA	2	NA	1323135	NA	3	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GTF2A1	14	81175452	81221377	FALSE	870	-0.471399657488227	30	81180359	92000019	1	2	1	1	2	1	10819660	1	29	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	GTF2A1L	2	48617798	48733148	FALSE	110	-0.435434252584523	30	48441014	54599245	1	2	1	1	2	1	6158231	1	18	26	1	FALSE	DIPLOID	PASS
659_bTo_pair	GTF2A2	15	59638062	59657541	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	GTF2B	1	88852932	88891944	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	GTF2E1	3	120742637	120783069	FALSE	236	-0.555107352649266	26	120168171	121419120	NA	2	NA	NA	2	NA	1250949	NA	8	6	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GTF2E2	8	30578318	30658251	FALSE	524	-0.752404429217175	19	29337070	31032666	0.365165917639896	1	0	0.365165917639896	1	0	1695596	1	13	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	GTF2F1	19	6379569	6393981	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	GTF2F2	13	45120515	45284909	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	GTF2H1	11	18322295	18367044	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	GTF2H2	5	71032670	71067689	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	3	1	FALSE	HETLOSS	PASS
659_bTo_pair	GTF2H2C	5	69560208	69594723	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	GTF2H3	12	123633739	123662606	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	GTF2H4	6	30908184	30914106	FALSE	379	-0.524744136561063	27	30546321	31270541	1	2	1	1	2	1	724220	1	30	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	GTF2H5	6	158168350	158199344	FALSE	442	-0.485239870020868	34	157293045	158767513	NA	2	NA	NA	2	NA	1474468	NA	11	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GTF2I	7	74657667	74760692	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	GTF2IRD1	7	74453790	74602604	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	28	0	FALSE	DIPLOID	PASS
659_bTo_pair	GTF2IRD2	7	74796144	74851551	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	GTF2IRD2B	7	75092573	75149817	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	GTF3A	13	27424544	27435823	FALSE	824	-0.820211361281197	14	23365275	27988570	0.365165917639896	1	0	0.365165917639896	1	0	4623295	1	32	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	GTF3C1	16	27459555	27549913	FALSE	962	-0.522336070959039	29	27403203	28925074	NA	2	NA	NA	2	NA	1521871	NA	25	45	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GTF3C2	2	27325849	27357034	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	23	0	FALSE	DIPLOID	PASS
659_bTo_pair	GTF3C3	2	196763032	196799725	FALSE	161	-0.46057869782823	30	190057617	197310624	1	2	1	1	2	1	7253007	1	23	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	GTF3C4	9	132670035	132694955	FALSE	625	-0.794391185935477	14	131261330	132889947	0.365165917639896	1	0	0.365165917639896	1	0	1628617	1	17	14	1	FALSE	HETLOSS	PASS
659_bTo_pair	GTF3C5	9	133030675	133058503	FALSE	627	-0.867007674319489	12	132986776	134157867	0.365165917639896	1	0	0.365165917639896	1	0	1171091	1	28	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	GTF3C6	6	110958560	110967890	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	GTPBP1	22	38705723	38738299	FALSE	1265	-0.53141020507802	29	38041114	39152464	NA	2	NA	NA	2	NA	1111350	NA	31	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GTPBP10	7	90335223	90391455	FALSE	479	-0.448308050861149	30	87602941	92590330	1	2	1	1	2	1	4987389	1	30	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	GTPBP2	6	43605316	43629162	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	GTPBP3	19	17334920	17342735	FALSE	1155	-0.249305971018279	46	17273895	17821522	0.298322295679939	3	NA	0.298322295679939	3	NA	547627	NA	25	11	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	GTPBP4	10	988019	1019936	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	19	3	FALSE	CNLOH	PASS
659_bTo_pair	GTPBP8	3	112990918	113015060	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	17	2	FALSE	GAIN	PASS
659_bTo_pair	GTSE1	22	46296741	46330810	FALSE	1271	-0.350898193716427	41	45922979	50285791	0.284729887459054	3	0	0.284729887459054	3	0	4362812	3	30	14	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	GTSF1	12	54455950	54473602	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	GTSF1L	20	43726164	43726998	FALSE	1210	-0.476296426145969	34	43513997	45110019	NA	2	NA	NA	2	NA	1596022	NA	26	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GUCA1A	6	42155406	42180056	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	GUCA1B	6	42184401	42194916	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	GUCA1C	3	108907792	108953895	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	4	1	FALSE	GAIN	PASS
659_bTo_pair	GUCA2A	1	42162691	42164718	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	GUCA2B	1	42153421	42155824	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	GUCD1	22	24540423	24555935	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	9	0	FALSE	CNLOH	PASS
659_bTo_pair	GUCY1A1	4	155666711	155732349	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	GUCY1A2	11	106674012	107018524	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	GUCY1B1	4	155758992	155807591	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	18	1	FALSE	HETLOSS	PASS
659_bTo_pair	GUCY2C	12	14612632	14696585	FALSE	753	-0.517160615058114	27	12726042	18242949	1	2	1	1	2	1	5516907	1	31	30	0	FALSE	DIPLOID	PASS
659_bTo_pair	GUCY2D	17	8002594	8020339	FALSE	1002	-0.806633716627379	14	7689340	8047671	0.365165917639896	1	0	0.365165917639896	1	0	358331	1	15	21	1	FALSE	HETLOSS	PASS
659_bTo_pair	GUCY2F	23	109372906	109482072	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	23	0	FALSE	AMP (many states)	PASS
659_bTo_pair	GUF1	4	44678427	44700926	FALSE	282	-0.204234033978701	47	41752697	49032685	0.365165917639896	3	1	0.365165917639896	3	1	7279988	2	31	17	2	FALSE	GAIN	PASS
659_bTo_pair	GUK1	1	228139962	228148984	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	GULP1	2	188291669	188595931	FALSE	159	-0.50094907723407	34	185815441	189771912	NA	2	NA	NA	2	NA	3956471	NA	17	11	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GUSB	7	65960684	65982314	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	14	2	FALSE	DIPLOID	PASS
659_bTo_pair	GVQW2	6	138725211	138773652	FALSE	429	-0.412609995390511	39	138092232	142443520	NA	2	NA	NA	2	NA	4351288	NA	18	2	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GVQW3	11	76381313	76414619	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	6	0	FALSE	GAIN	PASS
659_bTo_pair	GXYLT1	12	42081845	42144879	FALSE	764	-0.478463991093384	34	40959192	45805435	NA	2	NA	NA	2	NA	4846243	NA	16	8	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GXYLT2	3	72888073	72998138	FALSE	232	-0.785224171872638	14	72888305	88156485	0.365165917639896	1	0	0.365165917639896	1	0	15268180	1	18	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	GYG1	3	148991341	149027668	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	8	0	FALSE	GAIN	PASS
659_bTo_pair	GYG2	23	2828788	2882820	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	11	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	GYPA	4	144109303	144140786	FALSE	300	-0.423460920061428	34	143186078	151174790	NA	2	NA	NA	2	NA	7988712	NA	32	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GYPB	4	143996104	144019345	FALSE	300	-0.423460920061428	34	143186078	151174790	NA	2	NA	NA	2	NA	7988712	NA	32	5	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GYPC	2	126655933	126696670	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	GYPE	4	143870867	143905563	FALSE	300	-0.423460920061428	34	143186078	151174790	NA	2	NA	NA	2	NA	7988712	NA	32	3	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GYS1	19	48968125	48993310	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	18	1	FALSE	HETLOSS	PASS
659_bTo_pair	GYS2	12	21536189	21604847	FALSE	757	-0.490002350483383	34	21512373	25195063	NA	2	NA	NA	2	NA	3682690	NA	15	17	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	GZF1	20	23362182	23373063	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	11	2	FALSE	DIPLOID	PASS
659_bTo_pair	GZMA	5	55102648	55110252	FALSE	319	-0.764156631411702	19	50399919	56556187	0.365165917639896	1	0	0.365165917639896	1	0	6156268	1	28	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	GZMB	14	24630954	24634267	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	GZMH	14	24606480	24609699	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	GZMK	5	55024253	55034570	FALSE	319	-0.764156631411702	19	50399919	56556187	0.365165917639896	1	0	0.365165917639896	1	0	6156268	1	28	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	GZMM	19	544034	549924	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	H1F0	22	37805093	37807436	FALSE	1263	-0.528184158498335	29	36991204	37967644	NA	2	NA	NA	2	NA	976440	NA	31	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	H1FNT	12	48328980	48330279	FALSE	768	-0.491963868457131	34	48045387	49018767	NA	2	NA	NA	2	NA	973380	NA	28	4	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	H1FOO	3	129543214	129551467	FALSE	240	-0.311262736248051	40	128620554	130098189	0.308149309490068	3	1	0.308149309490068	3	1	1477635	2	22	7	0	FALSE	GAIN	PASS
659_bTo_pair	H1FX	3	129314771	129316277	FALSE	240	-0.311262736248051	40	128620554	130098189	0.308149309490068	3	1	0.308149309490068	3	1	1477635	2	22	3	0	FALSE	GAIN	PASS
659_bTo_pair	H2AFB1	23	154884972	154885558	FALSE	1341	-0.0231097163941018	55	154552015	155545250	0.328696605851359	4	NA	0.328696605851359	4	NA	993235	NA	23	1	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	H2AFJ	12	14774383	14778002	FALSE	753	-0.517160615058114	27	12726042	18242949	1	2	1	1	2	1	5516907	1	31	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	H2AFV	7	44826791	44848083	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	6	0	FALSE	GAIN	PASS
659_bTo_pair	H2AFX	11	119093854	119095467	FALSE	728	-0.487905654975058	30	118527582	119195409	1	2	1	1	2	1	667827	1	26	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	H2AFY	5	135333900	135399914	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	H2AFY2	10	70052796	70112280	FALSE	651	-0.523280686314431	28	68722553	70760843	0.351300687168522	2	0	0.351300687168522	2	0	2038290	2	27	8	0	FALSE	CNLOH	PASS
659_bTo_pair	H2AFZ	4	99948086	99950388	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	H2BFM	23	104039949	104042454	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	3	1	FALSE	AMP (many states)	PASS
659_bTo_pair	H2BFS	21	5972924	43565648	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	1824	125	TRUE	DIPLOID	PASS
659_bTo_pair	H2BFWT	23	104011147	104013687	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	3	1	FALSE	AMP (many states)	PASS
659_bTo_pair	H3.Y	5	17654870	17655847	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	2	0	FALSE	GAIN	PASS
659_bTo_pair	H3F3A	1	226061851	226072001	FALSE	74	1.34237097904705	87	226062891	226152402	0.364342740527346	16	NA	0.364342740527346	16	NA	89511	NA	2	14	0	FALSE	AMP	PASS
659_bTo_pair	H3F3B	17	75776434	75785893	FALSE	1076	-0.324328833861166	43	75741021	75776919	0.192136715055622	3	NA	0.192136715055622	3	NA	35898	NA	3	15	4	TRUE	GAIN (many states)	PASS
659_bTo_pair	H3F3C	12	31791185	31792241	FALSE	760	-0.171000692864655	50	31089058	38321207	0.218007130395584	4	2	0.218007130395584	4	2	7232149	2	15	4	1	FALSE	TETRAPLOID	PASS
659_bTo_pair	H6PD	1	9234775	9271337	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	HAAO	2	42767089	42792593	FALSE	106	-0.392858868113437	39	42335725	46184779	NA	2	NA	NA	2	NA	3849054	NA	22	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HABP2	10	113550837	113589602	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	15	0	FALSE	CNLOH	PASS
659_bTo_pair	HABP4	9	96450201	96491336	FALSE	608	-0.541405085979946	27	95522076	99069752	1	2	1	1	2	1	3547676	1	31	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	HACD1	10	17589032	17617377	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	8	0	FALSE	CNLOH	PASS
659_bTo_pair	HACD2	3	123490820	123585185	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	9	0	FALSE	GAIN	PASS
659_bTo_pair	HACD3	15	65530418	65578352	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	11	2	FALSE	HETLOSS	PASS
659_bTo_pair	HACD4	9	20999515	21031636	FALSE	583	-0.387007513258167	39	20715331	21839114	NA	2	NA	NA	2	NA	1123783	NA	21	8	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HACE1	6	104728093	104859919	FALSE	411	-0.455063723695114	34	95586870	106069771	NA	2	NA	NA	2	NA	10482901	NA	27	25	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HACL1	3	15560704	15601852	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	18	1	FALSE	HETLOSS	PASS
659_bTo_pair	HADH	4	107989714	108035175	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	HADHA	2	26190635	26244726	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	HADHB	2	26243170	26290468	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	HAGH	16	1795620	1827194	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	9	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	HAGHL	16	726936	735525	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	16	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	HAL	12	95972662	95996365	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	HAMP	19	35280716	35285143	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	HAND1	5	154474972	154478264	FALSE	351	-0.617975601907695	26	154002251	157057925	NA	2	NA	NA	2	NA	3055674	NA	15	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HAND2	4	173524969	173530229	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	HAO1	20	7882981	7940474	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	HAO2	1	119368779	119394130	FALSE	43	-0.890933866500247	13	117628427	119906570	0.365165917639896	1	0	0.365165917639896	1	0	2278143	1	13	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	HAP1	17	41717742	41734644	FALSE	1036	-0.764029118419186	19	41624551	42193564	0.365165917639896	1	0	0.365165917639896	1	0	569013	1	25	13	2	FALSE	HETLOSS	PASS
659_bTo_pair	HAPLN1	5	83637805	83721613	FALSE	327	-0.729214269739125	19	80961009	86619409	0.365165917639896	1	0	0.365165917639896	1	0	5658400	1	14	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	HAPLN2	1	156619294	156625725	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	HAPLN3	15	88877288	88895626	FALSE	923	-0.958549275925123	11	88459674	89218937	0.289956079954009	0	0	0.289956079954009	0	0	759263	0	11	8	4	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	HAPLN4	19	19255641	19262796	FALSE	1161	-0.292613860626304	46	19182590	19465611	0.298322295679939	3	NA	0.298322295679939	3	NA	283021	NA	10	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	HARBI1	11	46602861	46617909	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	HARS	5	140673904	140691862	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	14	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	HARS2	5	140691426	140699318	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	14	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	HAS1	19	51713112	51723994	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	HAS2	8	121612116	121641390	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	8	0	FALSE	GAIN	PASS
659_bTo_pair	HAS3	16	69105564	69118719	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HASPIN	17	3723903	3726699	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	HAT1	2	171922448	171983682	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	HAUS1	18	46104332	46128333	FALSE	1100	-0.758401070483502	19	45624783	47803983	0.365165917639896	1	0	0.365165917639896	1	0	2179200	1	22	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	HAUS2	15	42548810	42569994	FALSE	898	-0.892191685906218	12	42081573	42681446	0.365165917639896	1	0	0.365165917639896	1	0	599873	1	13	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	HAUS3	4	2227464	2242164	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	12	0	FALSE	GAIN	PASS
659_bTo_pair	HAUS4	14	22946228	22957161	FALSE	850	-0.604709518345526	26	22902059	23302562	NA	2	NA	NA	2	NA	400503	NA	18	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HAUS5	19	35612744	35625349	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	HAUS6	9	19053143	19103119	FALSE	581	-0.746183084602222	19	10618009	19786745	0.365165917639896	1	0	0.365165917639896	1	0	9168736	1	24	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	HAUS7	23	153447666	153495516	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	11	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	HAUS8	19	17049729	17075625	FALSE	1154	-0.533888138892061	27	16361883	17271664	1	2	1	1	2	1	909781	1	23	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	HAVCR1	5	157029413	157059119	FALSE	351	-0.617975601907695	26	154002251	157057925	NA	2	NA	NA	2	NA	3055674	NA	15	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HAVCR2	5	157085832	157142869	FALSE	352	1.22516965192658	84	157085760	157109237	0.364342740527346	14	NA	0.364342740527346	14	NA	23477	NA	1	18	1	TRUE	AMP	PASS
659_bTo_pair	HAX1	1	154272511	154275875	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	HBA1	16	176680	177522	FALSE	934	-0.725703643263354	19	47610	287124	0.365165917639896	1	0	0.365165917639896	1	0	239514	1	16	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	HBA2	16	172876	173710	FALSE	934	-0.725703643263354	19	47610	287124	0.365165917639896	1	0	0.365165917639896	1	0	239514	1	16	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	HBB	11	5225464	5229395	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	HBD	11	5232678	5243657	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	HBE1	11	5268345	5505652	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	45	13	FALSE	HETLOSS	PASS
659_bTo_pair	HBEGF	5	140332843	140346631	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	HBG1	11	5248079	5249859	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	HBG2	11	5253190	5505605	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	48	13	FALSE	HETLOSS	PASS
659_bTo_pair	HBM	16	153892	166768	FALSE	934	-0.725703643263354	19	47610	287124	0.365165917639896	1	0	0.365165917639896	1	0	239514	1	16	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	HBP1	7	107168961	107202529	FALSE	488	-0.464127371400283	34	107070260	116559206	NA	2	NA	NA	2	NA	9488946	NA	33	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HBQ1	16	180453	181181	FALSE	934	-0.725703643263354	19	47610	287124	0.365165917639896	1	0	0.365165917639896	1	0	239514	1	16	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	HBS1L	6	134960378	135103056	FALSE	425	-0.901875351716628	13	134918466	135054640	0.365165917639896	1	0	0.365165917639896	1	0	136174	1	2	24	0	FALSE	HETLOSS	PASS
659_bTo_pair	HBZ	16	152687	154503	FALSE	934	-0.725703643263354	19	47610	287124	0.365165917639896	1	0	0.365165917639896	1	0	239514	1	16	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	HCAR1	12	122726076	122730843	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	HCAR2	12	122701293	122703343	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	HCAR3	12	122714756	122716892	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	HCCS	23	11111301	11123078	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	6	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	HCFC1	23	153947553	153971807	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	40	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	HCFC1R1	16	3022620	3024286	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	HCFC2	12	104064457	104106524	FALSE	798	-0.492720037723834	34	102839233	105367537	NA	2	NA	NA	2	NA	2528304	NA	20	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HCK	20	32052188	32101856	FALSE	1201	-0.583226555890856	26	31757461	32331296	NA	2	NA	NA	2	NA	573835	NA	13	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HCLS1	3	121631399	121660927	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	13	3	FALSE	GAIN	PASS
659_bTo_pair	HCN1	5	45254950	45696498	FALSE	318	0.120209508736467	59	44809552	50399214	0.308533751035793	5	NA	0.308533751035793	5	NA	5589662	NA	3	14	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HCN2	19	589893	617159	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	13	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	HCN3	1	155277583	155289848	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	HCN4	15	73319859	73369264	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	HCRT	17	42184060	42185452	FALSE	1036	-0.764029118419186	19	41624551	42193564	0.365165917639896	1	0	0.365165917639896	1	0	569013	1	25	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	HCRTR1	1	31617686	31632518	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	HCRTR2	6	55106460	55282620	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	HCST	19	35902480	35904377	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	HDAC1	1	32292086	32333635	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	HDAC10	22	50245183	50251405	FALSE	1271	-0.350898193716427	41	45922979	50285791	0.284729887459054	3	0	0.284729887459054	3	0	4362812	3	30	19	2	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	HDAC11	3	13479724	13506424	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	HDAC2	6	113933028	114011308	FALSE	416	1.89764514173933	101	113933228	114057871	0.364342740527346	25	NA	0.364342740527346	25	NA	124643	NA	2	46	6	FALSE	AMP	PASS
659_bTo_pair	HDAC3	5	141620876	141636870	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HDAC4	2	239048168	239401654	TRUE	191	2.16820346137196	107	239048147	239053546	0.364342740527346	30	NA	0.364342740527346	30	NA	5399	NA	1	60	1	TRUE	AMP	PASS
659_bTo_pair	HDAC5	17	44076746	44123702	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	29	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HDAC6	23	48801377	48824982	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	30	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HDAC7	12	47782722	47833132	FALSE	766	-0.557616146966431	26	45922034	47968195	NA	2	NA	NA	2	NA	2046161	NA	13	25	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HDAC8	23	72329516	72573199	FALSE	1317	0.217996879888221	62	71533297	76176924	0.364342740527346	5	NA	0.364342740527346	5	NA	4643627	NA	35	13	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HDAC9	7	18086949	19002416	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	31	2	FALSE	GAIN	PASS
659_bTo_pair	HDC	15	50241947	50266026	FALSE	906	-0.753975485974629	19	49508303	51105073	0.365165917639896	1	0	0.365165917639896	1	0	1596770	1	12	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	HDDC2	6	125219962	125302078	FALSE	421	-0.534093125771784	29	117482879	126348569	NA	2	NA	NA	2	NA	8865690	NA	29	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HDDC3	15	90929964	90935196	FALSE	929	-0.700679172673924	22	90876261	92655591	0.291335969972972	1	0	0.291335969972972	1	0	1779330	1	13	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	HDGF	1	156742107	156766925	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	HDGFL1	6	22569493	22571666	FALSE	372	-0.417452461149977	39	20546469	24145837	NA	2	NA	NA	2	NA	3599368	NA	5	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HDGFL2	19	4472287	4502211	FALSE	1124	-0.62008955817668	23	4168484	5151543	0.186356639256811	1	0	0.186356639256811	1	0	983059	1	28	19	1	FALSE	HETLOSS	PASS
659_bTo_pair	HDGFL3	15	83112738	83208018	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	15	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	HDHD2	18	47107403	47150520	FALSE	1100	-0.758401070483502	19	45624783	47803983	0.365165917639896	1	0	0.365165917639896	1	0	2179200	1	22	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	HDHD3	9	113373419	113376999	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	HDHD5	22	17137511	17165287	FALSE	1240	-0.594689860601271	26	15528179	18606839	NA	2	NA	NA	2	NA	3078660	NA	21	10	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HDLBP	2	241227264	241317061	FALSE	194	-0.588828356865968	23	240025214	241817025	0.186356639256811	1	0	0.186356639256811	1	0	1791811	1	34	31	0	FALSE	HETLOSS	PASS
659_bTo_pair	HDX	23	84317874	84502479	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	13	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	HEATR1	1	236549005	236604504	FALSE	82	-0.550278310688863	27	235196044	241494870	1	2	1	1	2	1	6298826	1	22	49	0	FALSE	DIPLOID	PASS
659_bTo_pair	HEATR3	16	50065941	50106387	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	16	6	FALSE	DIPLOID	PASS
659_bTo_pair	HEATR4	14	73478484	73558947	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	29	0	FALSE	DIPLOID	PASS
659_bTo_pair	HEATR5A	14	31291791	31420582	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	37	1	FALSE	DIPLOID	PASS
659_bTo_pair	HEATR5B	2	36968383	37084342	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	41	2	FALSE	DIPLOID	PASS
659_bTo_pair	HEATR6	17	60043194	60078931	FALSE	1060	-0.47151484718074	34	59953129	60500406	NA	2	NA	NA	2	NA	547277	NA	7	24	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HEATR9	17	35854946	35868891	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	16	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	HEBP1	12	12974864	13000273	FALSE	753	-0.517160615058114	27	12726042	18242949	1	2	1	1	2	1	5516907	1	31	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	HEBP2	6	138403531	138422197	FALSE	429	-0.412609995390511	39	138092232	142443520	NA	2	NA	NA	2	NA	4351288	NA	18	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HECA	6	139135112	139180802	FALSE	429	-0.412609995390511	39	138092232	142443520	NA	2	NA	NA	2	NA	4351288	NA	18	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HECTD1	14	31100112	31207804	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	52	0	FALSE	DIPLOID	PASS
659_bTo_pair	HECTD2	10	91409280	91514829	FALSE	662	-0.410954559094016	36	89715119	94762760	0.365165917639896	2	0	0.365165917639896	2	0	5047641	2	33	22	0	FALSE	CNLOH	PASS
659_bTo_pair	HECTD3	1	45002540	45011329	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	HECTD4	12	112160188	112382439	FALSE	802	-0.463173510714366	34	111455064	112408626	NA	2	NA	NA	2	NA	953562	NA	12	85	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HECW1	7	43112599	43566001	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	34	0	FALSE	GAIN	PASS
659_bTo_pair	HECW2	2	196189099	196593692	FALSE	161	-0.46057869782823	30	190057617	197310624	1	2	1	1	2	1	7253007	1	23	33	1	FALSE	DIPLOID	PASS
659_bTo_pair	HEG1	3	124965710	125055958	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	26	7	FALSE	GAIN	PASS
659_bTo_pair	HELB	12	66302545	66347645	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	20	8	FALSE	DIPLOID	PASS
659_bTo_pair	HELLS	10	94501434	94613905	FALSE	662	-0.410954559094016	36	89715119	94762760	0.365165917639896	2	0	0.365165917639896	2	0	5047641	2	33	30	0	FALSE	CNLOH	PASS
659_bTo_pair	HELQ	4	83407343	83455856	FALSE	289	-0.397475195823872	39	80335777	83458331	NA	2	NA	NA	2	NA	3122554	NA	19	23	4	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HELT	4	185018841	185020804	FALSE	305	-0.853036814117495	12	184629284	186555336	0.365165917639896	1	0	0.365165917639896	1	0	1926052	1	22	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	HELZ	17	67070438	67245989	FALSE	1070	-0.476939588153593	30	65635933	68457397	1	2	1	1	2	1	2821464	1	18	40	2	FALSE	DIPLOID	PASS
659_bTo_pair	HELZ2	20	63558086	63574239	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	40	7	FALSE	DIPLOID	PASS
659_bTo_pair	HEMGN	9	97926791	97944856	FALSE	608	-0.541405085979946	27	95522076	99069752	1	2	1	1	2	1	3547676	1	31	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	HEMK1	3	50569152	50596168	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	HENMT1	1	108648290	108661526	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	HEPACAM	11	124919193	124936412	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	HEPACAM2	7	93188586	93226524	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	HEPH	23	66162549	66268867	FALSE	1307	-0.0742378241560309	55	64268602	66615968	0.328696605851359	4	NA	0.328696605851359	4	NA	2347366	NA	8	24	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	HEPHL1	11	94021361	94113751	FALSE	715	-0.44311716102168	34	90214063	94410681	NA	2	NA	NA	2	NA	4196618	NA	16	24	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HEPN1	11	124919244	124920677	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	HERC1	15	63608618	63833942	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	94	0	FALSE	HETLOSS	PASS
659_bTo_pair	HERC2	15	28111040	28322152	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	97	7	FALSE	HETLOSS	PASS
659_bTo_pair	HERC3	4	88592423	88708542	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	28	3	FALSE	DIPLOID	PASS
659_bTo_pair	HERC4	10	67921899	68075348	FALSE	649	-0.498971247588349	34	63133428	68527348	NA	2	NA	NA	2	NA	5393920	NA	15	24	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HERC5	4	88457117	88506163	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	26	0	FALSE	DIPLOID	PASS
659_bTo_pair	HERC6	4	88378739	88443111	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	25	0	FALSE	DIPLOID	PASS
659_bTo_pair	HERPUD1	16	56932048	56944863	FALSE	970	-0.446547319806241	34	56865490	57067828	NA	2	NA	NA	2	NA	202338	NA	4	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HERPUD2	7	35632659	35695571	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	9	0	FALSE	GAIN	PASS
659_bTo_pair	HES1	3	194136145	194138732	FALSE	269	-0.263219948753545	44	189957970	195888442	0.345317016959666	3	1	0.345317016959666	3	1	5930472	2	31	6	0	FALSE	GAIN	PASS
659_bTo_pair	HES2	1	6412418	6424670	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	HES3	1	6244192	6245578	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	HES4	1	998962	1000172	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	HES5	1	2528745	2530245	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	HES6	2	238238267	238240662	FALSE	190	-0.691419458816616	21	236392006	238848635	0.140309795179477	0	0	0.140309795179477	0	0	2456629	0	22	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	HES7	17	8120590	8124092	FALSE	1004	-0.905703364358502	13	8096639	8190110	0.365165917639896	1	0	0.365165917639896	1	0	93471	1	7	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	HESX1	3	57197838	57227606	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	HEXA	15	72340919	72376476	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	HEXB	5	74640023	74722647	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	17	2	FALSE	HETLOSS	PASS
659_bTo_pair	HEXDC	17	82418318	82442645	FALSE	1085	-0.607666454607286	26	82405295	83094473	NA	2	NA	NA	2	NA	689178	NA	13	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HEXIM1	17	45148502	45152101	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HEXIM2	17	45160700	45170040	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HEY1	8	79764010	79767863	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	8	1	FALSE	GAIN	PASS
659_bTo_pair	HEY2	6	125747664	125761269	FALSE	421	-0.534093125771784	29	117482879	126348569	NA	2	NA	NA	2	NA	8865690	NA	29	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HEYL	1	39624153	39639945	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	HFE	6	26087281	26098343	FALSE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	10	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HFM1	1	91260766	91404869	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	40	2	FALSE	DIPLOID	PASS
659_bTo_pair	HGD	3	120628173	120682571	FALSE	236	-0.555107352649266	26	120168171	121419120	NA	2	NA	NA	2	NA	1250949	NA	8	14	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HGF	7	81699008	81770438	FALSE	474	1.99321465919813	104	81699008	81770105	0.364342740527346	26	NA	0.364342740527346	26	NA	71097	NA	1	48	0	FALSE	AMP	PASS
659_bTo_pair	HGFAC	4	3441887	3449495	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	16	4	FALSE	GAIN	PASS
659_bTo_pair	HGH1	8	144137769	144140843	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	HGS	17	81683326	81703138	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	HGSNAT	8	43140455	43202855	FALSE	541	-0.815492706726597	16	42338595	47735321	0.365165917639896	1	0	0.365165917639896	1	0	5396726	1	15	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	HHAT	1	210328252	210676296	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	HHATL	3	42692663	42702827	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	13	3	FALSE	HETLOSS	PASS
659_bTo_pair	HHEX	10	92689951	92695646	FALSE	662	-0.410954559094016	36	89715119	94762760	0.365165917639896	2	0	0.365165917639896	2	0	5047641	2	33	6	0	FALSE	CNLOH	PASS
659_bTo_pair	HHIP	4	144646021	144745271	FALSE	300	-0.423460920061428	34	143186078	151174790	NA	2	NA	NA	2	NA	7988712	NA	32	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HHIPL1	14	99645110	99680569	FALSE	876	-0.546199181806584	27	96039535	102050530	1	2	1	1	2	1	6010995	1	30	15	2	FALSE	DIPLOID	PASS
659_bTo_pair	HHIPL2	1	222522258	222548103	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	HHLA1	8	132061486	132111159	FALSE	565	-0.282741903777565	44	129748604	134610527	0.345317016959666	3	1	0.345317016959666	3	1	4861923	2	18	18	2	FALSE	GAIN	PASS
659_bTo_pair	HHLA2	3	108296490	108378285	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	12	1	FALSE	GAIN	PASS
659_bTo_pair	HHLA3	1	70354805	70385339	FALSE	23	-0.326404897444941	43	65224778	71080923	0.192136715055622	3	NA	0.192136715055622	3	NA	5856145	NA	29	1	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	HIBADH	7	27525442	27662995	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	8	1	FALSE	GAIN	PASS
659_bTo_pair	HIBCH	2	190189735	190344193	FALSE	161	-0.46057869782823	30	190057617	197310624	1	2	1	1	2	1	7253007	1	23	16	3	FALSE	DIPLOID	PASS
659_bTo_pair	HIC1	17	2054154	2063241	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	HIC2	22	21417404	21451463	FALSE	1246	-0.481954888210425	34	21001894	21693896	NA	2	NA	NA	2	NA	692002	NA	14	8	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HID1	17	74950743	74973166	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	19	3	FALSE	DIPLOID	PASS
659_bTo_pair	HIF1A	14	61695513	61748259	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	HIF1AN	10	100529072	100559998	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	10	0	FALSE	CNLOH	PASS
659_bTo_pair	HIF3A	19	46297046	46343433	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	17	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	HIGD1A	3	42784298	42804531	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	HIGD1B	17	44846353	44850480	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HIGD1C	12	50953922	50970506	FALSE	772	-0.61197679162419	26	50109466	51920864	NA	2	NA	NA	2	NA	1811398	NA	27	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HIGD2A	5	176388747	176389771	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	HIGD2B	15	72675782	72686149	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	HIKESHI	11	86302211	86345931	FALSE	713	1.8602990076111	100	86201371	86302469	0.364342740527346	24	NA	0.364342740527346	24	NA	101098	NA	2	6	0	TRUE	AMP	PASS
659_bTo_pair	HILPDA	7	128455849	128458418	FALSE	492	-0.463656181520944	30	126439208	129166764	1	2	1	1	2	1	2727556	1	27	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	HINFP	11	119121587	119136044	FALSE	728	-0.487905654975058	30	118527582	119195409	1	2	1	1	2	1	667827	1	26	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	HINT1	5	131159027	131171735	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	HINT2	9	35812960	35815354	FALSE	591	0.73474920581053	74	35684233	36036976	0.364342740527346	9	NA	0.364342740527346	9	NA	352743	NA	17	5	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	HINT3	6	125956781	125980244	FALSE	421	-0.534093125771784	29	117482879	126348569	NA	2	NA	NA	2	NA	8865690	NA	29	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HIP1	7	75533300	75738962	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	31	2	FALSE	DIPLOID	PASS
659_bTo_pair	HIP1R	12	122834453	122862960	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	31	0	FALSE	DIPLOID	PASS
659_bTo_pair	HIPK1	1	113929192	113977869	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	21	3	FALSE	HETLOSS	PASS
659_bTo_pair	HIPK2	7	139561570	139777778	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	HIPK3	11	33256672	33357023	FALSE	692	-0.391103687852083	35	32583952	33774394	1	2	1	1	2	1	1190442	1	13	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	HIPK4	19	40379271	40390187	FALSE	1173	-0.760690164248215	19	40322104	40807873	0.365165917639896	1	0	0.365165917639896	1	0	485769	1	21	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	HIRA	22	19330698	19447450	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	33	2	FALSE	CNLOH	PASS
659_bTo_pair	HIRIP3	16	29992321	29996436	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	HIST1H1A	6	26017085	26017732	FALSE	373	-0.695027086668472	22	24174718	26017145	0.291335969972972	1	0	0.291335969972972	1	0	1842427	1	23	3	1	TRUE	HETLOSS	PASS
659_bTo_pair	HIST1H1B	6	27866849	27867529	TRUE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	HIST1H1C	6	26055787	26056428	FALSE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	3	1	FALSE	AMP (many states)	PASS
659_bTo_pair	HIST1H1D	6	26234268	26234933	TRUE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	2	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HIST1H1E	6	26156354	26157107	FALSE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	3	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HIST1H1T	6	26107419	26108136	FALSE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	3	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HIST1H2AA	6	25726132	25726527	FALSE	373	-0.695027086668472	22	24174718	26017145	0.291335969972972	1	0	0.291335969972972	1	0	1842427	1	23	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	HIST1H2AB	6	26033176	26033568	FALSE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	2	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HIST1H2AC	6	26124145	26139116	FALSE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	2	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HIST1H2AD	6	26198851	26199243	FALSE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	2	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HIST1H2AE	6	26216975	26217483	FALSE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	2	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HIST1H2AG	6	27133042	27135291	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	HIST1H2AH	6	27147129	27147515	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	HIST1H2AI	6	27808199	27808701	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	HIST1H2AJ	6	27814354	27814740	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	HIST1H2AK	6	27837947	27838339	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	HIST1H2AL	6	27865355	27865747	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	HIST1H2AM	6	27892757	27893149	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	HIST1H2BA	6	25726777	25727292	FALSE	373	-0.695027086668472	22	24174718	26017145	0.291335969972972	1	0	0.291335969972972	1	0	1842427	1	23	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	HIST1H2BB	6	26043277	26043657	FALSE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	1	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HIST1H2BC	6	26114873	26123926	FALSE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	2	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HIST1H2BD	6	26158146	26171349	FALSE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HIST1H2BE	6	26172059	26184655	FALSE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	2	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HIST1H2BF	6	26199520	26200715	FALSE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	2	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HIST1H2BG	6	26215159	26216692	FALSE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	2	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HIST1H2BH	6	26251651	26253710	FALSE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	2	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HIST1H2BI	6	26272976	26273356	FALSE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	2	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HIST1H2BJ	6	27125897	27132750	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	HIST1H2BK	6	27146418	27146798	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	HIST1H2BL	6	27807444	27807931	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	HIST1H2BM	6	27815044	27815424	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	HIST1H2BN	6	27837760	27865798	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	HIST1H2BO	6	27893463	27893843	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	HIST1H3A	6	26020490	26020900	FALSE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	2	1	FALSE	AMP (many states)	PASS
659_bTo_pair	HIST1H3B	6	26031650	26032060	FALSE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	3	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HIST1H3C	6	26045411	26045821	FALSE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	2	1	FALSE	AMP (many states)	PASS
659_bTo_pair	HIST1H3D	6	26196840	26197250	FALSE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	2	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HIST1H3E	6	26224199	26227473	FALSE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	11	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HIST1H3F	6	26250195	26250605	FALSE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	1	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HIST1H3G	6	26269405	26271815	FALSE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	3	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HIST1H3H	6	27810064	27811300	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	HIST1H3I	6	27871905	27872315	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	2	1	FALSE	DIPLOID	PASS
659_bTo_pair	HIST1H3J	6	27890382	27893106	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	HIST1H4A	6	26021679	26021990	FALSE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	1	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HIST1H4B	6	26026815	26027252	FALSE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	2	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HIST1H4C	6	26103876	26104310	FALSE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	2	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HIST1H4D	6	26188765	26189076	FALSE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	2	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HIST1H4E	6	26204552	26206038	FALSE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	2	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HIST1H4F	6	26240426	26240737	FALSE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	2	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HIST1H4G	6	26246681	26246977	FALSE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	1	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HIST1H4H	6	26277609	26285638	FALSE	374	0.155599730159391	60	26017409	26370432	0.364342740527346	5	NA	0.364342740527346	5	NA	353023	NA	35	2	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HIST1H4I	6	27138588	27139881	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	HIST1H4J	6	27824108	27824480	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	HIST1H4K	6	27831216	27831527	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	HIST1H4L	6	27873199	27873510	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	HIST2H2AB	1	149887524	149887916	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	HIST2H2AC	1	149886975	149887364	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	HIST2H2BE	1	149884459	149886652	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	HIST2H2BF	1	149782689	149812373	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	HIST2H3D	1	149813271	149813681	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	HIST2H3PS2	1	143905556	143905966	FALSE	44	-0.0508975396039555	55	119911615	146019534	0.328696605851359	4	NA	0.328696605851359	4	NA	26107919	NA	33	2	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	HIST3H2A	1	228456979	228457873	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	HIST3H2BB	1	228458107	228460470	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	HIST3H3	1	228424845	228425325	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	2	1	FALSE	HETLOSS	PASS
659_bTo_pair	HIST4H4	12	14767999	14771131	FALSE	753	-0.517160615058114	27	12726042	18242949	1	2	1	1	2	1	5516907	1	31	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	HIVEP1	6	12008762	12164999	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	37	1	FALSE	DIPLOID	PASS
659_bTo_pair	HIVEP2	6	142751467	142956698	FALSE	430	1.65255482464458	96	142751538	143061074	0.364342740527346	20	NA	0.364342740527346	20	NA	309536	NA	2	49	1	FALSE	AMP	PASS
659_bTo_pair	HIVEP3	1	41506365	42035925	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	31	0	FALSE	DIPLOID	PASS
659_bTo_pair	HJURP	2	233833416	233854566	FALSE	189	-0.580904316133535	23	233779383	236380649	0.186356639256811	1	0	0.186356639256811	1	0	2601266	1	10	15	4	FALSE	HETLOSS	PASS
659_bTo_pair	HJV	1	146017468	146036746	FALSE	44	-0.0508975396039555	55	119911615	146019534	0.328696605851359	4	NA	0.328696605851359	4	NA	26107919	NA	33	7	0	TRUE	GAIN (many states)	PASS
659_bTo_pair	HK1	10	69269984	69401884	FALSE	651	-0.523280686314431	28	68722553	70760843	0.351300687168522	2	0	0.351300687168522	2	0	2038290	2	27	25	1	FALSE	CNLOH	PASS
659_bTo_pair	HK2	2	74833981	74893359	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	22	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HK3	5	176880869	176899332	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	HKDC1	10	69220303	69267559	FALSE	651	-0.523280686314431	28	68722553	70760843	0.351300687168522	2	0	0.351300687168522	2	0	2038290	2	27	20	2	FALSE	CNLOH	PASS
659_bTo_pair	HKR1	19	37312837	37369365	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	HLA-A	6	29941260	29945884	TRUE	376	1.6187023515367	92	29722917	29951997	0.364342740527346	20	10	0.364342740527346	20	10	229080	10	3	15	11	FALSE	AMP	PASS
659_bTo_pair	HLA-B	6	31269491	31357188	TRUE	379	-0.524744136561063	27	30546321	31270541	1	2	1	1	2	1	724220	1	30	27	14	TRUE	DIPLOID	PASS
659_bTo_pair	HLA-C	6	31268749	31272130	FALSE	379	-0.524744136561063	27	30546321	31270541	1	2	1	1	2	1	724220	1	30	11	6	TRUE	DIPLOID	PASS
659_bTo_pair	HLA-DMA	6	32948613	32969094	FALSE	386	1.33899290827375	87	32934647	32952978	0.364342740527346	16	NA	0.364342740527346	16	NA	18331	NA	3	10	0	TRUE	AMP	PASS
659_bTo_pair	HLA-DMB	6	32934629	32941070	FALSE	386	1.33899290827375	87	32934647	32952978	0.364342740527346	16	NA	0.364342740527346	16	NA	18331	NA	3	10	0	FALSE	AMP	PASS
659_bTo_pair	HLA-DOA	6	33004178	33009612	FALSE	388	1.43024657961061	88	33004380	33089663	0.364342740527346	17	NA	0.364342740527346	17	NA	85283	NA	3	14	7	FALSE	AMP	PASS
659_bTo_pair	HLA-DOB	6	32812763	32820466	FALSE	384	1.23562607887413	84	32741402	32820318	0.364342740527346	14	NA	0.364342740527346	14	NA	78916	NA	4	11	4	FALSE	AMP	PASS
659_bTo_pair	HLA-DPA1	6	33064569	33080775	FALSE	388	1.43024657961061	88	33004380	33089663	0.364342740527346	17	NA	0.364342740527346	17	NA	85283	NA	3	18	0	FALSE	AMP	PASS
659_bTo_pair	HLA-DPB1	6	33075926	33087201	FALSE	388	1.43024657961061	88	33004380	33089663	0.364342740527346	17	NA	0.364342740527346	17	NA	85283	NA	3	11	0	FALSE	AMP	PASS
659_bTo_pair	HLA-DQA1	6	32628179	32647062	FALSE	383	-0.968299702674037	10	32229163	32666708	0.299127672235157	0	0	0.299127672235157	0	0	437545	0	7	9	2	FALSE	HOMDEL	PASS
659_bTo_pair	HLA-DQA2	6	32741342	32747215	FALSE	384	1.23562607887413	84	32741402	32820318	0.364342740527346	14	NA	0.364342740527346	14	NA	78916	NA	4	9	8	FALSE	AMP	PASS
659_bTo_pair	HLA-DQB1	6	32659467	32668383	FALSE	383	-0.968299702674037	10	32229163	32666708	0.299127672235157	0	0	0.299127672235157	0	0	437545	0	7	12	2	FALSE	HOMDEL	PASS
659_bTo_pair	HLA-DQB2	6	32756098	32763534	FALSE	384	1.23562607887413	84	32741402	32820318	0.364342740527346	14	NA	0.364342740527346	14	NA	78916	NA	4	11	1	FALSE	AMP	PASS
659_bTo_pair	HLA-DRA	6	32439842	32445046	FALSE	383	-0.968299702674037	10	32229163	32666708	0.299127672235157	0	0	0.299127672235157	0	0	437545	0	7	8	1	FALSE	HOMDEL	PASS
659_bTo_pair	HLA-DRB1	6	32578769	32589848	FALSE	383	-0.968299702674037	10	32229163	32666708	0.299127672235157	0	0	0.299127672235157	0	0	437545	0	7	7	6	FALSE	HOMDEL	PASS
659_bTo_pair	HLA-DRB5	6	32517343	32530287	FALSE	383	-0.968299702674037	10	32229163	32666708	0.299127672235157	0	0	0.299127672235157	0	0	437545	0	7	8	8	FALSE	HOMDEL	PASS
659_bTo_pair	HLA-E	6	30489467	30494205	FALSE	378	2.18184456916179	108	30489517	30494213	0.364342740527346	31	NA	0.364342740527346	31	NA	4696	NA	1	14	1	FALSE	AMP	PASS
659_bTo_pair	HLA-F	6	29722775	29738528	FALSE	376	1.6187023515367	92	29722917	29951997	0.364342740527346	20	10	0.364342740527346	20	10	229080	10	3	21	0	FALSE	AMP	PASS
659_bTo_pair	HLA-G	6	29826967	29831125	FALSE	376	1.6187023515367	92	29722917	29951997	0.364342740527346	20	10	0.364342740527346	20	10	229080	10	3	12	0	FALSE	AMP	PASS
659_bTo_pair	HLCS	21	36750888	36990236	FALSE	1228	-0.430637379115077	30	36009679	38367602	1	2	1	1	2	1	2357923	1	17	15	2	FALSE	DIPLOID	PASS
659_bTo_pair	HLF	17	55265012	55325065	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HLTF	3	149030127	149086554	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	26	0	FALSE	GAIN	PASS
659_bTo_pair	HLX	1	220879400	220885059	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	HM13	20	31514410	31577923	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	HMBOX1	8	28890394	29064764	FALSE	523	-1.08188475411826	8	27469296	29263060	0.342391532111247	0	0	0.342391532111247	0	0	1793764	0	18	13	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	HMBS	11	119084866	119093549	FALSE	728	-0.487905654975058	30	118527582	119195409	1	2	1	1	2	1	667827	1	26	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	HMCES	3	129278828	129306186	FALSE	240	-0.311262736248051	40	128620554	130098189	0.308149309490068	3	1	0.308149309490068	3	1	1477635	2	22	6	0	FALSE	GAIN	PASS
659_bTo_pair	HMCN1	1	185734551	186190949	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	120	8	FALSE	DIPLOID	PASS
659_bTo_pair	HMCN2	9	130265882	130434123	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	102	3	FALSE	HETLOSS	PASS
659_bTo_pair	HMG20A	15	77420412	77485607	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	HMG20B	19	3572777	3579088	FALSE	1122	-0.653400653967241	21	3157829	4037863	0.140309795179477	0	0	0.140309795179477	0	0	880034	0	27	9	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	HMGA1	6	34236873	34246231	FALSE	391	-0.499783837646083	34	33391964	35241176	NA	2	NA	NA	2	NA	1849212	NA	26	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HMGA2	12	65824131	65966295	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	HMGB1	13	30456704	30617597	FALSE	828	-0.893717680890687	13	28659152	32311865	0.365165917639896	1	0	0.365165917639896	1	0	3652713	1	17	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	HMGB2	4	173331695	173335125	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	HMGB3	23	150980509	150990775	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	5	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	HMGB4	1	33860475	33864791	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	HMGCL	1	23801885	23838620	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	HMGCLL1	6	55434369	55579214	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	HMGCR	5	75336329	75362104	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	HMGCS1	5	43289395	43313512	FALSE	316	-0.143574193475256	49	39021030	43704252	0.365165917639896	3	1	0.365165917639896	3	1	4683222	2	28	10	0	FALSE	GAIN	PASS
659_bTo_pair	HMGCS2	1	119747996	119768905	FALSE	43	-0.890933866500247	13	117628427	119906570	0.365165917639896	1	0	0.365165917639896	1	0	2278143	1	13	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	HMGN1	21	39342315	39349647	FALSE	1230	-0.572411047461507	26	38805300	41452836	NA	2	NA	NA	2	NA	2647536	NA	17	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HMGN2	1	26472450	26475972	FALSE	11	-0.0648968270692269	55	26460136	26787177	0.328696605851359	4	NA	0.328696605851359	4	NA	327041	NA	4	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	HMGN3	6	79201245	79234738	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	HMGN4	6	26538405	26546254	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	HMGN5	23	81113701	81201942	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	8	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	HMGXB3	5	150000046	150053142	FALSE	344	-0.892413249330443	13	149616577	150050506	0.365165917639896	1	0	0.365165917639896	1	0	433929	1	6	26	0	TRUE	HETLOSS	PASS
659_bTo_pair	HMGXB4	22	35257452	35295807	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	13	1	FALSE	CNLOH	PASS
659_bTo_pair	HMHB1	5	143812161	143820719	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	HMMR	5	163460203	163491945	FALSE	356	-0.773912908266316	17	162095550	171298806	0.365165917639896	1	0	0.365165917639896	1	0	9203256	1	21	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	HMOX1	22	35380361	35394214	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	6	0	FALSE	CNLOH	PASS
659_bTo_pair	HMOX2	16	4474690	4510347	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	HMSD	18	63949301	63981774	FALSE	1111	-0.872352968035647	12	63331800	74584528	0.365165917639896	1	0	0.365165917639896	1	0	11252728	1	31	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	HMX1	4	8846076	8871817	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	6	1	FALSE	GAIN	PASS
659_bTo_pair	HMX2	10	123148122	123150672	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	5	0	FALSE	CNLOH	PASS
659_bTo_pair	HMX3	10	123135962	123137741	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	5	0	FALSE	CNLOH	PASS
659_bTo_pair	HNF1A	12	120978543	121002512	TRUE	811	1.75173703505587	98	120978522	121005021	0.364342740527346	22	NA	0.364342740527346	22	NA	26499	NA	2	26	0	FALSE	AMP	PASS
659_bTo_pair	HNF1B	17	37686432	37745247	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	10	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	HNF4A	20	44355700	44434596	FALSE	1210	-0.476296426145969	34	43513997	45110019	NA	2	NA	NA	2	NA	1596022	NA	26	15	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HNF4G	8	75407914	75566843	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	10	0	FALSE	GAIN	PASS
659_bTo_pair	HNMT	2	137964020	138016364	FALSE	145	-0.807795522727044	16	136882284	138780220	0.365165917639896	1	0	0.365165917639896	1	0	1897936	1	4	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	HNRNPA0	5	137745651	137754376	FALSE	336	-0.752536733071469	19	135941639	138575278	0.365165917639896	1	0	0.365165917639896	1	0	2633639	1	24	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	HNRNPA1	12	54280193	54287088	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	HNRNPA1L2	13	52642425	52643796	FALSE	836	-0.444239733377228	32	50956423	72747004	0.365165917639896	2	0	0.365165917639896	2	0	21790581	2	40	4	3	FALSE	CNLOH	PASS
659_bTo_pair	HNRNPA2B1	7	26173057	26201529	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	19	0	FALSE	GAIN	PASS
659_bTo_pair	HNRNPA3	2	177212563	177223958	FALSE	153	-0.469039793655258	34	172736055	177217715	NA	2	NA	NA	2	NA	4481660	NA	28	22	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	HNRNPAB	5	178204507	178211163	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	HNRNPC	14	21209136	21269494	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	HNRNPCL1	1	12847408	12848725	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	HNRNPCL2	1	13115496	13116854	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	HNRNPD	4	82352498	82374503	FALSE	289	-0.397475195823872	39	80335777	83458331	NA	2	NA	NA	2	NA	3122554	NA	19	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HNRNPDL	4	82422564	82430408	FALSE	289	-0.397475195823872	39	80335777	83458331	NA	2	NA	NA	2	NA	3122554	NA	19	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HNRNPF	10	43385617	43409166	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	6	1	FALSE	CNLOH	PASS
659_bTo_pair	HNRNPH1	5	179614178	179634784	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	HNRNPH2	23	101408295	101414133	FALSE	1321	0.439394403838451	66	101391440	103377786	0.364342740527346	7	NA	0.364342740527346	7	NA	1986346	NA	34	6	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	HNRNPH3	10	68331174	68343191	FALSE	649	-0.498971247588349	34	63133428	68527348	NA	2	NA	NA	2	NA	5393920	NA	15	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HNRNPK	9	83968083	83980616	FALSE	599	1.4565496261993	90	83968286	83980567	0.364342740527346	17	NA	0.364342740527346	17	NA	12281	NA	1	29	2	FALSE	AMP	PASS
659_bTo_pair	HNRNPL	19	38836388	38852347	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	HNRNPLL	2	38561978	38603586	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	HNRNPM	19	8444767	8489114	FALSE	1132	-0.583194501817822	26	7916513	8843246	NA	2	NA	NA	2	NA	926733	NA	25	19	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HNRNPR	1	23303771	23344336	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	HNRNPU	1	244840638	244864560	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	HNRNPUL1	19	41262496	41307598	FALSE	1175	-0.78792654264608	16	41264609	41322635	0.365165917639896	1	0	0.365165917639896	1	0	58026	1	3	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	HNRNPUL2	11	62712630	62727472	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	18	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	HNRNPUL2-BSCL2	11	62690275	62727384	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	32	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	HOGA1	10	97584323	97612802	FALSE	664	-0.371799025630062	36	96955124	97864220	0.365165917639896	2	0	0.365165917639896	2	0	909096	2	23	11	0	FALSE	CNLOH	PASS
659_bTo_pair	HOMER1	5	79372636	79514217	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	HOMER2	15	82836946	82986153	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	9	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	HOMER3	19	18929201	18941261	FALSE	1159	-0.165917001507678	49	18177228	19138502	0.365165917639896	3	1	0.365165917639896	3	1	961274	2	36	9	0	FALSE	GAIN	PASS
659_bTo_pair	HOMEZ	14	23272422	23299447	FALSE	850	-0.604709518345526	26	22902059	23302562	NA	2	NA	NA	2	NA	400503	NA	18	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HOOK1	1	59814786	59876378	FALSE	21	-0.414935064922519	39	59321678	64830856	NA	2	NA	NA	2	NA	5509178	NA	22	22	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HOOK2	19	12763003	12872740	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	73	3	FALSE	DIPLOID	PASS
659_bTo_pair	HOOK3	8	42896932	43030539	FALSE	541	-0.815492706726597	16	42338595	47735321	0.365165917639896	1	0	0.365165917639896	1	0	5396726	1	15	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	HOPX	4	56647988	56681899	FALSE	285	-0.676685623676823	22	55346376	64409389	0.291335969972972	1	0	0.291335969972972	1	0	9063013	1	23	4	2	FALSE	HETLOSS	PASS
659_bTo_pair	HORMAD1	1	150698060	150720888	FALSE	47	-0.642778549638746	26	150622836	150876589	NA	2	NA	NA	2	NA	253753	NA	6	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HORMAD2	22	30080174	30177075	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	10	0	FALSE	CNLOH	PASS
659_bTo_pair	HOXA1	7	27092993	27095996	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	5	0	FALSE	GAIN	PASS
659_bTo_pair	HOXA10	7	27170591	27180261	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	6	0	FALSE	GAIN	PASS
659_bTo_pair	HOXA11	7	27181510	27185223	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	5	0	FALSE	GAIN	PASS
659_bTo_pair	HOXA13	7	27193503	27200106	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	6	0	FALSE	GAIN	PASS
659_bTo_pair	HOXA2	7	27100354	27102811	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	6	0	FALSE	GAIN	PASS
659_bTo_pair	HOXA3	7	27106184	27152581	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	20	1	FALSE	GAIN	PASS
659_bTo_pair	HOXA4	7	27128507	27130799	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	5	1	FALSE	GAIN	PASS
659_bTo_pair	HOXA5	7	27141052	27143668	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	4	0	FALSE	GAIN	PASS
659_bTo_pair	HOXA6	7	27145396	27150603	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	4	0	FALSE	GAIN	PASS
659_bTo_pair	HOXA7	7	27153716	27157936	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	4	1	FALSE	GAIN	PASS
659_bTo_pair	HOXA9	7	27162435	27175180	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	10	0	FALSE	GAIN	PASS
659_bTo_pair	HOXB1	17	48528526	48531001	FALSE	1049	-0.703360644300681	22	47810585	48529853	0.291335969972972	1	0	0.291335969972972	1	0	719268	1	15	5	0	TRUE	HETLOSS	PASS
659_bTo_pair	HOXB13	17	48724763	48729178	TRUE	1050	0.118579818885908	59	48530521	48770002	0.308533751035793	5	NA	0.308533751035793	5	NA	239481	NA	13	14	2	FALSE	AMP (many states)	PASS
659_bTo_pair	HOXB2	17	48540894	48544989	FALSE	1050	0.118579818885908	59	48530521	48770002	0.308533751035793	5	NA	0.308533751035793	5	NA	239481	NA	13	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HOXB3	17	48548870	48604912	FALSE	1050	0.118579818885908	59	48530521	48770002	0.308533751035793	5	NA	0.308533751035793	5	NA	239481	NA	13	17	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HOXB4	17	48575513	48580111	FALSE	1050	0.118579818885908	59	48530521	48770002	0.308533751035793	5	NA	0.308533751035793	5	NA	239481	NA	13	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HOXB5	17	48591257	48593961	FALSE	1050	0.118579818885908	59	48530521	48770002	0.308533751035793	5	NA	0.308533751035793	5	NA	239481	NA	13	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HOXB6	17	48595751	48604992	FALSE	1050	0.118579818885908	59	48530521	48770002	0.308533751035793	5	NA	0.308533751035793	5	NA	239481	NA	13	3	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HOXB7	17	48607227	48633572	FALSE	1050	0.118579818885908	59	48530521	48770002	0.308533751035793	5	NA	0.308533751035793	5	NA	239481	NA	13	10	1	FALSE	AMP (many states)	PASS
659_bTo_pair	HOXB8	17	48611377	48614939	FALSE	1050	0.118579818885908	59	48530521	48770002	0.308533751035793	5	NA	0.308533751035793	5	NA	239481	NA	13	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HOXB9	17	48621159	48626356	FALSE	1050	0.118579818885908	59	48530521	48770002	0.308533751035793	5	NA	0.308533751035793	5	NA	239481	NA	13	3	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HOXC10	12	53985065	53990279	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	HOXC11	12	53973126	53977643	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	HOXC12	12	53954834	53958956	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	HOXC13	12	53938765	53946544	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	HOXC4	12	54016931	54056030	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	HOXC5	12	54032853	54035358	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	HOXC6	12	53990624	54030823	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	HOXC8	12	54009106	54012362	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	HOXC9	12	53994895	54003337	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	HOXD1	2	176188579	176190907	FALSE	153	-0.469039793655258	34	172736055	177217715	NA	2	NA	NA	2	NA	4481660	NA	28	5	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HOXD10	2	176108790	176119942	FALSE	153	-0.469039793655258	34	172736055	177217715	NA	2	NA	NA	2	NA	4481660	NA	28	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HOXD11	2	176104216	176109754	FALSE	153	-0.469039793655258	34	172736055	177217715	NA	2	NA	NA	2	NA	4481660	NA	28	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HOXD12	2	176099730	176101193	FALSE	153	-0.469039793655258	34	172736055	177217715	NA	2	NA	NA	2	NA	4481660	NA	28	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HOXD13	2	176092891	176095938	FALSE	153	-0.469039793655258	34	172736055	177217715	NA	2	NA	NA	2	NA	4481660	NA	28	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HOXD3	2	176136612	176173102	FALSE	153	-0.469039793655258	34	172736055	177217715	NA	2	NA	NA	2	NA	4481660	NA	28	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HOXD4	2	176151222	176153226	FALSE	153	-0.469039793655258	34	172736055	177217715	NA	2	NA	NA	2	NA	4481660	NA	28	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HOXD8	2	176129694	176132695	FALSE	153	-0.469039793655258	34	172736055	177217715	NA	2	NA	NA	2	NA	4481660	NA	28	5	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HOXD9	2	176122720	176124937	FALSE	153	-0.469039793655258	34	172736055	177217715	NA	2	NA	NA	2	NA	4481660	NA	28	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HP	16	72054592	72061055	FALSE	983	-0.428709389755029	30	71178941	72171154	1	2	1	1	2	1	992213	1	22	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	HP1BP3	1	20742661	20787323	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	HPCA	1	32885994	32898441	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	HPCAL1	2	10302889	10427617	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	HPCAL4	1	39678648	39691689	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	HPD	12	121839527	121863596	FALSE	813	1.84084887353134	100	121804799	121847106	0.364342740527346	23	NA	0.364342740527346	23	NA	42307	NA	2	14	2	TRUE	AMP	PASS
659_bTo_pair	HPDL	1	45326905	45328533	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	HPF1	4	169729465	169757953	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	HPGD	4	174490177	174523154	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	HPGDS	4	94298535	94342876	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	HPN	19	35040506	35066571	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	HPR	16	72063148	72077246	FALSE	983	-0.428709389755029	30	71178941	72171154	1	2	1	1	2	1	992213	1	22	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	HPRT1	23	134460153	134520513	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	HPS1	10	98416198	98446947	FALSE	666	-0.516928660882684	29	98163350	100063639	NA	2	NA	NA	2	NA	1900289	NA	16	19	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HPS3	3	149129584	149173732	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	21	0	FALSE	GAIN	PASS
659_bTo_pair	HPS4	22	26443423	26483837	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	18	0	FALSE	CNLOH	PASS
659_bTo_pair	HPS5	11	18278668	18322198	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	27	1	FALSE	DIPLOID	PASS
659_bTo_pair	HPS6	10	102065390	102068038	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	9	0	FALSE	CNLOH	PASS
659_bTo_pair	HPSE	4	83292461	83335153	FALSE	289	-0.397475195823872	39	80335777	83458331	NA	2	NA	NA	2	NA	3122554	NA	19	12	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HPSE2	10	98457077	99235862	FALSE	666	-0.516928660882684	29	98163350	100063639	NA	2	NA	NA	2	NA	1900289	NA	16	14	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HPX	11	6431049	6442617	FALSE	682	-0.308581000695747	43	6240079	6614875	0.192136715055622	3	NA	0.192136715055622	3	NA	374796	NA	15	11	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	HR	8	22114415	22133384	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	24	0	FALSE	HETLOSS	PASS
659_bTo_pair	HRAS	11	532242	537287	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	8	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	HRASLS	3	193241125	193277738	FALSE	269	-0.263219948753545	44	189957970	195888442	0.345317016959666	3	1	0.345317016959666	3	1	5930472	2	31	8	0	FALSE	GAIN	PASS
659_bTo_pair	HRASLS2	11	63552770	63563383	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	HRASLS5	11	63461404	63491194	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	7	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	HRC	19	49151198	49155424	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	HRCT1	9	35906192	35907141	FALSE	591	0.73474920581053	74	35684233	36036976	0.364342740527346	9	NA	0.364342740527346	9	NA	352743	NA	17	2	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	HRG	3	186660216	186678240	FALSE	263	-0.396590537714608	39	186161612	186743777	NA	2	NA	NA	2	NA	582165	NA	9	10	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HRH1	3	11137093	11263557	FALSE	199	-1.0441448018759	8	10200366	12187515	0.342391532111247	0	0	0.342391532111247	0	0	1987149	0	14	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	HRH2	5	175658030	175710756	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	HRH3	20	62214970	62220267	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	HRH4	18	24460629	24479957	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	6	0	FALSE	GAIN	PASS
659_bTo_pair	HRK	12	116856144	116881441	FALSE	808	-0.531025796359709	27	115966146	120090026	1	2	1	1	2	1	4123880	1	23	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	HRNR	1	152212082	152224193	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	29	5	FALSE	DIPLOID	PASS
659_bTo_pair	HS1BP3	2	20560448	20651089	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	7	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HS2ST1	1	86914648	87109998	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	HS3ST1	4	11393150	11429765	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	4	0	FALSE	GAIN	PASS
659_bTo_pair	HS3ST2	16	22814177	22916338	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	HS3ST3A1	17	13495689	13601927	FALSE	1009	-0.493836167698037	33	12666172	16027364	0.344071079426502	2	0	0.344071079426502	2	0	3361192	2	21	6	1	FALSE	CNLOH	PASS
659_bTo_pair	HS3ST3B1	17	14301083	14349404	FALSE	1009	-0.493836167698037	33	12666172	16027364	0.344071079426502	2	0	0.344071079426502	2	0	3361192	2	21	6	0	FALSE	CNLOH	PASS
659_bTo_pair	HS3ST4	16	25692026	26137688	FALSE	960	-0.449512584299377	34	23658521	27234165	NA	2	NA	NA	2	NA	3575644	NA	16	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HS3ST5	6	114055586	114343045	FALSE	416	1.89764514173933	101	113933228	114057871	0.364342740527346	25	NA	0.364342740527346	25	NA	124643	NA	2	5	0	TRUE	AMP	PASS
659_bTo_pair	HS3ST6	16	1911463	1918440	FALSE	937	-1.70810798820954	2	1834331	1946734	0.364342740527346	0	0	0.364342740527346	0	0	112403	0	5	5	1	FALSE	HOMDEL	PASS
659_bTo_pair	HS6ST1	2	128236716	128318577	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	HS6ST2	23	132626016	132961395	FALSE	1335	0.100243493544559	59	130066940	134244999	0.308533751035793	5	NA	0.308533751035793	5	NA	4178059	NA	21	11	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HS6ST3	13	96090839	96839562	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	6	0	FALSE	CNLOH	PASS
659_bTo_pair	HSBP1	16	83807843	83819737	FALSE	987	-0.578642888038652	23	81999201	85806436	0.186356639256811	1	0	0.186356639256811	1	0	3807235	1	31	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	HSBP1L1	18	79964561	79970822	FALSE	1113	-0.883471952658051	12	75410842	80247341	0.365165917639896	1	0	0.365165917639896	1	0	4836499	1	17	4	2	FALSE	HETLOSS	PASS
659_bTo_pair	HSCB	22	28742031	28757515	FALSE	1255	0.261638839895489	63	28687966	29044744	0.364342740527346	6	NA	0.364342740527346	6	NA	356778	NA	5	8	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HSD11B1	1	209686178	209734950	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	HSD11B1L	19	5680604	5688523	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	HSD11B2	16	67430652	67437553	FALSE	976	-0.467350965811123	34	67110264	67538977	NA	2	NA	NA	2	NA	428713	NA	24	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HSD17B1	17	42549214	42555213	FALSE	1038	-0.623371137159426	26	42404937	42698887	NA	2	NA	NA	2	NA	293950	NA	13	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HSD17B10	23	53431258	53434373	FALSE	1303	0.0232492223836125	56	53426353	57488811	0.365165917639896	4	NA	0.365165917639896	4	NA	4062458	NA	32	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	HSD17B11	4	87336610	87391386	FALSE	291	-0.458701040497953	34	83536708	87613131	NA	2	NA	NA	2	NA	4076423	NA	17	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HSD17B12	11	43680558	43856617	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	11	2	FALSE	DIPLOID	PASS
659_bTo_pair	HSD17B13	4	87303789	87322906	FALSE	291	-0.458701040497953	34	83536708	87613131	NA	2	NA	NA	2	NA	4076423	NA	17	8	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HSD17B14	19	48813017	48836678	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	HSD17B2	16	82035004	82098534	FALSE	987	-0.578642888038652	23	81999201	85806436	0.186356639256811	1	0	0.186356639256811	1	0	3807235	1	31	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	HSD17B3	9	96235306	96302176	FALSE	608	-0.541405085979946	27	95522076	99069752	1	2	1	1	2	1	3547676	1	31	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	HSD17B4	5	119452443	119637199	FALSE	331	-0.706980197323045	20	112861366	122075379	0.365165917639896	1	0	0.365165917639896	1	0	9214013	1	31	32	2	FALSE	HETLOSS	PASS
659_bTo_pair	HSD17B6	12	56752161	56787790	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	7	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HSD17B7	1	162790702	162812817	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	10	4	FALSE	DIPLOID	PASS
659_bTo_pair	HSD17B8	6	33204642	33206831	FALSE	389	-0.565050845620731	23	33163789	33316917	0.186356639256811	1	0	0.186356639256811	1	0	153128	1	13	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	HSD3B1	1	119507198	119515054	FALSE	43	-0.890933866500247	13	117628427	119906570	0.365165917639896	1	0	0.365165917639896	1	0	2278143	1	13	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	HSD3B2	1	119414931	119423035	FALSE	43	-0.890933866500247	13	117628427	119906570	0.365165917639896	1	0	0.365165917639896	1	0	2278143	1	13	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	HSD3B7	16	30985207	30989152	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	HSDL1	16	84122146	84145192	FALSE	987	-0.578642888038652	23	81999201	85806436	0.186356639256811	1	0	0.186356639256811	1	0	3807235	1	31	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	HSDL2	9	112379937	112472410	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	HSF1	8	144291591	144314722	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	HSF2	6	122399546	122433119	FALSE	421	-0.534093125771784	29	117482879	126348569	NA	2	NA	NA	2	NA	8865690	NA	29	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HSF2BP	21	43529192	43659493	FALSE	1234	-0.544212636077936	27	41740855	44141314	1	2	1	1	2	1	2400459	1	31	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	HSF4	16	67164681	67169945	FALSE	976	-0.467350965811123	34	67110264	67538977	NA	2	NA	NA	2	NA	428713	NA	24	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HSF5	17	58420167	58488384	FALSE	1058	-0.423419268198233	34	58422367	59890994	NA	2	NA	NA	2	NA	1468627	NA	20	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HSFX1	23	149774068	149776867	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	2	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	HSFX2	23	149592515	149594716	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	2	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	HSFX3	23	149548210	149549932	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	4	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	HSFX4	23	149929645	149931287	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	3	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	HSH2D	19	16134028	16158575	FALSE	1152	-0.702482358931041	22	15914366	16234459	0.291335969972972	1	0	0.291335969972972	1	0	320093	1	8	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	HSP90AA1	14	102080738	102139699	FALSE	877	1.40556460780986	88	102080983	102139979	0.364342740527346	16	NA	0.364342740527346	16	NA	58996	NA	2	23	0	FALSE	AMP	PASS
659_bTo_pair	HSP90AB1	6	44246166	44253888	FALSE	403	-0.460377194073257	34	44113878	44253574	NA	2	NA	NA	2	NA	139696	NA	6	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HSP90B1	12	103930107	103953645	FALSE	798	-0.492720037723834	34	102839233	105367537	NA	2	NA	NA	2	NA	2528304	NA	20	22	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HSPA12A	10	116671192	116850236	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	17	0	FALSE	CNLOH	PASS
659_bTo_pair	HSPA12B	20	3732667	3753111	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	HSPA13	21	14371115	14383484	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	HSPA14	10	14838160	14871741	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	15	0	FALSE	CNLOH	PASS
659_bTo_pair	HSPA1A	6	31815464	31817946	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	HSPA1B	6	31827735	31830255	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	HSPA1L	6	31809619	31815065	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	8	2	FALSE	HETLOSS	PASS
659_bTo_pair	HSPA2	14	64535905	64546173	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	HSPA4	5	133051962	133106449	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	HSPA4L	4	127781821	127840733	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	22	2	FALSE	DIPLOID	PASS
659_bTo_pair	HSPA5	9	125234853	125241330	FALSE	619	-0.820686000870706	14	125203036	127778681	0.365165917639896	1	0	0.365165917639896	1	0	2575645	1	23	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	HSPA6	1	161524540	161526910	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	HSPA8	11	123057489	123063230	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	HSPA9	5	138553756	138575724	FALSE	336	-0.752536733071469	19	135941639	138575278	0.365165917639896	1	0	0.365165917639896	1	0	2633639	1	24	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	HSPB1	7	76302544	76304295	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	HSPB11	1	53916574	53945929	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	HSPB2	11	111912242	111914093	FALSE	723	-0.542672588801529	29	108383083	111912852	NA	2	NA	NA	2	NA	3529769	NA	24	3	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	HSPB2-C11orf52	11	111912736	111926871	FALSE	723	-0.542672588801529	29	108383083	111912852	NA	2	NA	NA	2	NA	3529769	NA	24	7	1	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	HSPB3	5	54455601	54456384	FALSE	319	-0.764156631411702	19	50399919	56556187	0.365165917639896	1	0	0.365165917639896	1	0	6156268	1	28	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	HSPB6	19	35754569	35758079	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	HSPB7	1	16014028	16019594	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	HSPB8	12	119178642	119221131	FALSE	808	-0.531025796359709	27	115966146	120090026	1	2	1	1	2	1	4123880	1	23	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	HSPB9	17	42121431	42123352	FALSE	1036	-0.764029118419186	19	41624551	42193564	0.365165917639896	1	0	0.365165917639896	1	0	569013	1	25	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	HSPBAP1	3	122740003	122793824	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	9	0	FALSE	GAIN	PASS
659_bTo_pair	HSPBP1	19	55262231	55280381	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	10	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	HSPD1	2	197486581	197516737	FALSE	163	-0.632896131155704	26	197453631	198083720	NA	2	NA	NA	2	NA	630089	NA	9	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HSPE1	2	197499994	197503457	FALSE	163	-0.632896131155704	26	197453631	198083720	NA	2	NA	NA	2	NA	630089	NA	9	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HSPE1-MOB4	2	197500413	197550726	FALSE	163	-0.632896131155704	26	197453631	198083720	NA	2	NA	NA	2	NA	630089	NA	9	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HSPG2	1	21822245	21937297	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	107	4	FALSE	DIPLOID	PASS
659_bTo_pair	HSPH1	13	31134974	31162388	FALSE	828	-0.893717680890687	13	28659152	32311865	0.365165917639896	1	0	0.365165917639896	1	0	3652713	1	17	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	HTATIP2	11	20363685	20383783	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	HTATSF1	23	136497079	136512346	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	13	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	HTD2	3	58306262	58318574	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	HTN1	4	70050402	70058845	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	HTN3	4	70028413	70036538	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	HTR1A	5	63960356	63962507	FALSE	323	-0.645106866010582	25	58495036	67196614	0.365165917639896	1	0	0.365165917639896	1	0	8701578	1	31	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	HTR1B	6	77461753	77463773	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	HTR1D	1	23191895	23194729	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	HTR1E	6	86937306	87016683	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	HTR1F	3	87990696	87993835	FALSE	232	-0.785224171872638	14	72888305	88156485	0.365165917639896	1	0	0.365165917639896	1	0	15268180	1	18	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	HTR2A	13	46831550	46897076	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	HTR2B	2	231108230	231125118	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	HTR2C	23	114584078	114910061	FALSE	1326	0.081501992784242	59	111246621	119452040	0.308533751035793	5	NA	0.308533751035793	5	NA	8205419	NA	28	8	0	FALSE	AMP (many states)	PASS
659_bTo_pair	HTR3A	11	113974881	113990313	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	12	2	FALSE	HETLOSS	PASS
659_bTo_pair	HTR3B	11	113904677	113946565	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	HTR3C	3	184053047	184060671	FALSE	259	-0.260370931250901	44	183654025	185254015	0.345317016959666	3	1	0.345317016959666	3	1	1599990	2	31	10	2	FALSE	GAIN	PASS
659_bTo_pair	HTR3D	3	184031544	184039369	FALSE	259	-0.260370931250901	44	183654025	185254015	0.345317016959666	3	1	0.345317016959666	3	1	1599990	2	31	10	0	FALSE	GAIN	PASS
659_bTo_pair	HTR3E	3	184097064	184106995	FALSE	259	-0.260370931250901	44	183654025	185254015	0.345317016959666	3	1	0.345317016959666	3	1	1599990	2	31	11	0	FALSE	GAIN	PASS
659_bTo_pair	HTR4	5	148451032	148677235	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	13	1	FALSE	HETLOSS	PASS
659_bTo_pair	HTR5A	7	155070324	155087392	FALSE	509	-0.56054035608462	23	152759958	159144708	0.186356639256811	1	0	0.186356639256811	1	0	6384750	1	20	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	HTR6	1	19665287	19679562	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	HTR7	10	90740823	90857698	FALSE	662	-0.410954559094016	36	89715119	94762760	0.365165917639896	2	0	0.365165917639896	2	0	5047641	2	33	7	0	FALSE	CNLOH	PASS
659_bTo_pair	HTRA1	10	122458551	122514908	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	10	1	FALSE	CNLOH	PASS
659_bTo_pair	HTRA2	2	74529377	74533348	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HTRA3	4	8269765	8307111	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	12	0	FALSE	GAIN	PASS
659_bTo_pair	HTRA4	8	38974164	38988662	FALSE	536	-0.812766686991614	14	38512585	41896345	0.365165917639896	1	0	0.365165917639896	1	0	3383760	1	19	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	HTT	4	3041422	3243960	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	68	0	FALSE	GAIN	PASS
659_bTo_pair	HUNK	21	31873315	32044633	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	14	2	FALSE	DIPLOID	PASS
659_bTo_pair	HUS1	7	47963288	47979553	FALSE	464	-0.323591849229323	42	45157835	48245556	0.189552622934988	3	0	0.189552622934988	3	0	3087721	3	12	8	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	HUS1B	6	655939	656963	FALSE	366	-0.56930463675583	26	486737	3019480	NA	2	NA	NA	2	NA	2532743	NA	12	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HUWE1	23	53532096	53686729	FALSE	1303	0.0232492223836125	56	53426353	57488811	0.365165917639896	4	NA	0.365165917639896	4	NA	4062458	NA	32	93	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	HVCN1	12	110627841	110704950	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	HYAL1	3	50299889	50312381	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	HYAL2	3	50317790	50322906	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	HYAL3	3	50292831	50299468	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	HYAL4	7	123828983	123877478	FALSE	490	-0.576498321273708	26	116888215	124790543	NA	2	NA	NA	2	NA	7902328	NA	33	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HYDIN	16	70807378	71230722	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	87	2	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	HYI	1	43451003	43453989	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	HYKK	15	78507564	78537372	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	HYLS1	11	125883614	125900648	FALSE	732	-0.497254377564454	34	125672754	127000522	NA	2	NA	NA	2	NA	1327768	NA	19	12	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	HYOU1	11	119044189	119057202	FALSE	728	-0.487905654975058	30	118527582	119195409	1	2	1	1	2	1	667827	1	26	25	2	FALSE	DIPLOID	PASS
659_bTo_pair	HYPK	15	43796142	43803043	FALSE	902	-0.672637691845835	22	43521582	44676538	0.291335969972972	1	0	0.291335969972972	1	0	1154956	1	21	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	HYPM	23	37990817	37991317	FALSE	1286	-0.229369008369366	46	37655739	38687617	0.298322295679939	3	NA	0.298322295679939	3	NA	1031878	NA	12	2	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	IAH1	2	9473658	9496543	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	IAPP	12	21354959	21379978	FALSE	755	-0.347739111320178	43	18683333	21462024	0.192136715055622	3	NA	0.192136715055622	3	NA	2778691	NA	14	2	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	IARS	9	92210207	92293756	FALSE	606	-0.547644280946133	27	91214370	95094057	1	2	1	1	2	1	3879687	1	31	33	0	FALSE	DIPLOID	PASS
659_bTo_pair	IARS2	1	220094102	220148041	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	23	0	FALSE	DIPLOID	PASS
659_bTo_pair	IBA57	1	228165815	228182257	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	IBSP	4	87799581	87812435	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	7	2	FALSE	DIPLOID	PASS
659_bTo_pair	IBTK	6	82169983	82247754	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	31	0	FALSE	DIPLOID	PASS
659_bTo_pair	ICA1	7	8113184	8262687	FALSE	456	-0.240618790532325	45	6028682	12688782	0.279823559258657	3	0	0.279823559258657	3	0	6660100	3	32	15	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	ICA1L	2	202773150	202871985	FALSE	166	-0.425780118113581	30	201288659	203854096	1	2	1	1	2	1	2565437	1	22	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	ICAM1	19	10270835	10286615	FALSE	1139	-0.718742930681428	18	10252235	10467338	0.180216333675297	0	0	0.180216333675297	0	0	215103	0	13	10	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ICAM2	17	64002594	64020634	FALSE	1066	-0.447707994366894	34	63941413	64859452	NA	2	NA	NA	2	NA	918039	NA	12	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ICAM3	19	10333776	10339823	FALSE	1139	-0.718742930681428	18	10252235	10467338	0.180216333675297	0	0	0.180216333675297	0	0	215103	0	13	11	4	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ICAM4	19	10286967	10288522	FALSE	1139	-0.718742930681428	18	10252235	10467338	0.180216333675297	0	0	0.180216333675297	0	0	215103	0	13	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ICAM5	19	10289981	10296778	FALSE	1139	-0.718742930681428	18	10252235	10467338	0.180216333675297	0	0	0.180216333675297	0	0	215103	0	13	17	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ICE1	5	5420664	5490234	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	39	1	FALSE	GAIN	PASS
659_bTo_pair	ICE2	15	60419609	60479160	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	ICK	6	53001279	53061802	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	ICMT	1	6221193	6235972	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	ICOS	2	203936748	203961577	FALSE	168	-0.499602545595775	30	203936898	208231285	1	2	1	1	2	1	4294387	1	25	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	ICOSLG	21	44217014	44240966	FALSE	1235	1.24520251694039	84	44224870	44229199	0.364342740527346	14	NA	0.364342740527346	14	NA	4329	NA	1	18	4	TRUE	AMP	PASS
659_bTo_pair	ID1	20	31605283	31606515	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	ID2	2	8678845	8684453	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	ID3	1	23557918	23559794	TRUE	9	0.0247469375259084	56	23553811	23757004	0.365165917639896	4	NA	0.365165917639896	4	NA	203193	NA	3	7	4	FALSE	GAIN (many states)	PASS
659_bTo_pair	ID4	6	19837386	19840684	FALSE	370	-0.377368469329801	39	15246548	20212233	NA	2	NA	NA	2	NA	4965685	NA	18	3	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IDE	10	92451684	92574076	FALSE	662	-0.410954559094016	36	89715119	94762760	0.365165917639896	2	0	0.365165917639896	2	0	5047641	2	33	27	0	FALSE	CNLOH	PASS
659_bTo_pair	IDH1	2	208236227	208266074	FALSE	169	1.22189769320275	84	208236467	208271150	0.364342740527346	14	NA	0.364342740527346	14	NA	34683	NA	2	21	0	FALSE	AMP	PASS
659_bTo_pair	IDH2	15	90083045	90102504	FALSE	926	1.09260586802157	81	90080176	90102284	0.364342740527346	13	NA	0.364342740527346	13	NA	22108	NA	2	20	3	FALSE	AMP	PASS
659_bTo_pair	IDH3A	15	78131498	78171949	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	IDH3B	20	2658395	2664219	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	IDH3G	23	153785766	153794523	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	13	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	IDI1	10	1039152	1049170	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	7	0	FALSE	CNLOH	PASS
659_bTo_pair	IDI2	10	1018907	1025859	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	5	0	FALSE	CNLOH	PASS
659_bTo_pair	IDNK	9	83623049	83644130	FALSE	598	-0.546497547865564	29	78236395	83956411	NA	2	NA	NA	2	NA	5720016	NA	14	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IDO1	8	39902275	39928444	FALSE	536	-0.812766686991614	14	38512585	41896345	0.365165917639896	1	0	0.365165917639896	1	0	3383760	1	19	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	IDO2	8	39934614	40016391	FALSE	536	-0.812766686991614	14	38512585	41896345	0.365165917639896	1	0	0.365165917639896	1	0	3383760	1	19	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	IDS	23	149476990	149521096	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	11	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	IDUA	4	986997	1004506	FALSE	272	-0.300029378244858	40	85877	1745020	0.308149309490068	3	1	0.308149309490068	3	1	1659143	2	29	24	2	FALSE	GAIN	PASS
659_bTo_pair	IER2	19	13150415	13154908	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	IER3	6	30743199	30744554	FALSE	379	-0.524744136561063	27	30546321	31270541	1	2	1	1	2	1	724220	1	30	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	IER3IP1	18	47152834	47176374	FALSE	1100	-0.758401070483502	19	45624783	47803983	0.365165917639896	1	0	0.365165917639896	1	0	2179200	1	22	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	IER5	1	181088712	181092899	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	IER5L	9	129175552	129178262	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	IFFO1	12	6538375	6556083	FALSE	741	-0.251609480735115	44	4489790	6567957	0.345317016959666	3	1	0.345317016959666	3	1	2078167	2	28	13	0	FALSE	GAIN	PASS
659_bTo_pair	IFFO2	1	18904281	18956686	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	IFI16	1	158999968	159055155	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	16	4	FALSE	DIPLOID	PASS
659_bTo_pair	IFI27	14	94104836	94116698	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	IFI27L1	14	94081282	94103846	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	IFI27L2	14	94127779	94130253	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	IFI30	19	18173162	18178117	FALSE	1158	2.03027191983043	104	18153185	18175698	0.364342740527346	27	NA	0.364342740527346	27	NA	22513	NA	3	9	1	TRUE	AMP	PASS
659_bTo_pair	IFI35	17	43006725	43014456	FALSE	1040	-0.646197503395479	26	42761348	43039396	NA	2	NA	NA	2	NA	278048	NA	18	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IFI44	1	78649796	78664078	FALSE	27	-0.365760579101575	39	77969065	85252731	NA	2	NA	NA	2	NA	7283666	NA	23	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IFI44L	1	78619922	78646145	FALSE	27	-0.365760579101575	39	77969065	85252731	NA	2	NA	NA	2	NA	7283666	NA	23	10	4	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IFI6	1	27666061	27672218	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	IFIH1	2	162267079	162318703	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	23	2	FALSE	DIPLOID	PASS
659_bTo_pair	IFIT1	10	89392546	89406486	FALSE	660	-0.0564321858974841	55	89034693	89433298	0.328696605851359	4	NA	0.328696605851359	4	NA	398605	NA	8	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	IFIT1B	10	89378056	89385205	FALSE	660	-0.0564321858974841	55	89034693	89433298	0.328696605851359	4	NA	0.328696605851359	4	NA	398605	NA	8	7	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	IFIT2	10	89283694	89309276	FALSE	660	-0.0564321858974841	55	89034693	89433298	0.328696605851359	4	NA	0.328696605851359	4	NA	398605	NA	8	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	IFIT3	10	89327894	89340971	FALSE	660	-0.0564321858974841	55	89034693	89433298	0.328696605851359	4	NA	0.328696605851359	4	NA	398605	NA	8	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	IFIT5	10	89414586	89421001	FALSE	660	-0.0564321858974841	55	89034693	89433298	0.328696605851359	4	NA	0.328696605851359	4	NA	398605	NA	8	7	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	IFITM1	11	313506	315272	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	3	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	IFITM10	11	1732410	1750591	FALSE	679	-0.702000712925199	21	1256247	1938477	0.140309795179477	0	0	0.140309795179477	0	0	682230	0	19	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	IFITM2	11	307631	315272	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	6	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	IFITM3	11	319669	327537	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	3	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	IFITM5	11	298200	299526	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	2	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	IFNA1	9	21440454	21441316	FALSE	583	-0.387007513258167	39	20715331	21839114	NA	2	NA	NA	2	NA	1123783	NA	21	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IFNA10	9	21206181	21207143	FALSE	583	-0.387007513258167	39	20715331	21839114	NA	2	NA	NA	2	NA	1123783	NA	21	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IFNA13	9	21367424	21368962	FALSE	583	-0.387007513258167	39	20715331	21839114	NA	2	NA	NA	2	NA	1123783	NA	21	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IFNA14	9	21239002	21239991	FALSE	583	-0.387007513258167	39	20715331	21839114	NA	2	NA	NA	2	NA	1123783	NA	21	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IFNA16	9	21216373	21217311	FALSE	583	-0.387007513258167	39	20715331	21839114	NA	2	NA	NA	2	NA	1123783	NA	21	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IFNA17	9	21227243	21228222	FALSE	583	-0.387007513258167	39	20715331	21839114	NA	2	NA	NA	2	NA	1123783	NA	21	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IFNA2	9	21384254	21385388	FALSE	583	-0.387007513258167	39	20715331	21839114	NA	2	NA	NA	2	NA	1123783	NA	21	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IFNA21	9	21165637	21166660	FALSE	583	-0.387007513258167	39	20715331	21839114	NA	2	NA	NA	2	NA	1123783	NA	21	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IFNA4	9	21186694	21187671	FALSE	583	-0.387007513258167	39	20715331	21839114	NA	2	NA	NA	2	NA	1123783	NA	21	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IFNA5	9	21304326	21305312	FALSE	583	-0.387007513258167	39	20715331	21839114	NA	2	NA	NA	2	NA	1123783	NA	21	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IFNA6	9	21349835	21351378	FALSE	583	-0.387007513258167	39	20715331	21839114	NA	2	NA	NA	2	NA	1123783	NA	21	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IFNA7	9	21201469	21202205	FALSE	583	-0.387007513258167	39	20715331	21839114	NA	2	NA	NA	2	NA	1123783	NA	21	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IFNA8	9	21409147	21410185	FALSE	583	-0.387007513258167	39	20715331	21839114	NA	2	NA	NA	2	NA	1123783	NA	21	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IFNAR1	21	33324477	33359862	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	IFNAR2	21	33229901	33265675	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	IFNB1	9	21077105	21077963	FALSE	583	-0.387007513258167	39	20715331	21839114	NA	2	NA	NA	2	NA	1123783	NA	21	2	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IFNE	9	21480839	21482313	FALSE	583	-0.387007513258167	39	20715331	21839114	NA	2	NA	NA	2	NA	1123783	NA	21	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IFNG	12	68154768	68159747	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	IFNGR1	6	137197484	137219449	TRUE	428	1.44085434531653	88	137194850	137884668	0.364342740527346	17	NA	0.364342740527346	17	NA	689818	NA	3	23	4	FALSE	AMP	PASS
659_bTo_pair	IFNGR2	21	33402896	33479348	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	IFNK	9	27524314	27526498	FALSE	585	-0.464842894155678	32	22447079	32572950	0.365165917639896	2	0	0.365165917639896	2	0	10125871	2	19	3	0	FALSE	CNLOH	PASS
659_bTo_pair	IFNL1	19	39296325	39298673	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	5	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	IFNL2	19	39268514	39270092	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	IFNL3	19	39243553	39245129	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	6	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	IFNLR1	1	24154157	24187959	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	IFNW1	9	21140214	21142145	FALSE	583	-0.387007513258167	39	20715331	21839114	NA	2	NA	NA	2	NA	1123783	NA	21	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IFRD1	7	112422968	112481017	FALSE	488	-0.464127371400283	34	107070260	116559206	NA	2	NA	NA	2	NA	9488946	NA	33	12	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IFRD2	3	50287732	50292918	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	IFT122	3	129440036	129520507	FALSE	240	-0.311262736248051	40	128620554	130098189	0.308149309490068	3	1	0.308149309490068	3	1	1477635	2	22	31	0	FALSE	GAIN	PASS
659_bTo_pair	IFT140	16	1510427	1612110	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	36	8	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	IFT172	2	27444371	27489789	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	49	0	FALSE	DIPLOID	PASS
659_bTo_pair	IFT20	17	28328325	28335489	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	IFT22	7	101313367	101321823	FALSE	484	-0.570670723449775	26	101042591	102111653	NA	2	NA	NA	2	NA	1069062	NA	15	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IFT27	22	36758202	36776256	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	7	0	FALSE	CNLOH	PASS
659_bTo_pair	IFT43	14	75902136	76084585	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	20	1	FALSE	DIPLOID	PASS
659_bTo_pair	IFT46	11	118544528	118572970	FALSE	728	-0.487905654975058	30	118527582	119195409	1	2	1	1	2	1	667827	1	26	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	IFT52	20	43590931	43647296	FALSE	1210	-0.476296426145969	34	43513997	45110019	NA	2	NA	NA	2	NA	1596022	NA	26	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IFT57	3	108160812	108222570	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	12	1	FALSE	GAIN	PASS
659_bTo_pair	IFT74	9	26947039	27062930	FALSE	585	-0.464842894155678	32	22447079	32572950	0.365165917639896	2	0	0.365165917639896	2	0	10125871	2	19	28	6	FALSE	CNLOH	PASS
659_bTo_pair	IFT80	3	160256986	160399880	FALSE	250	-0.231905273142314	46	156829339	161250770	0.298322295679939	3	NA	0.298322295679939	3	NA	4421431	NA	26	19	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	IFT81	12	110124335	110218797	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	IFT88	13	20567069	20691437	FALSE	819	-0.883807164728579	13	19173884	20902691	0.365165917639896	1	0	0.365165917639896	1	0	1728807	1	14	27	0	FALSE	HETLOSS	PASS
659_bTo_pair	IGBP1	23	70133449	70166324	FALSE	1311	0.0481524733197309	56	68048478	70452009	0.365165917639896	4	NA	0.365165917639896	4	NA	2403531	NA	19	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	IGDCC3	15	65327127	65378040	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	IGDCC4	15	65381464	65423072	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	26	1	FALSE	HETLOSS	PASS
659_bTo_pair	IGF1	12	102395874	102481744	FALSE	797	2.14770277280171	107	102396074	102481737	0.364342740527346	30	NA	0.364342740527346	30	NA	85663	NA	1	34	1	FALSE	AMP	PASS
659_bTo_pair	IGF1R	15	98648539	98964530	FALSE	932	1.54042056787293	91	98648758	98968564	0.364342740527346	18	NA	0.364342740527346	18	NA	319806	NA	2	59	10	FALSE	AMP	PASS
659_bTo_pair	IGF2	11	2129112	2158658	FALSE	680	1.48794523048071	90	1956426	2149537	0.364342740527346	18	NA	0.364342740527346	18	NA	193111	NA	3	30	0	FALSE	AMP	PASS
659_bTo_pair	IGF2BP1	17	48997412	49055650	FALSE	1051	-0.636429062465303	26	48785033	49576193	NA	2	NA	NA	2	NA	791160	NA	15	16	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IGF2BP2	3	185643739	185825056	FALSE	261	-0.625921534938974	26	185491707	185937908	NA	2	NA	NA	2	NA	446201	NA	5	18	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IGF2BP3	7	23310209	23470467	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	16	0	FALSE	GAIN	PASS
659_bTo_pair	IGF2R	6	159969099	160113507	FALSE	444	-0.505238631103688	30	158776425	160753038	1	2	1	1	2	1	1976613	1	17	52	5	FALSE	DIPLOID	PASS
659_bTo_pair	IGFALS	16	1790413	1794971	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	9	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	IGFBP1	7	45888357	45893668	FALSE	464	-0.323591849229323	42	45157835	48245556	0.189552622934988	3	0	0.189552622934988	3	0	3087721	3	12	5	1	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	IGFBP2	2	216632828	216664436	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	IGFBP3	7	45912245	45921874	FALSE	464	-0.323591849229323	42	45157835	48245556	0.189552622934988	3	0	0.189552622934988	3	0	3087721	3	12	5	1	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	IGFBP4	17	40443461	40457731	FALSE	1032	0.021285439110795	56	40363122	40620051	0.365165917639896	4	NA	0.365165917639896	4	NA	256929	NA	5	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	IGFBP5	2	216672105	216695525	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	IGFBP6	12	53097436	53102345	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	IGFBP7	4	57030773	57110385	FALSE	285	-0.676685623676823	22	55346376	64409389	0.291335969972972	1	0	0.291335969972972	1	0	9063013	1	23	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	IGFBPL1	9	38408994	38424447	FALSE	595	-0.209027397852981	47	37442028	67884575	0.365165917639896	3	1	0.365165917639896	3	1	30442547	2	35	5	0	FALSE	GAIN	PASS
659_bTo_pair	IGFL1	19	46229752	46231243	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	IGFL2	19	46143106	46161299	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	5	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	IGFL3	19	46120071	46124674	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	IGFL4	19	46039748	46077118	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	IGFLR1	19	35738801	35742453	FALSE	1168	1.42277899639017	88	35715274	35739868	0.364342740527346	17	NA	0.364342740527346	17	NA	24594	NA	4	8	0	TRUE	AMP	PASS
659_bTo_pair	IGFN1	1	201190825	201228952	FALSE	60	-0.443336911293225	30	196228264	201209660	1	2	1	1	2	1	4981396	1	29	57	8	TRUE	DIPLOID	PASS
659_bTo_pair	IGHMBP2	11	68903842	68940602	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	18	1	FALSE	GAIN	PASS
659_bTo_pair	IGIP	5	140125935	140129392	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	1	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	IGLL1	22	23573125	23580308	FALSE	1252	-0.948790128902656	11	23317677	23779437	0.289956079954009	0	0	0.289956079954009	0	0	461760	0	9	5	0	FALSE	HOMDEL	PASS
659_bTo_pair	IGLL5	22	22887780	22896107	FALSE	1249	1.90533284337075	101	22646756	22895581	0.364342740527346	25	NA	0.364342740527346	25	NA	248825	NA	2	7	1	TRUE	AMP	PASS
659_bTo_pair	IGLON5	19	51311848	51330354	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	IGSF1	23	131273506	131578899	FALSE	1335	0.100243493544559	59	130066940	134244999	0.308533751035793	5	NA	0.308533751035793	5	NA	4178059	NA	21	32	3	FALSE	AMP (many states)	PASS
659_bTo_pair	IGSF10	3	151425384	151458709	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	36	3	FALSE	GAIN	PASS
659_bTo_pair	IGSF11	3	118900557	119146068	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	11	2	FALSE	GAIN	PASS
659_bTo_pair	IGSF21	1	18107746	18378483	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	IGSF22	11	18704305	18726230	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	29	1	FALSE	DIPLOID	PASS
659_bTo_pair	IGSF23	19	44613630	44636781	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	IGSF3	1	116574399	116667755	FALSE	39	-0.830052301686955	16	116577512	117118673	0.365165917639896	1	0	0.365165917639896	1	0	541161	1	6	21	2	FALSE	HETLOSS	PASS
659_bTo_pair	IGSF5	21	39745407	39802096	FALSE	1230	-0.572411047461507	26	38805300	41452836	NA	2	NA	NA	2	NA	2647536	NA	17	11	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IGSF6	16	21639537	21652660	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	IGSF8	1	160091340	160098943	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	IGSF9	1	159927039	159945604	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	25	0	FALSE	DIPLOID	PASS
659_bTo_pair	IGSF9B	11	133908564	133956985	FALSE	734	-0.516486951202814	27	128842412	134387591	1	2	1	1	2	1	5545179	1	27	29	0	FALSE	DIPLOID	PASS
659_bTo_pair	IHH	2	219054420	219060467	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	IK	5	140647058	140662479	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	21	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	IKBIP	12	98613405	98645113	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	11	2	FALSE	DIPLOID	PASS
659_bTo_pair	IKBKB	8	42271302	42332653	FALSE	540	1.40184604266568	88	42271381	42332464	0.364342740527346	16	NA	0.364342740527346	16	NA	61083	NA	1	30	1	FALSE	AMP	PASS
659_bTo_pair	IKBKE	1	206470476	206496889	FALSE	69	-0.48847123055109	34	205798087	206732058	NA	2	NA	NA	2	NA	933971	NA	14	25	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IKBKG	23	154541199	154565046	FALSE	1340	2.24617742489859	109	154517863	154547412	0.364342740527346	32	NA	0.364342740527346	32	NA	29549	NA	2	11	0	TRUE	AMP	PASS
659_bTo_pair	IKZF1	7	50304068	50405101	FALSE	466	1.86891862787669	100	50304209	50447173	0.364342740527346	24	NA	0.364342740527346	24	NA	142964	NA	2	38	12	FALSE	AMP	PASS
659_bTo_pair	IKZF2	2	212999691	213152427	FALSE	174	-0.596604116836576	26	213007521	214575779	NA	2	NA	NA	2	NA	1568258	NA	3	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IKZF3	17	39757715	39864188	TRUE	1029	1.70192232672658	96	39757931	39864111	0.364342740527346	21	NA	0.364342740527346	21	NA	106180	NA	1	36	0	FALSE	AMP	PASS
659_bTo_pair	IKZF4	12	56007659	56038435	FALSE	776	-0.798270269619795	16	55987117	56074534	0.365165917639896	1	0	0.365165917639896	1	0	87417	1	4	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	IKZF5	10	122990806	123008817	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	7	0	FALSE	CNLOH	PASS
659_bTo_pair	IL10	1	206767602	206772494	FALSE	70	1.60566795726045	93	206732702	206774507	0.364342740527346	19	NA	0.364342740527346	19	NA	41805	NA	2	8	0	FALSE	AMP	PASS
659_bTo_pair	IL10RA	11	117986348	118003037	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	IL10RB	21	33266358	33310187	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	IL11	19	55364389	55370463	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	IL11RA	9	34650702	34661892	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	12	0	FALSE	CNLOH	PASS
659_bTo_pair	IL12A	3	159988750	159996019	FALSE	250	-0.231905273142314	46	156829339	161250770	0.298322295679939	3	NA	0.298322295679939	3	NA	4421431	NA	26	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	IL12B	5	159314783	159330887	FALSE	353	-0.698571741790457	22	157138801	161546576	0.291335969972972	1	0	0.291335969972972	1	0	4407775	1	29	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	IL12RB1	19	18058995	18098944	FALSE	1157	-0.332253297419471	43	17859980	18149705	0.192136715055622	3	NA	0.192136715055622	3	NA	289725	NA	7	20	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	IL12RB2	1	67307364	67397090	FALSE	23	-0.326404897444941	43	65224778	71080923	0.192136715055622	3	NA	0.192136715055622	3	NA	5856145	NA	29	18	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	IL13	5	132656263	132661110	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	IL13RA1	23	118727572	118794539	FALSE	1326	0.081501992784242	59	111246621	119452040	0.308533751035793	5	NA	0.308533751035793	5	NA	8205419	NA	28	11	0	FALSE	AMP (many states)	PASS
659_bTo_pair	IL13RA2	23	115003975	115019977	FALSE	1326	0.081501992784242	59	111246621	119452040	0.308533751035793	5	NA	0.308533751035793	5	NA	8205419	NA	28	9	0	FALSE	AMP (many states)	PASS
659_bTo_pair	IL15	4	141636599	141733987	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	IL15RA	10	5943639	5978187	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	9	2	FALSE	CNLOH	PASS
659_bTo_pair	IL16	15	81159575	81314058	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	30	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	IL17A	6	52186375	52190638	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	IL17B	5	149371324	149404202	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	IL17C	16	88638591	88640473	FALSE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	IL17D	13	20702127	20723098	FALSE	819	-0.883807164728579	13	19173884	20902691	0.365165917639896	1	0	0.365165917639896	1	0	1728807	1	14	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	IL17F	6	52236681	52244537	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	IL17RA	22	17084954	17115694	FALSE	1240	-0.594689860601271	26	15528179	18606839	NA	2	NA	NA	2	NA	3078660	NA	21	18	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IL17RB	3	53846580	53865800	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	13	2	FALSE	HETLOSS	PASS
659_bTo_pair	IL17RC	3	9917074	9933630	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	IL17RD	3	57089982	57170306	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	IL17RE	3	9902612	9916402	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	IL17REL	22	49994513	50012659	FALSE	1271	-0.350898193716427	41	45922979	50285791	0.284729887459054	3	0	0.284729887459054	3	0	4362812	3	30	10	4	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	IL18	11	112143251	112164117	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	IL18BP	11	71998541	72005715	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	10	2	FALSE	GAIN	PASS
659_bTo_pair	IL18R1	2	102311529	102398775	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	23	3	FALSE	DIPLOID	PASS
659_bTo_pair	IL18RAP	2	102418689	102452565	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	IL19	1	206798870	206842981	FALSE	71	-0.474443448890496	34	206798940	207049323	NA	2	NA	NA	2	NA	250383	NA	9	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IL1A	2	112773915	112784590	FALSE	138	-0.423459519967032	34	112060069	113201423	NA	2	NA	NA	2	NA	1141354	NA	21	6	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IL1B	2	112829751	112836903	FALSE	138	-0.423459519967032	34	112060069	113201423	NA	2	NA	NA	2	NA	1141354	NA	21	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IL1F10	2	113067970	113075850	FALSE	138	-0.423459519967032	34	112060069	113201423	NA	2	NA	NA	2	NA	1141354	NA	21	4	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IL1R1	2	102064544	102179874	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	IL1R2	2	101991844	102028544	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	IL1RAP	3	190514051	190659750	FALSE	269	-0.263219948753545	44	189957970	195888442	0.345317016959666	3	1	0.345317016959666	3	1	5930472	2	31	15	0	FALSE	GAIN	PASS
659_bTo_pair	IL1RAPL1	23	28587399	29956723	FALSE	1282	-0.198839212217093	48	28789325	33339312	0.365165917639896	3	NA	0.365165917639896	3	NA	4549987	NA	11	13	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	IL1RAPL2	23	104566315	105767829	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	19	0	FALSE	AMP (many states)	PASS
659_bTo_pair	IL1RL1	2	102311502	102352037	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	IL1RL2	2	102186973	102240002	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	14	2	FALSE	DIPLOID	PASS
659_bTo_pair	IL1RN	2	113107214	113134016	FALSE	138	-0.423459519967032	34	112060069	113201423	NA	2	NA	NA	2	NA	1141354	NA	21	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IL2	4	122451470	122456725	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	IL20	1	206865354	206869223	FALSE	71	-0.474443448890496	34	206798940	207049323	NA	2	NA	NA	2	NA	250383	NA	9	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IL20RA	6	136999971	137045180	FALSE	427	-0.614116824618693	26	135285680	137161691	NA	2	NA	NA	2	NA	1876011	NA	10	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IL20RB	3	136946230	137011085	FALSE	244	-0.465451876797886	34	136855703	138629155	NA	2	NA	NA	2	NA	1773452	NA	14	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IL21	4	122610108	122621069	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	5	0	TRUE	DIPLOID	PASS
659_bTo_pair	IL21R	16	27402162	27452042	FALSE	962	-0.522336070959039	29	27403203	28925074	NA	2	NA	NA	2	NA	1521871	NA	25	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IL22	12	68248242	68253604	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	IL22RA1	1	24119771	24143121	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	IL22RA2	6	137143820	137173648	FALSE	427	-0.614116824618693	26	135285680	137161691	NA	2	NA	NA	2	NA	1876011	NA	10	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IL23A	12	56334174	56340410	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IL23R	1	67138907	67259979	FALSE	23	-0.326404897444941	43	65224778	71080923	0.192136715055622	3	NA	0.192136715055622	3	NA	5856145	NA	29	13	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	IL24	1	206897443	206904139	FALSE	71	-0.474443448890496	34	206798940	207049323	NA	2	NA	NA	2	NA	250383	NA	9	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IL25	14	23372809	23376403	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	IL26	12	68201351	68225821	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	IL27	16	28499362	28512051	FALSE	962	-0.522336070959039	29	27403203	28925074	NA	2	NA	NA	2	NA	1521871	NA	25	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IL27RA	19	14031748	14053216	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	15	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	IL2RA	10	6010689	6062370	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	8	1	FALSE	CNLOH	PASS
659_bTo_pair	IL2RB	22	37125838	37175054	FALSE	1263	-0.528184158498335	29	36991204	37967644	NA	2	NA	NA	2	NA	976440	NA	31	11	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IL2RG	23	71107404	71112108	FALSE	1313	0.277003378144951	63	70925855	71111565	0.364342740527346	6	NA	0.364342740527346	6	NA	185710	NA	6	8	0	FALSE	AMP (many states)	PASS
659_bTo_pair	IL3	5	132060529	132063204	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	IL31	12	122172030	122174199	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	IL31RA	5	55851379	55922853	FALSE	319	-0.764156631411702	19	50399919	56556187	0.365165917639896	1	0	0.365165917639896	1	0	6156268	1	28	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	IL32	16	3065297	3082192	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	IL33	9	6215786	6257983	FALSE	579	-0.757785700087963	19	5656721	7798588	0.365165917639896	1	0	0.365165917639896	1	0	2141867	1	11	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	IL34	16	70579895	70660682	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IL36A	2	113005461	113008044	FALSE	138	-0.423459519967032	34	112060069	113201423	NA	2	NA	NA	2	NA	1141354	NA	21	4	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IL36B	2	113022091	113052867	FALSE	138	-0.423459519967032	34	112060069	113201423	NA	2	NA	NA	2	NA	1141354	NA	21	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IL36G	2	112973203	112985665	FALSE	138	-0.423459519967032	34	112060069	113201423	NA	2	NA	NA	2	NA	1141354	NA	21	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IL36RN	2	113058638	113065382	FALSE	138	-0.423459519967032	34	112060069	113201423	NA	2	NA	NA	2	NA	1141354	NA	21	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IL37	2	112912971	112918882	FALSE	138	-0.423459519967032	34	112060069	113201423	NA	2	NA	NA	2	NA	1141354	NA	21	6	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IL4	5	132673986	132682676	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	IL4I1	19	49889654	49929539	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	18	1	FALSE	HETLOSS	PASS
659_bTo_pair	IL4R	16	27313668	27364778	FALSE	961	1.83569281946435	100	27235296	27364776	0.364342740527346	23	NA	0.364342740527346	23	NA	129480	NA	2	24	3	FALSE	AMP	PASS
659_bTo_pair	IL5	5	132541444	132556838	FALSE	334	0.895961408263885	76	132446676	132651365	0.364342740527346	11	NA	0.364342740527346	11	NA	204689	NA	4	7	0	FALSE	AMP	PASS
659_bTo_pair	IL5RA	3	3066326	3126613	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	IL6	7	22725884	22732002	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	5	0	FALSE	GAIN	PASS
659_bTo_pair	IL6R	1	154405193	154469450	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	IL6ST	5	55935095	55994993	FALSE	319	-0.764156631411702	19	50399919	56556187	0.365165917639896	1	0	0.365165917639896	1	0	6156268	1	28	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	IL7	8	78675743	78805523	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	14	1	FALSE	GAIN	PASS
659_bTo_pair	IL7R	5	35852695	35879603	FALSE	312	-0.206081392785099	47	24487677	35857105	0.365165917639896	3	1	0.365165917639896	3	1	11369428	2	27	22	7	TRUE	GAIN	PASS
659_bTo_pair	IL9	5	135892246	135895827	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	ILDR1	3	121987323	122022258	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	10	1	FALSE	GAIN	PASS
659_bTo_pair	ILDR2	1	166895711	166975482	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	ILF2	1	153661788	153671048	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	ILF3	19	10654261	10692417	FALSE	1141	-0.578703281933348	26	10514217	10929669	NA	2	NA	NA	2	NA	415452	NA	14	22	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ILK	11	6603708	6610874	FALSE	682	-0.308581000695747	43	6240079	6614875	0.192136715055622	3	NA	0.192136715055622	3	NA	374796	NA	15	11	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	ILKAP	2	238170401	238203729	FALSE	190	-0.691419458816616	21	236392006	238848635	0.140309795179477	0	0	0.140309795179477	0	0	2456629	0	22	12	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ILVBL	19	15114984	15125785	FALSE	1149	-0.413849407553013	38	14562540	15157819	0.164051638880412	2	0	0.164051638880412	2	0	595279	2	17	15	3	FALSE	CNLOH	PASS
659_bTo_pair	IMMP1L	11	31432401	31509645	FALSE	690	-0.499672577426227	34	26697185	32104345	NA	2	NA	NA	2	NA	5407160	NA	20	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IMMP2L	7	110663051	111562517	FALSE	488	-0.464127371400283	34	107070260	116559206	NA	2	NA	NA	2	NA	9488946	NA	33	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IMMT	2	86143932	86195770	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	17	3	FALSE	DIPLOID	PASS
659_bTo_pair	IMP3	15	75639085	75648706	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	IMP4	2	130342225	130347810	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	IMPA1	8	81657961	81686693	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	9	0	FALSE	GAIN	PASS
659_bTo_pair	IMPA2	18	11981025	12030883	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	8	0	FALSE	GAIN	PASS
659_bTo_pair	IMPACT	18	24426616	24453535	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	11	0	FALSE	GAIN	PASS
659_bTo_pair	IMPAD1	8	56957933	56993844	FALSE	548	-0.313898052002086	43	56168306	58659618	0.192136715055622	3	NA	0.192136715055622	3	NA	2491312	NA	10	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	IMPDH1	7	128392277	128410252	FALSE	492	-0.463656181520944	30	126439208	129166764	1	2	1	1	2	1	2727556	1	27	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	IMPDH2	3	49024325	49029408	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	IMPG1	6	75921115	76072678	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	21	2	FALSE	DIPLOID	PASS
659_bTo_pair	IMPG2	3	101222546	101320560	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	26	0	FALSE	GAIN	PASS
659_bTo_pair	INA	10	103277163	103290351	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	8	0	FALSE	CNLOH	PASS
659_bTo_pair	INAFM1	19	47274453	47275707	FALSE	1187	-0.64296711085636	26	47021158	48297657	NA	2	NA	NA	2	NA	1276499	NA	31	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	INAFM2	15	40323664	40326715	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	INAVA	1	200891048	200915735	FALSE	60	-0.443336911293225	30	196228264	201209660	1	2	1	1	2	1	4981396	1	29	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	INCA1	17	4988130	4997610	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	INCENP	11	62123973	62153163	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	22	2	FALSE	GAIN	PASS
659_bTo_pair	INF2	14	104689606	104722535	FALSE	883	-0.69016701050987	21	103712930	104759455	0.140309795179477	0	0	0.140309795179477	0	0	1046525	0	14	28	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ING1	13	110712736	110723339	FALSE	844	-0.576217954819194	24	110150427	113263496	0.359751661895656	2	0	0.359751661895656	2	0	3113069	2	19	8	0	FALSE	CNLOH	PASS
659_bTo_pair	ING2	4	183504994	183511096	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	ING3	7	120950749	120977216	FALSE	490	-0.576498321273708	26	116888215	124790543	NA	2	NA	NA	2	NA	7902328	NA	33	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ING4	12	6650280	6663148	FALSE	743	-0.145896859645485	51	6620180	6938488	0.365165917639896	3	NA	0.365165917639896	3	NA	318308	NA	20	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ING5	2	241687085	241729478	FALSE	194	-0.588828356865968	23	240025214	241817025	0.186356639256811	1	0	0.186356639256811	1	0	1791811	1	34	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	INHA	2	219569162	219575713	TRUE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	11	2	FALSE	HETLOSS	PASS
659_bTo_pair	INHBA	7	41667168	41705834	TRUE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	32	0	TRUE	GAIN	PASS
659_bTo_pair	INHBB	2	120346143	120351808	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	INHBC	12	57434760	57450828	FALSE	780	-0.355982590799428	43	57138514	57456829	0.192136715055622	3	NA	0.192136715055622	3	NA	318315	NA	9	6	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	INHBE	12	57452323	57459280	FALSE	780	-0.355982590799428	43	57138514	57456829	0.192136715055622	3	NA	0.192136715055622	3	NA	318315	NA	9	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	INIP	9	112683926	112718236	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	INKA1	3	49803254	49805030	FALSE	220	-0.761977046834943	19	49697158	49862323	0.365165917639896	1	0	0.365165917639896	1	0	165165	1	9	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	INKA2	1	111680630	111739424	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	INMT	7	30697985	30757602	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	6	2	FALSE	GAIN	PASS
659_bTo_pair	INMT-MINDY4	7	30752137	30892081	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	26	2	FALSE	GAIN	PASS
659_bTo_pair	INO80	15	40978880	41116354	FALSE	893	0.581714654955383	69	40979012	41116175	0.364342740527346	8	NA	0.364342740527346	8	NA	137163	NA	1	42	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	INO80B	2	74455023	74457960	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	INO80B-WBP1	2	74455088	74460884	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	INO80C	18	35452230	35497991	FALSE	1095	-0.699288883997088	20	33734323	36718652	0.365165917639896	1	0	0.365165917639896	1	0	2984329	1	17	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	INO80D	2	205993721	206086303	FALSE	168	-0.499602545595775	30	203936898	208231285	1	2	1	1	2	1	4294387	1	25	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	INO80E	16	29995294	30005793	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	INPP1	2	190343470	190371665	FALSE	161	-0.46057869782823	30	190057617	197310624	1	2	1	1	2	1	7253007	1	23	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	INPP4A	2	98444854	98594390	FALSE	131	1.47102456886917	90	98396426	98594195	0.364342740527346	17	NA	0.364342740527346	17	NA	197769	NA	2	55	5	FALSE	AMP	PASS
659_bTo_pair	INPP4B	4	142023160	142847432	TRUE	298	2.1633305015901	107	142018267	142030226	0.364342740527346	30	NA	0.364342740527346	30	NA	11959	NA	1	72	6	TRUE	AMP	PASS
659_bTo_pair	INPP5A	10	132537820	132783480	FALSE	676	-0.612597388333807	25	132187132	133626712	0.365165917639896	1	0	0.365165917639896	1	0	1439580	1	27	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	INPP5B	1	37860697	37947057	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	24	0	FALSE	DIPLOID	PASS
659_bTo_pair	INPP5D	2	233059967	233207903	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	28	4	FALSE	DIPLOID	PASS
659_bTo_pair	INPP5E	9	136428619	136439823	FALSE	629	-0.955558414525678	9	134750808	136485014	0.291955377254426	0	0	0.291955377254426	0	0	1734206	0	30	13	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	INPP5F	10	119726042	119829278	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	25	5	FALSE	CNLOH	PASS
659_bTo_pair	INPP5J	22	31122731	31134696	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	18	2	FALSE	CNLOH	PASS
659_bTo_pair	INPP5K	17	1494571	1516888	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	INPPL1	11	72223701	72239105	TRUE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	30	0	FALSE	GAIN	PASS
659_bTo_pair	INS	11	2159779	2161341	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	INS-IGF2	11	2132538	2161209	FALSE	680	1.48794523048071	90	1956426	2149537	0.364342740527346	18	NA	0.364342740527346	18	NA	193111	NA	3	21	0	TRUE	AMP	PASS
659_bTo_pair	INSC	11	15112424	15247208	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	15	3	FALSE	DIPLOID	PASS
659_bTo_pair	INSIG1	7	155297776	155310235	FALSE	509	-0.56054035608462	23	152759958	159144708	0.186356639256811	1	0	0.186356639256811	1	0	6384750	1	20	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	INSIG2	2	118088452	118110997	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	INSL3	19	17816512	17821574	FALSE	1155	-0.249305971018279	46	17273895	17821522	0.298322295679939	3	NA	0.298322295679939	3	NA	547627	NA	25	3	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	INSL4	9	5231419	5235304	FALSE	577	-0.270687969755387	46	5163973	5467073	0.298322295679939	3	NA	0.298322295679939	3	NA	303100	NA	6	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	INSL5	1	66797741	66801256	FALSE	23	-0.326404897444941	43	65224778	71080923	0.192136715055622	3	NA	0.192136715055622	3	NA	5856145	NA	29	2	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	INSL6	9	5123880	5185668	FALSE	576	2.24224290692003	109	5112844	5129961	0.364342740527346	32	NA	0.364342740527346	32	NA	17117	NA	2	18	1	TRUE	AMP	PASS
659_bTo_pair	INSM1	20	20368121	20370949	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	INSM2	14	35534042	35537054	FALSE	853	2.36660806787545	111	35398117	35534470	0.364342740527346	35	NA	0.364342740527346	35	NA	136353	NA	2	7	0	TRUE	AMP	PASS
659_bTo_pair	INSR	19	7112255	7294034	FALSE	1129	1.61943913706132	93	7112323	7294391	0.364342740527346	20	NA	0.364342740527346	20	NA	182068	NA	1	47	0	FALSE	AMP	PASS
659_bTo_pair	INSRR	1	156840063	156859018	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	27	0	FALSE	DIPLOID	PASS
659_bTo_pair	INSYN1	15	73735431	73752747	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	INSYN2	10	127135426	127196158	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	7	1	FALSE	CNLOH	PASS
659_bTo_pair	INSYN2B	5	169864264	169980740	FALSE	356	-0.773912908266316	17	162095550	171298806	0.365165917639896	1	0	0.365165917639896	1	0	9203256	1	21	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	INTS1	7	1470277	1504367	FALSE	450	-0.329551508654045	40	193185	2379492	0.308149309490068	3	1	0.308149309490068	3	1	2186307	2	26	51	6	FALSE	GAIN	PASS
659_bTo_pair	INTS10	8	19817140	19852083	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	INTS11	1	1311585	1324691	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	19	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	INTS12	4	105682627	105895986	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	24	1	FALSE	DIPLOID	PASS
659_bTo_pair	INTS13	12	26905181	26938326	FALSE	759	-0.427669886187443	30	25503824	31088026	1	2	1	1	2	1	5584202	1	28	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	INTS14	15	65578753	65611289	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	INTS2	17	61865367	61928016	FALSE	1064	-0.419094292936043	39	61867575	63873599	NA	2	NA	NA	2	NA	2006024	NA	24	28	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	INTS3	1	153728067	153774808	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	30	0	FALSE	DIPLOID	PASS
659_bTo_pair	INTS4	11	77878720	77994678	FALSE	712	-0.188800010767045	48	77590086	86068715	0.365165917639896	3	NA	0.365165917639896	3	NA	8478629	NA	30	25	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	INTS5	11	62646848	62653302	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	13	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	INTS6	13	51354077	51454264	FALSE	836	-0.444239733377228	32	50956423	72747004	0.365165917639896	2	0	0.365165917639896	2	0	21790581	2	40	23	0	FALSE	CNLOH	PASS
659_bTo_pair	INTS6L	23	135520643	135582510	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	20	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	INTS7	1	211940399	212035542	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	INTS8	8	94813311	94881746	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	28	3	FALSE	GAIN	PASS
659_bTo_pair	INTS9	8	28767661	28890242	FALSE	523	-1.08188475411826	8	27469296	29263060	0.342391532111247	0	0	0.342391532111247	0	0	1793764	0	18	17	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	INTU	4	127623271	127726737	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	19	3	FALSE	DIPLOID	PASS
659_bTo_pair	INVS	9	100099256	100301000	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	IP6K1	3	49724294	49786542	FALSE	220	-0.761977046834943	19	49697158	49862323	0.365165917639896	1	0	0.365165917639896	1	0	165165	1	9	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	IP6K2	3	48688003	48740353	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	IP6K3	6	33721670	33746905	FALSE	391	-0.499783837646083	34	33391964	35241176	NA	2	NA	NA	2	NA	1849212	NA	26	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IPCEF1	6	154154496	154356792	FALSE	440	-0.500001062559341	30	152129628	156771069	1	2	1	1	2	1	4641441	1	14	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	IPMK	10	58191517	58267934	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	7	0	FALSE	CNLOH	PASS
659_bTo_pair	IPO11	5	62403972	62628582	FALSE	323	-0.645106866010582	25	58495036	67196614	0.365165917639896	1	0	0.365165917639896	1	0	8701578	1	31	37	2	FALSE	HETLOSS	PASS
659_bTo_pair	IPO13	1	43946939	43968022	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	IPO4	14	24180219	24188964	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	27	3	FALSE	DIPLOID	PASS
659_bTo_pair	IPO5	13	97953658	98024297	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	28	0	FALSE	CNLOH	PASS
659_bTo_pair	IPO7	11	9384622	9448126	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	26	0	FALSE	DIPLOID	PASS
659_bTo_pair	IPO8	12	30628988	30695986	FALSE	759	-0.427669886187443	30	25503824	31088026	1	2	1	1	2	1	5584202	1	28	27	1	FALSE	DIPLOID	PASS
659_bTo_pair	IPO9	1	201829141	201884294	FALSE	61	-0.50531963543648	34	201209721	201898337	NA	2	NA	NA	2	NA	688616	NA	11	25	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IPP	1	45694324	45750650	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	IPPK	9	92613184	92670265	FALSE	606	-0.547644280946133	27	91214370	95094057	1	2	1	1	2	1	3879687	1	31	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	IQCA1	2	236324147	236507542	FALSE	189	-0.580904316133535	23	233779383	236380649	0.186356639256811	1	0	0.186356639256811	1	0	2601266	1	10	21	1	TRUE	HETLOSS	PASS
659_bTo_pair	IQCA1L	7	151190873	151205496	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	20	3	FALSE	HETLOSS	PASS
659_bTo_pair	IQCB1	3	121769763	121835079	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	13	2	FALSE	GAIN	PASS
659_bTo_pair	IQCC	1	32205661	32208687	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	IQCD	12	113195441	113221094	FALSE	806	-0.481242901669781	30	113099979	114403736	1	2	1	1	2	1	1303757	1	13	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	IQCE	7	2558972	2614734	FALSE	451	-0.380727397700309	39	2432806	2844144	NA	2	NA	NA	2	NA	411338	NA	8	23	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IQCF1	3	51894876	51903335	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	IQCF2	3	51861629	51863424	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	IQCF3	3	51826883	51830856	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	IQCF5	3	51873721	51875584	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	IQCF6	3	51778561	51779241	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	IQCG	3	197889075	197960142	FALSE	271	-0.194588974812627	47	196198492	198169864	0.365165917639896	3	1	0.365165917639896	3	1	1971372	2	29	14	1	FALSE	GAIN	PASS
659_bTo_pair	IQCH	15	67254800	67502260	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	28	2	FALSE	HETLOSS	PASS
659_bTo_pair	IQCJ	3	158962928	159266307	FALSE	250	-0.231905273142314	46	156829339	161250770	0.298322295679939	3	NA	0.298322295679939	3	NA	4421431	NA	26	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	IQCJ-SCHIP1	3	158962235	159897366	FALSE	250	-0.231905273142314	46	156829339	161250770	0.298322295679939	3	NA	0.298322295679939	3	NA	4421431	NA	26	16	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	IQCK	16	19716456	19858467	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	IQCM	4	149351903	149896233	FALSE	300	-0.423460920061428	34	143186078	151174790	NA	2	NA	NA	2	NA	7988712	NA	32	14	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IQCN	19	18257097	18274509	FALSE	1159	-0.165917001507678	49	18177228	19138502	0.365165917639896	3	1	0.365165917639896	3	1	961274	2	36	18	0	FALSE	GAIN	PASS
659_bTo_pair	IQGAP1	15	90388218	90502243	FALSE	927	-0.86531749998723	13	90191956	90642068	0.365165917639896	1	0	0.365165917639896	1	0	450112	1	11	37	0	FALSE	HETLOSS	PASS
659_bTo_pair	IQGAP2	5	76403249	76708132	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	44	2	FALSE	HETLOSS	PASS
659_bTo_pair	IQGAP3	1	156525405	156572604	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	40	5	FALSE	DIPLOID	PASS
659_bTo_pair	IQSEC1	3	12897220	13283281	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	23	0	FALSE	HETLOSS	PASS
659_bTo_pair	IQSEC2	23	53225828	53321350	FALSE	1301	-0.0594408459899318	55	53226211	53373363	0.328696605851359	4	NA	0.328696605851359	4	NA	147152	NA	1	29	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	IQSEC3	12	66765	178460	FALSE	735	-0.363502334794913	39	66864	260044	NA	2	NA	NA	2	NA	193180	NA	3	22	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IQUB	7	123452400	123535077	FALSE	490	-0.576498321273708	26	116888215	124790543	NA	2	NA	NA	2	NA	7902328	NA	33	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IRAK1	23	154010500	154019980	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	15	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	IRAK1BP1	6	78867472	78946440	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	IRAK2	3	10164865	10243743	FALSE	198	0.122401387291047	59	10021483	10178045	0.308533751035793	5	NA	0.308533751035793	5	NA	156562	NA	5	14	3	TRUE	AMP (many states)	PASS
659_bTo_pair	IRAK3	12	66188879	66254622	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	IRAK4	12	43758944	43789543	FALSE	764	-0.478463991093384	34	40959192	45805435	NA	2	NA	NA	2	NA	4846243	NA	16	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IREB2	15	78437431	78501456	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	22	1	FALSE	HETLOSS	PASS
659_bTo_pair	IRF1	5	132481609	132490798	TRUE	334	0.895961408263885	76	132446676	132651365	0.364342740527346	11	NA	0.364342740527346	11	NA	204689	NA	4	17	0	FALSE	AMP	PASS
659_bTo_pair	IRF2	4	184387713	184474580	FALSE	304	1.74420126268939	98	184385859	184474533	0.364342740527346	22	NA	0.364342740527346	22	NA	88674	NA	1	22	1	FALSE	AMP	PASS
659_bTo_pair	IRF2BP1	19	45883607	45886170	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	IRF2BP2	1	234604269	234609525	FALSE	80	2.3766000593938	111	234478599	234609469	0.364342740527346	36	NA	0.364342740527346	36	NA	130870	NA	2	7	0	FALSE	AMP	PASS
659_bTo_pair	IRF2BPL	14	77024543	77028699	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	10	2	FALSE	DIPLOID	PASS
659_bTo_pair	IRF3	19	49659569	49665875	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	IRF4	6	391739	411447	FALSE	364	0.41941396164094	66	292515	401444	0.364342740527346	7	NA	0.364342740527346	7	NA	108929	NA	2	26	1	TRUE	INDETERMINATE	PASS
659_bTo_pair	IRF5	7	128937612	128950035	FALSE	492	-0.463656181520944	30	126439208	129166764	1	2	1	1	2	1	2727556	1	27	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	IRF6	1	209785623	209806175	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	IRF7	11	612553	615999	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	10	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	IRF8	16	85898803	85922609	TRUE	988	1.64665884287309	96	85806868	86510965	0.364342740527346	20	NA	0.364342740527346	20	NA	704097	NA	3	21	0	FALSE	AMP	PASS
659_bTo_pair	IRF9	14	24161053	24166565	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	IRGC	19	43716010	43720021	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	IRGM	5	150846523	150900736	FALSE	350	-0.819899512516675	16	150444373	153997804	0.365165917639896	1	0	0.365165917639896	1	0	3553431	1	25	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	IRGQ	19	43584369	43596135	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	IRS1	2	226731317	226799759	FALSE	185	1.82189603906799	100	226731574	226865039	0.364342740527346	23	NA	0.364342740527346	23	NA	133465	NA	2	36	1	FALSE	AMP	PASS
659_bTo_pair	IRS2	13	109752698	109786568	FALSE	843	2.23825904369743	109	109752846	109786227	0.364342740527346	32	NA	0.364342740527346	32	NA	33381	NA	1	29	4	FALSE	AMP	PASS
659_bTo_pair	IRS4	23	108732482	108736409	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	15	0	FALSE	AMP (many states)	PASS
659_bTo_pair	IRX1	5	3596054	3601403	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	9	0	FALSE	GAIN	PASS
659_bTo_pair	IRX2	5	2745845	2751662	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	7	0	FALSE	GAIN	PASS
659_bTo_pair	IRX3	16	54283304	54286763	FALSE	968	-0.505434692233225	30	51151209	56683230	1	2	1	1	2	1	5532021	1	34	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	IRX4	5	1877413	1887236	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	11	0	FALSE	GAIN	PASS
659_bTo_pair	IRX5	16	54930862	54934485	FALSE	968	-0.505434692233225	30	51151209	56683230	1	2	1	1	2	1	5532021	1	34	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	IRX6	16	55323760	55330760	FALSE	968	-0.505434692233225	30	51151209	56683230	1	2	1	1	2	1	5532021	1	34	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	ISCA1	9	86264546	86283102	FALSE	604	-0.547885090101936	27	85547201	90613824	1	2	1	1	2	1	5066623	1	21	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	ISCA2	14	74493720	74497106	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	ISCU	12	108562582	108569384	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	ISG15	1	1001138	1014540	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ISG20	15	88636153	88656483	FALSE	923	-0.958549275925123	11	88459674	89218937	0.289956079954009	0	0	0.289956079954009	0	0	759263	0	11	5	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ISG20L2	1	156721891	156728799	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ISL1	5	51383391	51394738	FALSE	319	-0.764156631411702	19	50399919	56556187	0.365165917639896	1	0	0.365165917639896	1	0	6156268	1	28	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	ISL2	15	76336724	76342476	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	ISLR	15	74173671	74176872	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	ISLR2	15	74100311	74138540	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	ISM1	20	13221771	13300651	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	ISM2	14	77474394	77498850	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	ISOC1	5	129094751	129114028	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	ISOC2	19	55452985	55462343	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ISPD	7	16087527	16421322	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	12	2	FALSE	GAIN	PASS
659_bTo_pair	IST1	16	71845996	71931199	FALSE	983	-0.428709389755029	30	71178941	72171154	1	2	1	1	2	1	992213	1	22	28	2	FALSE	DIPLOID	PASS
659_bTo_pair	ISX	22	35066136	35087387	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	6	2	FALSE	CNLOH	PASS
659_bTo_pair	ISY1	3	129127415	129161293	FALSE	240	-0.311262736248051	40	128620554	130098189	0.308149309490068	3	1	0.308149309490068	3	1	1477635	2	22	11	0	FALSE	GAIN	PASS
659_bTo_pair	ISY1-RAB43	3	129087575	129161036	FALSE	240	-0.311262736248051	40	128620554	130098189	0.308149309490068	3	1	0.308149309490068	3	1	1477635	2	22	15	0	FALSE	GAIN	PASS
659_bTo_pair	ISYNA1	19	18434388	18438301	FALSE	1159	-0.165917001507678	49	18177228	19138502	0.365165917639896	3	1	0.365165917639896	3	1	961274	2	36	10	0	FALSE	GAIN	PASS
659_bTo_pair	ITCH	20	34363235	34511393	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	23	0	FALSE	DIPLOID	PASS
659_bTo_pair	ITFG1	16	47154387	47464149	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	ITFG2	12	2812622	2859791	FALSE	739	-0.369471841682825	39	1104785	3873202	NA	2	NA	NA	2	NA	2768417	NA	20	24	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ITGA1	5	52787896	52959210	FALSE	319	-0.764156631411702	19	50399919	56556187	0.365165917639896	1	0	0.365165917639896	1	0	6156268	1	28	36	0	FALSE	HETLOSS	PASS
659_bTo_pair	ITGA10	1	145891208	145910189	FALSE	44	-0.0508975396039555	55	119911615	146019534	0.328696605851359	4	NA	0.328696605851359	4	NA	26107919	NA	33	30	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	ITGA11	15	68296533	68432162	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	32	1	FALSE	HETLOSS	PASS
659_bTo_pair	ITGA2	5	52989326	53094779	FALSE	319	-0.764156631411702	19	50399919	56556187	0.365165917639896	1	0	0.365165917639896	1	0	6156268	1	28	30	4	FALSE	HETLOSS	PASS
659_bTo_pair	ITGA2B	17	44372180	44389505	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	28	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ITGA3	17	50055968	50090481	FALSE	1053	-0.561829441831031	26	49646906	50626743	NA	2	NA	NA	2	NA	979837	NA	25	27	5	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ITGA4	2	181457202	181536187	FALSE	156	1.33033501129802	87	181457339	181539175	0.364342740527346	15	NA	0.364342740527346	15	NA	81836	NA	2	34	5	FALSE	AMP	PASS
659_bTo_pair	ITGA5	12	54395261	54419460	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	30	0	FALSE	DIPLOID	PASS
659_bTo_pair	ITGA6	2	172427354	172506282	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	26	3	FALSE	DIPLOID	PASS
659_bTo_pair	ITGA7	12	55684568	55716043	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	32	0	FALSE	DIPLOID	PASS
659_bTo_pair	ITGA8	10	15513949	15720125	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	31	1	FALSE	CNLOH	PASS
659_bTo_pair	ITGA9	3	37452115	37823514	FALSE	210	-0.747326004597467	19	37329112	38136668	0.365165917639896	1	0	0.365165917639896	1	0	807556	1	7	29	3	FALSE	HETLOSS	PASS
659_bTo_pair	ITGAD	16	31393312	31426505	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	31	1	FALSE	DIPLOID	PASS
659_bTo_pair	ITGAE	17	3714628	3801243	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	41	1	FALSE	HETLOSS	PASS
659_bTo_pair	ITGAL	16	30472658	30523185	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	32	1	FALSE	DIPLOID	PASS
659_bTo_pair	ITGAM	16	31259967	31332892	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	30	1	FALSE	DIPLOID	PASS
659_bTo_pair	ITGAV	2	186590065	186680901	FALSE	159	-0.50094907723407	34	185815441	189771912	NA	2	NA	NA	2	NA	3956471	NA	17	31	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ITGAX	16	31355134	31382997	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	29	1	FALSE	DIPLOID	PASS
659_bTo_pair	ITGB1	10	32900319	33005792	FALSE	640	-0.421497241268382	32	32269100	43094667	0.365165917639896	2	0	0.365165917639896	2	0	10825567	2	20	19	2	FALSE	CNLOH	PASS
659_bTo_pair	ITGB1BP1	2	9403475	9423547	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ITGB1BP2	23	71301734	71305371	FALSE	1315	-0.668712085705979	22	71290748	71304987	0.291335969972972	1	0	0.291335969972972	1	0	14239	1	2	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	ITGB2	21	44885953	44931989	FALSE	1238	1.30994363670836	86	44886449	44943814	0.364342740527346	15	NA	0.364342740527346	15	NA	57365	NA	2	16	1	FALSE	AMP	PASS
659_bTo_pair	ITGB3	17	47253846	47311816	FALSE	1046	-0.746772159255206	19	45395806	47696360	0.365165917639896	1	0	0.365165917639896	1	0	2300554	1	26	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	ITGB3BP	1	63440770	63593721	FALSE	21	-0.414935064922519	39	59321678	64830856	NA	2	NA	NA	2	NA	5509178	NA	22	25	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ITGB4	17	75721328	75757818	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	43	4	TRUE	DIPLOID	PASS
659_bTo_pair	ITGB5	3	124761948	124901418	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	18	0	FALSE	GAIN	PASS
659_bTo_pair	ITGB6	2	160099666	160200313	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	ITGB7	12	53191318	53207307	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	ITGB8	7	20330702	20415754	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	16	2	FALSE	GAIN	PASS
659_bTo_pair	ITGBL1	13	101452593	101720856	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	47	9	TRUE	CNLOH	PASS
659_bTo_pair	ITIH1	3	52777592	52792068	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	22	2	FALSE	HETLOSS	PASS
659_bTo_pair	ITIH2	10	7703269	7749520	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	22	2	FALSE	CNLOH	PASS
659_bTo_pair	ITIH3	3	52794768	52809009	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	23	2	FALSE	HETLOSS	PASS
659_bTo_pair	ITIH4	3	52812975	52831479	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	24	4	FALSE	HETLOSS	PASS
659_bTo_pair	ITIH5	10	7559270	7666998	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	20	0	FALSE	CNLOH	PASS
659_bTo_pair	ITIH6	23	54748899	54798240	FALSE	1303	0.0232492223836125	56	53426353	57488811	0.365165917639896	4	NA	0.365165917639896	4	NA	4062458	NA	32	23	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ITK	5	157142933	157255191	FALSE	353	-0.698571741790457	22	157138801	161546576	0.291335969972972	1	0	0.291335969972972	1	0	4407775	1	29	25	0	FALSE	HETLOSS	PASS
659_bTo_pair	ITLN1	1	160876539	160885170	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	8	3	FALSE	DIPLOID	PASS
659_bTo_pair	ITLN2	1	160945025	160954799	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ITM2A	23	79360384	79367667	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	6	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	ITM2B	13	48232612	48270357	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	6	0	TRUE	HETLOSS	PASS
659_bTo_pair	ITM2C	2	230864639	230879248	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ITPA	20	3208868	3223870	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ITPK1	14	92936914	93116320	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	ITPKA	15	41493393	41503551	FALSE	894	-0.874433234740196	13	41183964	41662415	0.365165917639896	1	0	0.365165917639896	1	0	478451	1	12	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	ITPKB	1	226631690	226739323	FALSE	77	1.30297279431021	86	226632031	226739199	0.364342740527346	15	NA	0.364342740527346	15	NA	107168	NA	1	31	2	FALSE	AMP	PASS
659_bTo_pair	ITPKC	19	40717103	40740860	FALSE	1173	-0.760690164248215	19	40322104	40807873	0.365165917639896	1	0	0.365165917639896	1	0	485769	1	21	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	ITPR1	3	4493345	4847840	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	61	1	FALSE	HETLOSS	PASS
659_bTo_pair	ITPR2	12	26336515	26833198	FALSE	759	-0.427669886187443	30	25503824	31088026	1	2	1	1	2	1	5584202	1	28	60	1	FALSE	DIPLOID	PASS
659_bTo_pair	ITPR3	6	33620365	33696574	FALSE	391	-0.499783837646083	34	33391964	35241176	NA	2	NA	NA	2	NA	1849212	NA	26	63	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ITPRID1	7	31514071	31658720	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	24	3	FALSE	GAIN	PASS
659_bTo_pair	ITPRID2	2	181891833	181930738	FALSE	157	-0.495064743595466	30	181539293	185786350	1	2	1	1	2	1	4247057	1	12	25	5	FALSE	DIPLOID	PASS
659_bTo_pair	ITPRIP	10	104309698	104338448	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	7	0	FALSE	CNLOH	PASS
659_bTo_pair	ITPRIPL1	2	96325331	96330517	FALSE	128	-0.534748403488722	29	96267335	97158701	NA	2	NA	NA	2	NA	891366	NA	17	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ITPRIPL2	16	19113932	19121629	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ITSN1	21	33642400	33899861	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	41	0	FALSE	DIPLOID	PASS
659_bTo_pair	ITSN2	2	24202864	24360714	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	40	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IVD	15	40405795	40435947	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	IVL	1	152908545	152911886	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	IVNS1ABP	1	185296388	185317329	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	IWS1	2	127436207	127526886	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	IYD	6	150368892	150405969	FALSE	434	-0.174052460462599	51	150020934	150398272	0.365165917639896	3	NA	0.365165917639896	3	NA	377338	NA	4	7	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	IZUMO1	19	48740852	48746909	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	9	2	FALSE	HETLOSS	PASS
659_bTo_pair	IZUMO1R	11	94305592	94307721	FALSE	715	-0.44311716102168	34	90214063	94410681	NA	2	NA	NA	2	NA	4196618	NA	16	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	IZUMO2	19	50152548	50163195	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	IZUMO3	9	24542952	24545946	FALSE	585	-0.464842894155678	32	22447079	32572950	0.365165917639896	2	0	0.365165917639896	2	0	10125871	2	19	6	1	FALSE	CNLOH	PASS
659_bTo_pair	IZUMO4	19	2096429	2099593	FALSE	1118	-0.58059819545476	23	1775405	2151345	0.186356639256811	1	0	0.186356639256811	1	0	375940	1	13	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	JADE1	4	128809623	128875224	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	JADE2	5	134524312	134583230	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	JADE3	23	46912276	47061242	FALSE	1292	0.0982305969328026	59	45151653	47144467	0.308533751035793	5	NA	0.308533751035793	5	NA	1992814	NA	9	14	0	FALSE	AMP (many states)	PASS
659_bTo_pair	JAG1	20	10637684	10673999	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	29	0	FALSE	DIPLOID	PASS
659_bTo_pair	JAG2	14	105140981	105168824	FALSE	885	-0.488568816150345	30	104868462	105529782	1	2	1	1	2	1	661320	1	18	28	0	FALSE	DIPLOID	PASS
659_bTo_pair	JAGN1	3	9890572	9894349	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	JAK1	1	64833229	64966504	TRUE	22	0.349155032374079	65	64833461	65218742	0.364342740527346	6	NA	0.364342740527346	6	NA	385281	NA	2	40	0	FALSE	AMP (many states)	PASS
659_bTo_pair	JAK2	9	4984390	5128183	FALSE	575	0.201993100145251	62	4860168	5090934	0.364342740527346	5	NA	0.364342740527346	5	NA	230766	NA	2	40	6	TRUE	AMP (many states)	PASS
659_bTo_pair	JAK3	19	17824780	17848071	FALSE	1156	1.63362620880808	93	17824819	17847968	0.364342740527346	20	NA	0.364342740527346	20	NA	23149	NA	1	31	3	FALSE	AMP	PASS
659_bTo_pair	JAKMIP1	4	6026203	6200591	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	21	1	FALSE	GAIN	PASS
659_bTo_pair	JAKMIP2	5	147585439	147782848	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	25	2	FALSE	HETLOSS	PASS
659_bTo_pair	JAKMIP3	10	132104671	132184809	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	26	4	FALSE	CNLOH	PASS
659_bTo_pair	JAM2	21	25639272	25717562	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	JAM3	11	134068925	134152001	FALSE	734	-0.516486951202814	27	128842412	134387591	1	2	1	1	2	1	5545179	1	27	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	JAML	11	118193740	118225094	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	12	2	FALSE	HETLOSS	PASS
659_bTo_pair	JARID2	6	15246296	15522040	TRUE	370	-0.377368469329801	39	15246548	20212233	NA	2	NA	NA	2	NA	4965685	NA	18	24	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	JAZF1	7	27830573	28180743	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	5	0	FALSE	GAIN	PASS
659_bTo_pair	JCAD	10	30012800	30115494	FALSE	638	-0.441875687518437	32	27112127	31908266	0.365165917639896	2	0	0.365165917639896	2	0	4796139	2	18	18	1	FALSE	CNLOH	PASS
659_bTo_pair	JCHAIN	4	70655541	70681817	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	JDP2	14	75427716	75474111	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	JHY	11	122882528	122959798	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	JKAMP	14	59484443	59505410	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	JMJD1C	10	63167221	63521850	FALSE	649	-0.498971247588349	34	63133428	68527348	NA	2	NA	NA	2	NA	5393920	NA	15	44	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	JMJD4	1	227730425	227735411	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	JMJD6	17	76712832	76726799	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	JMJD7	15	41828085	41837581	FALSE	896	-0.768052081406389	19	41775359	41841304	0.365165917639896	1	0	0.365165917639896	1	0	65945	1	4	9	2	FALSE	HETLOSS	PASS
659_bTo_pair	JMJD7-PLA2G4B	15	41828095	41848155	FALSE	896	-0.768052081406389	19	41775359	41841304	0.365165917639896	1	0	0.365165917639896	1	0	65945	1	4	30	4	TRUE	HETLOSS	PASS
659_bTo_pair	JMJD8	16	681671	684528	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	10	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	JMY	5	79236189	79327215	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	16	1	FALSE	HETLOSS	PASS
659_bTo_pair	JOSD1	22	38685543	38701556	FALSE	1265	-0.53141020507802	29	38041114	39152464	NA	2	NA	NA	2	NA	1111350	NA	31	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	JOSD2	19	50505998	50511353	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	JPH1	8	74234700	74321328	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	11	1	FALSE	GAIN	PASS
659_bTo_pair	JPH2	20	44111695	44187578	FALSE	1210	-0.476296426145969	34	43513997	45110019	NA	2	NA	NA	2	NA	1596022	NA	26	12	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	JPH3	16	87601835	87698156	FALSE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	JPH4	14	23568035	23578800	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	JPT1	17	75135248	75168281	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	JPT2	16	1678256	1702280	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	JRK	8	142657460	142681968	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	10	6	FALSE	DIPLOID	PASS
659_bTo_pair	JRKL	11	96389989	96507574	FALSE	717	-0.427991611956568	34	94512673	100992623	NA	2	NA	NA	2	NA	6479950	NA	19	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	JSRP1	19	2252252	2269759	FALSE	1120	-0.63588318052236	23	2233887	3062886	0.186356639256811	1	0	0.186356639256811	1	0	828999	1	28	8	2	FALSE	HETLOSS	PASS
659_bTo_pair	JTB	1	153974269	153977688	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	JUN	1	58780788	58784327	FALSE	20	1.46268531352112	90	58681961	58784075	0.364342740527346	17	NA	0.364342740527346	17	NA	102114	NA	2	13	0	FALSE	AMP	PASS
659_bTo_pair	JUNB	19	12791496	12793315	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	JUND	19	18279760	18281622	FALSE	1159	-0.165917001507678	49	18177228	19138502	0.365165917639896	3	1	0.365165917639896	3	1	961274	2	36	5	0	FALSE	GAIN	PASS
659_bTo_pair	JUP	17	41754604	41786931	FALSE	1036	-0.764029118419186	19	41624551	42193564	0.365165917639896	1	0	0.365165917639896	1	0	569013	1	25	16	2	FALSE	HETLOSS	PASS
659_bTo_pair	KAAG1	6	24356903	24358284	FALSE	373	-0.695027086668472	22	24174718	26017145	0.291335969972972	1	0	0.291335969972972	1	0	1842427	1	23	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	KALRN	3	124080023	124726325	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	70	6	FALSE	GAIN	PASS
659_bTo_pair	KANK1	9	470291	746106	FALSE	570	-0.801602085682206	16	14889	1057241	0.365165917639896	1	0	0.365165917639896	1	0	1042352	1	9	23	1	FALSE	HETLOSS	PASS
659_bTo_pair	KANK2	19	11164267	11197791	FALSE	1143	-0.599591757528625	23	11089545	11375998	0.186356639256811	1	0	0.186356639256811	1	0	286453	1	11	17	5	FALSE	HETLOSS	PASS
659_bTo_pair	KANK3	19	8322584	8343262	FALSE	1132	-0.583194501817822	26	7916513	8843246	NA	2	NA	NA	2	NA	926733	NA	25	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KANK4	1	62236979	62319414	FALSE	21	-0.414935064922519	39	59321678	64830856	NA	2	NA	NA	2	NA	5509178	NA	22	18	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KANSL1	17	46029916	46225389	FALSE	1046	-0.746772159255206	19	45395806	47696360	0.365165917639896	1	0	0.365165917639896	1	0	2300554	1	26	21	2	FALSE	HETLOSS	PASS
659_bTo_pair	KANSL1L	2	210021423	210171383	FALSE	171	-0.69211072472077	22	209829280	210677970	0.291335969972972	1	0	0.291335969972972	1	0	848690	1	7	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	KANSL2	12	48653401	48682238	FALSE	768	-0.491963868457131	34	48045387	49018767	NA	2	NA	NA	2	NA	973380	NA	28	10	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KANSL3	2	96593170	96642787	FALSE	128	-0.534748403488722	29	96267335	97158701	NA	2	NA	NA	2	NA	891366	NA	17	23	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KARS	16	75627474	75648643	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	KAT14	20	18138118	18188387	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	KAT2A	17	42113108	42121358	FALSE	1036	-0.764029118419186	19	41624551	42193564	0.365165917639896	1	0	0.365165917639896	1	0	569013	1	25	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	KAT2B	3	20040023	20154404	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	19	1	FALSE	HETLOSS	PASS
659_bTo_pair	KAT5	11	65711996	65719604	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	14	0	FALSE	GAIN	PASS
659_bTo_pair	KAT6A	8	41929479	42052026	TRUE	537	0.870092669882152	76	41929610	41987516	0.364342740527346	10	NA	0.364342740527346	10	NA	57906	NA	1	58	0	TRUE	AMP	PASS
659_bTo_pair	KAT6B	10	74824927	75032624	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	32	0	FALSE	CNLOH	PASS
659_bTo_pair	KAT7	17	49788555	49835030	FALSE	1053	-0.561829441831031	26	49646906	50626743	NA	2	NA	NA	2	NA	979837	NA	25	15	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KAT8	16	31115754	31131393	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	KATNA1	6	149594873	149648972	FALSE	431	-0.504239059693729	30	143136912	149638436	1	2	1	1	2	1	6501524	1	29	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	KATNAL1	13	30202630	30307484	FALSE	828	-0.893717680890687	13	28659152	32311865	0.365165917639896	1	0	0.365165917639896	1	0	3652713	1	17	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	KATNAL2	18	46917492	47102243	FALSE	1100	-0.758401070483502	19	45624783	47803983	0.365165917639896	1	0	0.365165917639896	1	0	2179200	1	22	32	1	FALSE	HETLOSS	PASS
659_bTo_pair	KATNB1	16	57735730	57757250	FALSE	971	-0.537344591536493	29	57069860	57923335	NA	2	NA	NA	2	NA	853475	NA	21	19	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KATNBL1	15	34140674	34210096	FALSE	888	-0.723950250184678	19	32774281	34342000	0.365165917639896	1	0	0.365165917639896	1	0	1567719	1	10	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	KAZALD1	10	101061841	101068131	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	6	0	FALSE	CNLOH	PASS
659_bTo_pair	KAZN	1	13892792	15118043	FALSE	6	-0.41295085321191	39	13779356	15847467	NA	2	NA	NA	2	NA	2068111	NA	18	19	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KBTBD11	8	1973878	2006936	FALSE	510	-0.906181747703467	12	166288	7823395	0.365165917639896	1	0	0.365165917639896	1	0	7657107	1	48	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	KBTBD11-OT1	8	1763888	1958627	FALSE	510	-0.906181747703467	12	166288	7823395	0.365165917639896	1	0	0.365165917639896	1	0	7657107	1	48	37	5	FALSE	HETLOSS	PASS
659_bTo_pair	KBTBD12	3	127915232	127987671	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	10	0	FALSE	GAIN	PASS
659_bTo_pair	KBTBD13	15	65076816	65079939	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	KBTBD2	7	32868172	32894131	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	9	1	FALSE	GAIN	PASS
659_bTo_pair	KBTBD3	11	106051098	106077765	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	KBTBD4	11	47572197	47579015	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	KBTBD6	13	41127569	41132746	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	KBTBD7	13	41189833	41194566	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	KBTBD8	3	66998307	67011210	FALSE	228	-0.860828429618822	13	64010871	69385924	0.365165917639896	1	0	0.365165917639896	1	0	5375053	1	16	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	KCMF1	2	84971093	85059472	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	KCNA1	12	4909905	4918256	FALSE	741	-0.251609480735115	44	4489790	6567957	0.345317016959666	3	1	0.345317016959666	3	1	2078167	2	28	6	0	FALSE	GAIN	PASS
659_bTo_pair	KCNA10	1	110517217	110519175	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	7	2	FALSE	HETLOSS	PASS
659_bTo_pair	KCNA2	1	110519837	110631474	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	KCNA3	1	110672465	110675033	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	KCNA4	11	30009741	30017023	FALSE	690	-0.499672577426227	34	26697185	32104345	NA	2	NA	NA	2	NA	5407160	NA	20	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KCNA5	12	5043989	5046788	FALSE	741	-0.251609480735115	44	4489790	6567957	0.345317016959666	3	1	0.345317016959666	3	1	2078167	2	28	7	0	FALSE	GAIN	PASS
659_bTo_pair	KCNA6	12	4809176	4813412	FALSE	741	-0.251609480735115	44	4489790	6567957	0.345317016959666	3	1	0.345317016959666	3	1	2078167	2	28	7	1	FALSE	GAIN	PASS
659_bTo_pair	KCNA7	19	49067418	49072941	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	KCNAB1	3	156037701	156539138	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	18	2	FALSE	GAIN	PASS
659_bTo_pair	KCNAB2	1	5991466	6101193	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	18	4	FALSE	DIPLOID	PASS
659_bTo_pair	KCNAB3	17	7921859	7929803	FALSE	1002	-0.806633716627379	14	7689340	8047671	0.365165917639896	1	0	0.365165917639896	1	0	358331	1	15	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	KCNB1	20	49293394	49484297	FALSE	1216	-0.465272765977354	30	47658376	50278257	1	2	1	1	2	1	2619881	1	18	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	KCNB2	8	72537391	72938349	FALSE	553	-0.248188717260806	46	68331252	73878866	0.298322295679939	3	NA	0.298322295679939	3	NA	5547614	NA	20	12	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	KCNC1	11	17734774	17856804	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	KCNC2	12	75040077	75209868	FALSE	792	-0.349776929755415	43	71610399	76348235	0.192136715055622	3	NA	0.192136715055622	3	NA	4737836	NA	18	13	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	KCNC3	19	50311937	50333515	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	KCNC4	1	110211343	110283100	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	KCND1	23	48961378	48971569	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	11	0	FALSE	AMP (many states)	PASS
659_bTo_pair	KCND2	7	120273668	120750331	FALSE	490	-0.576498321273708	26	116888215	124790543	NA	2	NA	NA	2	NA	7902328	NA	33	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KCND3	1	111770662	111989155	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	KCNE1	21	34446688	34512275	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	KCNE2	21	34364024	34371389	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	KCNE3	11	74454841	74467729	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	2	1	FALSE	GAIN	PASS
659_bTo_pair	KCNE4	2	223051814	223198399	FALSE	181	-0.697161202800517	22	222304006	224401731	0.291335969972972	1	0	0.291335969972972	1	0	2097725	1	12	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	KCNE5	23	109623700	109625172	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	2	0	FALSE	AMP (many states)	PASS
659_bTo_pair	KCNF1	2	10911937	10914225	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	KCNG1	20	51003656	51023129	FALSE	1218	-0.459978768286429	34	50587211	53185754	NA	2	NA	NA	2	NA	2598543	NA	12	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KCNG2	18	79863668	79900184	FALSE	1113	-0.883471952658051	12	75410842	80247341	0.365165917639896	1	0	0.365165917639896	1	0	4836499	1	17	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	KCNG3	2	42442017	42494097	FALSE	106	-0.392858868113437	39	42335725	46184779	NA	2	NA	NA	2	NA	3849054	NA	22	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KCNG4	16	84218667	84239750	FALSE	987	-0.578642888038652	23	81999201	85806436	0.186356639256811	1	0	0.186356639256811	1	0	3807235	1	31	7	2	FALSE	HETLOSS	PASS
659_bTo_pair	KCNH1	1	210676823	211134180	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	KCNH2	7	150944961	150978315	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	24	0	FALSE	HETLOSS	PASS
659_bTo_pair	KCNH3	12	49539157	49558308	FALSE	770	-0.500134310902258	34	49065087	50081631	NA	2	NA	NA	2	NA	1016544	NA	25	24	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KCNH4	17	42156891	42181278	FALSE	1036	-0.764029118419186	19	41624551	42193564	0.365165917639896	1	0	0.365165917639896	1	0	569013	1	25	21	1	FALSE	HETLOSS	PASS
659_bTo_pair	KCNH5	14	62699454	63102037	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	KCNH6	17	63523334	63548977	FALSE	1064	-0.419094292936043	39	61867575	63873599	NA	2	NA	NA	2	NA	2006024	NA	24	19	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KCNH7	2	162371407	162838730	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	21	3	FALSE	DIPLOID	PASS
659_bTo_pair	KCNH8	3	19148454	19535646	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	KCNIP1	5	170353487	170736632	FALSE	356	-0.773912908266316	17	162095550	171298806	0.365165917639896	1	0	0.365165917639896	1	0	9203256	1	21	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	KCNIP2	10	101825974	101843920	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	11	1	FALSE	CNLOH	PASS
659_bTo_pair	KCNIP3	2	95297304	95386083	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	KCNIP4	4	20728616	21948799	FALSE	278	-0.217595572850614	44	20704713	38137253	0.345317016959666	3	1	0.345317016959666	3	1	17432540	2	29	11	1	FALSE	GAIN	PASS
659_bTo_pair	KCNJ1	11	128836315	128867373	FALSE	733	1.22650714458615	84	128459018	128840166	0.364342740527346	14	NA	0.364342740527346	14	NA	381148	NA	3	7	0	TRUE	AMP	PASS
659_bTo_pair	KCNJ10	1	159998651	160070483	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	KCNJ11	11	17385859	17389331	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	KCNJ12	17	21376197	21419872	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	5	5	FALSE	DIPLOID	PASS
659_bTo_pair	KCNJ13	2	232766464	232776568	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	KCNJ14	19	48455509	48466980	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	KCNJ15	21	38155549	38307357	FALSE	1228	-0.430637379115077	30	36009679	38367602	1	2	1	1	2	1	2357923	1	17	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	KCNJ16	17	70053429	70135608	FALSE	1073	-0.526841420951416	29	68868095	70175063	NA	2	NA	NA	2	NA	1306968	NA	8	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KCNJ18	17	21692523	21704612	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	KCNJ2	17	70168673	70180048	FALSE	1073	-0.526841420951416	29	68868095	70175063	NA	2	NA	NA	2	NA	1306968	NA	8	5	1	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	KCNJ3	2	154698299	154858352	FALSE	149	-0.454179855872301	30	147845197	157628657	1	2	1	1	2	1	9783460	1	30	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	KCNJ4	22	38426327	38455199	FALSE	1265	-0.53141020507802	29	38041114	39152464	NA	2	NA	NA	2	NA	1111350	NA	31	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KCNJ5	11	128891356	128921035	FALSE	734	-0.516486951202814	27	128842412	134387591	1	2	1	1	2	1	5545179	1	27	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	KCNJ6	21	37607376	38121345	FALSE	1228	-0.430637379115077	30	36009679	38367602	1	2	1	1	2	1	2357923	1	17	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	KCNJ8	12	21764955	21775581	FALSE	757	-0.490002350483383	34	21512373	25195063	NA	2	NA	NA	2	NA	3682690	NA	15	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KCNJ9	1	160081570	160090563	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	KCNK1	1	233614004	233672512	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	KCNK10	14	88180103	88326907	FALSE	870	-0.471399657488227	30	81180359	92000019	1	2	1	1	2	1	10819660	1	29	12	4	FALSE	DIPLOID	PASS
659_bTo_pair	KCNK12	2	47516581	47570939	FALSE	109	0.265429574535633	63	47340240	48375433	0.364342740527346	6	NA	0.364342740527346	6	NA	1035193	NA	6	26	1	FALSE	AMP (many states)	PASS
659_bTo_pair	KCNK13	14	90061765	90185857	FALSE	870	-0.471399657488227	30	81180359	92000019	1	2	1	1	2	1	10819660	1	29	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	KCNK15	20	44745780	44752313	FALSE	1210	-0.476296426145969	34	43513997	45110019	NA	2	NA	NA	2	NA	1596022	NA	26	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KCNK16	6	39314698	39322968	FALSE	397	-0.509151429367598	27	37213022	41687167	1	2	1	1	2	1	4474145	1	33	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	KCNK17	6	39299001	39314553	FALSE	397	-0.509151429367598	27	37213022	41687167	1	2	1	1	2	1	4474145	1	33	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	KCNK18	10	117197489	117210299	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	6	0	FALSE	CNLOH	PASS
659_bTo_pair	KCNK2	1	215005775	215237093	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	KCNK3	2	26692690	26733420	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	KCNK4	11	64291302	64300031	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	KCNK5	6	39188973	39229450	FALSE	397	-0.509151429367598	27	37213022	41687167	1	2	1	1	2	1	4474145	1	33	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	KCNK6	19	38319844	38332076	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	KCNK7	11	65592855	65595996	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	6	0	FALSE	GAIN	PASS
659_bTo_pair	KCNK9	8	139600838	139704109	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	KCNMA1	10	76869601	77638369	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	38	0	FALSE	CNLOH	PASS
659_bTo_pair	KCNMB1	5	170374671	170389677	FALSE	356	-0.773912908266316	17	162095550	171298806	0.365165917639896	1	0	0.365165917639896	1	0	9203256	1	21	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	KCNMB2	3	178272932	178844429	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	5	0	FALSE	GAIN	PASS
659_bTo_pair	KCNMB3	3	179236691	179267002	FALSE	252	2.30320976413867	110	179148454	179240127	0.364342740527346	34	NA	0.364342740527346	34	NA	91673	NA	2	22	0	TRUE	AMP	PASS
659_bTo_pair	KCNMB4	12	70366276	70434292	FALSE	790	-0.377310724638489	39	69586733	71157609	NA	2	NA	NA	2	NA	1570876	NA	11	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KCNN1	19	17951293	18000080	FALSE	1157	-0.332253297419471	43	17859980	18149705	0.192136715055622	3	NA	0.192136715055622	3	NA	289725	NA	7	11	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	KCNN2	5	114055545	114496500	FALSE	331	-0.706980197323045	20	112861366	122075379	0.365165917639896	1	0	0.365165917639896	1	0	9214013	1	31	12	2	FALSE	HETLOSS	PASS
659_bTo_pair	KCNN3	1	154697455	154870280	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	KCNN4	19	43766533	43781261	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	KCNQ1	11	2444684	2849110	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	19	1	FALSE	HETLOSS	PASS
659_bTo_pair	KCNQ2	20	63400210	63472677	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	21	1	FALSE	DIPLOID	PASS
659_bTo_pair	KCNQ3	8	132120858	132481019	FALSE	565	-0.282741903777565	44	129748604	134610527	0.345317016959666	3	1	0.345317016959666	3	1	4861923	2	18	21	0	FALSE	GAIN	PASS
659_bTo_pair	KCNQ4	1	40783814	40840452	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	KCNQ5	6	72621792	73198851	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	KCNRG	13	50015254	50020922	FALSE	835	-0.766581964775609	19	48490223	50953919	0.365165917639896	1	0	0.365165917639896	1	0	2463696	1	18	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	KCNS1	20	45092310	45101112	FALSE	1210	-0.476296426145969	34	43513997	45110019	NA	2	NA	NA	2	NA	1596022	NA	26	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KCNS2	8	98427022	98432848	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	6	0	FALSE	GAIN	PASS
659_bTo_pair	KCNS3	2	17877847	18361616	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	6	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KCNT1	9	135702185	135795508	FALSE	629	-0.955558414525678	9	134750808	136485014	0.291955377254426	0	0	0.291955377254426	0	0	1734206	0	30	36	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	KCNT2	1	196225779	196609225	FALSE	60	-0.443336911293225	30	196228264	201209660	1	2	1	1	2	1	4981396	1	29	31	2	FALSE	DIPLOID	PASS
659_bTo_pair	KCNU1	8	36784324	36936128	FALSE	528	-1.13877676700397	7	33372685	36932925	0.365165917639896	0	0	0.365165917639896	0	0	3560240	0	7	29	0	TRUE	HOMDEL	PASS
659_bTo_pair	KCNV1	8	109963645	109975847	FALSE	561	-0.210477706860293	47	102652438	116770243	0.365165917639896	3	1	0.365165917639896	3	1	14117805	2	32	8	0	FALSE	GAIN	PASS
659_bTo_pair	KCNV2	9	2717502	2730037	FALSE	574	-0.919846303005392	13	2198627	4849539	0.365165917639896	1	0	0.365165917639896	1	0	2650912	1	11	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	KCP	7	128862451	128910719	FALSE	492	-0.463656181520944	30	126439208	129166764	1	2	1	1	2	1	2727556	1	27	48	4	FALSE	DIPLOID	PASS
659_bTo_pair	KCTD1	18	26454910	26657401	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	12	0	FALSE	GAIN	PASS
659_bTo_pair	KCTD10	12	109448656	109477544	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	KCTD11	17	7351889	7354944	FALSE	1000	-0.750226164220686	19	7324407	7655594	0.365165917639896	1	0	0.365165917639896	1	0	331187	1	31	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	KCTD12	13	76880166	76886390	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	4	0	FALSE	CNLOH	PASS
659_bTo_pair	KCTD13	16	29905012	29927035	FALSE	965	-0.735005669796309	19	28989573	29982749	0.365165917639896	1	0	0.365165917639896	1	0	993176	1	25	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	KCTD14	11	78015715	78046191	FALSE	712	-0.188800010767045	48	77590086	86068715	0.365165917639896	3	NA	0.365165917639896	3	NA	8478629	NA	30	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	KCTD15	19	33795933	33815763	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	KCTD16	5	144170832	144485686	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	KCTD17	22	37051736	37063390	FALSE	1263	-0.528184158498335	29	36991204	37967644	NA	2	NA	NA	2	NA	976440	NA	31	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KCTD18	2	200488952	200519784	FALSE	164	-0.381871160033202	39	198084145	201228955	NA	2	NA	NA	2	NA	3144810	NA	19	8	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KCTD19	16	67289428	67326763	FALSE	976	-0.467350965811123	34	67110264	67538977	NA	2	NA	NA	2	NA	428713	NA	24	19	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KCTD2	17	75032575	75065889	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	KCTD20	6	36442767	36491143	FALSE	393	-0.47521086997284	30	35476361	36677919	1	2	1	1	2	1	1201558	1	21	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	KCTD21	11	78171249	78188822	FALSE	712	-0.188800010767045	48	77590086	86068715	0.365165917639896	3	NA	0.365165917639896	3	NA	8478629	NA	30	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	KCTD3	1	215567392	215621807	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	20	3	FALSE	DIPLOID	PASS
659_bTo_pair	KCTD4	13	45192853	45194717	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	KCTD5	16	2682475	2709030	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	KCTD6	3	58492114	58502360	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	KCTD7	7	66628767	66649067	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	KCTD8	4	44173909	44448807	FALSE	282	-0.204234033978701	47	41752697	49032685	0.365165917639896	3	1	0.365165917639896	3	1	7279988	2	31	6	0	FALSE	GAIN	PASS
659_bTo_pair	KCTD9	8	25427847	25458476	FALSE	520	-0.862302460890099	13	23703081	26040940	0.365165917639896	1	0	0.365165917639896	1	0	2337859	1	12	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	KDELC1	13	102784281	102799007	FALSE	840	-0.335776033141145	43	102193037	102839809	0.192136715055622	3	NA	0.192136715055622	3	NA	646772	NA	9	11	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	KDELC2	11	108472105	108498432	FALSE	723	-0.542672588801529	29	108383083	111912852	NA	2	NA	NA	2	NA	3529769	NA	24	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KDELR1	19	48382570	48391553	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	KDELR2	7	6445953	6484242	FALSE	456	-0.240618790532325	45	6028682	12688782	0.279823559258657	3	0	0.279823559258657	3	0	6660100	3	32	8	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	KDELR3	22	38468062	38483447	FALSE	1265	-0.53141020507802	29	38041114	39152464	NA	2	NA	NA	2	NA	1111350	NA	31	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KDF1	1	26949562	26960406	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	KDM1A	1	23019443	23083689	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	KDM1B	6	18155329	18223853	FALSE	370	-0.377368469329801	39	15246548	20212233	NA	2	NA	NA	2	NA	4965685	NA	18	16	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KDM2A	11	67119269	67258087	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	24	0	FALSE	GAIN	PASS
659_bTo_pair	KDM2B	12	121429097	121581015	FALSE	812	-0.468438273619664	34	121006302	121793667	NA	2	NA	NA	2	NA	787365	NA	12	30	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KDM3A	2	86440647	86492716	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	29	0	FALSE	DIPLOID	PASS
659_bTo_pair	KDM3B	5	138352596	138437028	FALSE	336	-0.752536733071469	19	135941639	138575278	0.365165917639896	1	0	0.365165917639896	1	0	2633639	1	24	32	0	FALSE	HETLOSS	PASS
659_bTo_pair	KDM4A	1	43650158	43705515	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	23	0	FALSE	DIPLOID	PASS
659_bTo_pair	KDM4B	19	4969113	5153595	FALSE	1124	-0.62008955817668	23	4168484	5151543	0.186356639256811	1	0	0.186356639256811	1	0	983059	1	28	28	3	TRUE	HETLOSS	PASS
659_bTo_pair	KDM4C	9	6720863	7175648	FALSE	579	-0.757785700087963	19	5656721	7798588	0.365165917639896	1	0	0.365165917639896	1	0	2141867	1	11	25	4	FALSE	HETLOSS	PASS
659_bTo_pair	KDM4D	11	94973681	94999518	FALSE	717	-0.427991611956568	34	94512673	100992623	NA	2	NA	NA	2	NA	6479950	NA	19	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KDM4E	11	95025258	95027596	FALSE	717	-0.427991611956568	34	94512673	100992623	NA	2	NA	NA	2	NA	6479950	NA	19	7	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KDM5A	12	280129	389454	FALSE	736	1.55298904058497	91	280167	389210	0.364342740527346	19	NA	0.364342740527346	19	NA	109043	NA	1	53	0	FALSE	AMP	PASS
659_bTo_pair	KDM5B	1	202724495	202809470	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	31	0	FALSE	DIPLOID	PASS
659_bTo_pair	KDM5C	23	53191321	53225422	TRUE	1300	1.73696830528359	97	53191118	53225199	0.364342740527346	22	NA	0.364342740527346	22	NA	34081	NA	1	41	0	FALSE	AMP	PASS
659_bTo_pair	KDM6A	23	44873177	45112602	TRUE	1291	1.43484148894649	88	44873358	45112588	0.364342740527346	17	NA	0.364342740527346	17	NA	239230	NA	1	51	2	FALSE	AMP	PASS
659_bTo_pair	KDM6B	17	7839904	7854796	FALSE	1002	-0.806633716627379	14	7689340	8047671	0.365165917639896	1	0	0.365165917639896	1	0	358331	1	15	27	2	FALSE	HETLOSS	PASS
659_bTo_pair	KDM7A	7	140084746	140177035	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	21	1	FALSE	DIPLOID	PASS
659_bTo_pair	KDM8	16	27203495	27221768	FALSE	960	-0.449512584299377	34	23658521	27234165	NA	2	NA	NA	2	NA	3575644	NA	16	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KDR	4	55078259	55125595	FALSE	284	0.641400756507207	71	54252534	55125526	0.364342740527346	8	NA	0.364342740527346	8	NA	872992	NA	4	38	2	FALSE	INDETERMINATE	PASS
659_bTo_pair	KDSR	18	63327726	63367510	FALSE	1111	-0.872352968035647	12	63331800	74584528	0.365165917639896	1	0	0.365165917639896	1	0	11252728	1	31	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	KEAP1	19	10486120	10503741	TRUE	1140	1.39093669578364	87	10467544	10514059	0.364342740527346	16	NA	0.364342740527346	16	NA	46515	NA	3	14	2	FALSE	AMP	PASS
659_bTo_pair	KEL	7	142941114	142962681	FALSE	502	0.979485592190856	78	142941365	142962216	0.364342740527346	11	NA	0.364342740527346	11	NA	20851	NA	1	21	0	FALSE	AMP	PASS
659_bTo_pair	KERA	12	91050491	91057983	FALSE	794	-0.258431968401282	46	85301316	91178343	0.298322295679939	3	NA	0.298322295679939	3	NA	5877027	NA	19	5	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	KHDC1	6	73241314	73310365	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	KHDC1L	6	73223544	73225770	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	KHDC3L	6	73362677	73364171	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	KHDC4	1	155913043	155934400	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	KHDRBS1	1	32013829	32060850	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	KHDRBS2	6	61679960	62286227	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	KHDRBS3	8	135457457	135656722	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	KHK	2	27086747	27100772	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	KHNYN	14	24429286	24441834	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	17	4	FALSE	DIPLOID	PASS
659_bTo_pair	KHSRP	19	6413348	6424794	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	20	2	FALSE	DIPLOID	PASS
659_bTo_pair	KIAA0040	1	175156987	175192999	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	KIAA0100	17	28614440	28645454	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	46	0	FALSE	DIPLOID	PASS
659_bTo_pair	KIAA0232	4	6781375	6884170	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	20	0	FALSE	GAIN	PASS
659_bTo_pair	KIAA0319	6	24544104	24646155	FALSE	373	-0.695027086668472	22	24174718	26017145	0.291335969972972	1	0	0.291335969972972	1	0	1842427	1	23	25	0	FALSE	HETLOSS	PASS
659_bTo_pair	KIAA0319L	1	35433490	35557950	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	22	2	FALSE	DIPLOID	PASS
659_bTo_pair	KIAA0355	19	34254537	34355586	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	19	3	FALSE	HETLOSS	PASS
659_bTo_pair	KIAA0391	14	35121846	35277614	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	KIAA0408	6	127440343	127459391	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	KIAA0513	16	85027751	85094230	FALSE	987	-0.578642888038652	23	81999201	85806436	0.186356639256811	1	0	0.186356639256811	1	0	3807235	1	31	14	1	FALSE	HETLOSS	PASS
659_bTo_pair	KIAA0556	16	27550133	27780369	FALSE	962	-0.522336070959039	29	27403203	28925074	NA	2	NA	NA	2	NA	1521871	NA	25	36	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KIAA0586	14	58427385	58551289	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	35	0	FALSE	DIPLOID	PASS
659_bTo_pair	KIAA0753	17	6578148	6640927	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	22	6	FALSE	HETLOSS	PASS
659_bTo_pair	KIAA0825	5	94152966	94618597	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	25	0	FALSE	HETLOSS	PASS
659_bTo_pair	KIAA0895	7	36324221	36390125	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	13	1	FALSE	GAIN	PASS
659_bTo_pair	KIAA0895L	16	67175602	67184040	FALSE	976	-0.467350965811123	34	67110264	67538977	NA	2	NA	NA	2	NA	428713	NA	24	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KIAA0930	22	45190338	45240769	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	12	0	FALSE	CNLOH	PASS
659_bTo_pair	KIAA1024	15	79432516	79472290	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	12	2	FALSE	HETLOSS	PASS
659_bTo_pair	KIAA1024L	5	129748079	129766732	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	KIAA1109	4	122152333	122362758	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	108	4	FALSE	DIPLOID	PASS
659_bTo_pair	KIAA1143	3	44737661	44761662	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	KIAA1147	7	141656728	141702153	FALSE	500	-0.745042700177313	19	140929950	142218464	0.365165917639896	1	0	0.365165917639896	1	0	1288514	1	15	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	KIAA1191	5	176346061	176361968	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	KIAA1210	23	119078635	119150579	FALSE	1326	0.081501992784242	59	111246621	119452040	0.308533751035793	5	NA	0.308533751035793	5	NA	8205419	NA	28	26	1	FALSE	AMP (many states)	PASS
659_bTo_pair	KIAA1211	4	56049073	56328625	FALSE	285	-0.676685623676823	22	55346376	64409389	0.291335969972972	1	0	0.291335969972972	1	0	9063013	1	23	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	KIAA1211L	2	98793846	98936259	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	KIAA1217	10	23694746	24547848	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	35	2	FALSE	CNLOH	PASS
659_bTo_pair	KIAA1257	3	128909866	129002690	FALSE	240	-0.311262736248051	40	128620554	130098189	0.308149309490068	3	1	0.308149309490068	3	1	1477635	2	22	26	2	FALSE	GAIN	PASS
659_bTo_pair	KIAA1324	1	109113679	109206781	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	26	0	FALSE	HETLOSS	PASS
659_bTo_pair	KIAA1324L	7	86876906	87059699	FALSE	477	-0.558719554035895	26	86880427	87472624	NA	2	NA	NA	2	NA	592197	NA	5	25	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KIAA1328	18	36829106	37232172	FALSE	1096	-1.21893607076254	6	36730705	37565641	0.365165917639896	0	0	0.365165917639896	0	0	834936	0	4	13	2	FALSE	HOMDEL	PASS
659_bTo_pair	KIAA1522	1	32741885	32774970	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	17	1	FALSE	DIPLOID	PASS
659_bTo_pair	KIAA1549	7	138831381	138981318	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	33	2	FALSE	DIPLOID	PASS
659_bTo_pair	KIAA1549L	11	33376466	33674102	FALSE	692	-0.391103687852083	35	32583952	33774394	1	2	1	1	2	1	1190442	1	13	32	6	FALSE	DIPLOID	PASS
659_bTo_pair	KIAA1551	12	31959370	31993107	FALSE	760	-0.171000692864655	50	31089058	38321207	0.218007130395584	4	2	0.218007130395584	4	2	7232149	2	15	22	1	FALSE	TETRAPLOID	PASS
659_bTo_pair	KIAA1586	6	57046532	57055239	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	KIAA1614	1	180913154	180951614	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	19	2	FALSE	DIPLOID	PASS
659_bTo_pair	KIAA1671	22	24952730	25197448	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	23	4	FALSE	CNLOH	PASS
659_bTo_pair	KIAA1755	20	38210488	38260772	FALSE	1205	-0.619744376635615	23	37518926	41023791	0.186356639256811	1	0	0.186356639256811	1	0	3504865	1	19	22	1	FALSE	HETLOSS	PASS
659_bTo_pair	KIAA1841	2	61065871	61138034	FALSE	118	-0.436789875977301	34	60942397	61470693	NA	2	NA	NA	2	NA	528296	NA	5	21	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KIAA1958	9	112486847	112669397	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	KIAA2012	2	202073289	202205203	FALSE	166	-0.425780118113581	30	201288659	203854096	1	2	1	1	2	1	2565437	1	22	24	3	FALSE	DIPLOID	PASS
659_bTo_pair	KIAA2013	1	11919591	11926428	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	KIAA2026	9	5881596	6007901	FALSE	579	-0.757785700087963	19	5656721	7798588	0.365165917639896	1	0	0.365165917639896	1	0	2141867	1	11	34	5	FALSE	HETLOSS	PASS
659_bTo_pair	KIDINS220	2	8721081	8837630	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	37	0	FALSE	DIPLOID	PASS
659_bTo_pair	KIF11	10	92593286	92655395	FALSE	662	-0.410954559094016	36	89715119	94762760	0.365165917639896	2	0	0.365165917639896	2	0	5047641	2	33	23	0	FALSE	CNLOH	PASS
659_bTo_pair	KIF12	9	114086126	114099291	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	KIF13A	6	17759183	17987623	FALSE	370	-0.377368469329801	39	15246548	20212233	NA	2	NA	NA	2	NA	4965685	NA	18	45	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KIF13B	8	29067279	29263124	FALSE	523	-1.08188475411826	8	27469296	29263060	0.342391532111247	0	0	0.342391532111247	0	0	1793764	0	18	44	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	KIF14	1	200551497	200620734	FALSE	60	-0.443336911293225	30	196228264	201209660	1	2	1	1	2	1	4981396	1	29	36	1	FALSE	DIPLOID	PASS
659_bTo_pair	KIF15	3	44761717	44873376	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	40	0	FALSE	HETLOSS	PASS
659_bTo_pair	KIF16B	20	16272104	16573434	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	34	3	FALSE	DIPLOID	PASS
659_bTo_pair	KIF17	1	20664014	20718017	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	22	2	FALSE	DIPLOID	PASS
659_bTo_pair	KIF18A	11	28020620	28108308	FALSE	690	-0.499672577426227	34	26697185	32104345	NA	2	NA	NA	2	NA	5407160	NA	20	20	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KIF18B	17	44924709	44947711	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	18	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KIF19	17	74326210	74355820	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	23	0	FALSE	DIPLOID	PASS
659_bTo_pair	KIF1A	2	240713761	240821036	FALSE	194	-0.588828356865968	23	240025214	241817025	0.186356639256811	1	0	0.186356639256811	1	0	1791811	1	34	53	0	FALSE	HETLOSS	PASS
659_bTo_pair	KIF1B	1	10210805	10381603	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	52	0	FALSE	DIPLOID	PASS
659_bTo_pair	KIF1BP	10	68988721	69043544	FALSE	651	-0.523280686314431	28	68722553	70760843	0.351300687168522	2	0	0.351300687168522	2	0	2038290	2	27	11	0	FALSE	CNLOH	PASS
659_bTo_pair	KIF1C	17	4997948	5028401	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	25	0	FALSE	HETLOSS	PASS
659_bTo_pair	KIF20A	5	138178719	138187715	FALSE	336	-0.752536733071469	19	135941639	138575278	0.365165917639896	1	0	0.365165917639896	1	0	2633639	1	24	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	KIF20B	10	89701610	89774939	FALSE	661	-0.416223961063407	39	89433340	89714130	NA	2	NA	NA	2	NA	280790	NA	3	39	7	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	KIF21A	12	39293228	39443390	FALSE	761	-0.518834393047475	27	38323923	40473121	1	2	1	1	2	1	2149198	1	8	44	1	FALSE	DIPLOID	PASS
659_bTo_pair	KIF21B	1	200969390	201023700	FALSE	60	-0.443336911293225	30	196228264	201209660	1	2	1	1	2	1	4981396	1	29	40	6	FALSE	DIPLOID	PASS
659_bTo_pair	KIF22	16	29790719	29805385	FALSE	965	-0.735005669796309	19	28989573	29982749	0.365165917639896	1	0	0.365165917639896	1	0	993176	1	25	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	KIF23	15	69414246	69448427	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	25	0	FALSE	HETLOSS	PASS
659_bTo_pair	KIF24	9	34252381	34311371	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	22	4	FALSE	CNLOH	PASS
659_bTo_pair	KIF25	6	167996241	168045089	FALSE	449	-0.520973998932362	27	167374374	170584540	1	2	1	1	2	1	3210166	1	18	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	KIF26A	14	104138723	104180894	FALSE	883	-0.69016701050987	21	103712930	104759455	0.140309795179477	0	0	0.140309795179477	0	0	1046525	0	14	32	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	KIF26B	1	245154985	245709431	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	31	1	FALSE	DIPLOID	PASS
659_bTo_pair	KIF27	9	83836698	83921465	FALSE	598	-0.546497547865564	29	78236395	83956411	NA	2	NA	NA	2	NA	5720016	NA	14	24	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KIF2A	5	62306162	62537249	FALSE	323	-0.645106866010582	25	58495036	67196614	0.365165917639896	1	0	0.365165917639896	1	0	8701578	1	31	55	6	FALSE	HETLOSS	PASS
659_bTo_pair	KIF2B	17	53822901	53825213	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KIF2C	1	44739818	44767767	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	KIF3A	5	132692628	132737638	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	KIF3B	20	32277664	32335011	FALSE	1201	-0.583226555890856	26	31757461	32331296	NA	2	NA	NA	2	NA	573835	NA	13	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KIF3C	2	25926596	25982749	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	KIF4A	23	70290090	70420832	FALSE	1311	0.0481524733197309	56	68048478	70452009	0.365165917639896	4	NA	0.365165917639896	4	NA	2403531	NA	19	30	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	KIF4B	5	155013755	155018132	FALSE	351	-0.617975601907695	26	154002251	157057925	NA	2	NA	NA	2	NA	3055674	NA	15	15	4	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KIF5A	12	57549998	57586632	FALSE	782	-0.458497547164839	34	57472671	57623111	NA	2	NA	NA	2	NA	150440	NA	11	29	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KIF5B	10	32009010	32056431	FALSE	639	1.63119643529824	93	31908594	32056417	0.364342740527346	20	NA	0.364342740527346	20	NA	147823	NA	2	58	1	FALSE	AMP	PASS
659_bTo_pair	KIF5C	2	148875250	149026759	FALSE	149	-0.454179855872301	30	147845197	157628657	1	2	1	1	2	1	9783460	1	30	26	0	FALSE	DIPLOID	PASS
659_bTo_pair	KIF6	6	39329990	39725405	FALSE	397	-0.509151429367598	27	37213022	41687167	1	2	1	1	2	1	4474145	1	33	25	0	FALSE	DIPLOID	PASS
659_bTo_pair	KIF7	15	89608789	89655451	FALSE	925	-0.863518905667221	13	89317527	90079704	0.365165917639896	1	0	0.365165917639896	1	0	762177	1	14	39	0	FALSE	HETLOSS	PASS
659_bTo_pair	KIF9	3	47228026	47283451	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	24	0	FALSE	HETLOSS	PASS
659_bTo_pair	KIFAP3	1	169921326	170085208	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	KIFC1	6	33391536	33409924	FALSE	391	-0.499783837646083	34	33391964	35241176	NA	2	NA	NA	2	NA	1849212	NA	26	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KIFC2	8	144466043	144474202	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	17	2	FALSE	DIPLOID	PASS
659_bTo_pair	KIFC3	16	57758217	57863053	FALSE	971	-0.537344591536493	29	57069860	57923335	NA	2	NA	NA	2	NA	853475	NA	21	27	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KIN	10	7750962	7787981	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	13	3	FALSE	CNLOH	PASS
659_bTo_pair	KIR2DL1	19	54769811	54784322	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	KIR2DL3	19	54738515	54753052	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	KIR2DL4	19	54803535	54814517	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	10	7	FALSE	DIPLOID	PASS
659_bTo_pair	KIR3DL1	19	54816468	54830778	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	12	4	FALSE	DIPLOID	PASS
659_bTo_pair	KIR3DL2	19	54850443	54867207	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	12	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	KIR3DL3	19	54724479	54736536	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	KIRREL1	1	157993273	158100262	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	KIRREL2	19	35855861	35867109	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	16	1	FALSE	HETLOSS	PASS
659_bTo_pair	KIRREL3	11	126423359	127003460	FALSE	732	-0.497254377564454	34	125672754	127000522	NA	2	NA	NA	2	NA	1327768	NA	19	19	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KISS1	1	204190341	204196486	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	KISS1R	19	917287	921015	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	8	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	KIT	4	54657918	54740715	FALSE	284	0.641400756507207	71	54252534	55125526	0.364342740527346	8	NA	0.364342740527346	8	NA	872992	NA	4	46	3	FALSE	INDETERMINATE	PASS
659_bTo_pair	KITLG	12	88492793	88580851	FALSE	794	-0.258431968401282	46	85301316	91178343	0.298322295679939	3	NA	0.298322295679939	3	NA	5877027	NA	19	9	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	KIZ	20	21125983	21246622	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	16	2	FALSE	DIPLOID	PASS
659_bTo_pair	KL	13	33016433	33066145	FALSE	830	-0.745621963362667	19	32401848	39788354	0.365165917639896	1	0	0.365165917639896	1	0	7386506	1	30	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	KLB	4	39406853	39451536	FALSE	280	-0.191477557443324	47	38829296	41740154	0.365165917639896	3	1	0.365165917639896	3	1	2910858	2	22	15	1	FALSE	GAIN	PASS
659_bTo_pair	KLC1	14	103561896	103714249	FALSE	881	-0.341614784223633	43	103502897	103687181	0.192136715055622	3	NA	0.192136715055622	3	NA	184284	NA	7	43	10	TRUE	GAIN (many states)	PASS
659_bTo_pair	KLC2	11	66257294	66267860	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	17	0	FALSE	GAIN	PASS
659_bTo_pair	KLC3	19	45333434	45351520	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	18	2	TRUE	HETLOSS	PASS
659_bTo_pair	KLC4	6	43040777	43075099	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	50	2	FALSE	DIPLOID	PASS
659_bTo_pair	KLF1	19	12884422	12887199	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	KLF10	8	102648779	102655902	FALSE	560	1.49944678487883	90	102252423	102652198	0.364342740527346	18	NA	0.364342740527346	18	NA	399775	NA	3	8	1	TRUE	AMP	PASS
659_bTo_pair	KLF11	2	10042849	10054836	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	KLF12	13	73686089	73995056	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	8	0	FALSE	CNLOH	PASS
659_bTo_pair	KLF13	15	31326855	31435665	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	KLF14	7	130731235	130734176	FALSE	495	0.710651497817957	74	130733123	131487632	0.364342740527346	9	NA	0.364342740527346	9	NA	754509	NA	2	4	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	KLF15	3	126342635	126357442	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	6	0	FALSE	GAIN	PASS
659_bTo_pair	KLF16	19	1852399	1863568	FALSE	1118	-0.58059819545476	23	1775405	2151345	0.186356639256811	1	0	0.186356639256811	1	0	375940	1	13	4	2	FALSE	HETLOSS	PASS
659_bTo_pair	KLF17	1	44118850	44135140	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	KLF18	1	44137821	44141631	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	12	5	FALSE	DIPLOID	PASS
659_bTo_pair	KLF2	19	16324817	16327874	TRUE	1153	2.82815972466357	118	16324973	16355807	0.364342740527346	50	NA	0.364342740527346	50	NA	30834	NA	2	8	0	FALSE	AMP	PASS
659_bTo_pair	KLF3	4	38664196	38701042	FALSE	279	0.578727770796427	69	38659289	38828915	0.364342740527346	8	NA	0.364342740527346	8	NA	169626	NA	4	32	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	KLF4	9	107484852	107490482	TRUE	611	2.0635661060683	105	107481088	107489815	0.364342740527346	28	NA	0.364342740527346	28	NA	8727	NA	1	17	1	FALSE	AMP	PASS
659_bTo_pair	KLF5	13	73054976	73077542	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	7	0	FALSE	CNLOH	PASS
659_bTo_pair	KLF6	10	3775996	3785281	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	6	0	FALSE	CNLOH	PASS
659_bTo_pair	KLF7	2	207074137	207167267	FALSE	168	-0.499602545595775	30	203936898	208231285	1	2	1	1	2	1	4294387	1	25	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	KLF8	23	56232421	56287889	FALSE	1303	0.0232492223836125	56	53426353	57488811	0.365165917639896	4	NA	0.365165917639896	4	NA	4062458	NA	32	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	KLF9	9	70384597	70414624	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	KLHDC1	14	49693105	49753152	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	KLHDC10	7	130070510	130135720	FALSE	494	-0.536776174448359	29	129225418	130685270	NA	2	NA	NA	2	NA	1459852	NA	17	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KLHDC2	14	49767608	49786385	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	KLHDC3	6	43014103	43021298	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	9	2	FALSE	DIPLOID	PASS
659_bTo_pair	KLHDC4	16	87696485	87765992	FALSE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	13	2	FALSE	HETLOSS	PASS
659_bTo_pair	KLHDC7A	1	18480982	18486126	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	KLHDC7B	22	50545891	50551023	FALSE	1272	-0.260847831900416	46	50286270	50731222	0.298322295679939	3	NA	0.298322295679939	3	NA	444952	NA	19	13	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	KLHDC8A	1	205336065	205357090	FALSE	66	-0.597189828646048	26	204618263	205619845	NA	2	NA	NA	2	NA	1001582	NA	13	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KLHDC8B	3	49171611	49176486	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	KLHDC9	1	161098361	161100346	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	KLHL1	13	69700594	70108493	FALSE	836	-0.444239733377228	32	50956423	72747004	0.365165917639896	2	0	0.365165917639896	2	0	21790581	2	40	15	1	FALSE	CNLOH	PASS
659_bTo_pair	KLHL10	17	41835685	41848384	FALSE	1036	-0.764029118419186	19	41624551	42193564	0.365165917639896	1	0	0.365165917639896	1	0	569013	1	25	11	2	FALSE	HETLOSS	PASS
659_bTo_pair	KLHL11	17	41853545	41865431	FALSE	1036	-0.764029118419186	19	41624551	42193564	0.365165917639896	1	0	0.365165917639896	1	0	569013	1	25	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	KLHL12	1	202891100	202928636	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	KLHL13	23	117897813	118117340	FALSE	1326	0.081501992784242	59	111246621	119452040	0.308533751035793	5	NA	0.308533751035793	5	NA	8205419	NA	28	16	0	FALSE	AMP (many states)	PASS
659_bTo_pair	KLHL14	18	32672671	32773062	FALSE	1093	1.40906960375963	88	32470395	32770537	0.364342740527346	17	NA	0.364342740527346	17	NA	300142	NA	2	11	1	FALSE	AMP	PASS
659_bTo_pair	KLHL15	23	23983720	24027186	FALSE	1279	0.732858679270306	74	23938620	24365274	0.364342740527346	9	NA	0.364342740527346	9	NA	426654	NA	4	8	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	KLHL17	1	960587	965715	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	14	4	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	KLHL18	3	47282917	47346816	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	KLHL2	4	165207618	165323156	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	16	2	FALSE	HETLOSS	PASS
659_bTo_pair	KLHL20	1	173714941	173786702	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	KLHL21	1	6590724	6614607	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	KLHL22	22	20441519	20495883	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	12	0	FALSE	CNLOH	PASS
659_bTo_pair	KLHL23	2	169694488	169776989	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	KLHL24	3	183635568	183684477	FALSE	258	2.09803564212699	105	183487639	183651202	0.364342740527346	29	NA	0.364342740527346	29	NA	163563	NA	2	10	0	TRUE	AMP	PASS
659_bTo_pair	KLHL25	15	85759323	85795030	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	KLHL26	19	18636965	18671714	FALSE	1159	-0.165917001507678	49	18177228	19138502	0.365165917639896	3	1	0.365165917639896	3	1	961274	2	36	10	2	FALSE	GAIN	PASS
659_bTo_pair	KLHL28	14	44924319	45042322	FALSE	858	-0.388807455224718	39	37680254	45134449	NA	2	NA	NA	2	NA	7454195	NA	16	29	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KLHL29	2	23385217	23708611	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KLHL3	5	137617500	137736090	FALSE	336	-0.752536733071469	19	135941639	138575278	0.365165917639896	1	0	0.365165917639896	1	0	2633639	1	24	15	2	FALSE	HETLOSS	PASS
659_bTo_pair	KLHL30	2	238138722	238152947	FALSE	190	-0.691419458816616	21	236392006	238848635	0.140309795179477	0	0	0.140309795179477	0	0	2456629	0	22	11	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	KLHL31	6	53647901	53665708	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	KLHL32	6	96924620	97140754	FALSE	411	-0.455063723695114	34	95586870	106069771	NA	2	NA	NA	2	NA	10482901	NA	27	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KLHL33	14	20425852	20436158	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	KLHL34	23	21654690	21658330	FALSE	1278	-0.021616497728569	55	20155391	23935235	0.328696605851359	4	NA	0.328696605851359	4	NA	3779844	NA	16	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	KLHL35	11	75422394	75430629	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	11	0	FALSE	GAIN	PASS
659_bTo_pair	KLHL36	16	84648525	84667686	FALSE	987	-0.578642888038652	23	81999201	85806436	0.186356639256811	1	0	0.186356639256811	1	0	3807235	1	31	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	KLHL38	8	123645527	123652950	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	8	1	FALSE	GAIN	PASS
659_bTo_pair	KLHL4	23	87517749	87670050	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	14	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	KLHL40	3	42685519	42692544	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	KLHL41	2	169509702	169526262	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	KLHL42	12	27780020	27803040	FALSE	759	-0.427669886187443	30	25503824	31088026	1	2	1	1	2	1	5584202	1	28	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	KLHL5	4	39045039	39126857	FALSE	280	-0.191477557443324	47	38829296	41740154	0.365165917639896	3	1	0.365165917639896	3	1	2910858	2	22	14	2	FALSE	GAIN	PASS
659_bTo_pair	KLHL6	3	183487531	183555689	FALSE	258	2.09803564212699	105	183487639	183651202	0.364342740527346	29	NA	0.364342740527346	29	NA	163563	NA	2	26	6	FALSE	AMP	PASS
659_bTo_pair	KLHL7	7	23105758	23177914	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	15	1	FALSE	GAIN	PASS
659_bTo_pair	KLHL8	4	87160103	87240314	FALSE	291	-0.458701040497953	34	83536708	87613131	NA	2	NA	NA	2	NA	4076423	NA	17	11	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KLHL9	9	21329671	21335380	FALSE	583	-0.387007513258167	39	20715331	21839114	NA	2	NA	NA	2	NA	1123783	NA	21	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KLK1	19	50819148	50823787	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	KLK10	19	51012739	51020175	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	KLK11	19	51022216	51028039	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	KLK12	19	51029092	51035230	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	KLK13	19	51056206	51065114	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	KLK14	19	51077495	51084245	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	KLK15	19	50825289	50837213	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	6	2	FALSE	HETLOSS	PASS
659_bTo_pair	KLK2	19	50861568	50880567	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	7	3	FALSE	HETLOSS	PASS
659_bTo_pair	KLK3	19	50854915	50860764	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	KLK4	19	50906352	50910738	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	KLK5	19	50943303	50953093	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	KLK6	19	50958631	50969673	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	KLK7	19	50976482	50984099	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	KLK8	19	50996007	51002711	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	KLK9	19	51003111	51009634	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	KLKB1	4	186208979	186258471	FALSE	305	-0.853036814117495	12	184629284	186555336	0.365165917639896	1	0	0.365165917639896	1	0	1926052	1	22	16	2	FALSE	HETLOSS	PASS
659_bTo_pair	KLLN	10	87859161	87863437	FALSE	656	-0.313191165123093	43	86936767	87862427	0.192136715055622	3	NA	0.192136715055622	3	NA	925660	NA	12	6	0	TRUE	GAIN (many states)	PASS
659_bTo_pair	KLRB1	12	9594551	9607886	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	KLRC1	12	10442264	10454685	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	6	3	FALSE	DIPLOID	PASS
659_bTo_pair	KLRC2	12	10426854	10442300	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	7	2	FALSE	DIPLOID	PASS
659_bTo_pair	KLRC3	12	10412312	10420595	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	KLRC4	12	10407382	10409757	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	4	2	FALSE	DIPLOID	PASS
659_bTo_pair	KLRC4-KLRK1	12	10372353	10410146	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	11	4	FALSE	DIPLOID	PASS
659_bTo_pair	KLRD1	12	10226058	10329600	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	KLRF1	12	9827481	9845007	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	KLRF2	12	9881489	9895833	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	KLRG1	12	8950044	9010760	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	6	2	FALSE	DIPLOID	PASS
659_bTo_pair	KLRG2	7	139452690	139483712	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	KLRK1	12	10372353	10391874	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	7	2	FALSE	DIPLOID	PASS
659_bTo_pair	KMO	1	241532134	241595642	FALSE	84	-0.392646983169906	39	241532515	243426393	NA	2	NA	NA	2	NA	1893878	NA	10	17	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KMT2A	11	118436464	118526832	TRUE	727	1.57274174855577	91	118431524	118526863	0.364342740527346	19	NA	0.364342740527346	19	NA	95339	NA	2	123	5	FALSE	AMP	PASS
659_bTo_pair	KMT2B	19	35718019	35738878	TRUE	1168	1.42277899639017	88	35715274	35739868	0.364342740527346	17	NA	0.364342740527346	17	NA	24594	NA	4	56	4	FALSE	AMP	PASS
659_bTo_pair	KMT2C	7	152134922	152436005	TRUE	507	2.22766722314743	109	152121623	152138952	0.364342740527346	32	NA	0.364342740527346	32	NA	17329	NA	2	137	9	TRUE	AMP	PASS
659_bTo_pair	KMT2D	12	49018975	49059774	TRUE	769	1.6411052884547	96	49019004	49060579	0.364342740527346	20	NA	0.364342740527346	20	NA	41575	NA	1	106	1	FALSE	AMP	PASS
659_bTo_pair	KMT2E	7	105014179	105114361	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	38	0	FALSE	DIPLOID	PASS
659_bTo_pair	KMT5A	12	123383773	123409358	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	KMT5B	11	68154863	68213828	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	15	0	FALSE	GAIN	PASS
659_bTo_pair	KMT5C	19	55339853	55348120	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	9	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	KNCN	1	46545644	46551527	FALSE	16	-0.485631979032023	30	46175602	48453048	1	2	1	1	2	1	2277446	1	32	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	KNDC1	10	133160447	133226412	FALSE	676	-0.612597388333807	25	132187132	133626712	0.365165917639896	1	0	0.365165917639896	1	0	1439580	1	27	40	1	FALSE	HETLOSS	PASS
659_bTo_pair	KNG1	3	186717276	186744410	FALSE	263	-0.396590537714608	39	186161612	186743777	NA	2	NA	NA	2	NA	582165	NA	9	14	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KNL1	15	40594020	40664342	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	43	0	FALSE	HETLOSS	PASS
659_bTo_pair	KNOP1	16	19701934	19718235	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	KNSTRN	15	40382721	40394246	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	KNTC1	12	122527246	122626396	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	63	0	FALSE	DIPLOID	PASS
659_bTo_pair	KPNA1	3	122421949	122514945	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	13	0	FALSE	GAIN	PASS
659_bTo_pair	KPNA2	17	68035519	68046842	FALSE	1070	-0.476939588153593	30	65635933	68457397	1	2	1	1	2	1	2821464	1	18	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	KPNA3	13	49699307	49792921	FALSE	835	-0.766581964775609	19	48490223	50953919	0.365165917639896	1	0	0.365165917639896	1	0	2463696	1	18	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	KPNA4	3	160494995	160565588	FALSE	250	-0.231905273142314	46	156829339	161250770	0.298322295679939	3	NA	0.298322295679939	3	NA	4421431	NA	26	16	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	KPNA5	6	116681187	116741866	FALSE	417	-0.520434008170675	29	114058103	117272433	NA	2	NA	NA	2	NA	3214330	NA	20	14	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KPNA6	1	32108038	32176568	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	KPNA7	7	99173574	99207506	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	12	2	FALSE	HETLOSS	PASS
659_bTo_pair	KPNB1	17	47649476	47685505	FALSE	1046	-0.746772159255206	19	45395806	47696360	0.365165917639896	1	0	0.365165917639896	1	0	2300554	1	26	22	3	FALSE	HETLOSS	PASS
659_bTo_pair	KPRP	1	152759561	152762052	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	KPTN	19	47475144	47484268	FALSE	1187	-0.64296711085636	26	47021158	48297657	NA	2	NA	NA	2	NA	1276499	NA	31	13	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KRAS	12	25204789	25250936	FALSE	758	1.97385889137194	102	25200305	25255980	0.364342740527346	26	NA	0.364342740527346	26	NA	55675	NA	2	43	0	FALSE	AMP	PASS
659_bTo_pair	KRBA1	7	149714781	149734575	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	20	1	FALSE	HETLOSS	PASS
659_bTo_pair	KRBA2	17	8356902	8376711	FALSE	1005	-0.533729334585785	29	8204923	8370291	NA	2	NA	NA	2	NA	165368	NA	9	7	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	KRBOX1	3	42809483	42942792	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	24	0	FALSE	HETLOSS	PASS
659_bTo_pair	KRBOX4	23	46446857	46497422	FALSE	1292	0.0982305969328026	59	45151653	47144467	0.308533751035793	5	NA	0.308533751035793	5	NA	1992814	NA	9	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	KRCC1	2	88027205	88055729	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	KREMEN1	22	29073078	29168333	FALSE	1257	-0.782237459575943	16	29058831	29265673	0.365165917639896	1	0	0.365165917639896	1	0	206842	1	4	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	KREMEN2	16	2963944	2968383	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	KRI1	19	10553078	10566037	FALSE	1141	-0.578703281933348	26	10514217	10929669	NA	2	NA	NA	2	NA	415452	NA	14	18	5	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KRIT1	7	92198969	92246166	FALSE	479	-0.448308050861149	30	87602941	92590330	1	2	1	1	2	1	4987389	1	30	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRR1	12	75490861	75511636	FALSE	792	-0.349776929755415	43	71610399	76348235	0.192136715055622	3	NA	0.192136715055622	3	NA	4737836	NA	18	13	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	KRT1	12	52674736	52680407	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	KRT10	17	40818117	40822595	FALSE	1034	-0.883800586203816	13	40656673	40979037	0.365165917639896	1	0	0.365165917639896	1	0	322364	1	14	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	KRT12	17	40860943	40867224	FALSE	1034	-0.883800586203816	13	40656673	40979037	0.365165917639896	1	0	0.365165917639896	1	0	322364	1	14	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	KRT13	17	41500981	41505705	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRT14	17	41582279	41586921	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRT15	17	41513743	41522529	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRT16	17	41609778	41615899	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRT17	17	41619441	41624842	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	10	0	TRUE	DIPLOID	PASS
659_bTo_pair	KRT18	12	52948871	52952901	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	KRT19	17	41523617	41528308	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRT2	12	52644558	52652164	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	KRT20	17	40875941	40885227	FALSE	1034	-0.883800586203816	13	40656673	40979037	0.365165917639896	1	0	0.365165917639896	1	0	322364	1	14	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	KRT222	17	40654665	40665181	FALSE	1033	1.57926160783251	91	40624994	40656553	0.364342740527346	19	NA	0.364342740527346	19	NA	31559	NA	3	7	0	TRUE	AMP	PASS
659_bTo_pair	KRT23	17	40922696	40937634	FALSE	1034	-0.883800586203816	13	40656673	40979037	0.365165917639896	1	0	0.365165917639896	1	0	322364	1	14	9	2	FALSE	HETLOSS	PASS
659_bTo_pair	KRT24	17	40697991	40703750	FALSE	1034	-0.883800586203816	13	40656673	40979037	0.365165917639896	1	0	0.365165917639896	1	0	322364	1	14	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	KRT25	17	40748021	40755332	FALSE	1034	-0.883800586203816	13	40656673	40979037	0.365165917639896	1	0	0.365165917639896	1	0	322364	1	14	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	KRT26	17	40766238	40772162	FALSE	1034	-0.883800586203816	13	40656673	40979037	0.365165917639896	1	0	0.365165917639896	1	0	322364	1	14	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	KRT27	17	40776808	40782534	FALSE	1034	-0.883800586203816	13	40656673	40979037	0.365165917639896	1	0	0.365165917639896	1	0	322364	1	14	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	KRT28	17	40792203	40799959	FALSE	1034	-0.883800586203816	13	40656673	40979037	0.365165917639896	1	0	0.365165917639896	1	0	322364	1	14	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	KRT3	12	52789685	52796117	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	12	3	FALSE	DIPLOID	PASS
659_bTo_pair	KRT31	17	41393724	41397592	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRT32	17	41459811	41467429	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	8	5	FALSE	DIPLOID	PASS
659_bTo_pair	KRT33A	17	41346092	41350812	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRT33B	17	41363494	41369800	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRT34	17	41377650	41382403	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRT35	17	41476689	41481140	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	9	3	FALSE	DIPLOID	PASS
659_bTo_pair	KRT36	17	41486136	41492546	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	KRT37	17	41420753	41424523	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	KRT38	17	41436446	41440921	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	KRT39	17	40958417	40966892	FALSE	1034	-0.883800586203816	13	40656673	40979037	0.365165917639896	1	0	0.365165917639896	1	0	322364	1	14	8	2	FALSE	HETLOSS	PASS
659_bTo_pair	KRT4	12	52806549	52814551	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRT40	17	40977716	40987135	FALSE	1034	-0.883800586203816	13	40656673	40979037	0.365165917639896	1	0	0.365165917639896	1	0	322364	1	14	9	7	TRUE	HETLOSS	PASS
659_bTo_pair	KRT5	12	52514575	52520687	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRT6A	12	52487174	52493257	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	KRT6B	12	52446651	52452126	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	12	4	FALSE	DIPLOID	PASS
659_bTo_pair	KRT6C	12	52468516	52473785	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	KRT7	12	52232520	52252186	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	KRT71	12	52543909	52553147	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	12	3	FALSE	DIPLOID	PASS
659_bTo_pair	KRT72	12	52585589	52601538	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	11	4	FALSE	DIPLOID	PASS
659_bTo_pair	KRT73	12	52607570	52618559	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	KRT74	12	52565782	52573825	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	12	3	FALSE	DIPLOID	PASS
659_bTo_pair	KRT75	12	52424070	52434525	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRT76	12	52768155	52777345	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	12	3	FALSE	DIPLOID	PASS
659_bTo_pair	KRT77	12	52689626	52703463	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	KRT78	12	52837804	52849092	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRT79	12	52821410	52834295	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	KRT8	12	52897187	52949954	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	13	2	FALSE	DIPLOID	PASS
659_bTo_pair	KRT80	12	52168996	52192000	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	KRT81	12	52285913	52291534	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	10	2	FALSE	DIPLOID	PASS
659_bTo_pair	KRT82	12	52393931	52406355	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRT83	12	52314301	52321398	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	11	3	FALSE	DIPLOID	PASS
659_bTo_pair	KRT84	12	52377812	52385652	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRT85	12	52360006	52367481	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	KRT86	12	52249300	52309163	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	19	2	FALSE	DIPLOID	PASS
659_bTo_pair	KRT9	17	41565841	41572058	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP1-1	17	41040559	41041461	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP1-3	17	41033884	41034855	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	2	1	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP1-4	17	41029697	41030104	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	2	1	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP1-5	17	41026026	41027202	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP10-1	21	44538981	44540195	FALSE	1236	-0.500794339727727	30	44229616	44592452	1	2	1	1	2	1	362836	1	14	4	3	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP10-10	21	44637356	44638455	FALSE	1237	-0.454133559576209	34	44600832	44873643	NA	2	NA	NA	2	NA	272811	NA	15	3	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KRTAP10-11	21	44646414	44647650	FALSE	1237	-0.454133559576209	34	44600832	44873643	NA	2	NA	NA	2	NA	272811	NA	15	4	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KRTAP10-12	21	44697172	44698044	FALSE	1237	-0.454133559576209	34	44600832	44873643	NA	2	NA	NA	2	NA	272811	NA	15	3	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KRTAP10-2	21	44550357	44551505	FALSE	1236	-0.500794339727727	30	44229616	44592452	1	2	1	1	2	1	362836	1	14	4	3	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP10-3	21	44557790	44558760	FALSE	1236	-0.500794339727727	30	44229616	44592452	1	2	1	1	2	1	362836	1	14	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP10-4	21	44573724	44638284	FALSE	1236	-0.500794339727727	30	44229616	44592452	1	2	1	1	2	1	362836	1	14	30	11	TRUE	DIPLOID	PASS
659_bTo_pair	KRTAP10-5	21	44579455	44580604	FALSE	1236	-0.500794339727727	30	44229616	44592452	1	2	1	1	2	1	362836	1	14	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP10-6	21	44591268	44592505	FALSE	1236	-0.500794339727727	30	44229616	44592452	1	2	1	1	2	1	362836	1	14	5	2	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP10-7	21	44600597	44602174	FALSE	1237	-0.454133559576209	34	44600832	44873643	NA	2	NA	NA	2	NA	272811	NA	15	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KRTAP10-8	21	44612079	44612954	FALSE	1237	-0.454133559576209	34	44600832	44873643	NA	2	NA	NA	2	NA	272811	NA	15	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KRTAP10-9	21	44627123	44628293	FALSE	1237	-0.454133559576209	34	44600832	44873643	NA	2	NA	NA	2	NA	272811	NA	15	4	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KRTAP11-1	21	30880644	30881555	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP12-1	21	44681576	44682163	FALSE	1237	-0.454133559576209	34	44600832	44873643	NA	2	NA	NA	2	NA	272811	NA	15	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KRTAP12-2	21	44666189	44666927	FALSE	1237	-0.454133559576209	34	44600832	44873643	NA	2	NA	NA	2	NA	272811	NA	15	2	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KRTAP12-3	21	44657932	44658341	FALSE	1237	-0.454133559576209	34	44600832	44873643	NA	2	NA	NA	2	NA	272811	NA	15	2	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KRTAP12-4	21	44654213	44654659	FALSE	1237	-0.454133559576209	34	44600832	44873643	NA	2	NA	NA	2	NA	272811	NA	15	2	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	KRTAP13-1	21	30396074	30396822	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP13-2	21	30371391	30372257	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP13-3	21	30425265	30425968	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP13-4	21	30430230	30431026	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP15-1	21	30440275	30440945	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP16-1	17	41307700	41309253	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP17-1	17	41314917	41315695	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP19-1	21	30479699	30480344	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP19-2	21	30487057	30487436	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP19-3	21	30491464	30491985	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP19-4	21	30496824	30497133	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP19-5	21	30501657	30502117	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP19-6	21	30541535	30541864	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP19-7	21	30560875	30561314	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP19-8	21	31038159	31038476	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP2-1	17	41046541	41047316	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	2	1	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP2-2	17	41054498	41055230	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	2	1	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP2-3	17	41059240	41060114	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	2	1	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP2-4	17	41065116	41065879	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP20-1	21	30616425	30616699	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP20-2	21	30635236	30635619	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP20-4	21	30620627	30620850	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP21-1	21	30754830	30755428	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP21-2	21	30746794	30747233	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP21-3	21	30718525	30718777	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP22-1	21	30601087	30601382	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP22-2	21	30590105	30590397	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP23-1	21	30348399	30348609	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP24-1	21	30281309	30282958	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP25-1	21	30289145	30289514	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP26-1	21	30319124	30320316	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP27-1	21	30337013	30337694	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP29-1	17	41301826	41302851	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP3-1	17	41008521	41019324	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP3-2	17	40999193	40999894	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	2	2	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP3-3	17	40993430	40994133	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	2	1	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP4-1	17	41184102	41185342	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	2	1	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP4-11	17	41117181	41118360	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	3	3	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP4-12	17	41123091	41124167	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP4-2	17	41177446	41178208	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP4-3	17	41167231	41168194	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP4-4	17	41159651	41160731	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	2	1	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP4-5	17	41148924	41149802	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP4-6	17	41139433	41140487	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP4-7	17	41084150	41085141	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	2	1	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP4-8	17	41096981	41098141	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	3	2	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP4-9	17	41105332	41106488	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	3	2	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP5-1	11	1584342	1585283	FALSE	679	-0.702000712925199	21	1256247	1938477	0.140309795179477	0	0	0.140309795179477	0	0	682230	0	19	4	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	KRTAP5-10	11	71565563	71566738	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	3	2	FALSE	GAIN	PASS
659_bTo_pair	KRTAP5-11	11	71579714	71603353	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	2	0	FALSE	GAIN	PASS
659_bTo_pair	KRTAP5-2	11	1597177	1598294	FALSE	679	-0.702000712925199	21	1256247	1938477	0.140309795179477	0	0	0.140309795179477	0	0	682230	0	19	3	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	KRTAP5-3	11	1607565	1608463	FALSE	679	-0.702000712925199	21	1256247	1938477	0.140309795179477	0	0	0.140309795179477	0	0	682230	0	19	3	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	KRTAP5-4	11	1620958	1622138	FALSE	679	-0.702000712925199	21	1256247	1938477	0.140309795179477	0	0	0.140309795179477	0	0	682230	0	19	3	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	KRTAP5-5	11	1629775	1630707	FALSE	679	-0.702000712925199	21	1256247	1938477	0.140309795179477	0	0	0.140309795179477	0	0	682230	0	19	3	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	KRTAP5-6	11	1697195	1697755	FALSE	679	-0.702000712925199	21	1256247	1938477	0.140309795179477	0	0	0.140309795179477	0	0	682230	0	19	2	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	KRTAP5-7	11	71527267	71528674	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	2	1	FALSE	GAIN	PASS
659_bTo_pair	KRTAP5-8	11	71538025	71539207	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	3	1	FALSE	GAIN	PASS
659_bTo_pair	KRTAP5-9	11	71548418	71549553	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	3	0	FALSE	GAIN	PASS
659_bTo_pair	KRTAP6-1	21	30613431	30613930	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP6-2	21	30598590	30598902	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP6-3	21	30592440	30593075	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP7-1	21	30829039	30829759	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	2	1	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP8-1	21	30812697	30813252	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP9-1	17	41189887	41190639	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP9-2	17	41226648	41227652	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP9-3	17	41232463	41233454	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP9-4	17	41249687	41250653	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	2	1	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP9-6	17	41265339	41266641	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP9-7	17	41275659	41276697	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP9-8	17	41238045	41239004	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	2	1	FALSE	DIPLOID	PASS
659_bTo_pair	KRTAP9-9	17	41255384	41256364	FALSE	1035	-0.458901334335357	30	40980852	41624328	1	2	1	1	2	1	643476	1	51	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTCAP2	1	155169408	155173475	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTCAP3	2	27442366	27446481	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	KRTDAP	19	35487324	35495558	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	KSR1	17	27456470	27626438	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	KSR2	12	117453012	117968983	FALSE	808	-0.531025796359709	27	115966146	120090026	1	2	1	1	2	1	4123880	1	23	23	1	FALSE	DIPLOID	PASS
659_bTo_pair	KTI12	1	52032103	52033816	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	KTN1	14	55559072	55701526	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	45	3	FALSE	DIPLOID	PASS
659_bTo_pair	KXD1	19	18557762	18569387	FALSE	1159	-0.165917001507678	49	18177228	19138502	0.365165917639896	3	1	0.365165917639896	3	1	961274	2	36	5	1	FALSE	GAIN	PASS
659_bTo_pair	KY	3	134603138	134651636	FALSE	242	-0.32037413513609	40	130560427	134790274	0.308149309490068	3	1	0.308149309490068	3	1	4229847	2	29	15	0	FALSE	GAIN	PASS
659_bTo_pair	KYAT1	9	128832942	128882494	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	KYAT3	1	88935773	88992953	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	18	1	FALSE	DIPLOID	PASS
659_bTo_pair	KYNU	2	142877498	143055832	FALSE	147	-0.57792076882865	26	142885531	144208666	NA	2	NA	NA	2	NA	1323135	NA	3	14	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	L1CAM	23	153861514	153886174	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	29	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	L1TD1	1	62194831	62212328	FALSE	21	-0.414935064922519	39	59321678	64830856	NA	2	NA	NA	2	NA	5509178	NA	22	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	L2HGDH	14	50237563	50312548	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	L34079.1	19	43554692	43593036	FALSE	1180	1.26430641063836	86	43543393	43575522	0.364342740527346	15	NA	0.364342740527346	15	NA	32129	NA	2	12	0	TRUE	AMP	PASS
659_bTo_pair	L3HYPDH	14	59460363	59484430	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	L3MBTL1	20	43489442	43550950	FALSE	1209	0.298091148204376	63	42081860	43513601	0.364342740527346	6	NA	0.364342740527346	6	NA	1431741	NA	3	23	0	TRUE	AMP (many states)	PASS
659_bTo_pair	L3MBTL2	22	41205205	41231271	FALSE	1269	-0.443951758803067	34	41205309	42514754	NA	2	NA	NA	2	NA	1309445	NA	31	20	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	L3MBTL3	6	130013699	130141451	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	21	1	FALSE	DIPLOID	PASS
659_bTo_pair	L3MBTL4	18	5954706	6415237	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	18	3	FALSE	GAIN	PASS
659_bTo_pair	LACC1	13	43879284	43893932	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	LACRT	12	54630811	54634895	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	LACTB	15	63121800	63142061	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	LACTB2	8	70635318	70669174	FALSE	553	-0.248188717260806	46	68331252	73878866	0.298322295679939	3	NA	0.298322295679939	3	NA	5547614	NA	20	7	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	LACTBL1	1	22953043	22965338	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	LAD1	1	201373244	201399915	FALSE	61	-0.50531963543648	34	201209721	201898337	NA	2	NA	NA	2	NA	688616	NA	11	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LAG3	12	6772512	6778455	FALSE	743	-0.145896859645485	51	6620180	6938488	0.365165917639896	3	NA	0.365165917639896	3	NA	318308	NA	20	12	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	LAGE3	23	154477769	154479257	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	4	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	LAIR1	19	54351384	54370558	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	10	2	FALSE	DIPLOID	PASS
659_bTo_pair	LAIR2	19	54497879	54510687	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	LALBA	12	48567684	48570066	FALSE	768	-0.491963868457131	34	48045387	49018767	NA	2	NA	NA	2	NA	973380	NA	28	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LAMA1	18	6941744	7117814	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	66	10	FALSE	GAIN	PASS
659_bTo_pair	LAMA2	6	128883141	129516569	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	66	1	FALSE	DIPLOID	PASS
659_bTo_pair	LAMA3	18	23689443	23956222	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	80	0	FALSE	GAIN	PASS
659_bTo_pair	LAMA4	6	112108760	112254939	FALSE	415	-0.653130566834058	22	112072832	113860548	0.291335969972972	1	0	0.291335969972972	1	0	1787716	1	6	39	1	FALSE	HETLOSS	PASS
659_bTo_pair	LAMA5	20	62307955	62367312	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	87	1	FALSE	DIPLOID	PASS
659_bTo_pair	LAMB1	7	107923799	108003255	FALSE	488	-0.464127371400283	34	107070260	116559206	NA	2	NA	NA	2	NA	9488946	NA	33	37	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LAMB2	3	49121114	49133118	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	34	0	FALSE	HETLOSS	PASS
659_bTo_pair	LAMB3	1	209614870	209652466	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	26	5	FALSE	DIPLOID	PASS
659_bTo_pair	LAMB4	7	108023548	108130356	FALSE	488	-0.464127371400283	34	107070260	116559206	NA	2	NA	NA	2	NA	9488946	NA	33	37	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LAMC1	1	183023460	183145592	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	31	1	FALSE	DIPLOID	PASS
659_bTo_pair	LAMC2	1	183186238	183244900	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	27	7	FALSE	DIPLOID	PASS
659_bTo_pair	LAMC3	9	131009082	131094473	FALSE	623	-1.10575778455414	8	130893790	131117796	0.342391532111247	0	0	0.342391532111247	0	0	224006	0	4	36	0	FALSE	HOMDEL	PASS
659_bTo_pair	LAMP1	13	113297241	113323672	FALSE	845	2.15805867245839	107	113297383	113324449	0.364342740527346	30	NA	0.364342740527346	30	NA	27066	NA	2	15	0	FALSE	AMP	PASS
659_bTo_pair	LAMP2	23	120427827	120469365	FALSE	1328	0.070674287613007	59	119603543	121049335	0.308533751035793	5	NA	0.308533751035793	5	NA	1445792	NA	34	13	0	FALSE	AMP (many states)	PASS
659_bTo_pair	LAMP3	3	183122213	183163839	FALSE	257	-0.467752053645755	34	183015432	183427906	NA	2	NA	NA	2	NA	412474	NA	4	8	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LAMP5	20	9514358	9530524	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	LAMTOR1	11	72085895	72103387	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	11	2	FALSE	GAIN	PASS
659_bTo_pair	LAMTOR2	1	156054752	156058510	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	LAMTOR3	4	99878336	99894490	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	LAMTOR4	7	100148907	100155944	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	LAMTOR5	1	110401249	110407942	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	LANCL1	2	210431249	210477652	FALSE	171	-0.69211072472077	22	209829280	210677970	0.291335969972972	1	0	0.291335969972972	1	0	848690	1	7	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	LANCL2	7	55365448	55433742	FALSE	469	0.506065915308728	68	55366244	55473063	0.364342740527346	7	NA	0.364342740527346	7	NA	106819	NA	2	10	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	LANCL3	23	37571569	37684463	FALSE	1285	0.80616134695852	75	36379429	37572383	0.364342740527346	10	NA	0.364342740527346	10	NA	1192954	NA	5	8	0	TRUE	AMP	PASS
659_bTo_pair	LAP3	4	17577192	17607972	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	13	0	FALSE	GAIN	PASS
659_bTo_pair	LAPTM4A	2	20032650	20052028	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LAPTM4B	8	97775057	97853013	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	8	2	FALSE	GAIN	PASS
659_bTo_pair	LAPTM5	1	30732469	30757820	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	LARGE1	22	33162226	33922841	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	16	0	FALSE	CNLOH	PASS
659_bTo_pair	LARGE2	11	45921621	45929096	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	LARP1	5	154712902	154817607	FALSE	351	-0.617975601907695	26	154002251	157057925	NA	2	NA	NA	2	NA	3055674	NA	15	20	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LARP1B	4	128061268	128222931	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	LARP4	12	50392383	50480004	FALSE	772	-0.61197679162419	26	50109466	51920864	NA	2	NA	NA	2	NA	1811398	NA	27	20	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LARP4B	10	806914	931705	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	18	0	FALSE	CNLOH	PASS
659_bTo_pair	LARP6	15	70829130	70854159	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	LARP7	4	112636964	112657592	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	LARS	5	146113038	146182660	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	31	0	FALSE	HETLOSS	PASS
659_bTo_pair	LARS2	3	45388506	45549421	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	LAS1L	23	65512582	65534775	FALSE	1307	-0.0742378241560309	55	64268602	66615968	0.328696605851359	4	NA	0.328696605851359	4	NA	2347366	NA	8	18	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	LASP1	17	38869859	38921770	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	LAT	16	28984826	28990783	FALSE	964	-0.363781394946907	39	28951039	28986896	NA	2	NA	NA	2	NA	35857	NA	3	10	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	LAT2	7	74199652	74229834	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	LATS1	6	149658153	149718256	TRUE	432	1.4235297149657	88	149658280	149727002	0.364342740527346	17	NA	0.364342740527346	17	NA	68722	NA	2	38	1	FALSE	AMP	PASS
659_bTo_pair	LATS2	13	20973032	21061547	TRUE	820	1.55574896614582	91	20973065	21146817	0.364342740527346	19	NA	0.364342740527346	19	NA	173752	NA	2	32	4	FALSE	AMP	PASS
659_bTo_pair	LAX1	1	203765176	203776233	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	LAYN	11	111540280	111561745	FALSE	723	-0.542672588801529	29	108383083	111912852	NA	2	NA	NA	2	NA	3529769	NA	24	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LBH	2	30231369	30323730	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	LBHD1	11	62662817	62672255	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	14	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	LBHD2	14	103084210	103090027	FALSE	880	-0.612786833130899	26	102922742	103500099	NA	2	NA	NA	2	NA	577357	NA	7	3	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LBP	20	38346356	38377023	FALSE	1205	-0.619744376635615	23	37518926	41023791	0.186356639256811	1	0	0.186356639256811	1	0	3504865	1	19	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	LBR	1	225401502	225428925	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	LBX1	10	101226195	101229794	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	5	0	FALSE	CNLOH	PASS
659_bTo_pair	LBX2	2	74497517	74503316	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LCA5	6	79484991	79537458	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	LCA5L	21	39405844	39445805	FALSE	1230	-0.572411047461507	26	38805300	41452836	NA	2	NA	NA	2	NA	2647536	NA	17	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LCAT	16	67939750	67944131	FALSE	979	-0.429457644119204	34	67645299	68698317	NA	2	NA	NA	2	NA	1053018	NA	33	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LCE1A	1	152827473	152827894	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	LCE1B	1	152811971	152813109	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	LCE1C	1	152804835	152806628	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	2	1	FALSE	DIPLOID	PASS
659_bTo_pair	LCE1D	1	152796751	152798181	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	2	2	FALSE	DIPLOID	PASS
659_bTo_pair	LCE1E	1	152786214	152788426	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	LCE1F	1	152776372	152776728	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	LCE2A	1	152698364	152699442	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	LCE2B	1	152686123	152687401	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	LCE2C	1	152675295	152676574	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	LCE2D	1	152663396	152664659	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	LCE3A	1	152622834	152623103	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	LCE3D	1	152579381	152580504	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	LCE3E	1	152565654	152566772	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	LCE4A	1	152708160	152709491	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	2	1	FALSE	DIPLOID	PASS
659_bTo_pair	LCE5A	1	152510844	152512177	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	LCE6A	1	152842868	152843983	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	LCK	1	32251239	32286165	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	LCLAT1	2	30447226	30644225	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	LCMT1	16	25111729	25178231	FALSE	960	-0.449512584299377	34	23658521	27234165	NA	2	NA	NA	2	NA	3575644	NA	16	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LCMT2	15	43323649	43330605	FALSE	900	-0.777056562410308	17	42718512	43401817	0.365165917639896	1	0	0.365165917639896	1	0	683305	1	13	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	LCN1	9	135521438	135526532	FALSE	629	-0.955558414525678	9	134750808	136485014	0.291955377254426	0	0	0.291955377254426	0	0	1734206	0	30	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	LCN10	9	136738167	136743356	FALSE	631	-1.04738377038343	8	136673897	136866235	0.342391532111247	0	0	0.342391532111247	0	0	192338	0	15	6	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	LCN12	9	136949551	136955497	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	LCN15	9	136759634	136766255	FALSE	631	-1.04738377038343	8	136673897	136866235	0.342391532111247	0	0	0.342391532111247	0	0	192338	0	15	6	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	LCN2	9	128149071	128153455	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	LCN6	9	136744011	136748528	FALSE	631	-1.04738377038343	8	136673897	136866235	0.342391532111247	0	0	0.342391532111247	0	0	192338	0	15	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	LCN8	9	136754386	136758543	FALSE	631	-1.04738377038343	8	136673897	136866235	0.342391532111247	0	0	0.342391532111247	0	0	192338	0	15	6	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	LCN9	9	135663322	135666422	FALSE	629	-0.955558414525678	9	134750808	136485014	0.291955377254426	0	0	0.291955377254426	0	0	1734206	0	30	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	LCNL1	9	136981904	136986410	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	LCOR	10	96832282	96995959	FALSE	663	-0.556688707084635	24	94775074	96952170	0.359751661895656	2	0	0.359751661895656	2	0	2177096	2	21	26	3	TRUE	CNLOH	PASS
659_bTo_pair	LCORL	4	17841199	18021876	FALSE	277	0.271123815908725	63	17633730	20704492	0.364342740527346	6	NA	0.364342740527346	6	NA	3070762	NA	7	15	1	FALSE	AMP (many states)	PASS
659_bTo_pair	LCP1	13	46125920	46211871	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	LCP2	5	170246237	170298227	FALSE	356	-0.773912908266316	17	162095550	171298806	0.365165917639896	1	0	0.365165917639896	1	0	9203256	1	21	21	1	FALSE	HETLOSS	PASS
659_bTo_pair	LCT	2	135787840	135837180	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	32	0	FALSE	DIPLOID	PASS
659_bTo_pair	LCTL	15	66547179	66565979	FALSE	910	-0.956752978196304	11	66494510	66716498	0.289956079954009	0	0	0.289956079954009	0	0	221988	0	5	13	0	FALSE	HOMDEL	PASS
659_bTo_pair	LDAH	2	20684014	20823130	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LDB1	10	102107560	102120453	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	11	0	FALSE	CNLOH	PASS
659_bTo_pair	LDB2	4	16501541	16898809	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	11	1	FALSE	GAIN	PASS
659_bTo_pair	LDB3	10	86668449	86736068	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	18	1	TRUE	CNLOH	PASS
659_bTo_pair	LDHA	11	18394388	18408425	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	LDHAL6A	11	18455824	18479600	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	LDHAL6B	15	59206823	59208515	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	5	2	FALSE	HETLOSS	PASS
659_bTo_pair	LDHB	12	21635342	21757857	FALSE	757	-0.490002350483383	34	21512373	25195063	NA	2	NA	NA	2	NA	3682690	NA	15	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LDHC	11	18412307	18452058	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	LDHD	16	75111860	75116771	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	LDLR	19	11089362	11133816	FALSE	1143	-0.599591757528625	23	11089545	11375998	0.186356639256811	1	0	0.186356639256811	1	0	286453	1	11	20	5	FALSE	HETLOSS	PASS
659_bTo_pair	LDLRAD1	1	54007299	54018186	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	LDLRAD2	1	21812265	21825221	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	LDLRAD3	11	35943981	36232136	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	LDLRAD4	18	13217498	13652755	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	9	0	FALSE	GAIN	PASS
659_bTo_pair	LDLRAP1	1	25543580	25568886	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	LDOC1	23	141175745	141177125	FALSE	1338	0.767200084690243	74	139931991	141176986	0.364342740527346	9	NA	0.364342740527346	9	NA	1244995	NA	6	2	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	LEAP2	5	132872322	132875046	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	LECT2	5	135922279	135955034	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	11	2	TRUE	HETLOSS	PASS
659_bTo_pair	LEF1	4	108047545	108168956	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	LEFTY1	1	225886282	225911382	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	7	3	FALSE	DIPLOID	PASS
659_bTo_pair	LEFTY2	1	225936598	225941489	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	LEKR1	3	156825481	157046129	FALSE	250	-0.231905273142314	46	156829339	161250770	0.298322295679939	3	NA	0.298322295679939	3	NA	4421431	NA	26	15	3	FALSE	GAIN (many states)	PASS
659_bTo_pair	LELP1	1	153203443	153205120	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	LEMD1	1	205381378	205457091	FALSE	66	-0.597189828646048	26	204618263	205619845	NA	2	NA	NA	2	NA	1001582	NA	13	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LEMD2	6	33771202	33789136	FALSE	391	-0.499783837646083	34	33391964	35241176	NA	2	NA	NA	2	NA	1849212	NA	26	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LEMD3	12	65169571	65248327	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	LENEP	1	154993586	154994315	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	LENG1	19	54155161	54159882	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	LENG8	19	54448887	54462037	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	19	2	FALSE	DIPLOID	PASS
659_bTo_pair	LENG9	19	54461796	54463711	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	LEO1	15	51938025	51971806	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	LEP	7	128241284	128257628	FALSE	492	-0.463656181520944	30	126439208	129166764	1	2	1	1	2	1	2727556	1	27	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	LEPR	1	65420652	65641559	FALSE	23	-0.326404897444941	43	65224778	71080923	0.192136715055622	3	NA	0.192136715055622	3	NA	5856145	NA	29	30	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	LEPROT	1	65420587	65436007	FALSE	23	-0.326404897444941	43	65224778	71080923	0.192136715055622	3	NA	0.192136715055622	3	NA	5856145	NA	29	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	LEPROTL1	8	30095398	30177208	FALSE	524	-0.752404429217175	19	29337070	31032666	0.365165917639896	1	0	0.365165917639896	1	0	1695596	1	13	14	2	FALSE	HETLOSS	PASS
659_bTo_pair	LETM1	4	1811479	1856247	FALSE	274	-0.506929833619743	29	1810301	1893841	NA	2	NA	NA	2	NA	83540	NA	2	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LETM2	8	38386207	38409527	FALSE	534	-0.226190481947821	46	38275668	38428707	0.298322295679939	3	NA	0.298322295679939	3	NA	153039	NA	3	12	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	LETMD1	12	51047962	51060424	FALSE	772	-0.61197679162419	26	50109466	51920864	NA	2	NA	NA	2	NA	1811398	NA	27	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LEUTX	19	39776595	39786167	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	3	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	LEXM	1	54806063	54842252	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	11	2	FALSE	DIPLOID	PASS
659_bTo_pair	LFNG	7	2512529	2529177	FALSE	451	-0.380727397700309	39	2432806	2844144	NA	2	NA	NA	2	NA	411338	NA	8	14	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LGALS1	22	37675608	37679806	FALSE	1263	-0.528184158498335	29	36991204	37967644	NA	2	NA	NA	2	NA	976440	NA	31	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LGALS12	11	63506084	63516774	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	9	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	LGALS13	19	39602501	39607476	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	LGALS14	19	39704306	39709444	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	5	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	LGALS16	19	39655894	39660647	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	LGALS2	22	37570246	37582616	FALSE	1263	-0.528184158498335	29	36991204	37967644	NA	2	NA	NA	2	NA	976440	NA	31	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LGALS3	14	55124110	55145413	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	LGALS3BP	17	78971238	78980109	FALSE	1081	-0.503130193321286	34	78873805	80288187	NA	2	NA	NA	2	NA	1414382	NA	19	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LGALS4	19	38801671	38813364	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	LGALS7B	19	38789211	38791749	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	2	1	FALSE	HETLOSS	PASS
659_bTo_pair	LGALS8	1	236518000	236552981	FALSE	82	-0.550278310688863	27	235196044	241494870	1	2	1	1	2	1	6298826	1	22	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	LGALS9	17	27629798	27649560	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	LGALS9B	17	20449395	20467539	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	7	0	FALSE	CNLOH	PASS
659_bTo_pair	LGALS9C	17	18476737	18494945	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	11	1	FALSE	CNLOH	PASS
659_bTo_pair	LGALSL	2	64453969	64461381	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	LGI1	10	93757809	93806272	FALSE	662	-0.410954559094016	36	89715119	94762760	0.365165917639896	2	0	0.365165917639896	2	0	5047641	2	33	12	0	FALSE	CNLOH	PASS
659_bTo_pair	LGI2	4	24998847	25030879	FALSE	278	-0.217595572850614	44	20704713	38137253	0.345317016959666	3	1	0.345317016959666	3	1	17432540	2	29	11	1	FALSE	GAIN	PASS
659_bTo_pair	LGI3	8	22146825	22157084	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	LGI4	19	35124513	35142451	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	LGMN	14	92703807	92748702	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	LGR4	11	27365961	27472775	FALSE	690	-0.499672577426227	34	26697185	32104345	NA	2	NA	NA	2	NA	5407160	NA	20	22	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LGR5	12	71439770	71586310	FALSE	791	1.50074609147826	90	71439858	71586263	0.364342740527346	18	NA	0.364342740527346	18	NA	146405	NA	2	30	0	FALSE	AMP	PASS
659_bTo_pair	LGR6	1	202193901	202319781	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	27	5	FALSE	DIPLOID	PASS
659_bTo_pair	LGSN	6	63275951	63319977	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	LHB	19	49015980	49017091	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	LHCGR	2	48686775	48755730	FALSE	110	-0.435434252584523	30	48441014	54599245	1	2	1	1	2	1	6158231	1	18	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	LHFPL1	23	112630648	112680054	FALSE	1326	0.081501992784242	59	111246621	119452040	0.308533751035793	5	NA	0.308533751035793	5	NA	8205419	NA	28	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	LHFPL2	5	78485215	78770021	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	LHFPL3	7	104328656	104907232	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	LHFPL4	3	9498361	9553802	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	LHFPL5	6	35805293	35833874	FALSE	393	-0.47521086997284	30	35476361	36677919	1	2	1	1	2	1	1201558	1	21	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	LHFPL6	13	39209116	39603528	FALSE	830	-0.745621963362667	19	32401848	39788354	0.365165917639896	1	0	0.365165917639896	1	0	7386506	1	30	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	LHPP	10	124461834	124617888	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	9	0	FALSE	CNLOH	PASS
659_bTo_pair	LHX1	17	36936785	36944612	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	7	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	LHX2	9	124001670	124033301	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	LHX3	9	136196250	136205128	FALSE	629	-0.955558414525678	9	134750808	136485014	0.291955377254426	0	0	0.291955377254426	0	0	1734206	0	30	9	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	LHX4	1	180230286	180278982	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	LHX5	12	113462034	113472280	FALSE	806	-0.481242901669781	30	113099979	114403736	1	2	1	1	2	1	1303757	1	13	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	LHX6	9	122202577	122229626	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	LHX8	1	75128434	75161533	FALSE	25	-0.394411030612058	39	74026891	77942032	NA	2	NA	NA	2	NA	3915141	NA	22	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LHX9	1	197911902	197935478	FALSE	60	-0.443336911293225	30	196228264	201209660	1	2	1	1	2	1	4981396	1	29	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	LIAS	4	39458587	39485109	FALSE	280	-0.191477557443324	47	38829296	41740154	0.365165917639896	3	1	0.365165917639896	3	1	2910858	2	22	11	0	FALSE	GAIN	PASS
659_bTo_pair	LIF	22	30240447	30246851	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	4	0	FALSE	CNLOH	PASS
659_bTo_pair	LIFR	5	38474963	38608354	FALSE	314	-0.173277106490387	51	35904615	38924434	0.365165917639896	3	NA	0.365165917639896	3	NA	3019819	NA	16	23	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	LIG1	19	48115445	48170603	FALSE	1187	-0.64296711085636	26	47021158	48297657	NA	2	NA	NA	2	NA	1276499	NA	31	28	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LIG3	17	34980494	35009743	FALSE	1022	-0.670211431189836	22	32030679	35026358	0.291335969972972	1	0	0.291335969972972	1	0	2995679	1	23	23	2	FALSE	HETLOSS	PASS
659_bTo_pair	LIG4	13	108207439	108218368	FALSE	842	-0.555564796404534	26	103046205	109206791	NA	2	NA	NA	2	NA	6160586	NA	9	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LILRA1	19	54593582	54602090	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	12	5	FALSE	DIPLOID	PASS
659_bTo_pair	LILRA2	19	54572920	54590287	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	12	5	FALSE	DIPLOID	PASS
659_bTo_pair	LILRA4	19	54333185	54339150	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	11	2	FALSE	DIPLOID	PASS
659_bTo_pair	LILRA5	19	54307070	54313139	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	LILRA6	19	54236592	54242791	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	10	5	FALSE	DIPLOID	PASS
659_bTo_pair	LILRB1	19	54617158	54637528	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	16	6	FALSE	DIPLOID	PASS
659_bTo_pair	LILRB2	19	54273821	54281184	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	16	2	FALSE	DIPLOID	PASS
659_bTo_pair	LILRB3	19	54216278	54223506	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	14	5	FALSE	DIPLOID	PASS
659_bTo_pair	LILRB4	19	54643889	54670359	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	LILRB5	19	54249431	54257301	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	16	4	FALSE	DIPLOID	PASS
659_bTo_pair	LIM2	19	51379909	51387960	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	LIMA1	12	50175788	50283546	FALSE	772	-0.61197679162419	26	50109466	51920864	NA	2	NA	NA	2	NA	1811398	NA	27	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LIMCH1	4	41359607	41700044	FALSE	280	-0.191477557443324	47	38829296	41740154	0.365165917639896	3	1	0.365165917639896	3	1	2910858	2	22	39	2	FALSE	GAIN	PASS
659_bTo_pair	LIMD1	3	45555394	45686338	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	LIMD2	17	63695902	63701172	FALSE	1064	-0.419094292936043	39	61867575	63873599	NA	2	NA	NA	2	NA	2006024	NA	24	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LIME1	20	63736283	63739103	FALSE	1225	-0.32421417626258	43	63733191	64273510	0.192136715055622	3	NA	0.192136715055622	3	NA	540319	NA	22	6	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	LIMK1	7	74082933	74122525	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	19	1	FALSE	DIPLOID	PASS
659_bTo_pair	LIMK2	22	31212239	31280080	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	20	1	FALSE	CNLOH	PASS
659_bTo_pair	LIMS1	2	108534355	108687246	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	LIMS2	2	127638381	127681786	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	19	1	FALSE	DIPLOID	PASS
659_bTo_pair	LIN28A	1	26410778	26429722	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	LIN28B	6	104936616	105083332	FALSE	411	-0.455063723695114	34	95586870	106069771	NA	2	NA	NA	2	NA	10482901	NA	27	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LIN37	19	35748361	35754519	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	LIN52	14	74084796	74201235	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	LIN54	4	82909973	83012926	FALSE	289	-0.397475195823872	39	80335777	83458331	NA	2	NA	NA	2	NA	3122554	NA	19	24	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LIN7A	12	80792520	80937925	FALSE	793	-0.510041181295141	29	76355979	85286979	NA	2	NA	NA	2	NA	8931000	NA	22	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LIN7B	19	49114324	49118460	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	LIN7C	11	27494576	27506773	FALSE	690	-0.499672577426227	34	26697185	32104345	NA	2	NA	NA	2	NA	5407160	NA	20	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LIN9	1	226231149	226309869	FALSE	75	-1.19608418574967	6	226152597	226309193	0.365165917639896	0	0	0.365165917639896	0	0	156596	0	3	15	0	FALSE	HOMDEL	PASS
659_bTo_pair	LINC02210-CRHR1	17	45620344	45835826	FALSE	1046	-0.746772159255206	19	45395806	47696360	0.365165917639896	1	0	0.365165917639896	1	0	2300554	1	26	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	LINGO1	15	77613027	77820900	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	9	2	FALSE	HETLOSS	PASS
659_bTo_pair	LINGO2	9	27948078	28670286	FALSE	585	-0.464842894155678	32	22447079	32572950	0.365165917639896	2	0	0.365165917639896	2	0	10125871	2	19	8	0	FALSE	CNLOH	PASS
659_bTo_pair	LINGO3	19	2289784	2292024	FALSE	1120	-0.63588318052236	23	2233887	3062886	0.186356639256811	1	0	0.186356639256811	1	0	828999	1	28	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	LINGO4	1	151800264	151806154	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	LINS1	15	100559369	100603230	FALSE	933	-0.918772702357227	12	98968746	101922991	0.365165917639896	1	0	0.365165917639896	1	0	2954245	1	21	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	LIPA	10	89213569	89414557	FALSE	660	-0.0564321858974841	55	89034693	89433298	0.328696605851359	4	NA	0.328696605851359	4	NA	398605	NA	8	40	3	FALSE	GAIN (many states)	PASS
659_bTo_pair	LIPC	15	58410569	58569843	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	LIPE	19	42401507	42427426	FALSE	1179	-0.582084941516902	26	42297317	43535595	NA	2	NA	NA	2	NA	1238278	NA	25	18	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LIPF	10	88664441	88678814	FALSE	658	-0.534531933000134	29	88275028	88948930	NA	2	NA	NA	2	NA	673902	NA	9	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LIPG	18	49560699	49599182	FALSE	1103	-0.712987700962632	19	48029643	51023578	0.365165917639896	1	0	0.365165917639896	1	0	2993935	1	20	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	LIPH	3	185506262	185552613	FALSE	261	-0.625921534938974	26	185491707	185937908	NA	2	NA	NA	2	NA	446201	NA	5	11	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LIPI	21	14108813	14210891	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	LIPJ	10	88586753	88606976	FALSE	658	-0.534531933000134	29	88275028	88948930	NA	2	NA	NA	2	NA	673902	NA	9	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LIPK	10	88724544	88752786	FALSE	658	-0.534531933000134	29	88275028	88948930	NA	2	NA	NA	2	NA	673902	NA	9	10	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LIPM	10	88802730	88820546	FALSE	658	-0.534531933000134	29	88275028	88948930	NA	2	NA	NA	2	NA	673902	NA	9	9	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LIPN	10	88761406	88778242	FALSE	658	-0.534531933000134	29	88275028	88948930	NA	2	NA	NA	2	NA	673902	NA	9	9	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LIPT1	2	99154955	99163157	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	5	2	FALSE	DIPLOID	PASS
659_bTo_pair	LIPT2	11	74491712	74493733	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	4	0	FALSE	GAIN	PASS
659_bTo_pair	LITAF	16	11547722	11636381	FALSE	954	-0.618769947650953	26	11345676	11941160	NA	2	NA	NA	2	NA	595484	NA	9	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LIX1	5	97091867	97142872	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	LIX1L	1	145933423	145958001	FALSE	44	-0.0508975396039555	55	119911615	146019534	0.328696605851359	4	NA	0.328696605851359	4	NA	26107919	NA	33	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	LKAAEAR1	20	64083380	64084359	FALSE	1225	-0.32421417626258	43	63733191	64273510	0.192136715055622	3	NA	0.192136715055622	3	NA	540319	NA	22	4	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	LLCFC1	7	142939343	142940868	FALSE	501	-0.513243901966068	29	142219948	142940594	NA	2	NA	NA	2	NA	720646	NA	9	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LLGL1	17	18225587	18244875	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	25	1	FALSE	CNLOH	PASS
659_bTo_pair	LLGL2	17	75525080	75575208	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	26	8	FALSE	DIPLOID	PASS
659_bTo_pair	LLPH	12	66116555	66130768	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	LMAN1	18	59327823	59359962	FALSE	1107	-0.779150604055344	19	58918284	59696746	0.365165917639896	1	0	0.365165917639896	1	0	778462	1	7	14	1	FALSE	HETLOSS	PASS
659_bTo_pair	LMAN1L	15	74812716	74825758	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	LMAN2	5	177331562	177351852	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	LMAN2L	2	96705929	96740064	FALSE	128	-0.534748403488722	29	96267335	97158701	NA	2	NA	NA	2	NA	891366	NA	17	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LMBR1	7	156668946	156893230	FALSE	509	-0.56054035608462	23	152759958	159144708	0.186356639256811	1	0	0.186356639256811	1	0	6384750	1	20	21	2	FALSE	HETLOSS	PASS
659_bTo_pair	LMBR1L	12	49096551	49110900	FALSE	770	-0.500134310902258	34	49065087	50081631	NA	2	NA	NA	2	NA	1016544	NA	25	17	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LMBRD1	6	69675793	69867236	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	LMBRD2	5	36098412	36151961	FALSE	314	-0.173277106490387	51	35904615	38924434	0.365165917639896	3	NA	0.365165917639896	3	NA	3019819	NA	16	17	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	LMCD1	3	8501707	8574673	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	LMF1	16	853634	981318	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	14	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	LMF2	22	50502949	50507691	FALSE	1272	-0.260847831900416	46	50286270	50731222	0.298322295679939	3	NA	0.298322295679939	3	NA	444952	NA	19	15	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	LMLN	3	197960200	198043720	FALSE	271	-0.194588974812627	47	196198492	198169864	0.365165917639896	3	1	0.365165917639896	3	1	1971372	2	29	17	3	FALSE	GAIN	PASS
659_bTo_pair	LMLN2	14	23099065	23104992	FALSE	850	-0.604709518345526	26	22902059	23302562	NA	2	NA	NA	2	NA	400503	NA	18	14	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LMNA	1	156082573	156140089	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	18	1	FALSE	DIPLOID	PASS
659_bTo_pair	LMNB1	5	126776623	126837020	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	LMNB2	19	2427638	2456996	FALSE	1120	-0.63588318052236	23	2233887	3062886	0.186356639256811	1	0	0.186356639256811	1	0	828999	1	28	13	2	FALSE	HETLOSS	PASS
659_bTo_pair	LMNTD1	12	25409307	25648579	FALSE	759	-0.427669886187443	30	25503824	31088026	1	2	1	1	2	1	5584202	1	28	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	LMNTD2	11	554855	560779	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	16	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	LMO1	11	8224304	8268716	FALSE	684	1.64099925987129	96	8140103	8392667	0.364342740527346	20	NA	0.364342740527346	20	NA	252564	NA	3	9	2	FALSE	AMP	PASS
659_bTo_pair	LMO2	11	33858576	33892289	FALSE	693	1.48557718285554	90	33858770	34071918	0.364342740527346	18	NA	0.364342740527346	18	NA	213148	NA	2	13	3	FALSE	AMP	PASS
659_bTo_pair	LMO3	12	16548373	16610594	FALSE	753	-0.517160615058114	27	12726042	18242949	1	2	1	1	2	1	5516907	1	31	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	LMO4	1	87328468	87348923	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	LMO7	13	75620434	75859870	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	42	2	FALSE	CNLOH	PASS
659_bTo_pair	LMOD1	1	201896452	201946588	FALSE	61	-0.50531963543648	34	201209721	201898337	NA	2	NA	NA	2	NA	688616	NA	11	8	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	LMOD2	7	123655807	123664290	FALSE	490	-0.576498321273708	26	116888215	124790543	NA	2	NA	NA	2	NA	7902328	NA	33	9	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LMOD3	3	69106872	69123032	FALSE	228	-0.860828429618822	13	64010871	69385924	0.365165917639896	1	0	0.365165917639896	1	0	5375053	1	16	9	2	FALSE	HETLOSS	PASS
659_bTo_pair	LMTK2	7	98106885	98209633	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	25	3	FALSE	HETLOSS	PASS
659_bTo_pair	LMTK3	19	48485271	48513935	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	27	0	FALSE	HETLOSS	PASS
659_bTo_pair	LMX1A	1	165201867	165356715	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	LMX1B	9	126614443	126701032	FALSE	619	-0.820686000870706	14	125203036	127778681	0.365165917639896	1	0	0.365165917639896	1	0	2575645	1	23	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	LNP1	3	100401193	100456319	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	3	1	FALSE	GAIN	PASS
659_bTo_pair	LNPEP	5	96935394	97037515	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	LNPK	2	175923892	176002839	FALSE	153	-0.469039793655258	34	172736055	177217715	NA	2	NA	NA	2	NA	4481660	NA	28	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LNX1	4	53459301	53701405	FALSE	283	-0.7726728361031	19	49038034	54241294	0.365165917639896	1	0	0.365165917639896	1	0	5203260	1	15	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	LNX2	13	27545911	27620404	FALSE	824	-0.820211361281197	14	23365275	27988570	0.365165917639896	1	0	0.365165917639896	1	0	4623295	1	32	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	LONP1	19	5691834	5720572	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	22	1	FALSE	DIPLOID	PASS
659_bTo_pair	LONP2	16	48244296	48363122	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	21	1	FALSE	DIPLOID	PASS
659_bTo_pair	LONRF1	8	12721894	12756073	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	LONRF2	2	100273291	100322733	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	14	2	FALSE	DIPLOID	PASS
659_bTo_pair	LONRF3	23	118974614	119018355	FALSE	1326	0.081501992784242	59	111246621	119452040	0.308533751035793	5	NA	0.308533751035793	5	NA	8205419	NA	28	16	0	FALSE	AMP (many states)	PASS
659_bTo_pair	LOR	1	153259700	153262122	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	4	2	FALSE	DIPLOID	PASS
659_bTo_pair	LOX	5	122063195	122078360	FALSE	331	-0.706980197323045	20	112861366	122075379	0.365165917639896	1	0	0.365165917639896	1	0	9214013	1	31	9	0	TRUE	HETLOSS	PASS
659_bTo_pair	LOXHD1	18	46476972	46657220	FALSE	1100	-0.758401070483502	19	45624783	47803983	0.365165917639896	1	0	0.365165917639896	1	0	2179200	1	22	47	0	FALSE	HETLOSS	PASS
659_bTo_pair	LOXL1	15	73925989	73952137	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	LOXL2	8	23297189	23425328	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	14	3	FALSE	HETLOSS	PASS
659_bTo_pair	LOXL3	2	74532414	74555690	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	21	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LOXL4	10	98247690	98268250	FALSE	666	-0.516928660882684	29	98163350	100063639	NA	2	NA	NA	2	NA	1900289	NA	16	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LPA	6	160531483	160664259	FALSE	444	-0.505238631103688	30	158776425	160753038	1	2	1	1	2	1	1976613	1	17	28	7	FALSE	DIPLOID	PASS
659_bTo_pair	LPAR1	9	110873263	111038458	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	LPAR2	19	19623668	19628930	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	LPAR3	1	84811602	84893213	FALSE	27	-0.365760579101575	39	77969065	85252731	NA	2	NA	NA	2	NA	7283666	NA	23	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LPAR4	23	78747709	78757094	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	5	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	LPAR5	12	6618835	6636447	FALSE	743	-0.145896859645485	51	6620180	6938488	0.365165917639896	3	NA	0.365165917639896	3	NA	318308	NA	20	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	LPAR6	13	48389567	48444704	FALSE	834	1.28176747736728	86	48261244	48481826	0.364342740527346	15	NA	0.364342740527346	15	NA	220582	NA	3	7	0	FALSE	AMP	PASS
659_bTo_pair	LPCAT1	5	1456480	1523977	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	14	2	FALSE	GAIN	PASS
659_bTo_pair	LPCAT2	16	55508998	55586670	FALSE	968	-0.505434692233225	30	51151209	56683230	1	2	1	1	2	1	5532021	1	34	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	LPCAT3	12	6976186	7018510	FALSE	745	-0.243574834353832	44	6965649	8175835	0.345317016959666	3	1	0.345317016959666	3	1	1210186	2	26	12	0	FALSE	GAIN	PASS
659_bTo_pair	LPCAT4	15	34358618	34367278	FALSE	890	-0.864832779596883	13	34359248	37966686	0.365165917639896	1	0	0.365165917639896	1	0	3607438	1	12	14	1	FALSE	HETLOSS	PASS
659_bTo_pair	LPGAT1	1	211743457	211830772	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	LPIN1	2	11677595	11827409	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	27	1	FALSE	DIPLOID	PASS
659_bTo_pair	LPIN2	18	2916994	3013315	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	21	1	FALSE	GAIN	PASS
659_bTo_pair	LPIN3	20	41340920	41360582	FALSE	1207	-0.45870607109039	34	41137791	42067755	NA	2	NA	NA	2	NA	929964	NA	5	21	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LPL	8	19901717	19967259	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	10	2	FALSE	HETLOSS	PASS
659_bTo_pair	LPO	17	58218548	58268518	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	18	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LPP	3	188153284	188890671	FALSE	267	0.0196500930294615	56	188406158	189873033	0.365165917639896	4	NA	0.365165917639896	4	NA	1466875	NA	3	11	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	LPXN	11	58526871	58578220	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	11	0	FALSE	GAIN	PASS
659_bTo_pair	LRAT	4	154626945	154753118	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	LRBA	4	150264531	151015727	FALSE	300	-0.423460920061428	34	143186078	151174790	NA	2	NA	NA	2	NA	7988712	NA	32	67	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LRCH1	13	46553168	46753040	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	22	2	FALSE	HETLOSS	PASS
659_bTo_pair	LRCH2	23	115110616	115234072	FALSE	1326	0.081501992784242	59	111246621	119452040	0.308533751035793	5	NA	0.308533751035793	5	NA	8205419	NA	28	34	1	FALSE	AMP (many states)	PASS
659_bTo_pair	LRCH3	3	197791226	197888436	FALSE	271	-0.194588974812627	47	196198492	198169864	0.365165917639896	3	1	0.365165917639896	3	1	1971372	2	29	20	2	FALSE	GAIN	PASS
659_bTo_pair	LRCH4	7	100574011	100586153	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	20	1	FALSE	HETLOSS	PASS
659_bTo_pair	LRCOL1	12	132603150	132610543	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	LRFN1	19	39306568	39315336	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	10	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	LRFN2	6	40391586	40587465	FALSE	397	-0.509151429367598	27	37213022	41687167	1	2	1	1	2	1	4474145	1	33	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	LRFN3	19	35935358	35945767	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	LRFN4	11	66856647	66860475	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	9	0	FALSE	GAIN	PASS
659_bTo_pair	LRFN5	14	41607570	41904549	FALSE	858	-0.388807455224718	39	37680254	45134449	NA	2	NA	NA	2	NA	7454195	NA	16	11	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LRG1	19	4536409	4540474	FALSE	1124	-0.62008955817668	23	4168484	5151543	0.186356639256811	1	0	0.186356639256811	1	0	983059	1	28	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	LRGUK	7	134127299	134264591	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	22	1	FALSE	DIPLOID	PASS
659_bTo_pair	LRIF1	1	110947185	110964079	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	LRIG1	3	66378797	66501263	FALSE	228	-0.860828429618822	13	64010871	69385924	0.365165917639896	1	0	0.365165917639896	1	0	5375053	1	16	24	0	FALSE	HETLOSS	PASS
659_bTo_pair	LRIG2	1	113073209	113132260	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	23	2	FALSE	HETLOSS	PASS
659_bTo_pair	LRIG3	12	58872149	58920522	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	25	1	FALSE	DIPLOID	PASS
659_bTo_pair	LRIT1	10	84231593	84241461	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	10	0	FALSE	CNLOH	PASS
659_bTo_pair	LRIT2	10	84220495	84225589	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	9	0	FALSE	CNLOH	PASS
659_bTo_pair	LRIT3	4	109848202	109872315	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	11	3	FALSE	DIPLOID	PASS
659_bTo_pair	LRMDA	10	75431453	76560167	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	8	0	FALSE	CNLOH	PASS
659_bTo_pair	LRMP	12	25004342	25108334	FALSE	757	-0.490002350483383	34	21512373	25195063	NA	2	NA	NA	2	NA	3682690	NA	15	36	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LRP1	12	57128493	57213351	FALSE	779	2.01501303392276	104	57089281	57128995	0.364342740527346	27	NA	0.364342740527346	27	NA	39714	NA	3	102	8	TRUE	AMP	PASS
659_bTo_pair	LRP10	14	22871613	22881580	FALSE	849	-0.198876830204613	48	21522824	22901846	0.365165917639896	3	NA	0.365165917639896	3	NA	1379022	NA	15	13	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	LRP11	6	149818798	149864026	FALSE	433	-0.531492105252902	29	149727245	150020184	NA	2	NA	NA	2	NA	292939	NA	9	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LRP12	8	104489231	104589024	FALSE	561	-0.210477706860293	47	102652438	116770243	0.365165917639896	3	1	0.365165917639896	3	1	14117805	2	32	15	0	FALSE	GAIN	PASS
659_bTo_pair	LRP1B	2	140231423	142131701	FALSE	146	0.213237942084292	62	140231547	142130872	0.364342740527346	5	NA	0.364342740527346	5	NA	1899325	NA	1	114	8	FALSE	AMP (many states)	PASS
659_bTo_pair	LRP2	2	169127109	169362685	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	92	12	FALSE	DIPLOID	PASS
659_bTo_pair	LRP2BP	4	185363879	185395899	FALSE	305	-0.853036814117495	12	184629284	186555336	0.365165917639896	1	0	0.365165917639896	1	0	1926052	1	22	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	LRP3	19	33177603	33208867	FALSE	1165	-0.570153591761829	23	29923697	33225768	0.186356639256811	1	0	0.186356639256811	1	0	3302071	1	18	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	LRP4	11	46856868	46918642	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	42	4	FALSE	DIPLOID	PASS
659_bTo_pair	LRP5	11	68312609	68449275	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	33	0	FALSE	GAIN	PASS
659_bTo_pair	LRP5L	22	25351418	25405377	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	6	1	FALSE	CNLOH	PASS
659_bTo_pair	LRP6	12	12116025	12267012	FALSE	751	-0.581914964256938	26	12079319	12707317	NA	2	NA	NA	2	NA	627998	NA	7	28	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LRP8	1	53242364	53328070	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	22	2	FALSE	DIPLOID	PASS
659_bTo_pair	LRPAP1	4	3503597	3532559	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	8	1	FALSE	GAIN	PASS
659_bTo_pair	LRPPRC	2	43886508	43996005	FALSE	106	-0.392858868113437	39	42335725	46184779	NA	2	NA	NA	2	NA	3849054	NA	22	38	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LRR1	14	49598697	49614672	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	LRRC1	6	53794497	53924121	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	LRRC10	12	69608564	69611162	FALSE	790	-0.377310724638489	39	69586733	71157609	NA	2	NA	NA	2	NA	1570876	NA	11	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LRRC10B	11	61508800	61511018	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	4	1	FALSE	GAIN	PASS
659_bTo_pair	LRRC14	8	144517992	144525178	FALSE	569	-0.29739638799535	43	144518163	145054121	0.192136715055622	3	NA	0.192136715055622	3	NA	535958	NA	13	18	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	LRRC14B	5	191511	195353	FALSE	308	-0.255094097331532	44	92297	1246091	0.345317016959666	3	1	0.345317016959666	3	1	1153794	2	18	6	0	FALSE	GAIN	PASS
659_bTo_pair	LRRC15	3	194355247	194369743	FALSE	269	-0.263219948753545	44	189957970	195888442	0.345317016959666	3	1	0.345317016959666	3	1	5930472	2	31	8	0	FALSE	GAIN	PASS
659_bTo_pair	LRRC17	7	102912991	102944949	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	LRRC18	10	48909483	48914232	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	4	0	FALSE	CNLOH	PASS
659_bTo_pair	LRRC19	9	26993136	27005693	FALSE	585	-0.464842894155678	32	22447079	32572950	0.365165917639896	2	0	0.365165917639896	2	0	10125871	2	19	7	1	FALSE	CNLOH	PASS
659_bTo_pair	LRRC2	3	46515423	46580099	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	LRRC20	10	70298970	70382650	FALSE	651	-0.523280686314431	28	68722553	70760843	0.351300687168522	2	0	0.351300687168522	2	0	2038290	2	27	4	0	FALSE	CNLOH	PASS
659_bTo_pair	LRRC23	12	6873569	6914243	FALSE	743	-0.145896859645485	51	6620180	6938488	0.365165917639896	3	NA	0.365165917639896	3	NA	318308	NA	20	8	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	LRRC24	8	144522377	144527032	FALSE	569	-0.29739638799535	43	144518163	145054121	0.192136715055622	3	NA	0.192136715055622	3	NA	535958	NA	13	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	LRRC25	19	18391144	18397617	FALSE	1159	-0.165917001507678	49	18177228	19138502	0.365165917639896	3	1	0.365165917639896	3	1	961274	2	36	4	0	FALSE	GAIN	PASS
659_bTo_pair	LRRC26	9	137168758	137170051	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	5	2	FALSE	HETLOSS	PASS
659_bTo_pair	LRRC27	10	132332154	132379918	FALSE	676	-0.612597388333807	25	132187132	133626712	0.365165917639896	1	0	0.365165917639896	1	0	1439580	1	27	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	LRRC28	15	99251362	99390729	FALSE	933	-0.918772702357227	12	98968746	101922991	0.365165917639896	1	0	0.365165917639896	1	0	2954245	1	21	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	LRRC29	16	67207139	67227048	FALSE	976	-0.467350965811123	34	67110264	67538977	NA	2	NA	NA	2	NA	428713	NA	24	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LRRC3	21	44455486	44462196	FALSE	1236	-0.500794339727727	30	44229616	44592452	1	2	1	1	2	1	362836	1	14	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	LRRC30	18	7231125	7232047	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	4	0	FALSE	GAIN	PASS
659_bTo_pair	LRRC31	3	169839179	169869930	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	10	0	FALSE	GAIN	PASS
659_bTo_pair	LRRC32	11	76657524	76670747	FALSE	710	-0.314972965919996	43	76659622	77285059	0.192136715055622	3	NA	0.192136715055622	3	NA	625437	NA	8	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	LRRC34	3	169793428	169812986	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	11	1	FALSE	GAIN	PASS
659_bTo_pair	LRRC36	16	67326798	67385203	FALSE	976	-0.467350965811123	34	67110264	67538977	NA	2	NA	NA	2	NA	428713	NA	24	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LRRC37A	17	46292733	46337794	FALSE	1046	-0.746772159255206	19	45395806	47696360	0.365165917639896	1	0	0.365165917639896	1	0	2300554	1	26	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	LRRC37A2	17	46511511	46555650	FALSE	1046	-0.746772159255206	19	45395806	47696360	0.365165917639896	1	0	0.365165917639896	1	0	2300554	1	26	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	LRRC37A3	17	64854312	64919480	FALSE	1066	-0.447707994366894	34	63941413	64859452	NA	2	NA	NA	2	NA	918039	NA	12	21	3	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	LRRC37B	17	32007872	32053504	FALSE	1021	0.88632241734584	76	31932034	32027770	0.364342740527346	10	NA	0.364342740527346	10	NA	95736	NA	2	19	0	TRUE	AMP	PASS
659_bTo_pair	LRRC38	1	13474977	13514048	FALSE	5	-0.657750557858816	22	13225408	13779152	0.291335969972972	1	0	0.291335969972972	1	0	553744	1	12	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	LRRC39	1	100148449	100178273	FALSE	31	-0.34979279123772	43	94820443	100270584	0.192136715055622	3	NA	0.192136715055622	3	NA	5450141	NA	22	10	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	LRRC3B	3	26622806	26717537	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	LRRC3C	17	39941474	39944747	FALSE	1030	-0.735138103765796	19	39868404	40278196	0.365165917639896	1	0	0.365165917639896	1	0	409792	1	14	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	LRRC4	7	128027071	128032107	FALSE	492	-0.463656181520944	30	126439208	129166764	1	2	1	1	2	1	2727556	1	27	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	LRRC40	1	70144805	70205620	FALSE	23	-0.326404897444941	43	65224778	71080923	0.192136715055622	3	NA	0.192136715055622	3	NA	5856145	NA	29	16	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	LRRC41	1	46261196	46303608	FALSE	16	-0.485631979032023	30	46175602	48453048	1	2	1	1	2	1	2277446	1	32	33	0	FALSE	DIPLOID	PASS
659_bTo_pair	LRRC42	1	53946077	53968168	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	LRRC43	12	122167738	122203471	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	19	2	FALSE	DIPLOID	PASS
659_bTo_pair	LRRC45	17	82023302	82031151	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	LRRC46	17	47831627	47837713	FALSE	1049	-0.703360644300681	22	47810585	48529853	0.291335969972972	1	0	0.291335969972972	1	0	719268	1	15	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	LRRC47	1	3778558	3796504	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	LRRC49	15	70853239	71053657	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	23	2	FALSE	HETLOSS	PASS
659_bTo_pair	LRRC4B	19	50516892	50568045	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	LRRC4C	11	40114203	41459773	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	LRRC52	1	165544007	165563961	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	LRRC53	1	74469878	74512614	FALSE	25	-0.394411030612058	39	74026891	77942032	NA	2	NA	NA	2	NA	3915141	NA	22	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LRRC55	11	57181747	57191717	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	6	2	FALSE	GAIN	PASS
659_bTo_pair	LRRC56	11	537527	554916	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	12	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	LRRC57	15	42537820	42548802	FALSE	898	-0.892191685906218	12	42081573	42681446	0.365165917639896	1	0	0.365165917639896	1	0	599873	1	13	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	LRRC58	3	120324509	120349339	FALSE	236	-0.555107352649266	26	120168171	121419120	NA	2	NA	NA	2	NA	1250949	NA	8	7	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LRRC59	17	50375059	50397553	FALSE	1053	-0.561829441831031	26	49646906	50626743	NA	2	NA	NA	2	NA	979837	NA	25	18	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LRRC6	8	132571953	132675617	FALSE	565	-0.282741903777565	44	129748604	134610527	0.345317016959666	3	1	0.345317016959666	3	1	4861923	2	18	12	2	FALSE	GAIN	PASS
659_bTo_pair	LRRC61	7	150322639	150338150	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	LRRC63	13	46211943	46277366	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	LRRC66	4	51993702	52017620	FALSE	283	-0.7726728361031	19	49038034	54241294	0.365165917639896	1	0	0.365165917639896	1	0	5203260	1	15	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	LRRC69	8	91101832	91219236	FALSE	557	-0.436164323203642	34	90006291	91395139	NA	2	NA	NA	2	NA	1388848	NA	9	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LRRC7	1	69568398	70151945	FALSE	23	-0.326404897444941	43	65224778	71080923	0.192136715055622	3	NA	0.192136715055622	3	NA	5856145	NA	29	39	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	LRRC70	5	62578735	62581448	FALSE	323	-0.645106866010582	25	58495036	67196614	0.365165917639896	1	0	0.365165917639896	1	0	8701578	1	31	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	LRRC71	1	156920650	156933094	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	15	2	FALSE	DIPLOID	PASS
659_bTo_pair	LRRC72	7	16526880	16581568	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	9	0	FALSE	GAIN	PASS
659_bTo_pair	LRRC73	6	43506969	43510686	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	LRRC74A	14	76826372	76870302	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	LRRC74B	22	21045960	21064168	FALSE	1246	-0.481954888210425	34	21001894	21693896	NA	2	NA	NA	2	NA	692002	NA	14	9	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LRRC75A	17	16441577	16492153	FALSE	1012	-0.646922995033775	26	16234077	17184849	NA	2	NA	NA	2	NA	950772	NA	11	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LRRC75B	22	24585620	24593208	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	6	0	FALSE	CNLOH	PASS
659_bTo_pair	LRRC8A	9	128882112	128918039	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	LRRC8B	1	89524836	89597864	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	LRRC8C	1	89633072	89769903	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	LRRC8D	1	89821014	89936611	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	LRRC8E	19	7888505	7902021	FALSE	1131	-0.427137871910925	34	7870993	7912384	NA	2	NA	NA	2	NA	41391	NA	3	10	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LRRC9	14	59919713	60063559	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	33	3	FALSE	DIPLOID	PASS
659_bTo_pair	LRRCC1	8	85107147	85146076	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	20	1	FALSE	GAIN	PASS
659_bTo_pair	LRRD1	7	92141643	92179531	FALSE	479	-0.448308050861149	30	87602941	92590330	1	2	1	1	2	1	4987389	1	30	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	LRRFIP1	2	237627576	237813682	FALSE	190	-0.691419458816616	21	236392006	238848635	0.140309795179477	0	0	0.140309795179477	0	0	2456629	0	22	33	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	LRRFIP2	3	37052656	37183689	FALSE	209	-0.637968449787088	26	31990360	37328493	NA	2	NA	NA	2	NA	5338133	NA	26	28	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LRRIQ1	12	85036314	85264457	FALSE	793	-0.510041181295141	29	76355979	85286979	NA	2	NA	NA	2	NA	8931000	NA	22	34	6	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LRRIQ3	1	74026015	74198187	FALSE	25	-0.394411030612058	39	74026891	77942032	NA	2	NA	NA	2	NA	3915141	NA	22	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LRRIQ4	3	169821922	169837775	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	9	0	FALSE	GAIN	PASS
659_bTo_pair	LRRK1	15	100919215	101078254	FALSE	933	-0.918772702357227	12	98968746	101922991	0.365165917639896	1	0	0.365165917639896	1	0	2954245	1	21	42	6	FALSE	HETLOSS	PASS
659_bTo_pair	LRRK2	12	40196744	40369285	FALSE	761	-0.518834393047475	27	38323923	40473121	1	2	1	1	2	1	2149198	1	8	64	6	FALSE	DIPLOID	PASS
659_bTo_pair	LRRN1	3	3799437	3847703	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	LRRN2	1	204617170	204685733	FALSE	65	0.346765491902278	65	204411239	204617919	0.364342740527346	6	NA	0.364342740527346	6	NA	206680	NA	4	8	3	TRUE	AMP (many states)	PASS
659_bTo_pair	LRRN3	7	111091006	111125454	FALSE	488	-0.464127371400283	34	107070260	116559206	NA	2	NA	NA	2	NA	9488946	NA	33	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LRRN4	20	6040778	6054049	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	LRRN4CL	11	62686402	62689899	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	LRRTM1	2	80288351	80304749	FALSE	123	0.207940593066719	62	79122912	84431581	0.364342740527346	5	NA	0.364342740527346	5	NA	5308669	NA	5	7	0	FALSE	AMP (many states)	PASS
659_bTo_pair	LRRTM2	5	138868923	138875368	FALSE	337	0.55019851258722	68	138753479	138951173	0.364342740527346	8	NA	0.364342740527346	8	NA	197694	NA	3	8	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	LRRTM3	10	66926006	67099830	FALSE	649	-0.498971247588349	34	63133428	68527348	NA	2	NA	NA	2	NA	5393920	NA	15	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LRRTM4	2	76747719	77593319	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LRSAM1	9	127451486	127503501	FALSE	619	-0.820686000870706	14	125203036	127778681	0.365165917639896	1	0	0.365165917639896	1	0	2575645	1	23	24	2	FALSE	HETLOSS	PASS
659_bTo_pair	LRTM1	3	54918237	54967088	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	LRTM2	12	1820267	1836752	FALSE	739	-0.369471841682825	39	1104785	3873202	NA	2	NA	NA	2	NA	2768417	NA	20	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LRTOMT	11	72080331	72110782	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	21	4	FALSE	GAIN	PASS
659_bTo_pair	LRWD1	7	102464929	102473168	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	16	2	FALSE	DIPLOID	PASS
659_bTo_pair	LSAMP	3	115802363	117139389	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	9	0	FALSE	GAIN	PASS
659_bTo_pair	LSG1	3	194640788	194672477	FALSE	269	-0.263219948753545	44	189957970	195888442	0.345317016959666	3	1	0.345317016959666	3	1	5930472	2	31	15	2	FALSE	GAIN	PASS
659_bTo_pair	LSM1	8	38163321	38176730	FALSE	532	-0.898955944857558	13	37845201	38269206	0.365165917639896	1	0	0.365165917639896	1	0	424005	1	12	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	LSM10	1	36391238	36397892	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	LSM11	5	157743695	157760709	FALSE	353	-0.698571741790457	22	157138801	161546576	0.291335969972972	1	0	0.291335969972972	1	0	4407775	1	29	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	LSM12	17	44034635	44067619	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LSM14A	19	34172504	34229515	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	LSM14B	20	62122461	62135378	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	LSM2	6	31797396	31806984	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	LSM3	3	14178358	14201119	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	LSM4	19	18306230	18323274	FALSE	1159	-0.165917001507678	49	18177228	19138502	0.365165917639896	3	1	0.365165917639896	3	1	961274	2	36	5	0	FALSE	GAIN	PASS
659_bTo_pair	LSM5	7	32485332	32495283	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	5	0	FALSE	GAIN	PASS
659_bTo_pair	LSM6	4	146175685	146200000	FALSE	300	-0.423460920061428	34	143186078	151174790	NA	2	NA	NA	2	NA	7988712	NA	32	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LSM7	19	2321517	2328620	FALSE	1120	-0.63588318052236	23	2233887	3062886	0.186356639256811	1	0	0.186356639256811	1	0	828999	1	28	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	LSM8	7	118184032	118192824	FALSE	490	-0.576498321273708	26	116888215	124790543	NA	2	NA	NA	2	NA	7902328	NA	33	4	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LSMEM1	7	112480853	112491062	FALSE	488	-0.464127371400283	34	107070260	116559206	NA	2	NA	NA	2	NA	9488946	NA	33	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LSMEM2	3	50279027	50288114	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	LSP1	11	1852970	1892267	FALSE	679	-0.702000712925199	21	1256247	1938477	0.140309795179477	0	0	0.140309795179477	0	0	682230	0	19	13	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	LSR	19	35248330	35267964	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	LSS	21	46188141	46228824	FALSE	1239	-0.568555801579827	23	44960223	46664365	0.186356639256811	1	0	0.186356639256811	1	0	1704142	1	18	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	LST1	6	31586124	31588909	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	LTA	6	31572054	31574324	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	LTA4H	12	96000828	96043520	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	20	1	FALSE	DIPLOID	PASS
659_bTo_pair	LTB	6	31580525	31582522	TRUE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	LTB4R	14	24311450	24318036	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	LTB4R2	14	24305734	24312053	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	LTBP1	2	32946972	33399509	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	40	3	FALSE	DIPLOID	PASS
659_bTo_pair	LTBP2	14	74498170	74612378	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	41	1	FALSE	DIPLOID	PASS
659_bTo_pair	LTBP3	11	65538805	65558930	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	29	1	FALSE	GAIN	PASS
659_bTo_pair	LTBP4	19	40592883	40629818	FALSE	1173	-0.760690164248215	19	40322104	40807873	0.365165917639896	1	0	0.365165917639896	1	0	485769	1	21	40	3	FALSE	HETLOSS	PASS
659_bTo_pair	LTBR	12	6375045	6391571	FALSE	741	-0.251609480735115	44	4489790	6567957	0.345317016959666	3	1	0.345317016959666	3	1	2078167	2	28	13	0	FALSE	GAIN	PASS
659_bTo_pair	LTC4S	5	179793980	179796647	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	LTF	3	46435645	46485234	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	18	3	FALSE	HETLOSS	PASS
659_bTo_pair	LTK	15	41503638	41513887	FALSE	894	-0.874433234740196	13	41183964	41662415	0.365165917639896	1	0	0.365165917639896	1	0	478451	1	12	20	1	FALSE	HETLOSS	PASS
659_bTo_pair	LTN1	21	28928144	28992956	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	36	0	FALSE	DIPLOID	PASS
659_bTo_pair	LTO1	11	69653076	69675416	FALSE	707	2.08552379511487	105	69641288	69819259	0.364342740527346	28	NA	0.364342740527346	28	NA	177971	NA	5	11	0	FALSE	AMP	PASS
659_bTo_pair	LTV1	6	143843344	143863812	FALSE	431	-0.504239059693729	30	143136912	149638436	1	2	1	1	2	1	6501524	1	29	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	LUC7L	16	188969	229463	FALSE	934	-0.725703643263354	19	47610	287124	0.365165917639896	1	0	0.365165917639896	1	0	239514	1	16	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	LUC7L2	7	139340359	139423457	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	LUC7L3	17	50719544	50756213	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LUM	12	91102629	91111831	FALSE	794	-0.258431968401282	46	85301316	91178343	0.298322295679939	3	NA	0.298322295679939	3	NA	5877027	NA	19	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	LURAP1	1	46203334	46221261	FALSE	16	-0.485631979032023	30	46175602	48453048	1	2	1	1	2	1	2277446	1	32	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	LURAP1L	9	12775021	12822131	FALSE	581	-0.746183084602222	19	10618009	19786745	0.365165917639896	1	0	0.365165917639896	1	0	9168736	1	24	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	LUZP1	1	23084023	23177808	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	LUZP2	11	24496970	25082631	FALSE	689	-0.596895402665017	26	22674905	26692543	NA	2	NA	NA	2	NA	4017638	NA	7	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LUZP4	23	115289727	115307556	FALSE	1326	0.081501992784242	59	111246621	119452040	0.308533751035793	5	NA	0.308533751035793	5	NA	8205419	NA	28	6	0	FALSE	AMP (many states)	PASS
659_bTo_pair	LUZP6	7	135927274	135927450	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	LVRN	5	115962454	116027619	FALSE	331	-0.706980197323045	20	112861366	122075379	0.365165917639896	1	0	0.365165917639896	1	0	9214013	1	31	22	3	FALSE	HETLOSS	PASS
659_bTo_pair	LXN	3	158645822	158672693	FALSE	250	-0.231905273142314	46	156829339	161250770	0.298322295679939	3	NA	0.298322295679939	3	NA	4421431	NA	26	18	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	LY6D	8	142784880	142786592	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	LY6E	8	143017982	143023832	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	LY6G5B	6	31670167	31673776	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	LY6G5C	6	31676684	31684040	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	LY6G6C	6	31718648	31721845	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	LY6G6D	6	31715356	31717804	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	3	1	FALSE	HETLOSS	PASS
659_bTo_pair	LY6G6E	6	31711771	31714065	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	LY6G6F	6	31706885	31710595	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	LY6G6F-LY6G6D	6	31706904	31717918	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	14	1	FALSE	HETLOSS	PASS
659_bTo_pair	LY6H	8	143157914	143160711	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	LY6K	8	142700111	142705127	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	LY75	2	159803355	159904749	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	38	7	FALSE	DIPLOID	PASS
659_bTo_pair	LY75-CD302	2	159771851	159904710	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	44	7	FALSE	DIPLOID	PASS
659_bTo_pair	LY86	6	6588108	6654983	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	LY9	1	160796074	160828261	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	LY96	8	73991352	74029087	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	5	0	FALSE	GAIN	PASS
659_bTo_pair	LYAR	4	4267701	4290169	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	9	0	FALSE	GAIN	PASS
659_bTo_pair	LYG1	2	99284238	99304742	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	LYG2	2	99242246	99255282	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	LYL1	19	13099033	13103161	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	LYN	8	55879813	56014168	FALSE	546	2.36949112078854	111	55880027	56014194	0.364342740527346	35	NA	0.364342740527346	35	NA	134167	NA	1	27	8	FALSE	AMP	PASS
659_bTo_pair	LYNX1	8	142771197	142777810	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	LYNX1-SLURP2	8	142764334	142778224	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	LYPD1	2	132644853	132671579	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	LYPD2	8	142750150	142752534	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	LYPD3	19	43460787	43465660	FALSE	1179	-0.582084941516902	26	42297317	43535595	NA	2	NA	NA	2	NA	1238278	NA	25	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LYPD4	19	41837074	41844697	FALSE	1177	-0.671885212726332	22	41354916	42250573	0.291335969972972	1	0	0.291335969972972	1	0	895657	1	32	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	LYPD5	19	43795929	43827206	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	LYPD6	2	149329985	149474148	FALSE	149	-0.454179855872301	30	147845197	157628657	1	2	1	1	2	1	9783460	1	30	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	LYPD6B	2	149038107	149215262	FALSE	149	-0.454179855872301	30	147845197	157628657	1	2	1	1	2	1	9783460	1	30	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	LYPD8	1	248718649	248755739	FALSE	88	-0.491817591117162	34	248559031	248918142	NA	2	NA	NA	2	NA	359111	NA	12	1	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LYPLA1	8	54046367	54102017	FALSE	543	-0.403572692824667	39	47962754	54147613	NA	2	NA	NA	2	NA	6184859	NA	18	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LYPLA2	1	23790970	23795539	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	LYPLAL1	1	219173844	219212865	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	LYRM1	16	20899868	20925006	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	LYRM2	6	89568144	89638753	FALSE	409	-0.443147941484883	34	89098919	90586786	NA	2	NA	NA	2	NA	1487867	NA	13	20	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LYRM4	6	5102593	5260939	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	LYRM7	5	131170810	131205426	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	LYRM9	17	27878314	27894752	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	LYSMD1	1	151159748	151165948	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	LYSMD2	15	51723011	51751585	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	LYSMD3	5	90515611	90529584	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	LYSMD4	15	99715697	99733561	FALSE	933	-0.918772702357227	12	98968746	101922991	0.365165917639896	1	0	0.365165917639896	1	0	2954245	1	21	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	LYST	1	235661041	235883640	FALSE	82	-0.550278310688863	27	235196044	241494870	1	2	1	1	2	1	6298826	1	22	69	0	FALSE	DIPLOID	PASS
659_bTo_pair	LYVE1	11	10556966	10611689	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	LYZ	12	69348341	69354234	FALSE	788	-0.518856535477169	29	68856633	69390188	NA	2	NA	NA	2	NA	533555	NA	4	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	LYZL1	10	29289061	29318328	FALSE	638	-0.441875687518437	32	27112127	31908266	0.365165917639896	2	0	0.365165917639896	2	0	4796139	2	18	5	1	FALSE	CNLOH	PASS
659_bTo_pair	LYZL2	10	30611779	30629762	FALSE	638	-0.441875687518437	32	27112127	31908266	0.365165917639896	2	0	0.365165917639896	2	0	4796139	2	18	5	3	FALSE	CNLOH	PASS
659_bTo_pair	LYZL4	3	42397078	42410600	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	LYZL6	17	35934518	35943699	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	4	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	LZIC	1	9922113	9943407	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	LZTFL1	3	45823316	45916042	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	LZTR1	22	20982013	20999038	TRUE	1245	1.49486089890038	90	20982486	21001309	0.364342740527346	18	NA	0.364342740527346	18	NA	18823	NA	2	35	1	FALSE	AMP	PASS
659_bTo_pair	LZTS1	8	20246165	20303963	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	LZTS2	10	100996618	101007836	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	10	0	FALSE	CNLOH	PASS
659_bTo_pair	LZTS3	20	3162617	3173592	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	M1AP	2	74557883	74648338	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	M6PR	12	8940363	8949955	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	MAATS1	3	119703022	119767102	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	17	0	FALSE	GAIN	PASS
659_bTo_pair	MAB21L1	13	35474182	35477209	FALSE	830	-0.745621963362667	19	32401848	39788354	0.365165917639896	1	0	0.365165917639896	1	0	7386506	1	30	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	MAB21L2	4	150581922	150584693	FALSE	300	-0.423460920061428	34	143186078	151174790	NA	2	NA	NA	2	NA	7988712	NA	32	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MAB21L3	1	116111755	116135240	FALSE	37	-0.781726809773331	16	114718157	116404480	0.365165917639896	1	0	0.365165917639896	1	0	1686323	1	12	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	MAB21L4	2	240886048	240896889	FALSE	194	-0.588828356865968	23	240025214	241817025	0.186356639256811	1	0	0.186356639256811	1	0	1791811	1	34	9	3	FALSE	HETLOSS	PASS
659_bTo_pair	MACC1	7	20134655	20217404	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	13	3	FALSE	GAIN	PASS
659_bTo_pair	MACF1	1	39081316	39487177	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	127	5	FALSE	DIPLOID	PASS
659_bTo_pair	MACO1	1	25430858	25500209	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	MACROD1	11	63998558	64166106	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	17	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	MACROD2	20	13995369	16053197	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	27	2	FALSE	DIPLOID	PASS
659_bTo_pair	MAD1L1	7	1815793	2233243	FALSE	450	-0.329551508654045	40	193185	2379492	0.308149309490068	3	1	0.308149309490068	3	1	2186307	2	26	19	2	FALSE	GAIN	PASS
659_bTo_pair	MAD2L1	4	120055608	120067074	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	MAD2L1BP	6	43629540	43640952	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	MAD2L2	1	11674480	11691650	TRUE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	19	3	FALSE	DIPLOID	PASS
659_bTo_pair	MADCAM1	19	489176	505342	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	8	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MADD	11	47269161	47330031	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	40	6	FALSE	DIPLOID	PASS
659_bTo_pair	MAEA	4	1289851	1340147	FALSE	272	-0.300029378244858	40	85877	1745020	0.308149309490068	3	1	0.308149309490068	3	1	1659143	2	29	10	0	FALSE	GAIN	PASS
659_bTo_pair	MAEL	1	166975582	167022214	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	MAF	16	79585843	79600714	TRUE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	MAF1	8	144104499	144107611	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	MAFA	8	143419182	143430406	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	MAFB	20	40685848	40689240	FALSE	1205	-0.619744376635615	23	37518926	41023791	0.186356639256811	1	0	0.186356639256811	1	0	3504865	1	19	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	MAFF	22	38200767	38216511	FALSE	1265	-0.53141020507802	29	38041114	39152464	NA	2	NA	NA	2	NA	1111350	NA	31	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MAFG	17	81918270	81927714	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	MAFK	7	1530714	1543043	FALSE	450	-0.329551508654045	40	193185	2379492	0.308149309490068	3	1	0.308149309490068	3	1	2186307	2	26	3	0	FALSE	GAIN	PASS
659_bTo_pair	MAG	19	35292125	35313804	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	MAGEA1	23	153179285	153183880	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	4	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	MAGEA10	23	152133310	152138578	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	5	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	MAGEA11	23	149688228	149717266	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	8	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	MAGEA12	23	152733779	152737669	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	4	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	MAGEA3	23	152698752	152702347	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	3	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	MAGEA4	23	151912509	151925170	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	4	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	MAGEA6	23	152766136	152769747	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	3	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	MAGEA8	23	149881141	149885835	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	4	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	MAGEB1	23	30243730	30252038	FALSE	1282	-0.198839212217093	48	28789325	33339312	0.365165917639896	3	NA	0.365165917639896	3	NA	4549987	NA	11	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MAGEB10	23	27807990	27823014	FALSE	1281	0.662601706370604	72	25004702	27981233	0.364342740527346	8	NA	0.364342740527346	8	NA	2976531	NA	9	5	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	MAGEB16	23	35798342	35803735	FALSE	1283	0.969154799392592	78	34129927	35802579	0.364342740527346	11	NA	0.364342740527346	11	NA	1672652	NA	4	4	4	TRUE	AMP	PASS
659_bTo_pair	MAGEB17	23	16167481	16171464	FALSE	1276	0.0763243231691416	59	15827382	20064777	0.308533751035793	5	NA	0.308533751035793	5	NA	4237395	NA	24	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	MAGEB18	23	26138343	26140735	FALSE	1281	0.662601706370604	72	25004702	27981233	0.364342740527346	8	NA	0.364342740527346	8	NA	2976531	NA	9	5	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	MAGEB2	23	30215560	30220089	FALSE	1282	-0.198839212217093	48	28789325	33339312	0.365165917639896	3	NA	0.365165917639896	3	NA	4549987	NA	11	4	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	MAGEB3	23	30230436	30237492	FALSE	1282	-0.198839212217093	48	28789325	33339312	0.365165917639896	3	NA	0.365165917639896	3	NA	4549987	NA	11	4	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	MAGEB4	23	30242052	30244193	FALSE	1282	-0.198839212217093	48	28789325	33339312	0.365165917639896	3	NA	0.365165917639896	3	NA	4549987	NA	11	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MAGEB5	23	26216169	26218270	FALSE	1281	0.662601706370604	72	25004702	27981233	0.364342740527346	8	NA	0.364342740527346	8	NA	2976531	NA	9	4	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	MAGEB6	23	26192440	26195646	FALSE	1281	0.662601706370604	72	25004702	27981233	0.364342740527346	8	NA	0.364342740527346	8	NA	2976531	NA	9	5	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	MAGEB6B	23	26160601	26161824	FALSE	1281	0.662601706370604	72	25004702	27981233	0.364342740527346	8	NA	0.364342740527346	8	NA	2976531	NA	9	5	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	MAGEC1	23	141903894	141909388	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	15	2	FALSE	INDETERMINATE	PASS
659_bTo_pair	MAGEC2	23	142202345	142205290	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	5	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	MAGEC3	23	141838316	141897832	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	12	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	MAGED1	23	51803007	51902357	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	17	1	FALSE	AMP (many states)	PASS
659_bTo_pair	MAGED2	23	54807599	54816012	FALSE	1303	0.0232492223836125	56	53426353	57488811	0.365165917639896	4	NA	0.365165917639896	4	NA	4062458	NA	32	15	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MAGEE1	23	76427724	76431353	FALSE	1318	1.90313360838225	101	76177725	77786243	0.364342740527346	25	NA	0.364342740527346	25	NA	1608518	NA	4	11	0	FALSE	AMP	PASS
659_bTo_pair	MAGEE2	23	75782988	75785236	FALSE	1317	0.217996879888221	62	71533297	76176924	0.364342740527346	5	NA	0.364342740527346	5	NA	4643627	NA	35	7	0	FALSE	AMP (many states)	PASS
659_bTo_pair	MAGEF1	3	184710367	184712002	FALSE	259	-0.260370931250901	44	183654025	185254015	0.345317016959666	3	1	0.345317016959666	3	1	1599990	2	31	4	2	FALSE	GAIN	PASS
659_bTo_pair	MAGEH1	23	55452105	55453566	FALSE	1303	0.0232492223836125	56	53426353	57488811	0.365165917639896	4	NA	0.365165917639896	4	NA	4062458	NA	32	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MAGEL2	15	23643549	23647867	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	MAGI1	3	65353525	66038834	FALSE	228	-0.860828429618822	13	64010871	69385924	0.365165917639896	1	0	0.365165917639896	1	0	5375053	1	16	32	0	FALSE	HETLOSS	PASS
659_bTo_pair	MAGI2	7	78017057	79453574	FALSE	471	1.07168140312194	81	78017261	79453701	0.364342740527346	12	NA	0.364342740527346	12	NA	1436440	NA	1	44	3	FALSE	AMP	PASS
659_bTo_pair	MAGI3	1	113390749	113685923	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	29	0	FALSE	HETLOSS	PASS
659_bTo_pair	MAGIX	23	49162564	49168483	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	7	0	FALSE	AMP (many states)	PASS
659_bTo_pair	MAGOH	1	53226892	53238610	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	MAGOHB	12	10604190	10613623	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	MAGT1	23	77826364	77895593	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	10	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	MAIP1	2	199955317	200008540	FALSE	164	-0.381871160033202	39	198084145	201228955	NA	2	NA	NA	2	NA	3144810	NA	19	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MAJIN	11	64937517	64972085	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	10	0	FALSE	GAIN	PASS
659_bTo_pair	MAK	6	10762723	10838555	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	MAK16	8	33484750	33501260	FALSE	528	-1.13877676700397	7	33372685	36932925	0.365165917639896	0	0	0.365165917639896	0	0	3560240	0	7	11	2	FALSE	HOMDEL	PASS
659_bTo_pair	MAL	2	95025677	95053996	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	MAL2	8	119165034	119245673	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	4	1	FALSE	GAIN	PASS
659_bTo_pair	MALL	2	110083870	110116566	FALSE	134	-0.415117895462051	39	108786846	111117811	NA	2	NA	NA	2	NA	2330965	NA	16	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MALRD1	10	19048771	19790401	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	46	7	FALSE	CNLOH	PASS
659_bTo_pair	MALSU1	7	23298739	23311729	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	5	0	FALSE	GAIN	PASS
659_bTo_pair	MALT1	18	58671386	58754477	FALSE	1106	1.59401085311912	93	58671518	58754372	0.364342740527346	19	NA	0.364342740527346	19	NA	82854	NA	1	39	1	FALSE	AMP	PASS
659_bTo_pair	MAMDC2	9	70043581	70226970	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	18	2	FALSE	DIPLOID	PASS
659_bTo_pair	MAMDC4	9	136850943	136860799	FALSE	631	-1.04738377038343	8	136673897	136866235	0.342391532111247	0	0	0.342391532111247	0	0	192338	0	15	25	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MAML1	5	179732850	179777286	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	MAML2	11	95976598	96343180	FALSE	717	-0.427991611956568	34	94512673	100992623	NA	2	NA	NA	2	NA	6479950	NA	19	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MAML3	4	139716753	140154184	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	17	1	FALSE	DIPLOID	PASS
659_bTo_pair	MAMLD1	23	150361422	150514178	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	17	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	MAMSTR	19	48712742	48719721	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	11	3	FALSE	HETLOSS	PASS
659_bTo_pair	MAN1A1	6	119177209	119349761	FALSE	421	-0.534093125771784	29	117482879	126348569	NA	2	NA	NA	2	NA	8865690	NA	29	14	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MAN1A2	1	117367449	117528872	FALSE	41	-0.835430281354834	13	117170115	117502903	0.365165917639896	1	0	0.365165917639896	1	0	332788	1	2	14	0	TRUE	HETLOSS	PASS
659_bTo_pair	MAN1B1	9	137086927	137109187	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	14	1	FALSE	HETLOSS	PASS
659_bTo_pair	MAN1C1	1	25617468	25786207	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	MAN2A1	5	109689366	109869625	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	24	0	FALSE	HETLOSS	PASS
659_bTo_pair	MAN2A2	15	90902218	90922584	FALSE	929	-0.700679172673924	22	90876261	92655591	0.291335969972972	1	0	0.291335969972972	1	0	1779330	1	13	24	2	FALSE	HETLOSS	PASS
659_bTo_pair	MAN2B1	19	12646511	12666742	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	24	0	FALSE	DIPLOID	PASS
659_bTo_pair	MAN2B2	4	6575175	6623362	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	21	2	FALSE	GAIN	PASS
659_bTo_pair	MAN2C1	15	75355207	75368630	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	26	2	FALSE	HETLOSS	PASS
659_bTo_pair	MANBA	4	102630770	102760994	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	MANBAL	20	37289638	37317260	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	MANEA	6	95577543	95609457	FALSE	410	1.70317160436212	96	93240013	95586454	0.364342740527346	21	NA	0.364342740527346	21	NA	2346441	NA	2	8	0	TRUE	AMP	PASS
659_bTo_pair	MANEAL	1	37793802	37801137	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	MANF	3	51385047	51389397	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	MANSC1	12	12326056	12350541	FALSE	751	-0.581914964256938	26	12079319	12707317	NA	2	NA	NA	2	NA	627998	NA	7	6	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MANSC4	12	27762738	27771276	FALSE	759	-0.427669886187443	30	25503824	31088026	1	2	1	1	2	1	5584202	1	28	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	MAOA	23	43654907	43746824	FALSE	1290	-0.118437036786996	53	41447899	44844689	0.273255132087987	4	NA	0.273255132087987	4	NA	3396790	NA	11	15	3	FALSE	GAIN (many states)	PASS
659_bTo_pair	MAOB	23	43766611	43882447	FALSE	1290	-0.118437036786996	53	41447899	44844689	0.273255132087987	4	NA	0.273255132087987	4	NA	3396790	NA	11	15	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MAP10	1	232804892	232808407	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	13	2	FALSE	HETLOSS	PASS
659_bTo_pair	MAP1A	15	43510958	43531620	FALSE	902	-0.672637691845835	22	43521582	44676538	0.291335969972972	1	0	0.291335969972972	1	0	1154956	1	21	33	0	FALSE	HETLOSS	PASS
659_bTo_pair	MAP1B	5	72107234	72209570	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	32	2	FALSE	HETLOSS	PASS
659_bTo_pair	MAP1LC3A	20	34546854	34560345	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	MAP1LC3B	16	87383995	87404779	FALSE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	MAP1LC3B2	12	116548105	116576448	FALSE	808	-0.531025796359709	27	115966146	120090026	1	2	1	1	2	1	4123880	1	23	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	MAP1LC3C	1	241995490	241999073	FALSE	84	-0.392646983169906	39	241532515	243426393	NA	2	NA	NA	2	NA	1893878	NA	10	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MAP1S	19	17719242	17734516	FALSE	1155	-0.249305971018279	46	17273895	17821522	0.298322295679939	3	NA	0.298322295679939	3	NA	547627	NA	25	17	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MAP2	2	209424058	209734118	FALSE	170	-0.412902611462209	39	208271511	209825900	NA	2	NA	NA	2	NA	1554389	NA	4	29	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MAP2K1	15	66386817	66492312	FALSE	909	1.03264997998535	81	66386896	66491669	0.364342740527346	12	NA	0.364342740527346	12	NA	104773	NA	2	25	0	FALSE	AMP	PASS
659_bTo_pair	MAP2K2	19	4090321	4124129	FALSE	1123	1.2973896190232	86	4043292	4164654	0.364342740527346	15	NA	0.364342740527346	15	NA	121362	NA	3	22	3	FALSE	AMP	PASS
659_bTo_pair	MAP2K3	17	21284672	21315240	FALSE	1017	-0.613455041037862	26	21198868	21303244	NA	2	NA	NA	2	NA	104376	NA	3	12	6	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	MAP2K4	17	12020824	12143830	TRUE	1008	0.531962646301434	68	12020949	12148936	0.364342740527346	7	NA	0.364342740527346	7	NA	127987	NA	1	33	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	MAP2K5	15	67542709	67807123	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	MAP2K6	17	69414698	69553861	FALSE	1073	-0.526841420951416	29	68868095	70175063	NA	2	NA	NA	2	NA	1306968	NA	8	12	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MAP2K7	19	7903843	7914478	FALSE	1131	-0.427137871910925	34	7870993	7912384	NA	2	NA	NA	2	NA	41391	NA	3	12	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MAP3K1	5	56815574	56896152	TRUE	320	1.04150111664216	81	56815738	56901251	0.364342740527346	12	NA	0.364342740527346	12	NA	85513	NA	1	44	5	FALSE	AMP	PASS
659_bTo_pair	MAP3K10	19	40191744	40215575	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	16	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MAP3K11	11	65597755	65615382	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	15	0	FALSE	GAIN	PASS
659_bTo_pair	MAP3K12	12	53479669	53500063	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	MAP3K13	3	185282941	185489097	FALSE	260	1.51389216559589	90	185282976	185489114	0.364342740527346	18	NA	0.364342740527346	18	NA	206138	NA	2	53	8	FALSE	AMP	PASS
659_bTo_pair	MAP3K14	17	45263119	45317145	FALSE	1045	1.60812106202441	93	45263124	45395646	0.364342740527346	19	NA	0.364342740527346	19	NA	132522	NA	2	28	2	FALSE	AMP	PASS
659_bTo_pair	MAP3K15	23	19360056	19515261	FALSE	1276	0.0763243231691416	59	15827382	20064777	0.308533751035793	5	NA	0.308533751035793	5	NA	4237395	NA	24	29	0	FALSE	AMP (many states)	PASS
659_bTo_pair	MAP3K19	2	134964491	135047468	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	24	5	FALSE	DIPLOID	PASS
659_bTo_pair	MAP3K2	2	127298730	127388465	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	MAP3K20	2	173075435	173268010	FALSE	153	-0.469039793655258	34	172736055	177217715	NA	2	NA	NA	2	NA	4481660	NA	28	23	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MAP3K21	1	233327768	233385148	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	17	1	FALSE	HETLOSS	PASS
659_bTo_pair	MAP3K3	17	63622415	63696303	FALSE	1064	-0.419094292936043	39	61867575	63873599	NA	2	NA	NA	2	NA	2006024	NA	24	18	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MAP3K4	6	160991727	161117385	FALSE	445	0.567075882616504	69	160991940	163563366	0.364342740527346	8	NA	0.364342740527346	8	NA	2571426	NA	5	37	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	MAP3K5	6	136557047	136792518	FALSE	427	-0.614116824618693	26	135285680	137161691	NA	2	NA	NA	2	NA	1876011	NA	10	31	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MAP3K6	1	27355184	27366892	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	28	1	FALSE	DIPLOID	PASS
659_bTo_pair	MAP3K7	6	90513573	90587045	FALSE	409	-0.443147941484883	34	89098919	90586786	NA	2	NA	NA	2	NA	1487867	NA	13	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MAP3K7CL	21	29077471	29175889	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	MAP3K8	10	30433937	30461833	FALSE	638	-0.441875687518437	32	27112127	31908266	0.365165917639896	2	0	0.365165917639896	2	0	4796139	2	18	9	0	FALSE	CNLOH	PASS
659_bTo_pair	MAP3K9	14	70722526	70809534	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	22	2	FALSE	DIPLOID	PASS
659_bTo_pair	MAP4	3	47850690	48089272	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	25	0	FALSE	HETLOSS	PASS
659_bTo_pair	MAP4K1	19	38587641	38618882	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	29	0	FALSE	HETLOSS	PASS
659_bTo_pair	MAP4K2	11	64784914	64803241	FALSE	704	-0.387292846909492	39	64556376	64803187	NA	2	NA	NA	2	NA	246811	NA	7	27	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MAP4K3	2	39249266	39437312	FALSE	104	-0.491151156674762	34	39178660	42057603	NA	2	NA	NA	2	NA	2878943	NA	7	35	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MAP4K4	2	101696850	101894689	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	33	0	FALSE	DIPLOID	PASS
659_bTo_pair	MAP4K5	14	50418501	50561126	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	33	0	FALSE	DIPLOID	PASS
659_bTo_pair	MAP6	11	75586918	75669120	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	12	0	FALSE	GAIN	PASS
659_bTo_pair	MAP6D1	3	183815876	183825594	FALSE	259	-0.260370931250901	44	183654025	185254015	0.345317016959666	3	1	0.345317016959666	3	1	1599990	2	31	4	0	FALSE	GAIN	PASS
659_bTo_pair	MAP7	6	136342281	136550819	FALSE	427	-0.614116824618693	26	135285680	137161691	NA	2	NA	NA	2	NA	1876011	NA	10	22	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MAP7D1	1	36155579	36180849	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	20	2	FALSE	DIPLOID	PASS
659_bTo_pair	MAP7D2	23	20006713	20116917	FALSE	1276	0.0763243231691416	59	15827382	20064777	0.308533751035793	5	NA	0.308533751035793	5	NA	4237395	NA	24	18	0	TRUE	AMP (many states)	PASS
659_bTo_pair	MAP7D3	23	136213220	136256482	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	21	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MAP9	4	155342658	155376970	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	MAPK1	22	21754500	21867680	FALSE	1247	1.39716358593011	87	21694782	21867333	0.364342740527346	16	NA	0.364342740527346	16	NA	172551	NA	3	26	8	FALSE	AMP	PASS
659_bTo_pair	MAPK10	4	85990007	86594625	FALSE	291	-0.458701040497953	34	83536708	87613131	NA	2	NA	NA	2	NA	4076423	NA	17	20	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MAPK11	22	50263713	50270767	FALSE	1271	-0.350898193716427	41	45922979	50285791	0.284729887459054	3	0	0.284729887459054	3	0	4362812	3	30	10	3	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	MAPK12	22	50245450	50261825	FALSE	1271	-0.350898193716427	41	45922979	50285791	0.284729887459054	3	0	0.284729887459054	3	0	4362812	3	30	30	6	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	MAPK13	6	36127809	36144524	FALSE	393	-0.47521086997284	30	35476361	36677919	1	2	1	1	2	1	1201558	1	21	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	MAPK14	6	36027677	36111236	FALSE	393	-0.47521086997284	30	35476361	36677919	1	2	1	1	2	1	1201558	1	21	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	MAPK15	8	143716259	143722458	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	MAPK1IP1L	14	55051631	55070192	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	MAPK3	16	30114105	30123506	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	MAPK4	18	50560078	50731824	FALSE	1103	-0.712987700962632	19	48029643	51023578	0.365165917639896	1	0	0.365165917639896	1	0	2993935	1	20	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	MAPK6	15	51952106	52067372	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	22	1	FALSE	HETLOSS	PASS
659_bTo_pair	MAPK7	17	19377721	19383544	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	13	0	FALSE	CNLOH	PASS
659_bTo_pair	MAPK8	10	48306639	48439360	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	12	0	FALSE	CNLOH	PASS
659_bTo_pair	MAPK8IP1	11	45885651	45906465	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	MAPK8IP2	22	50600685	50613981	FALSE	1272	-0.260847831900416	46	50286270	50731222	0.298322295679939	3	NA	0.298322295679939	3	NA	444952	NA	19	16	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MAPK8IP3	16	1706183	1770317	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	34	5	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MAPK9	5	180233143	180292099	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	MAPKAP1	9	125437393	125707234	FALSE	619	-0.820686000870706	14	125203036	127778681	0.365165917639896	1	0	0.365165917639896	1	0	2575645	1	23	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	MAPKAPK2	1	206684944	206734283	FALSE	69	-0.48847123055109	34	205798087	206732058	NA	2	NA	NA	2	NA	933971	NA	14	10	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	MAPKAPK3	3	50611520	50649297	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	MAPKAPK5	12	111841978	111902238	FALSE	802	-0.463173510714366	34	111455064	112408626	NA	2	NA	NA	2	NA	953562	NA	12	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MAPKBP1	15	41774434	41827855	FALSE	896	-0.768052081406389	19	41775359	41841304	0.365165917639896	1	0	0.365165917639896	1	0	65945	1	4	37	2	FALSE	HETLOSS	PASS
659_bTo_pair	MAPRE1	20	32819893	32850405	FALSE	1202	0.844808231617173	76	32358370	32836730	0.364342740527346	10	NA	0.364342740527346	10	NA	478360	NA	7	6	0	TRUE	AMP	PASS
659_bTo_pair	MAPRE2	18	34976928	35143470	FALSE	1095	-0.699288883997088	20	33734323	36718652	0.365165917639896	1	0	0.365165917639896	1	0	2984329	1	17	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	MAPRE3	2	26970612	27027196	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	MAPT	17	45894382	46028334	FALSE	1046	-0.746772159255206	19	45395806	47696360	0.365165917639896	1	0	0.365165917639896	1	0	2300554	1	26	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	MARC1	1	220786759	220819657	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	MARC2	1	220748225	220784815	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	MARCH1	4	163524298	164384050	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	MARCH10	17	62701314	62808344	FALSE	1064	-0.419094292936043	39	61867575	63873599	NA	2	NA	NA	2	NA	2006024	NA	24	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MARCH11	5	16067139	16180762	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	6	0	FALSE	GAIN	PASS
659_bTo_pair	MARCH2	19	8413270	8439017	FALSE	1132	-0.583194501817822	26	7916513	8843246	NA	2	NA	NA	2	NA	926733	NA	25	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MARCH3	5	126867714	127030808	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	MARCH4	2	216257865	216372027	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	MARCH5	10	92291163	92353964	FALSE	662	-0.410954559094016	36	89715119	94762760	0.365165917639896	2	0	0.365165917639896	2	0	5047641	2	33	6	0	FALSE	CNLOH	PASS
659_bTo_pair	MARCH6	5	10353703	10440388	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	25	0	FALSE	GAIN	PASS
659_bTo_pair	MARCH7	2	159712457	159771027	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	MARCH8	10	45454585	45594906	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	11	2	FALSE	CNLOH	PASS
659_bTo_pair	MARCH9	12	57755098	57760407	FALSE	785	1.00272948497916	80	57748192	57766041	0.364342740527346	12	NA	0.364342740527346	12	NA	17849	NA	4	8	0	FALSE	AMP	PASS
659_bTo_pair	MARCKS	6	113857362	113863471	FALSE	415	-0.653130566834058	22	112072832	113860548	0.291335969972972	1	0	0.291335969972972	1	0	1787716	1	6	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	MARCKSL1	1	32333832	32336379	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	MARCO	2	118942166	118994660	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	MARCOL	5	148221650	148243580	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	MARF1	16	15594386	15643166	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	31	0	FALSE	DIPLOID	PASS
659_bTo_pair	MARK1	1	220528183	220664461	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	MARK2	11	63838928	63911019	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	22	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MARK3	14	103385392	103503831	FALSE	880	-0.612786833130899	26	102922742	103500099	NA	2	NA	NA	2	NA	577357	NA	7	19	2	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	MARK4	19	45079288	45305283	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	67	1	FALSE	HETLOSS	PASS
659_bTo_pair	MARS	12	57475445	57517569	FALSE	782	-0.458497547164839	34	57472671	57623111	NA	2	NA	NA	2	NA	150440	NA	11	40	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MARS2	2	197705369	197708387	FALSE	163	-0.632896131155704	26	197453631	198083720	NA	2	NA	NA	2	NA	630089	NA	9	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MARVELD1	10	97713173	97718152	FALSE	664	-0.371799025630062	36	96955124	97864220	0.365165917639896	2	0	0.365165917639896	2	0	909096	2	23	2	1	FALSE	CNLOH	PASS
659_bTo_pair	MARVELD2	5	69415065	69444330	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	MARVELD3	16	71626161	71642114	FALSE	983	-0.428709389755029	30	71178941	72171154	1	2	1	1	2	1	992213	1	22	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	MAS1	6	159906690	159916530	FALSE	444	-0.505238631103688	30	158776425	160753038	1	2	1	1	2	1	1976613	1	17	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	MAS1L	6	29486697	29487956	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	MASP1	3	187217285	187292022	FALSE	265	-0.393829618143586	39	186790414	187702028	NA	2	NA	NA	2	NA	911614	NA	9	21	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MASP2	1	11026523	11047233	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	MAST1	19	12833951	12874951	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	35	4	FALSE	DIPLOID	PASS
659_bTo_pair	MAST2	1	45786987	46036124	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	39	0	FALSE	DIPLOID	PASS
659_bTo_pair	MAST3	19	18097793	18151692	FALSE	1157	-0.332253297419471	43	17859980	18149705	0.192136715055622	3	NA	0.192136715055622	3	NA	289725	NA	7	32	6	FALSE	GAIN (many states)	PASS
659_bTo_pair	MAST4	5	66596361	67169595	FALSE	323	-0.645106866010582	25	58495036	67196614	0.365165917639896	1	0	0.365165917639896	1	0	8701578	1	31	52	2	FALSE	HETLOSS	PASS
659_bTo_pair	MASTL	10	27154824	27186924	FALSE	638	-0.441875687518437	32	27112127	31908266	0.365165917639896	2	0	0.365165917639896	2	0	4796139	2	18	18	3	FALSE	CNLOH	PASS
659_bTo_pair	MAT1A	10	80271820	80289684	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	9	0	FALSE	CNLOH	PASS
659_bTo_pair	MAT2A	2	85539165	85545280	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	MAT2B	5	163503114	163519336	FALSE	356	-0.773912908266316	17	162095550	171298806	0.365165917639896	1	0	0.365165917639896	1	0	9203256	1	21	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	MATK	19	3777970	3802129	FALSE	1122	-0.653400653967241	21	3157829	4037863	0.140309795179477	0	0	0.140309795179477	0	0	880034	0	27	14	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MATN1	1	30711277	30723587	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	MATN2	8	97868840	98036716	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	21	5	FALSE	GAIN	PASS
659_bTo_pair	MATN3	2	19992111	20012694	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	10	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MATN4	20	45293445	45308529	FALSE	1211	-0.249905145449482	46	45110461	45330545	0.298322295679939	3	NA	0.298322295679939	3	NA	220084	NA	9	14	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MATR3	5	139273752	139331677	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	19	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MAU2	19	19320681	19358755	FALSE	1161	-0.292613860626304	46	19182590	19465611	0.298322295679939	3	NA	0.298322295679939	3	NA	283021	NA	10	20	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MAVS	20	3846799	3876123	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	MAX	14	65006174	65102695	TRUE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	37	0	TRUE	DIPLOID	PASS
659_bTo_pair	MAZ	16	29806106	29811164	FALSE	965	-0.735005669796309	19	28989573	29982749	0.365165917639896	1	0	0.365165917639896	1	0	993176	1	25	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	MB	22	35606764	35637951	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	4	0	FALSE	CNLOH	PASS
659_bTo_pair	MB21D2	3	192796815	192918161	FALSE	269	-0.263219948753545	44	189957970	195888442	0.345317016959666	3	1	0.345317016959666	3	1	5930472	2	31	6	0	FALSE	GAIN	PASS
659_bTo_pair	MBD1	18	50266882	50281774	FALSE	1103	-0.712987700962632	19	48029643	51023578	0.365165917639896	1	0	0.365165917639896	1	0	2993935	1	20	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	MBD2	18	54151601	54224788	FALSE	1105	-0.785555027616249	16	52752095	58670682	0.365165917639896	1	0	0.365165917639896	1	0	5918587	1	19	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	MBD3	19	1573596	1592801	FALSE	1116	-0.668595541323287	22	1229189	1605424	0.291335969972972	1	0	0.291335969972972	1	0	376235	1	21	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	MBD3L1	19	8832398	8843340	FALSE	1132	-0.583194501817822	26	7916513	8843246	NA	2	NA	NA	2	NA	926733	NA	25	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MBD3L2	19	7049321	7051735	FALSE	1128	-0.566723388755247	23	6665178	7083719	0.186356639256811	1	0	0.186356639256811	1	0	418541	1	13	1	0	FALSE	HETLOSS	PASS
659_bTo_pair	MBD3L2B	19	7018969	7021450	FALSE	1128	-0.566723388755247	23	6665178	7083719	0.186356639256811	1	0	0.186356639256811	1	0	418541	1	13	1	0	FALSE	HETLOSS	PASS
659_bTo_pair	MBD3L3	19	7056209	7058640	FALSE	1128	-0.566723388755247	23	6665178	7083719	0.186356639256811	1	0	0.186356639256811	1	0	418541	1	13	3	2	FALSE	HETLOSS	PASS
659_bTo_pair	MBD3L4	19	7037748	7040179	FALSE	1128	-0.566723388755247	23	6665178	7083719	0.186356639256811	1	0	0.186356639256811	1	0	418541	1	13	1	0	FALSE	HETLOSS	PASS
659_bTo_pair	MBD3L5	19	7030578	7033011	FALSE	1128	-0.566723388755247	23	6665178	7083719	0.186356639256811	1	0	0.186356639256811	1	0	418541	1	13	1	0	FALSE	HETLOSS	PASS
659_bTo_pair	MBD4	3	129430944	129440179	FALSE	240	-0.311262736248051	40	128620554	130098189	0.308149309490068	3	1	0.308149309490068	3	1	1477635	2	22	12	2	FALSE	GAIN	PASS
659_bTo_pair	MBD5	2	148021011	148516971	FALSE	149	-0.454179855872301	30	147845197	157628657	1	2	1	1	2	1	9783460	1	30	24	0	FALSE	DIPLOID	PASS
659_bTo_pair	MBD6	12	57520710	57530148	FALSE	782	-0.458497547164839	34	57472671	57623111	NA	2	NA	NA	2	NA	150440	NA	11	18	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MBIP	14	36298558	36320676	FALSE	854	-0.32038786389426	43	35534938	36513130	0.192136715055622	3	NA	0.192136715055622	3	NA	978192	NA	5	9	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	MBL2	10	52765380	52771700	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	5	1	FALSE	CNLOH	PASS
659_bTo_pair	MBLAC1	7	100126694	100128498	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	MBLAC2	5	90458203	90474768	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	MBNL1	3	152243828	152465780	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	10	0	FALSE	GAIN	PASS
659_bTo_pair	MBNL2	13	97221434	97394120	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	8	0	FALSE	CNLOH	PASS
659_bTo_pair	MBNL3	23	132369317	132489968	FALSE	1335	0.100243493544559	59	130066940	134244999	0.308533751035793	5	NA	0.308533751035793	5	NA	4178059	NA	21	11	0	FALSE	AMP (many states)	PASS
659_bTo_pair	MBOAT1	6	20102145	20212399	FALSE	370	-0.377368469329801	39	15246548	20212233	NA	2	NA	NA	2	NA	4965685	NA	18	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MBOAT2	2	8852690	9003813	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	MBOAT4	8	30131824	30144686	FALSE	524	-0.752404429217175	19	29337070	31032666	0.365165917639896	1	0	0.365165917639896	1	0	1695596	1	13	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	MBOAT7	19	54173412	54189882	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	MBP	18	76978827	77133683	FALSE	1113	-0.883471952658051	12	75410842	80247341	0.365165917639896	1	0	0.365165917639896	1	0	4836499	1	17	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	MBTD1	17	51177425	51260163	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MBTPS1	16	84053761	84116906	FALSE	987	-0.578642888038652	23	81999201	85806436	0.186356639256811	1	0	0.186356639256811	1	0	3807235	1	31	24	3	FALSE	HETLOSS	PASS
659_bTo_pair	MBTPS2	23	21839636	21885424	FALSE	1278	-0.021616497728569	55	20155391	23935235	0.328696605851359	4	NA	0.328696605851359	4	NA	3779844	NA	16	18	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	MC1R	16	89912119	89920977	FALSE	993	-0.673014862380027	22	89828600	89919507	0.291335969972972	1	0	0.291335969972972	1	0	90907	1	4	4	0	TRUE	HETLOSS	PASS
659_bTo_pair	MC2R	18	13882044	13915707	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	4	0	FALSE	GAIN	PASS
659_bTo_pair	MC3R	20	56248732	56249815	FALSE	1220	-1.01213938040689	8	53953522	56248828	0.342391532111247	0	0	0.342391532111247	0	0	2295306	0	6	5	0	TRUE	HOMDEL	PASS
659_bTo_pair	MC4R	18	60371062	60372775	FALSE	1108	0.428388383073274	66	59697326	60372043	0.364342740527346	7	NA	0.364342740527346	7	NA	674717	NA	3	4	1	TRUE	INDETERMINATE	PASS
659_bTo_pair	MC5R	18	13824149	13827323	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	4	0	FALSE	GAIN	PASS
659_bTo_pair	MCAM	11	119308529	119321521	FALSE	729	1.62229064559102	93	119206423	119312385	0.364342740527346	20	NA	0.364342740527346	20	NA	105962	NA	2	16	1	TRUE	AMP	PASS
659_bTo_pair	MCAT	22	43132206	43143394	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	6	0	FALSE	CNLOH	PASS
659_bTo_pair	MCC	5	113022099	113488830	FALSE	331	-0.706980197323045	20	112861366	122075379	0.365165917639896	1	0	0.365165917639896	1	0	9214013	1	31	28	4	FALSE	HETLOSS	PASS
659_bTo_pair	MCCC1	3	183015218	183116075	FALSE	257	-0.467752053645755	34	183015432	183427906	NA	2	NA	NA	2	NA	412474	NA	4	19	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MCCC2	5	71587288	71658704	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	MCCD1	6	31528717	31530232	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	MCEE	2	71109684	71130239	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	MCEMP1	19	7676628	7679826	FALSE	1130	-0.690953718254595	21	7440128	7870576	0.140309795179477	0	0	0.140309795179477	0	0	430448	0	25	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MCF2	23	139581770	139708227	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	30	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	MCF2L	13	112894378	113099739	FALSE	844	-0.576217954819194	24	110150427	113263496	0.359751661895656	2	0	0.359751661895656	2	0	3113069	2	19	36	3	FALSE	CNLOH	PASS
659_bTo_pair	MCF2L2	3	183178043	183428778	FALSE	257	-0.467752053645755	34	183015432	183427906	NA	2	NA	NA	2	NA	412474	NA	4	35	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MCFD2	2	46901870	46941855	FALSE	108	-0.751130758275331	19	46479657	47176488	0.365165917639896	1	0	0.365165917639896	1	0	696831	1	11	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	MCHR1	22	40678750	40682814	FALSE	1267	-0.448885551917151	34	39313004	41087696	NA	2	NA	NA	2	NA	1774692	NA	24	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MCHR2	6	99919910	99994247	FALSE	411	-0.455063723695114	34	95586870	106069771	NA	2	NA	NA	2	NA	10482901	NA	27	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MCIDAS	5	55219614	55227315	FALSE	319	-0.764156631411702	19	50399919	56556187	0.365165917639896	1	0	0.365165917639896	1	0	6156268	1	28	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	MCL1	1	150574551	150579738	FALSE	46	2.04541562084657	105	150560119	150579623	0.364342740527346	28	NA	0.364342740527346	28	NA	19504	NA	2	17	0	FALSE	AMP	PASS
659_bTo_pair	MCM10	10	13161554	13211104	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	20	0	FALSE	CNLOH	PASS
659_bTo_pair	MCM2	3	127598223	127622436	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	20	2	FALSE	GAIN	PASS
659_bTo_pair	MCM3	6	52264009	52284881	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	19	1	FALSE	DIPLOID	PASS
659_bTo_pair	MCM3AP	21	46235126	46286297	FALSE	1239	-0.568555801579827	23	44960223	46664365	0.186356639256811	1	0	0.186356639256811	1	0	1704142	1	18	38	0	FALSE	HETLOSS	PASS
659_bTo_pair	MCM4	8	47960185	47978160	FALSE	542	0.757621520920055	74	47737305	47962299	0.364342740527346	9	NA	0.364342740527346	9	NA	224994	NA	3	18	0	TRUE	INDETERMINATE	PASS
659_bTo_pair	MCM5	22	35400063	35425430	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	18	0	FALSE	CNLOH	PASS
659_bTo_pair	MCM6	2	135839626	135876426	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	MCM7	7	100092728	100101940	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	17	1	FALSE	HETLOSS	PASS
659_bTo_pair	MCM8	20	5950652	5998977	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	18	1	FALSE	HETLOSS	PASS
659_bTo_pair	MCM9	6	118813442	118935162	FALSE	421	-0.534093125771784	29	117482879	126348569	NA	2	NA	NA	2	NA	8865690	NA	29	23	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MCMBP	10	119829404	119892556	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	16	4	FALSE	CNLOH	PASS
659_bTo_pair	MCMDC2	8	66870749	66922048	FALSE	550	-0.186881774239562	48	60208949	67746087	0.365165917639896	3	NA	0.365165917639896	3	NA	7537138	NA	33	15	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MCOLN1	19	7522626	7534009	FALSE	1130	-0.690953718254595	21	7440128	7870576	0.140309795179477	0	0	0.140309795179477	0	0	430448	0	25	14	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MCOLN2	1	84925583	84997113	FALSE	27	-0.365760579101575	39	77969065	85252731	NA	2	NA	NA	2	NA	7283666	NA	23	14	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MCOLN3	1	85018082	85048499	FALSE	27	-0.365760579101575	39	77969065	85252731	NA	2	NA	NA	2	NA	7283666	NA	23	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MCPH1	8	6406592	6648504	FALSE	510	-0.906181747703467	12	166288	7823395	0.365165917639896	1	0	0.365165917639896	1	0	7657107	1	48	30	4	FALSE	HETLOSS	PASS
659_bTo_pair	MCRIP1	17	81822361	81833302	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	MCRIP2	16	636817	648474	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MCRS1	12	49556544	49568153	FALSE	770	-0.500134310902258	34	49065087	50081631	NA	2	NA	NA	2	NA	1016544	NA	25	18	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MCTP1	5	94703741	95284575	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	26	1	FALSE	HETLOSS	PASS
659_bTo_pair	MCTP2	15	94231538	94483952	FALSE	931	-1.05463640239282	8	93072946	98485928	0.342391532111247	0	0	0.342391532111247	0	0	5412982	0	6	25	1	FALSE	HOMDEL	PASS
659_bTo_pair	MCTS1	23	120594010	120621074	FALSE	1328	0.070674287613007	59	119603543	121049335	0.308533751035793	5	NA	0.308533751035793	5	NA	1445792	NA	34	7	0	FALSE	AMP (many states)	PASS
659_bTo_pair	MCU	10	72692131	72887694	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	8	0	FALSE	CNLOH	PASS
659_bTo_pair	MCUB	4	109560205	109688726	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	MCUR1	6	13786557	13814568	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	MDC1	6	30699807	30717889	FALSE	379	-0.524744136561063	27	30546321	31270541	1	2	1	1	2	1	724220	1	30	31	0	FALSE	DIPLOID	PASS
659_bTo_pair	MDFI	6	41636882	41654246	FALSE	397	-0.509151429367598	27	37213022	41687167	1	2	1	1	2	1	4474145	1	33	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	MDFIC	7	114922154	115019202	FALSE	488	-0.464127371400283	34	107070260	116559206	NA	2	NA	NA	2	NA	9488946	NA	33	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MDGA1	6	37630679	37699306	FALSE	397	-0.509151429367598	27	37213022	41687167	1	2	1	1	2	1	4474145	1	33	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	MDGA2	14	46840092	47674954	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	21	1	FALSE	DIPLOID	PASS
659_bTo_pair	MDH1	2	63588609	63607197	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	MDH1B	2	206737763	206765547	FALSE	168	-0.499602545595775	30	203936898	208231285	1	2	1	1	2	1	4294387	1	25	13	2	FALSE	DIPLOID	PASS
659_bTo_pair	MDH2	7	76048051	76067508	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	9	2	FALSE	DIPLOID	PASS
659_bTo_pair	MDK	11	46380756	46383837	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	MDM1	12	68272443	68332381	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	21	5	FALSE	DIPLOID	PASS
659_bTo_pair	MDM2	12	68808176	68850686	FALSE	787	2.20514282893682	108	68808384	68845458	0.364342740527346	31	NA	0.364342740527346	31	NA	37074	NA	2	32	2	FALSE	AMP	PASS
659_bTo_pair	MDM4	1	204516379	204558120	FALSE	65	0.346765491902278	65	204411239	204617919	0.364342740527346	6	NA	0.364342740527346	6	NA	206680	NA	4	36	6	FALSE	AMP (many states)	PASS
659_bTo_pair	MDN1	6	89642499	89819723	FALSE	409	-0.443147941484883	34	89098919	90586786	NA	2	NA	NA	2	NA	1487867	NA	13	110	4	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MDP1	14	24213937	24216070	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	ME1	6	83210389	83431071	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	ME2	18	50878734	50954257	FALSE	1103	-0.712987700962632	19	48029643	51023578	0.365165917639896	1	0	0.365165917639896	1	0	2993935	1	20	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	ME3	11	86441108	86672636	FALSE	714	-0.230278951577934	46	86306357	90211282	0.298322295679939	3	NA	0.298322295679939	3	NA	3904925	NA	21	14	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MEA1	6	43011143	43016868	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	MEAF6	1	37492575	37514774	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	MECOM	3	169083499	169663618	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	25	3	FALSE	GAIN	PASS
659_bTo_pair	MECP2	23	154021573	154137103	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	9	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	MECR	1	29192873	29230942	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	11	3	FALSE	DIPLOID	PASS
659_bTo_pair	MED1	17	39404285	39451286	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	28	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MED10	5	6371881	6378594	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	4	0	FALSE	GAIN	PASS
659_bTo_pair	MED11	17	4731428	4733610	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	MED12	23	71118556	71142454	TRUE	1314	1.60568530066658	93	71113596	71254970	0.364342740527346	19	NA	0.364342740527346	19	NA	141374	NA	4	49	0	FALSE	AMP	PASS
659_bTo_pair	MED12L	3	151085697	151437072	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	71	8	FALSE	GAIN	PASS
659_bTo_pair	MED13	17	61942605	62065282	FALSE	1064	-0.419094292936043	39	61867575	63873599	NA	2	NA	NA	2	NA	2006024	NA	24	39	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MED13L	12	115953872	116277719	FALSE	807	1.87405892104781	100	114670331	115963450	0.364342740527346	24	NA	0.364342740527346	24	NA	1293119	NA	2	39	0	TRUE	AMP	PASS
659_bTo_pair	MED14	23	40648306	40735858	FALSE	1288	0.0977543403034234	59	40162702	41232378	0.308533751035793	5	NA	0.308533751035793	5	NA	1069676	NA	6	34	1	FALSE	AMP (many states)	PASS
659_bTo_pair	MED15	22	20495913	20587632	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	20	0	FALSE	CNLOH	PASS
659_bTo_pair	MED16	19	867630	893218	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	19	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MED17	11	93784227	93814963	FALSE	715	-0.44311716102168	34	90214063	94410681	NA	2	NA	NA	2	NA	4196618	NA	16	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MED18	1	28329002	28335967	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	MED19	11	57703714	57712323	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	7	0	FALSE	GAIN	PASS
659_bTo_pair	MED20	6	41905354	41921139	FALSE	399	-0.575359055127692	26	41736131	41931766	NA	2	NA	NA	2	NA	195635	NA	9	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MED21	12	27022546	27066343	FALSE	759	-0.427669886187443	30	25503824	31088026	1	2	1	1	2	1	5584202	1	28	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	MED22	9	133338323	133348131	FALSE	627	-0.867007674319489	12	132986776	134157867	0.365165917639896	1	0	0.365165917639896	1	0	1171091	1	28	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	MED23	6	131573966	131628229	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	43	0	FALSE	DIPLOID	PASS
659_bTo_pair	MED24	17	40019097	40061215	FALSE	1030	-0.735138103765796	19	39868404	40278196	0.365165917639896	1	0	0.365165917639896	1	0	409792	1	14	27	4	FALSE	HETLOSS	PASS
659_bTo_pair	MED25	19	49818279	49840383	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	MED26	19	16574907	16629062	FALSE	1154	-0.533888138892061	27	16361883	17271664	1	2	1	1	2	1	909781	1	23	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	MED27	9	131860107	132079908	FALSE	625	-0.794391185935477	14	131261330	132889947	0.365165917639896	1	0	0.365165917639896	1	0	1628617	1	17	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	MED28	4	17614631	17634105	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	6	0	TRUE	GAIN	PASS
659_bTo_pair	MED29	19	39391303	39400637	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MED30	8	117520713	117540262	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	4	2	FALSE	GAIN	PASS
659_bTo_pair	MED31	17	6643315	6651634	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	MED4	13	48053323	48095131	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	MED6	14	70581257	70600690	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	MED7	5	157137412	157159019	FALSE	353	-0.698571741790457	22	157138801	161546576	0.291335969972972	1	0	0.291335969972972	1	0	4407775	1	29	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	MED8	1	43383917	43389808	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	MED9	17	17476986	17493226	FALSE	1014	-0.559544539688918	26	17247059	18028347	NA	2	NA	NA	2	NA	781288	NA	10	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MEDAG	13	30906191	30925572	FALSE	828	-0.893717680890687	13	28659152	32311865	0.365165917639896	1	0	0.365165917639896	1	0	3652713	1	17	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	MEF2A	15	99565417	99716466	FALSE	933	-0.918772702357227	12	98968746	101922991	0.365165917639896	1	0	0.365165917639896	1	0	2954245	1	21	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	MEF2B	19	19145568	19170289	FALSE	1160	2.36156194446054	111	19145673	19180708	0.364342740527346	35	NA	0.364342740527346	35	NA	35035	NA	3	12	1	FALSE	AMP	PASS
659_bTo_pair	MEF2C	5	88717117	88904257	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	MEF2D	1	156463727	156500828	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	13	2	FALSE	DIPLOID	PASS
659_bTo_pair	MEFV	16	3242028	3256627	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	17	1	FALSE	HETLOSS	PASS
659_bTo_pair	MEGF10	5	127290831	127465737	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	28	5	FALSE	HETLOSS	PASS
659_bTo_pair	MEGF11	15	65895079	66253747	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	25	0	FALSE	HETLOSS	PASS
659_bTo_pair	MEGF6	1	3489920	3611495	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	37	2	FALSE	DIPLOID	PASS
659_bTo_pair	MEGF8	19	42325609	42378769	FALSE	1179	-0.582084941516902	26	42297317	43535595	NA	2	NA	NA	2	NA	1238278	NA	25	60	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MEGF9	9	120600813	120714470	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	MEI1	22	41699499	41799456	FALSE	1269	-0.443951758803067	34	41205309	42514754	NA	2	NA	NA	2	NA	1309445	NA	31	33	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MEI4	6	77650274	77927028	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	MEIG1	10	14959439	14988050	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	2	1	FALSE	CNLOH	PASS
659_bTo_pair	MEIKIN	5	131806993	131945698	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	12	2	FALSE	HETLOSS	PASS
659_bTo_pair	MEIOB	16	1833987	1884294	FALSE	937	-1.70810798820954	2	1834331	1946734	0.364342740527346	0	0	0.364342740527346	0	0	112403	0	5	13	5	FALSE	HOMDEL	PASS
659_bTo_pair	MEIOC	17	44656404	44690308	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	19	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MEIS1	2	66433452	66573869	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	MEIS2	15	36889204	37101299	FALSE	890	-0.864832779596883	13	34359248	37966686	0.365165917639896	1	0	0.365165917639896	1	0	3607438	1	12	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	MEIS3	19	47403124	47419523	FALSE	1187	-0.64296711085636	26	47021158	48297657	NA	2	NA	NA	2	NA	1276499	NA	31	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MELK	9	36572862	36677683	FALSE	592	-0.0369931589847324	55	36052313	36828293	0.328696605851359	4	NA	0.328696605851359	4	NA	775980	NA	7	18	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MELTF	3	196988621	197029816	FALSE	271	-0.194588974812627	47	196198492	198169864	0.365165917639896	3	1	0.365165917639896	3	1	1971372	2	29	17	1	FALSE	GAIN	PASS
659_bTo_pair	MEMO1	2	31865060	32011230	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	MEN1	11	64803510	64811294	TRUE	705	1.89304754440624	101	64803598	64810988	0.364342740527346	24	NA	0.364342740527346	24	NA	7390	NA	1	21	3	FALSE	AMP	PASS
659_bTo_pair	MEOX1	17	43640388	43661954	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MEOX2	7	15611212	15686812	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	5	0	FALSE	GAIN	PASS
659_bTo_pair	MEP1A	6	46793390	46839782	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	MEP1B	18	32185069	32220404	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	17	1	FALSE	GAIN	PASS
659_bTo_pair	MEPCE	7	100428790	100434126	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	MEPE	4	87821411	87846817	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	MERTK	2	111898479	112029561	FALSE	137	1.26309160945389	86	111898780	112055585	0.364342740527346	15	NA	0.364342740527346	15	NA	156805	NA	2	24	0	FALSE	AMP	PASS
659_bTo_pair	MESD	15	80946289	80989878	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MESP1	15	89748661	89751310	FALSE	925	-0.863518905667221	13	89317527	90079704	0.365165917639896	1	0	0.365165917639896	1	0	762177	1	14	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	MESP2	15	89760591	89778754	FALSE	925	-0.863518905667221	13	89317527	90079704	0.365165917639896	1	0	0.365165917639896	1	0	762177	1	14	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	MEST	7	130486171	130506465	FALSE	494	-0.536776174448359	29	129225418	130685270	NA	2	NA	NA	2	NA	1459852	NA	17	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MET	7	116672390	116798386	FALSE	489	1.80235910461994	98	116667253	116862597	0.364342740527346	23	NA	0.364342740527346	23	NA	195344	NA	2	75	9	FALSE	AMP	PASS
659_bTo_pair	METAP1	4	98995620	99062813	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	METAP1D	2	171999583	172082430	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	METAP2	12	95473520	95515839	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	METRN	16	715115	719655	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	METRNL	17	83079691	83095119	FALSE	1085	-0.607666454607286	26	82405295	83094473	NA	2	NA	NA	2	NA	689178	NA	13	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	METTL1	12	57768471	57772793	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	METTL11B	1	170146001	170167790	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	METTL13	1	171781664	171814023	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	13	4	FALSE	DIPLOID	PASS
659_bTo_pair	METTL14	4	118685368	118715433	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	METTL15	11	28108248	28527041	FALSE	690	-0.499672577426227	34	26697185	32104345	NA	2	NA	NA	2	NA	5407160	NA	20	8	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	METTL16	17	2405562	2511891	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	METTL17	14	20989770	20997035	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	METTL18	1	169792529	169794966	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	METTL21A	2	207580631	207625928	FALSE	168	-0.499602545595775	30	203936898	208231285	1	2	1	1	2	1	4294387	1	25	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	METTL21C	13	102685744	102694504	FALSE	840	-0.335776033141145	43	102193037	102839809	0.192136715055622	3	NA	0.192136715055622	3	NA	646772	NA	9	5	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	METTL22	16	8621683	8649654	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	METTL23	17	76726830	76733936	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	METTL24	6	110245928	110358272	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	METTL25	12	82358497	82479236	FALSE	793	-0.510041181295141	29	76355979	85286979	NA	2	NA	NA	2	NA	8931000	NA	22	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	METTL26	16	634427	636366	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	METTL27	7	73834590	73842535	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	5	2	FALSE	DIPLOID	PASS
659_bTo_pair	METTL2A	17	62423867	62450822	FALSE	1064	-0.419094292936043	39	61867575	63873599	NA	2	NA	NA	2	NA	2006024	NA	24	10	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	METTL2B	7	128476729	128506602	FALSE	492	-0.463656181520944	30	126439208	129166764	1	2	1	1	2	1	2727556	1	27	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	METTL3	14	21498133	21511375	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	METTL4	18	2537525	2571509	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	10	3	FALSE	GAIN	PASS
659_bTo_pair	METTL5	2	169810081	169824931	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	METTL6	3	15381275	15440566	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	METTL7A	12	50923472	50932517	FALSE	772	-0.61197679162419	26	50109466	51920864	NA	2	NA	NA	2	NA	1811398	NA	27	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	METTL7B	12	55681546	55684611	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	METTL8	2	171317405	171434802	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	METTL9	16	21597218	21657473	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	MEX3A	1	156072013	156081998	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	MEX3B	15	82041778	82046141	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	8	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MEX3C	18	51174550	51218304	FALSE	1104	0.400415307174904	66	51028378	52340795	0.364342740527346	6	NA	0.364342740527346	6	NA	1312417	NA	4	8	1	FALSE	AMP (many states)	PASS
659_bTo_pair	MEX3D	19	1554669	1568058	FALSE	1116	-0.668595541323287	22	1229189	1605424	0.291335969972972	1	0	0.291335969972972	1	0	376235	1	21	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	MFAP1	15	43804492	43824802	FALSE	902	-0.672637691845835	22	43521582	44676538	0.291335969972972	1	0	0.291335969972972	1	0	1154956	1	21	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	MFAP2	1	16974502	16980835	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	MFAP3	5	154038906	154220478	FALSE	351	-0.617975601907695	26	154002251	157057925	NA	2	NA	NA	2	NA	3055674	NA	15	7	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MFAP3L	4	169986597	170033031	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	MFAP4	17	19383442	19387240	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	7	0	FALSE	CNLOH	PASS
659_bTo_pair	MFAP5	12	8637346	8662888	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	MFF	2	227325151	227357836	FALSE	186	-0.695736902539597	22	226867246	227993567	0.291335969972972	1	0	0.291335969972972	1	0	1126321	1	19	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	MFGE8	15	88898683	88913411	FALSE	923	-0.958549275925123	11	88459674	89218937	0.289956079954009	0	0	0.289956079954009	0	0	759263	0	11	10	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MFHAS1	8	8783354	8893645	FALSE	514	1.73907509203007	97	8786036	9003110	0.364342740527346	22	NA	0.364342740527346	22	NA	217074	NA	2	14	0	FALSE	AMP	PASS
659_bTo_pair	MFN1	3	179347692	179394931	FALSE	253	-0.302573270656947	43	179243074	180989661	0.192136715055622	3	NA	0.192136715055622	3	NA	1746587	NA	13	17	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MFN2	1	11980181	12013514	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	MFNG	22	37469063	37486401	FALSE	1263	-0.528184158498335	29	36991204	37967644	NA	2	NA	NA	2	NA	976440	NA	31	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MFRP	11	119338942	119346673	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	18	1	FALSE	DIPLOID	PASS
659_bTo_pair	MFSD1	3	158732198	158829719	FALSE	250	-0.231905273142314	46	156829339	161250770	0.298322295679939	3	NA	0.298322295679939	3	NA	4421431	NA	26	18	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	MFSD10	4	2930561	2934859	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	11	1	FALSE	GAIN	PASS
659_bTo_pair	MFSD11	17	76735865	76781449	FALSE	1079	1.98096544338825	104	76734274	76738977	0.364342740527346	26	NA	0.364342740527346	26	NA	4703	NA	3	19	0	TRUE	AMP	PASS
659_bTo_pair	MFSD12	19	3538261	3574290	FALSE	1122	-0.653400653967241	21	3157829	4037863	0.140309795179477	0	0	0.140309795179477	0	0	880034	0	27	20	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MFSD13A	10	102461395	102477045	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	11	3	FALSE	CNLOH	PASS
659_bTo_pair	MFSD14A	1	100038097	100083377	FALSE	31	-0.34979279123772	43	94820443	100270584	0.192136715055622	3	NA	0.192136715055622	3	NA	5450141	NA	22	12	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MFSD14B	9	94374551	94461042	FALSE	606	-0.547644280946133	27	91214370	95094057	1	2	1	1	2	1	3879687	1	31	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	MFSD14C	9	96887373	97013708	FALSE	608	-0.541405085979946	27	95522076	99069752	1	2	1	1	2	1	3547676	1	31	18	4	FALSE	DIPLOID	PASS
659_bTo_pair	MFSD2A	1	39955112	39969968	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	MFSD2B	2	24010081	24063321	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	27	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MFSD3	8	144509074	144511213	FALSE	567	-0.105236489871624	53	144506366	144510629	0.273255132087987	4	NA	0.273255132087987	4	NA	4263	NA	2	7	0	TRUE	GAIN (many states)	PASS
659_bTo_pair	MFSD4A	1	205568885	205602918	FALSE	66	-0.597189828646048	26	204618263	205619845	NA	2	NA	NA	2	NA	1001582	NA	13	12	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MFSD4B	6	111259348	111271167	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	MFSD5	12	53251251	53254405	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	MFSD6	2	190408355	190509205	FALSE	161	-0.46057869782823	30	190057617	197310624	1	2	1	1	2	1	7253007	1	23	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	MFSD6L	17	8797162	8799349	FALSE	1006	-0.894220729735546	12	8370429	10825247	0.365165917639896	1	0	0.365165917639896	1	0	2454818	1	31	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	MFSD8	4	127917732	127966034	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	MFSD9	2	102715840	102736888	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	MGA	15	41621224	41773081	TRUE	894	-0.874433234740196	13	41183964	41662415	0.365165917639896	1	0	0.365165917639896	1	0	478451	1	12	80	5	TRUE	HETLOSS	PASS
659_bTo_pair	MGAM	7	141907813	142106747	FALSE	500	-0.745042700177313	19	140929950	142218464	0.365165917639896	1	0	0.365165917639896	1	0	1288514	1	15	61	7	FALSE	HETLOSS	PASS
659_bTo_pair	MGAM2	7	142111749	142222324	FALSE	500	-0.745042700177313	19	140929950	142218464	0.365165917639896	1	0	0.365165917639896	1	0	1288514	1	15	55	4	TRUE	HETLOSS	PASS
659_bTo_pair	MGARP	4	139266163	139280338	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	MGAT1	5	180784782	180815652	FALSE	363	-0.662769973757303	22	180739384	181260807	0.291335969972972	1	0	0.291335969972972	1	0	521423	1	12	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	MGAT2	14	49620795	49623481	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	MGAT3	22	39457344	39492194	FALSE	1267	-0.448885551917151	34	39313004	41087696	NA	2	NA	NA	2	NA	1774692	NA	24	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MGAT4A	2	98619106	98731126	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	MGAT4B	5	179797597	179806952	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	MGAT4C	12	85955666	86838904	FALSE	794	-0.258431968401282	46	85301316	91178343	0.298322295679939	3	NA	0.298322295679939	3	NA	5877027	NA	19	10	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MGAT4D	4	140442262	140498377	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	MGAT5	2	134119983	134454621	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	17	1	FALSE	DIPLOID	PASS
659_bTo_pair	MGAT5B	17	76868456	76950393	FALSE	1080	-0.537824093701074	27	76741010	78870935	1	2	1	1	2	1	2129925	1	20	20	3	FALSE	DIPLOID	PASS
659_bTo_pair	MGLL	3	127689062	128052190	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	19	0	FALSE	GAIN	PASS
659_bTo_pair	MGME1	20	17968913	17991122	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	MGMT	10	129467184	129768007	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	6	0	FALSE	CNLOH	PASS
659_bTo_pair	MGP	12	14881181	14885926	FALSE	753	-0.517160615058114	27	12726042	18242949	1	2	1	1	2	1	5516907	1	31	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	MGRN1	16	4616493	4690974	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	18	3	FALSE	DIPLOID	PASS
659_bTo_pair	MGST1	12	16347142	16609259	FALSE	753	-0.517160615058114	27	12726042	18242949	1	2	1	1	2	1	5516907	1	31	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	MGST2	4	139665768	139740745	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	MGST3	1	165630861	165661796	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	MIA	19	40771648	40777490	FALSE	1173	-0.760690164248215	19	40322104	40807873	0.365165917639896	1	0	0.365165917639896	1	0	485769	1	21	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	MIA-RAB4B	19	40771648	40796943	FALSE	1173	-0.760690164248215	19	40322104	40807873	0.365165917639896	1	0	0.365165917639896	1	0	485769	1	21	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	MIA2	14	39230231	39388513	FALSE	858	-0.388807455224718	39	37680254	45134449	NA	2	NA	NA	2	NA	7454195	NA	16	39	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MIA3	1	222618086	222668012	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	40	3	FALSE	DIPLOID	PASS
659_bTo_pair	MIB1	18	21704957	21870957	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	22	0	FALSE	GAIN	PASS
659_bTo_pair	MIB2	1	1615415	1630610	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	23	2	FALSE	DIPLOID	PASS
659_bTo_pair	MICA	6	31399784	31415315	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	7	4	FALSE	HETLOSS	PASS
659_bTo_pair	MICAL1	6	109444062	109465968	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	30	1	FALSE	DIPLOID	PASS
659_bTo_pair	MICAL2	11	12094008	12359144	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	41	3	FALSE	DIPLOID	PASS
659_bTo_pair	MICAL3	22	17787649	18024559	FALSE	1240	-0.594689860601271	26	15528179	18606839	NA	2	NA	NA	2	NA	3078660	NA	21	45	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MICALL1	22	37905657	37942822	FALSE	1263	-0.528184158498335	29	36991204	37967644	NA	2	NA	NA	2	NA	976440	NA	31	19	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MICALL2	7	1428465	1459502	FALSE	450	-0.329551508654045	40	193185	2379492	0.308149309490068	3	1	0.308149309490068	3	1	2186307	2	26	21	1	FALSE	GAIN	PASS
659_bTo_pair	MICB	6	31494881	31511124	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	9	2	FALSE	HETLOSS	PASS
659_bTo_pair	MICU1	10	72367327	72626191	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	13	0	FALSE	CNLOH	PASS
659_bTo_pair	MICU2	13	21492691	21604214	FALSE	821	-0.916323932116457	13	21147296	21604174	0.365165917639896	1	0	0.365165917639896	1	0	456878	1	5	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	MICU3	8	17027238	17122644	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	16	1	FALSE	HETLOSS	PASS
659_bTo_pair	MID1	23	10445310	10833654	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	15	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	MID1IP1	23	38801432	38806537	FALSE	1287	2.04998533027557	105	38805075	40152950	0.364342740527346	28	NA	0.364342740527346	28	NA	1347875	NA	2	3	0	FALSE	AMP	PASS
659_bTo_pair	MID2	23	107825755	107927193	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	14	0	FALSE	AMP (many states)	PASS
659_bTo_pair	MIDN	19	1248553	1259140	FALSE	1116	-0.668595541323287	22	1229189	1605424	0.291335969972972	1	0	0.291335969972972	1	0	376235	1	21	11	2	FALSE	HETLOSS	PASS
659_bTo_pair	MIEF1	22	39499432	39518132	FALSE	1267	-0.448885551917151	34	39313004	41087696	NA	2	NA	NA	2	NA	1774692	NA	24	9	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MIEF2	17	18260534	18266552	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	8	0	FALSE	CNLOH	PASS
659_bTo_pair	MIEN1	17	39728496	39730787	FALSE	1027	0.830273505970342	75	39687945	39728696	0.364342740527346	10	NA	0.364342740527346	10	NA	40751	NA	3	5	0	TRUE	AMP	PASS
659_bTo_pair	MIER1	1	66924895	66988619	FALSE	23	-0.326404897444941	43	65224778	71080923	0.192136715055622	3	NA	0.192136715055622	3	NA	5856145	NA	29	18	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MIER2	19	301444	344815	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	14	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MIER3	5	56919602	56971675	FALSE	321	-0.708699637138103	22	56909652	57262746	0.291335969972972	1	0	0.291335969972972	1	0	353094	1	3	14	3	FALSE	HETLOSS	PASS
659_bTo_pair	MIF	22	23894004	23895227	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	3	0	FALSE	CNLOH	PASS
659_bTo_pair	MIF4GD	17	75266228	75271227	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	MIGA1	1	77779624	77879539	FALSE	25	-0.394411030612058	39	74026891	77942032	NA	2	NA	NA	2	NA	3915141	NA	22	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MIGA2	9	129036621	129072082	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	18	1	FALSE	HETLOSS	PASS
659_bTo_pair	MIIP	1	12019466	12032045	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	MILR1	17	64449037	64468643	FALSE	1066	-0.447707994366894	34	63941413	64859452	NA	2	NA	NA	2	NA	918039	NA	12	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MINDY1	1	150996086	151008375	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	MINDY2	15	58771192	58861900	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	MINDY3	10	15778170	15860520	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	15	1	FALSE	CNLOH	PASS
659_bTo_pair	MINDY4	7	30771417	30892387	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	21	0	FALSE	GAIN	PASS
659_bTo_pair	MINDY4B	3	150871045	150905439	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	4	0	FALSE	GAIN	PASS
659_bTo_pair	MINK1	17	4833388	4898061	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	34	5	FALSE	HETLOSS	PASS
659_bTo_pair	MINOS1	1	19484403	19629821	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	MINOS1-NBL1	1	19597067	19656927	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	MINPP1	10	87504875	87553460	FALSE	656	-0.313191165123093	43	86936767	87862427	0.192136715055622	3	NA	0.192136715055622	3	NA	925660	NA	12	9	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	MIOS	7	7566872	7608929	FALSE	456	-0.240618790532325	45	6028682	12688782	0.279823559258657	3	0	0.279823559258657	3	0	6660100	3	32	15	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	MIOX	22	50486784	50490648	FALSE	1272	-0.260847831900416	46	50286270	50731222	0.298322295679939	3	NA	0.298322295679939	3	NA	444952	NA	19	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MIP	12	56449502	56469166	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MIPEP	13	23730189	23889419	FALSE	824	-0.820211361281197	14	23365275	27988570	0.365165917639896	1	0	0.365165917639896	1	0	4623295	1	32	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	MIPOL1	14	37197913	37552361	FALSE	856	-0.275818745994621	46	36581441	37500152	0.298322295679939	3	NA	0.298322295679939	3	NA	918711	NA	4	13	0	TRUE	GAIN (many states)	PASS
659_bTo_pair	MIS12	17	5486285	5490814	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	MIS18A	21	32268219	32279069	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	MIS18BP1	14	45203190	45253540	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	23	0	FALSE	DIPLOID	PASS
659_bTo_pair	MISP	19	751126	764318	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	10	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MISP3	19	14072536	14075062	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MITD1	2	99161427	99181058	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	MITF	3	69739435	69968337	TRUE	229	0.774994071504096	74	69734550	71589030	0.364342740527346	9	NA	0.364342740527346	9	NA	1854480	NA	4	40	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	MIXL1	1	226223618	226227054	FALSE	75	-1.19608418574967	6	226152597	226309193	0.365165917639896	0	0	0.365165917639896	0	0	156596	0	3	4	0	FALSE	HOMDEL	PASS
659_bTo_pair	MKI67	10	128096659	128126385	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	47	3	FALSE	CNLOH	PASS
659_bTo_pair	MKKS	20	10401009	10434222	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	MKLN1	7	131110096	131496636	FALSE	495	0.710651497817957	74	130733123	131487632	0.364342740527346	9	NA	0.364342740527346	9	NA	754509	NA	2	51	7	TRUE	INDETERMINATE	PASS
659_bTo_pair	MKNK1	1	46557408	46616843	FALSE	16	-0.485631979032023	30	46175602	48453048	1	2	1	1	2	1	2277446	1	32	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	MKNK2	19	2037465	2051244	FALSE	1118	-0.58059819545476	23	1775405	2151345	0.186356639256811	1	0	0.186356639256811	1	0	375940	1	13	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	MKRN1	7	140453040	140479569	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	MKRN2	3	12557014	12583713	FALSE	203	-1.28979799478101	5	12489873	12576710	0.365165917639896	0	0	0.365165917639896	0	0	86837	0	3	14	0	TRUE	HOMDEL	PASS
659_bTo_pair	MKRN2OS	3	12514934	12561059	FALSE	203	-1.28979799478101	5	12489873	12576710	0.365165917639896	0	0	0.365165917639896	0	0	86837	0	3	12	0	FALSE	HOMDEL	PASS
659_bTo_pair	MKRN3	15	23565674	23630075	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	MKS1	17	58205437	58219605	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	19	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MKX	10	27672875	27746060	FALSE	638	-0.441875687518437	32	27112127	31908266	0.365165917639896	2	0	0.365165917639896	2	0	4796139	2	18	8	0	FALSE	CNLOH	PASS
659_bTo_pair	MLANA	9	5890802	5910606	FALSE	579	-0.757785700087963	19	5656721	7798588	0.365165917639896	1	0	0.365165917639896	1	0	2141867	1	11	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	MLC1	22	50059391	50085902	FALSE	1271	-0.350898193716427	41	45922979	50285791	0.284729887459054	3	0	0.284729887459054	3	0	4362812	3	30	11	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	MLEC	12	120686869	120701864	FALSE	810	-0.438737881374958	34	120127967	120903912	NA	2	NA	NA	2	NA	775945	NA	20	5	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MLF1	3	158571163	158607252	FALSE	250	-0.231905273142314	46	156829339	161250770	0.298322295679939	3	NA	0.298322295679939	3	NA	4421431	NA	26	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MLF2	12	6747996	6767475	FALSE	743	-0.145896859645485	51	6620180	6938488	0.365165917639896	3	NA	0.365165917639896	3	NA	318308	NA	20	8	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	MLH1	3	36993332	37050918	TRUE	209	-0.637968449787088	26	31990360	37328493	NA	2	NA	NA	2	NA	5338133	NA	26	42	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MLH3	14	75013764	75051532	FALSE	865	2.59409277575353	115	75014064	75016921	0.364342740527346	42	NA	0.364342740527346	42	NA	2857	NA	1	39	0	TRUE	AMP	PASS
659_bTo_pair	MLIP	6	53929982	54266280	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	23	0	FALSE	DIPLOID	PASS
659_bTo_pair	MLKL	16	74671855	74700960	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	MLLT1	19	6210379	6279948	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	MLLT10	10	21524675	21743630	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	30	0	FALSE	CNLOH	PASS
659_bTo_pair	MLLT11	1	151057758	151068497	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	MLLT3	9	20341665	20622543	FALSE	582	1.94852045823371	102	20341814	20622535	0.364342740527346	26	NA	0.364342740527346	26	NA	280721	NA	1	34	0	FALSE	AMP	PASS
659_bTo_pair	MLLT6	17	38705542	38729803	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	27	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MLN	6	33794673	33804011	FALSE	391	-0.499783837646083	34	33391964	35241176	NA	2	NA	NA	2	NA	1849212	NA	26	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MLNR	13	49220338	49222377	FALSE	835	-0.766581964775609	19	48490223	50953919	0.365165917639896	1	0	0.365165917639896	1	0	2463696	1	18	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	MLPH	2	237485428	237555318	FALSE	190	-0.691419458816616	21	236392006	238848635	0.140309795179477	0	0	0.140309795179477	0	0	2456629	0	22	16	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MLST8	16	2204248	2209416	FALSE	942	-0.803500535593988	16	2178660	2530995	0.365165917639896	1	0	0.365165917639896	1	0	352335	1	18	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	MLX	17	42567068	42573239	FALSE	1038	-0.623371137159426	26	42404937	42698887	NA	2	NA	NA	2	NA	293950	NA	13	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MLXIP	12	122078722	122147347	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	MLXIPL	7	73593194	73624543	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	MLYCD	16	83899126	83927026	FALSE	987	-0.578642888038652	23	81999201	85806436	0.186356639256811	1	0	0.186356639256811	1	0	3807235	1	31	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	MMAA	4	145599042	145660035	FALSE	300	-0.423460920061428	34	143186078	151174790	NA	2	NA	NA	2	NA	7988712	NA	32	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MMAB	12	109553737	109573874	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	MMACHC	1	45500053	45513382	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	MMADHC	2	149569634	149587816	FALSE	149	-0.454179855872301	30	147845197	157628657	1	2	1	1	2	1	9783460	1	30	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	MMD	17	55392613	55421992	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	7	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MMD2	7	4905989	4959213	FALSE	453	-0.32600279290147	42	3619174	5500988	0.189552622934988	3	0	0.189552622934988	3	0	1881814	3	12	8	2	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	MME	3	155024124	155183729	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	22	1	FALSE	GAIN	PASS
659_bTo_pair	MMEL1	1	2590639	2632990	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	23	0	FALSE	DIPLOID	PASS
659_bTo_pair	MMGT1	23	135962070	135974063	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MMP1	11	102789920	102798160	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	10	4	FALSE	HETLOSS	PASS
659_bTo_pair	MMP10	11	102770503	102780628	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	MMP11	22	23768226	23784316	FALSE	1252	-0.948790128902656	11	23317677	23779437	0.289956079954009	0	0	0.289956079954009	0	0	461760	0	9	12	1	TRUE	HOMDEL	PASS
659_bTo_pair	MMP12	11	102862736	102875034	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	MMP13	11	102942995	102955734	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	MMP14	14	22836557	22849027	FALSE	849	-0.198876830204613	48	21522824	22901846	0.365165917639896	3	NA	0.365165917639896	3	NA	1379022	NA	15	12	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MMP15	16	58025566	58046901	FALSE	972	-0.499158643645776	34	57931773	64947842	NA	2	NA	NA	2	NA	7016069	NA	18	13	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MMP16	8	88032009	88328025	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	12	0	FALSE	GAIN	PASS
659_bTo_pair	MMP17	12	131828393	131851783	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	MMP19	12	55835433	55842966	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	MMP2	16	55389700	55506691	FALSE	968	-0.505434692233225	30	51151209	56683230	1	2	1	1	2	1	5532021	1	34	14	2	FALSE	DIPLOID	PASS
659_bTo_pair	MMP20	11	102576835	102625332	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	MMP21	10	125766453	125775821	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	10	1	FALSE	CNLOH	PASS
659_bTo_pair	MMP23B	1	1632095	1635263	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	MMP24	20	35226654	35277000	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	MMP24OS	20	35201745	35278131	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	MMP25	16	3046681	3060726	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	MMP26	11	4704927	4992429	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	53	4	FALSE	HETLOSS	PASS
659_bTo_pair	MMP27	11	102691487	102705806	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	MMP28	17	35756249	35795707	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	15	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MMP3	11	102835801	102843803	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	10	3	FALSE	HETLOSS	PASS
659_bTo_pair	MMP7	11	102520508	102530753	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	MMP8	11	102711795	102727050	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	12	3	FALSE	HETLOSS	PASS
659_bTo_pair	MMP9	20	46008908	46016561	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	MMRN1	4	89879532	89954629	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	18	1	FALSE	DIPLOID	PASS
659_bTo_pair	MMRN2	10	86935540	86969481	FALSE	656	-0.313191165123093	43	86936767	87862427	0.192136715055622	3	NA	0.192136715055622	3	NA	925660	NA	12	23	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	MMS19	10	97458324	97498794	FALSE	664	-0.371799025630062	36	96955124	97864220	0.365165917639896	2	0	0.365165917639896	2	0	909096	2	23	32	5	FALSE	CNLOH	PASS
659_bTo_pair	MMS22L	6	97142161	97283217	FALSE	411	-0.455063723695114	34	95586870	106069771	NA	2	NA	NA	2	NA	10482901	NA	27	26	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MN1	22	27748277	27801498	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	15	0	FALSE	CNLOH	PASS
659_bTo_pair	MNAT1	14	60734742	60969953	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	MND1	4	153344649	153415118	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	MNDA	1	158831317	158849506	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	MNS1	15	56421544	56465137	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	MNT	17	2384060	2401118	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	MNX1	7	156994051	157010651	FALSE	509	-0.56054035608462	23	152759958	159144708	0.186356639256811	1	0	0.186356639256811	1	0	6384750	1	20	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	MOAP1	14	93182196	93184928	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	MOB1A	2	74152528	74178898	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MOB1B	4	70902326	71022449	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	MOB2	11	1469457	1501247	FALSE	679	-0.702000712925199	21	1256247	1938477	0.140309795179477	0	0	0.140309795179477	0	0	682230	0	19	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MOB3A	19	2071038	2096673	FALSE	1118	-0.58059819545476	23	1775405	2151345	0.186356639256811	1	0	0.186356639256811	1	0	375940	1	13	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	MOB3B	9	27325209	27529781	TRUE	585	-0.464842894155678	32	22447079	32572950	0.365165917639896	2	0	0.365165917639896	2	0	10125871	2	19	7	0	FALSE	CNLOH	PASS
659_bTo_pair	MOB3C	1	46607715	46616891	FALSE	16	-0.485631979032023	30	46175602	48453048	1	2	1	1	2	1	2277446	1	32	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	MOB4	2	197515571	197553699	FALSE	163	-0.632896131155704	26	197453631	198083720	NA	2	NA	NA	2	NA	630089	NA	9	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MOBP	3	39467198	39529479	FALSE	212	-0.750996176556328	19	38165958	40533064	0.365165917639896	1	0	0.365165917639896	1	0	2367106	1	26	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	MOCOS	18	36187519	36272157	FALSE	1095	-0.699288883997088	20	33734323	36718652	0.365165917639896	1	0	0.365165917639896	1	0	2984329	1	17	18	2	FALSE	HETLOSS	PASS
659_bTo_pair	MOCS1	6	39899578	39934551	FALSE	397	-0.509151429367598	27	37213022	41687167	1	2	1	1	2	1	4474145	1	33	19	1	FALSE	DIPLOID	PASS
659_bTo_pair	MOCS2	5	53095679	53110063	FALSE	319	-0.764156631411702	19	50399919	56556187	0.365165917639896	1	0	0.365165917639896	1	0	6156268	1	28	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	MOCS3	20	50958826	50963931	FALSE	1218	-0.459978768286429	34	50587211	53185754	NA	2	NA	NA	2	NA	2598543	NA	12	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MOG	6	29656981	29672372	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	MOGAT1	2	222671786	222709930	FALSE	181	-0.697161202800517	22	222304006	224401731	0.291335969972972	1	0	0.291335969972972	1	0	2097725	1	12	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	MOGAT2	11	75717819	75732958	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	9	0	FALSE	GAIN	PASS
659_bTo_pair	MOGAT3	7	101195007	101201038	FALSE	484	-0.570670723449775	26	101042591	102111653	NA	2	NA	NA	2	NA	1069062	NA	15	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MOGS	2	74461057	74465410	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MOK	14	102224500	102305200	FALSE	878	-0.78309571727566	16	102193484	102726534	0.365165917639896	1	0	0.365165917639896	1	0	533050	1	7	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	MON1A	3	49907160	49930173	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	MON1B	16	77190835	77202405	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	11	2	FALSE	DIPLOID	PASS
659_bTo_pair	MON2	12	62466817	62600479	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	39	0	FALSE	DIPLOID	PASS
659_bTo_pair	MORC1	3	108958239	109118142	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	28	1	FALSE	GAIN	PASS
659_bTo_pair	MORC2	22	30925130	30968298	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	27	0	FALSE	CNLOH	PASS
659_bTo_pair	MORC3	21	36320189	36386148	FALSE	1228	-0.430637379115077	30	36009679	38367602	1	2	1	1	2	1	2357923	1	17	20	1	FALSE	DIPLOID	PASS
659_bTo_pair	MORC4	23	106813871	107000244	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	54	0	FALSE	AMP (many states)	PASS
659_bTo_pair	MORF4L1	15	78810487	78898133	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	14	4	FALSE	HETLOSS	PASS
659_bTo_pair	MORF4L2	23	103675496	103688158	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	MORN1	1	2321253	2391707	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	MORN2	2	38875962	38929072	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	MORN3	12	121648742	121672631	FALSE	812	-0.468438273619664	34	121006302	121793667	NA	2	NA	NA	2	NA	787365	NA	12	5	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MORN4	10	97614553	97633500	FALSE	664	-0.371799025630062	36	96955124	97864220	0.365165917639896	2	0	0.365165917639896	2	0	909096	2	23	4	0	FALSE	CNLOH	PASS
659_bTo_pair	MORN5	9	122159908	122200088	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	MOS	8	56112942	56113982	FALSE	547	0.0601932906587055	59	56069824	56168120	0.308533751035793	5	NA	0.308533751035793	5	NA	98296	NA	3	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	MOSMO	16	22007638	22087534	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	MOSPD1	23	134887626	134915267	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MOSPD2	23	14873441	14922327	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	16	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	MOSPD3	7	100612102	100615384	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	MOV10	1	112673141	112700746	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	21	4	FALSE	HETLOSS	PASS
659_bTo_pair	MOV10L1	22	50089879	50161690	FALSE	1271	-0.350898193716427	41	45922979	50285791	0.284729887459054	3	0	0.284729887459054	3	0	4362812	3	30	30	1	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	MOXD1	6	132296055	132401545	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	MPC1	6	166364919	166383013	FALSE	447	-0.721809212356928	19	165280135	167033904	0.365165917639896	1	0	0.365165917639896	1	0	1753769	1	11	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	MPC1L	23	40623566	40624136	FALSE	1288	0.0977543403034234	59	40162702	41232378	0.308533751035793	5	NA	0.308533751035793	5	NA	1069676	NA	6	1	0	FALSE	AMP (many states)	PASS
659_bTo_pair	MPC2	1	167916729	167937040	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	MPDU1	17	7583529	7592789	FALSE	1000	-0.750226164220686	19	7324407	7655594	0.365165917639896	1	0	0.365165917639896	1	0	331187	1	31	14	1	FALSE	HETLOSS	PASS
659_bTo_pair	MPDZ	9	13105704	13279590	FALSE	581	-0.746183084602222	19	10618009	19786745	0.365165917639896	1	0	0.365165917639896	1	0	9168736	1	24	50	0	FALSE	HETLOSS	PASS
659_bTo_pair	MPEG1	11	59208510	59212951	FALSE	699	2.39218498245042	112	59210935	59364528	0.364342740527346	36	NA	0.364342740527346	36	NA	153593	NA	2	9	1	FALSE	AMP	PASS
659_bTo_pair	MPG	16	77007	85853	FALSE	934	-0.725703643263354	19	47610	287124	0.365165917639896	1	0	0.365165917639896	1	0	239514	1	16	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	MPHOSPH10	2	71130314	71150101	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	13	2	FALSE	DIPLOID	PASS
659_bTo_pair	MPHOSPH6	16	82147798	82170226	FALSE	987	-0.578642888038652	23	81999201	85806436	0.186356639256811	1	0	0.186356639256811	1	0	3807235	1	31	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	MPHOSPH8	13	19633681	19673459	FALSE	819	-0.883807164728579	13	19173884	20902691	0.365165917639896	1	0	0.365165917639896	1	0	1728807	1	14	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	MPHOSPH9	12	123152320	123244014	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	27	0	FALSE	DIPLOID	PASS
659_bTo_pair	MPI	15	74890005	74902219	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	MPIG6B	6	31718594	31726714	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	MPL	1	43337849	43352772	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	MPLKIP	7	40126023	40134652	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	3	0	FALSE	GAIN	PASS
659_bTo_pair	MPND	19	4343527	4360086	FALSE	1124	-0.62008955817668	23	4168484	5151543	0.186356639256811	1	0	0.186356639256811	1	0	983059	1	28	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	MPO	17	58269856	58280935	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MPP1	23	154778684	154821007	FALSE	1341	-0.0231097163941018	55	154552015	155545250	0.328696605851359	4	NA	0.328696605851359	4	NA	993235	NA	23	13	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MPP2	17	43875357	43909711	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MPP3	17	43800799	43833170	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	19	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MPP4	2	201644870	201698694	FALSE	166	-0.425780118113581	30	201288659	203854096	1	2	1	1	2	1	2565437	1	22	21	1	FALSE	DIPLOID	PASS
659_bTo_pair	MPP5	14	67241109	67335819	FALSE	862	-0.496151350288089	31	65561584	67816009	1	2	1	1	2	1	2254425	1	17	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	MPP6	7	24573268	24694193	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	11	2	FALSE	GAIN	PASS
659_bTo_pair	MPP7	10	28050993	28334486	FALSE	638	-0.441875687518437	32	27112127	31908266	0.365165917639896	2	0	0.365165917639896	2	0	4796139	2	18	16	0	FALSE	CNLOH	PASS
659_bTo_pair	MPPE1	18	11882622	11909223	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	10	1	FALSE	GAIN	PASS
659_bTo_pair	MPPED1	22	43411196	43507848	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	8	1	FALSE	CNLOH	PASS
659_bTo_pair	MPPED2	11	30384493	30586872	FALSE	690	-0.499672577426227	34	26697185	32104345	NA	2	NA	NA	2	NA	5407160	NA	20	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MPRIP	17	17042545	17217679	FALSE	1012	-0.646922995033775	26	16234077	17184849	NA	2	NA	NA	2	NA	950772	NA	11	44	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	MPST	22	37019635	37029822	FALSE	1263	-0.528184158498335	29	36991204	37967644	NA	2	NA	NA	2	NA	976440	NA	31	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MPV17	2	27309492	27325680	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	MPV17L	16	15395754	15413268	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	MPV17L2	19	18193182	18196948	FALSE	1159	-0.165917001507678	49	18177228	19138502	0.365165917639896	3	1	0.365165917639896	3	1	961274	2	36	5	1	FALSE	GAIN	PASS
659_bTo_pair	MPZ	1	161304735	161309972	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	MPZL1	1	167721192	167791919	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	MPZL2	11	118253403	118264536	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	MPZL3	11	118226690	118252350	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	MR1	1	181033425	181061938	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	MRAP	21	32291813	32314784	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	MRAP2	6	84033756	84090881	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	MRAS	3	138347648	138405534	FALSE	244	-0.465451876797886	34	136855703	138629155	NA	2	NA	NA	2	NA	1773452	NA	14	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MRC1	10	17809344	17911170	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	18	5	FALSE	CNLOH	PASS
659_bTo_pair	MRC2	17	62627401	62693597	FALSE	1064	-0.419094292936043	39	61867575	63873599	NA	2	NA	NA	2	NA	2006024	NA	24	34	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MRE11	11	94415578	94493908	TRUE	716	1.00540461717022	80	94415686	94498892	0.364342740527346	12	NA	0.364342740527346	12	NA	83206	NA	2	47	4	FALSE	AMP	PASS
659_bTo_pair	MREG	2	215942805	216034096	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	MRFAP1	4	6640091	6642745	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	2	0	FALSE	GAIN	PASS
659_bTo_pair	MRFAP1L1	4	6707701	6709880	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	2	0	FALSE	GAIN	PASS
659_bTo_pair	MRGBP	20	62796453	62801738	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	MRGPRD	11	68980021	68980986	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	4	0	FALSE	GAIN	PASS
659_bTo_pair	MRGPRE	11	3227698	3232386	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	MRGPRF	11	69004395	69013409	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	6	0	FALSE	GAIN	PASS
659_bTo_pair	MRGPRG	11	3217944	3218813	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	MRGPRX1	11	18933813	18939507	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	MRGPRX2	11	19054455	19060681	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	MRGPRX3	11	18120955	18138480	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	MRGPRX4	11	18172837	18174280	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	MRI1	19	13764532	13774282	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	9	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	MRLN	10	59736692	59756041	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	1	0	FALSE	CNLOH	PASS
659_bTo_pair	MRM1	17	36601572	36608971	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MRM2	7	2234231	2242198	FALSE	450	-0.329551508654045	40	193185	2379492	0.308149309490068	3	1	0.308149309490068	3	1	2186307	2	26	4	0	FALSE	GAIN	PASS
659_bTo_pair	MRM3	17	782273	792509	FALSE	996	-0.883704003468192	13	148164	1298296	0.365165917639896	1	0	0.365165917639896	1	0	1150132	1	14	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	MRNIP	5	179835133	179862173	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	MRO	18	50795120	50825402	FALSE	1103	-0.712987700962632	19	48029643	51023578	0.365165917639896	1	0	0.365165917639896	1	0	2993935	1	20	8	2	FALSE	HETLOSS	PASS
659_bTo_pair	MROH1	8	144148016	144261940	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	MROH2A	2	233775679	233833423	FALSE	189	-0.580904316133535	23	233779383	236380649	0.186356639256811	1	0	0.186356639256811	1	0	2601266	1	10	41	11	FALSE	HETLOSS	PASS
659_bTo_pair	MROH2B	5	40998017	41071342	FALSE	316	-0.143574193475256	49	39021030	43704252	0.365165917639896	3	1	0.365165917639896	3	1	4683222	2	28	42	4	FALSE	GAIN	PASS
659_bTo_pair	MROH6	8	143566187	143572971	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	MROH7	1	54641754	54710266	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	28	5	FALSE	DIPLOID	PASS
659_bTo_pair	MROH7-TTC4	1	54641786	54742308	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	38	8	FALSE	DIPLOID	PASS
659_bTo_pair	MROH8	20	37101226	37179588	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	23	4	FALSE	DIPLOID	PASS
659_bTo_pair	MROH9	1	170935471	171064765	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	22	2	FALSE	DIPLOID	PASS
659_bTo_pair	MRPL1	4	77862520	77952790	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	MRPL10	17	47823272	47831534	FALSE	1049	-0.703360644300681	22	47810585	48529853	0.291335969972972	1	0	0.291335969972972	1	0	719268	1	15	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	MRPL11	11	66435075	66466738	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	6	0	FALSE	GAIN	PASS
659_bTo_pair	MRPL12	17	81703357	81707526	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	MRPL13	8	120380761	120445402	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	7	0	FALSE	GAIN	PASS
659_bTo_pair	MRPL14	6	44113454	44127457	FALSE	403	-0.460377194073257	34	44113878	44253574	NA	2	NA	NA	2	NA	139696	NA	6	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MRPL15	8	54135210	54147901	FALSE	543	-0.403572692824667	39	47962754	54147613	NA	2	NA	NA	2	NA	6184859	NA	18	6	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MRPL16	11	59806135	59810872	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	5	0	FALSE	GAIN	PASS
659_bTo_pair	MRPL17	11	6680782	6683401	FALSE	683	-0.403180715137318	35	6615199	8138345	1	2	1	1	2	1	1523146	1	28	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	MRPL18	6	159789812	159798436	FALSE	444	-0.505238631103688	30	158776425	160753038	1	2	1	1	2	1	1976613	1	17	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	MRPL19	2	75646783	75690851	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	17	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MRPL2	6	43054029	43059806	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	MRPL20	1	1401908	1407313	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MRPL21	11	68891276	68903835	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	7	0	FALSE	GAIN	PASS
659_bTo_pair	MRPL22	5	154941070	154969411	FALSE	351	-0.617975601907695	26	154002251	157057925	NA	2	NA	NA	2	NA	3055674	NA	15	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MRPL23	11	1947278	1984522	FALSE	680	1.48794523048071	90	1956426	2149537	0.364342740527346	18	NA	0.364342740527346	18	NA	193111	NA	3	1	0	FALSE	AMP	PASS
659_bTo_pair	MRPL24	1	156737303	156741590	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	MRPL27	17	50367857	50373214	FALSE	1053	-0.561829441831031	26	49646906	50626743	NA	2	NA	NA	2	NA	979837	NA	25	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MRPL28	16	366969	371289	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MRPL3	3	131462212	131502983	FALSE	242	-0.32037413513609	40	130560427	134790274	0.308149309490068	3	1	0.308149309490068	3	1	4229847	2	29	10	0	FALSE	GAIN	PASS
659_bTo_pair	MRPL30	2	99181079	99197626	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	MRPL32	7	42932200	42948958	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	5	0	FALSE	GAIN	PASS
659_bTo_pair	MRPL33	2	27771717	27988087	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	MRPL34	19	17292609	17306843	FALSE	1155	-0.249305971018279	46	17273895	17821522	0.298322295679939	3	NA	0.298322295679939	3	NA	547627	NA	25	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MRPL35	2	86199355	86213794	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	MRPL36	5	1798386	1801366	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	2	0	FALSE	GAIN	PASS
659_bTo_pair	MRPL37	1	54184041	54225464	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	MRPL38	17	75898643	75905413	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	MRPL39	21	25585656	25607517	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	11	6	FALSE	DIPLOID	PASS
659_bTo_pair	MRPL4	19	10251901	10260045	FALSE	1139	-0.718742930681428	18	10252235	10467338	0.180216333675297	0	0	0.180216333675297	0	0	215103	0	13	9	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MRPL40	22	19431902	19436075	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	5	2	FALSE	CNLOH	PASS
659_bTo_pair	MRPL41	9	137551199	137552555	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	MRPL42	12	93467488	93516213	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	MRPL43	10	100969458	100987515	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	25	3	FALSE	CNLOH	PASS
659_bTo_pair	MRPL44	2	223957404	223967714	FALSE	181	-0.697161202800517	22	222304006	224401731	0.291335969972972	1	0	0.291335969972972	1	0	2097725	1	12	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	MRPL45	17	38297023	38323218	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	8	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MRPL46	15	88459476	88467419	FALSE	923	-0.958549275925123	11	88459674	89218937	0.289956079954009	0	0	0.289956079954009	0	0	759263	0	11	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MRPL47	3	179588285	179604654	FALSE	253	-0.302573270656947	43	179243074	180989661	0.192136715055622	3	NA	0.192136715055622	3	NA	1746587	NA	13	7	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	MRPL48	11	73787316	73865133	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	8	0	FALSE	GAIN	PASS
659_bTo_pair	MRPL49	11	65122183	65127371	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	4	0	FALSE	GAIN	PASS
659_bTo_pair	MRPL50	9	101387633	101398614	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	MRPL51	12	6491886	6493841	FALSE	741	-0.251609480735115	44	4489790	6567957	0.345317016959666	3	1	0.345317016959666	3	1	2078167	2	28	3	0	FALSE	GAIN	PASS
659_bTo_pair	MRPL52	14	22829879	22835037	FALSE	849	-0.198876830204613	48	21522824	22901846	0.365165917639896	3	NA	0.365165917639896	3	NA	1379022	NA	15	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MRPL53	2	74471958	74473322	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MRPL54	19	3762664	3768575	FALSE	1122	-0.653400653967241	21	3157829	4037863	0.140309795179477	0	0	0.140309795179477	0	0	880034	0	27	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MRPL55	1	228106679	228109312	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	MRPL57	13	21176645	21179084	FALSE	821	-0.916323932116457	13	21147296	21604174	0.365165917639896	1	0	0.365165917639896	1	0	456878	1	5	2	1	FALSE	HETLOSS	PASS
659_bTo_pair	MRPL58	17	75012670	75021261	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	MRPL9	1	151759643	151763564	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	7	2	FALSE	DIPLOID	PASS
659_bTo_pair	MRPS10	6	42206801	42217865	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	MRPS11	15	88467453	88480773	FALSE	923	-0.958549275925123	11	88459674	89218937	0.289956079954009	0	0	0.289956079954009	0	0	759263	0	11	8	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MRPS12	19	38930548	38933162	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	MRPS14	1	175010789	175023425	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	MRPS15	1	36455718	36464437	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	MRPS16	10	73248843	73252693	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	4	1	FALSE	CNLOH	PASS
659_bTo_pair	MRPS17	7	55951819	55956501	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	MRPS18A	6	43671303	43687791	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	MRPS18B	6	30617709	30626395	FALSE	379	-0.524744136561063	27	30546321	31270541	1	2	1	1	2	1	724220	1	30	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	MRPS18C	4	83455932	83469735	FALSE	289	-0.397475195823872	39	80335777	83458331	NA	2	NA	NA	2	NA	3122554	NA	19	18	3	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	MRPS2	9	135499984	135504673	FALSE	629	-0.955558414525678	9	134750808	136485014	0.291955377254426	0	0	0.291955377254426	0	0	1734206	0	30	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MRPS21	1	150293720	150308979	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	MRPS22	3	139005806	139357223	FALSE	245	0.794201723555962	75	138633038	139044349	0.364342740527346	10	NA	0.364342740527346	10	NA	411311	NA	8	18	0	TRUE	AMP	PASS
659_bTo_pair	MRPS23	17	57834781	57850056	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MRPS24	7	43866558	43869893	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	4	0	FALSE	GAIN	PASS
659_bTo_pair	MRPS25	3	15042460	15065335	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	MRPS26	20	3045945	3048254	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	MRPS27	5	72219409	72320646	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	MRPS28	8	79918717	80030289	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	3	0	FALSE	GAIN	PASS
659_bTo_pair	MRPS30	5	44808925	44820428	FALSE	317	2.57605692182142	115	44300491	44809340	0.364342740527346	41	NA	0.364342740527346	41	NA	508849	NA	2	8	0	TRUE	AMP	PASS
659_bTo_pair	MRPS31	13	40729135	40771173	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	MRPS33	7	141002610	141015228	FALSE	500	-0.745042700177313	19	140929950	142218464	0.365165917639896	1	0	0.365165917639896	1	0	1288514	1	15	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	MRPS34	16	1771890	1773155	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	3	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MRPS35	12	27710773	27756295	FALSE	759	-0.427669886187443	30	25503824	31088026	1	2	1	1	2	1	5584202	1	28	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	MRPS36	5	69217760	69230129	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	MRPS5	2	95087207	95149434	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	MRPS6	21	34073224	34143034	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	MRPS7	17	75261674	75266373	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	MRPS9	2	105037983	105099960	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	MRRF	9	122264603	122331343	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	MRS2	6	24402908	24426194	FALSE	373	-0.695027086668472	22	24174718	26017145	0.291335969972972	1	0	0.291335969972972	1	0	1842427	1	23	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	MRTFA	22	40410281	40636702	FALSE	1267	-0.448885551917151	34	39313004	41087696	NA	2	NA	NA	2	NA	1774692	NA	24	20	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MRTFB	16	14071321	14266773	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	25	0	FALSE	DIPLOID	PASS
659_bTo_pair	MRTO4	1	19251539	19260128	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	MRVI1	11	10573091	10693988	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	23	1	FALSE	DIPLOID	PASS
659_bTo_pair	MS4A1	11	60455752	60470760	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	8	2	FALSE	GAIN	PASS
659_bTo_pair	MS4A10	11	60785348	60801305	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	8	0	FALSE	GAIN	PASS
659_bTo_pair	MS4A12	11	60492778	60507430	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	7	0	FALSE	GAIN	PASS
659_bTo_pair	MS4A13	11	60515413	60542721	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	5	3	FALSE	GAIN	PASS
659_bTo_pair	MS4A14	11	60378530	60417756	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	18	4	FALSE	GAIN	PASS
659_bTo_pair	MS4A15	11	60756953	60776732	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	6	1	FALSE	GAIN	PASS
659_bTo_pair	MS4A18	11	60729304	60744212	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	8	0	FALSE	GAIN	PASS
659_bTo_pair	MS4A2	11	60088261	60098466	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	7	0	FALSE	GAIN	PASS
659_bTo_pair	MS4A3	11	60056587	60071128	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	6	0	FALSE	GAIN	PASS
659_bTo_pair	MS4A4A	11	60185702	60317944	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	11	0	FALSE	GAIN	PASS
659_bTo_pair	MS4A4E	11	60201253	60243088	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	4	0	FALSE	GAIN	PASS
659_bTo_pair	MS4A5	11	60429589	60455214	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	5	0	FALSE	GAIN	PASS
659_bTo_pair	MS4A6A	11	60172014	60184666	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	7	0	FALSE	GAIN	PASS
659_bTo_pair	MS4A6E	11	60334831	60396596	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	10	1	FALSE	GAIN	PASS
659_bTo_pair	MS4A7	11	60378482	60395951	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	6	1	FALSE	GAIN	PASS
659_bTo_pair	MS4A8	11	60699574	60715811	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	6	0	FALSE	GAIN	PASS
659_bTo_pair	MSANTD1	4	3244369	3271738	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	6	0	FALSE	GAIN	PASS
659_bTo_pair	MSANTD2	11	124766498	124800673	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	MSANTD3	9	100427156	100451711	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	MSANTD3-TMEFF1	9	100442271	100577636	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	MSANTD4	11	105995623	106022403	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	MSC	8	71841549	71844468	FALSE	553	-0.248188717260806	46	68331252	73878866	0.298322295679939	3	NA	0.298322295679939	3	NA	5547614	NA	20	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MSGN1	2	17816496	17817101	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MSH2	2	47402969	47663146	TRUE	109	0.265429574535633	63	47340240	48375433	0.364342740527346	6	NA	0.364342740527346	6	NA	1035193	NA	6	70	1	FALSE	AMP (many states)	PASS
659_bTo_pair	MSH3	5	80654648	80876460	TRUE	326	0.37087457017442	65	80654497	80960844	0.364342740527346	6	NA	0.364342740527346	6	NA	306347	NA	3	37	0	FALSE	AMP (many states)	PASS
659_bTo_pair	MSH4	1	75796882	75913238	FALSE	25	-0.394411030612058	39	74026891	77942032	NA	2	NA	NA	2	NA	3915141	NA	22	21	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MSH5	6	31739948	31762834	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	24	0	FALSE	HETLOSS	PASS
659_bTo_pair	MSH5-SAPCD1	6	31740020	31764851	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	29	0	FALSE	HETLOSS	PASS
659_bTo_pair	MSH6	2	47695530	47810101	TRUE	109	0.265429574535633	63	47340240	48375433	0.364342740527346	6	NA	0.364342740527346	6	NA	1035193	NA	6	45	1	FALSE	AMP (many states)	PASS
659_bTo_pair	MSI1	12	120341330	120369180	FALSE	810	-0.438737881374958	34	120127967	120903912	NA	2	NA	NA	2	NA	775945	NA	20	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MSI2	17	57255851	57684685	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	14	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MSL1	17	40122298	40136916	FALSE	1030	-0.735138103765796	19	39868404	40278196	0.365165917639896	1	0	0.365165917639896	1	0	409792	1	14	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	MSL2	3	136148922	136197241	FALSE	243	0.194698893310263	62	134795430	136855479	0.364342740527346	5	NA	0.364342740527346	5	NA	2060049	NA	6	8	0	FALSE	AMP (many states)	PASS
659_bTo_pair	MSL3	23	11758159	11775772	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	15	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	MSLN	16	760762	768865	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	16	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MSLNL	16	769428	783370	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	16	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MSMB	10	46033307	46046269	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	3	0	FALSE	CNLOH	PASS
659_bTo_pair	MSMO1	4	165327623	165343160	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	MSMP	9	35752990	35756613	FALSE	591	0.73474920581053	74	35684233	36036976	0.364342740527346	9	NA	0.364342740527346	9	NA	352743	NA	17	3	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	MSN	23	65588377	65741931	FALSE	1307	-0.0742378241560309	55	64268602	66615968	0.328696605851359	4	NA	0.328696605851359	4	NA	2347366	NA	8	14	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MSR1	8	16107878	16567490	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	MSRA	8	10054268	10428891	FALSE	515	-0.798201426688095	16	9008002	10611590	0.365165917639896	1	0	0.365165917639896	1	0	1603588	1	7	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	MSRB1	16	1938210	1943326	FALSE	937	-1.70810798820954	2	1834331	1946734	0.364342740527346	0	0	0.364342740527346	0	0	112403	0	5	4	0	FALSE	HOMDEL	PASS
659_bTo_pair	MSRB2	10	23095506	23122013	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	5	1	FALSE	CNLOH	PASS
659_bTo_pair	MSRB3	12	65278643	65491430	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	MSS51	10	73423579	73433561	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	8	0	FALSE	CNLOH	PASS
659_bTo_pair	MST1	3	49683947	49689501	TRUE	219	0.670949051201359	72	49683278	49694592	0.364342740527346	8	NA	0.364342740527346	8	NA	11314	NA	3	19	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	MST1R	3	49887002	49903873	FALSE	221	0.801022394133581	75	49886991	49903897	0.364342740527346	10	NA	0.364342740527346	10	NA	16906	NA	1	26	4	FALSE	AMP	PASS
659_bTo_pair	MSTN	2	190055697	190062729	FALSE	160	0.966258345616877	78	189775687	190057466	0.364342740527346	11	NA	0.364342740527346	11	NA	281779	NA	4	6	0	TRUE	AMP	PASS
659_bTo_pair	MSTO1	1	155610205	155614967	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	MSX1	4	4859666	4863936	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	5	0	FALSE	GAIN	PASS
659_bTo_pair	MSX2	5	174724533	174730893	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	MT1A	16	56638666	56640087	FALSE	968	-0.505434692233225	30	51151209	56683230	1	2	1	1	2	1	5532021	1	34	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	MT1B	16	56651899	56653204	FALSE	968	-0.505434692233225	30	51151209	56683230	1	2	1	1	2	1	5532021	1	34	3	2	FALSE	DIPLOID	PASS
659_bTo_pair	MT1E	16	56625475	56627112	FALSE	968	-0.505434692233225	30	51151209	56683230	1	2	1	1	2	1	5532021	1	34	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	MT1F	16	56657694	56660698	FALSE	968	-0.505434692233225	30	51151209	56683230	1	2	1	1	2	1	5532021	1	34	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	MT1G	16	56666731	56668065	FALSE	968	-0.505434692233225	30	51151209	56683230	1	2	1	1	2	1	5532021	1	34	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	MT1H	16	56669814	56671129	FALSE	968	-0.505434692233225	30	51151209	56683230	1	2	1	1	2	1	5532021	1	34	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	MT1HL1	1	237004103	237004418	FALSE	82	-0.550278310688863	27	235196044	241494870	1	2	1	1	2	1	6298826	1	22	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	MT1M	16	56632233	56633986	FALSE	968	-0.505434692233225	30	51151209	56683230	1	2	1	1	2	1	5532021	1	34	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	MT1X	16	56682424	56684196	FALSE	968	-0.505434692233225	30	51151209	56683230	1	2	1	1	2	1	5532021	1	34	3	0	TRUE	DIPLOID	PASS
659_bTo_pair	MT2A	16	56608199	56609497	FALSE	968	-0.505434692233225	30	51151209	56683230	1	2	1	1	2	1	5532021	1	34	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	MT3	16	56589074	56591088	FALSE	968	-0.505434692233225	30	51151209	56683230	1	2	1	1	2	1	5532021	1	34	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	MT4	16	56565049	56568957	FALSE	968	-0.505434692233225	30	51151209	56683230	1	2	1	1	2	1	5532021	1	34	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	MTA1	14	105419820	105470729	FALSE	885	-0.488568816150345	30	104868462	105529782	1	2	1	1	2	1	661320	1	18	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	MTA2	11	62593214	62601840	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	18	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MTA3	2	42494569	42756947	FALSE	106	-0.392858868113437	39	42335725	46184779	NA	2	NA	NA	2	NA	3849054	NA	22	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MTAP	9	21802543	21937651	TRUE	583	-0.387007513258167	39	20715331	21839114	NA	2	NA	NA	2	NA	1123783	NA	21	51	1	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	MTBP	8	120445400	120542133	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	26	2	FALSE	GAIN	PASS
659_bTo_pair	MTCH1	6	36968141	36986298	FALSE	395	-0.486049210799182	34	36704239	37028105	NA	2	NA	NA	2	NA	323866	NA	7	13	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MTCH2	11	47617315	47642623	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	MTCL1	18	8705661	8832778	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	27	1	FALSE	GAIN	PASS
659_bTo_pair	MTCP1	23	155061622	155147937	FALSE	1341	-0.0231097163941018	55	154552015	155545250	0.328696605851359	4	NA	0.328696605851359	4	NA	993235	NA	23	16	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MTDH	8	97644179	97728770	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	14	1	FALSE	GAIN	PASS
659_bTo_pair	MTERF1	7	91692008	91880720	FALSE	479	-0.448308050861149	30	87602941	92590330	1	2	1	1	2	1	4987389	1	30	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	MTERF2	12	106977291	106987166	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	MTERF3	8	96239398	96261610	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	9	0	FALSE	GAIN	PASS
659_bTo_pair	MTERF4	2	241072169	241102332	FALSE	194	-0.588828356865968	23	240025214	241817025	0.186356639256811	1	0	0.186356639256811	1	0	1791811	1	34	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	MTF1	1	37809567	37859620	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	MTF2	1	93079235	93139081	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	MTFMT	15	65001512	65029639	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	MTFP1	22	30425530	30429053	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	4	0	FALSE	CNLOH	PASS
659_bTo_pair	MTFR1	8	65644734	65771261	FALSE	550	-0.186881774239562	48	60208949	67746087	0.365165917639896	3	NA	0.365165917639896	3	NA	7537138	NA	33	18	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MTFR1L	1	25818640	25832942	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	MTFR2	6	136231024	136250335	FALSE	427	-0.614116824618693	26	135285680	137161691	NA	2	NA	NA	2	NA	1876011	NA	10	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MTG1	10	133394094	133421307	FALSE	676	-0.612597388333807	25	132187132	133626712	0.365165917639896	1	0	0.365165917639896	1	0	1439580	1	27	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	MTG2	20	62183029	62203568	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	MTHFD1	14	64388031	64463457	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	27	1	FALSE	DIPLOID	PASS
659_bTo_pair	MTHFD1L	6	150865549	151101887	FALSE	435	1.72328230019646	97	150599864	150866015	0.364342740527346	21	NA	0.364342740527346	21	NA	266151	NA	2	29	1	TRUE	AMP	PASS
659_bTo_pair	MTHFD2	2	74198562	74217565	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MTHFD2L	4	74114174	74303099	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	MTHFR	1	11785723	11806920	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	20	5	FALSE	DIPLOID	PASS
659_bTo_pair	MTHFS	15	79833585	79897379	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	MTHFSD	16	86530176	86555235	FALSE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	MTIF2	2	55236595	55269347	FALSE	111	-0.244883980498374	46	54612139	55346218	0.298322295679939	3	NA	0.298322295679939	3	NA	734079	NA	7	13	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	MTIF3	13	27435643	27450591	FALSE	824	-0.820211361281197	14	23365275	27988570	0.365165917639896	1	0	0.365165917639896	1	0	4623295	1	32	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	MTLN	2	110211529	110245420	FALSE	134	-0.415117895462051	39	108786846	111117811	NA	2	NA	NA	2	NA	2330965	NA	16	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MTM1	23	150568619	150673322	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	14	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	MTMR1	23	150692971	150765103	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	16	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	MTMR10	15	30938941	30991607	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	MTMR11	1	149928651	149936869	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	MTMR12	5	32226994	32313009	FALSE	312	-0.206081392785099	47	24487677	35857105	0.365165917639896	3	1	0.365165917639896	3	1	11369428	2	27	18	0	FALSE	GAIN	PASS
659_bTo_pair	MTMR14	3	9649433	9702393	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	MTMR2	11	95832882	95925315	FALSE	717	-0.427991611956568	34	94512673	100992623	NA	2	NA	NA	2	NA	6479950	NA	19	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MTMR3	22	29883155	30030866	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	25	0	FALSE	CNLOH	PASS
659_bTo_pair	MTMR4	17	58489529	58517905	FALSE	1058	-0.423419268198233	34	58422367	59890994	NA	2	NA	NA	2	NA	1468627	NA	20	24	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MTMR6	13	25246201	25288009	FALSE	824	-0.820211361281197	14	23365275	27988570	0.365165917639896	1	0	0.365165917639896	1	0	4623295	1	32	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	MTMR7	8	17298030	17413528	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	MTMR8	23	64268081	64395431	FALSE	1307	-0.0742378241560309	55	64268602	66615968	0.328696605851359	4	NA	0.328696605851359	4	NA	2347366	NA	8	16	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MTMR9	8	11284416	11328146	FALSE	516	-0.746159577374248	19	10611830	11564127	0.365165917639896	1	0	0.365165917639896	1	0	952297	1	9	10	3	FALSE	HETLOSS	PASS
659_bTo_pair	MTNR1A	4	186533655	186555567	FALSE	305	-0.853036814117495	12	184629284	186555336	0.365165917639896	1	0	0.365165917639896	1	0	1926052	1	22	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	MTNR1B	11	92969720	92985066	FALSE	715	-0.44311716102168	34	90214063	94410681	NA	2	NA	NA	2	NA	4196618	NA	16	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MTO1	6	73461578	73509236	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	MTOR	1	11106535	11262507	FALSE	3	0.297479534180633	63	11098061	11262547	0.364342740527346	6	NA	0.364342740527346	6	NA	164486	NA	3	79	0	FALSE	AMP (many states)	PASS
659_bTo_pair	MTPAP	10	30309801	30374448	FALSE	638	-0.441875687518437	32	27112127	31908266	0.365165917639896	2	0	0.365165917639896	2	0	4796139	2	18	10	1	FALSE	CNLOH	PASS
659_bTo_pair	MTPN	7	135926761	135977353	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	MTR	1	236795281	236903981	FALSE	82	-0.550278310688863	27	235196044	241494870	1	2	1	1	2	1	6298826	1	22	35	3	FALSE	DIPLOID	PASS
659_bTo_pair	MTREX	5	55307760	55425581	FALSE	319	-0.764156631411702	19	50399919	56556187	0.365165917639896	1	0	0.365165917639896	1	0	6156268	1	28	28	0	FALSE	HETLOSS	PASS
659_bTo_pair	MTRF1	13	41216369	41263577	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	10	2	FALSE	HETLOSS	PASS
659_bTo_pair	MTRF1L	6	152987362	153002685	FALSE	440	-0.500001062559341	30	152129628	156771069	1	2	1	1	2	1	4641441	1	14	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	MTRNR2L1	17	22523111	22524663	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	MTRNR2L10	23	55181391	55182920	FALSE	1303	0.0232492223836125	56	53426353	57488811	0.365165917639896	4	NA	0.365165917639896	4	NA	4062458	NA	32	1	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MTRNR2L3	20	57358442	57359980	FALSE	1221	-0.44936578355072	34	56249153	58715213	NA	2	NA	NA	2	NA	2466060	NA	27	1	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MTRNR2L4	16	3370979	3372740	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	1	0	FALSE	HETLOSS	PASS
659_bTo_pair	MTRNR2L5	10	55599303	55600041	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	1	0	FALSE	CNLOH	PASS
659_bTo_pair	MTRNR2L6	7	142666272	142667718	FALSE	501	-0.513243901966068	29	142219948	142940594	NA	2	NA	NA	2	NA	720646	NA	9	1	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MTRNR2L7	10	37601440	37602974	FALSE	640	-0.421497241268382	32	32269100	43094667	0.365165917639896	2	0	0.365165917639896	2	0	10825567	2	20	1	0	FALSE	CNLOH	PASS
659_bTo_pair	MTRNR2L8	11	10507887	10509189	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	MTRR	5	7851186	7906025	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	27	4	FALSE	GAIN	PASS
659_bTo_pair	MTSS1	8	124550790	124728429	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	18	1	FALSE	GAIN	PASS
659_bTo_pair	MTSS1L	16	70661204	70686066	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	18	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MTTP	4	99563761	99623999	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	19	1	FALSE	DIPLOID	PASS
659_bTo_pair	MTURN	7	30134810	30162762	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	3	0	FALSE	GAIN	PASS
659_bTo_pair	MTUS1	8	17643795	17800917	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	27	2	FALSE	HETLOSS	PASS
659_bTo_pair	MTUS2	13	28820348	29505947	FALSE	828	-0.893717680890687	13	28659152	32311865	0.365165917639896	1	0	0.365165917639896	1	0	3652713	1	17	23	1	FALSE	HETLOSS	PASS
659_bTo_pair	MTX1	1	155208699	155213824	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	MTX2	2	176269395	176338025	FALSE	153	-0.469039793655258	34	172736055	177217715	NA	2	NA	NA	2	NA	4481660	NA	28	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MTX3	5	79976731	79991265	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	MUC1	1	155185824	155192916	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	MUC12	7	100969623	101018949	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	62	26	FALSE	HETLOSS	PASS
659_bTo_pair	MUC13	3	124905442	124953819	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	12	2	FALSE	GAIN	PASS
659_bTo_pair	MUC15	11	26559033	26572233	FALSE	689	-0.596895402665017	26	22674905	26692543	NA	2	NA	NA	2	NA	4017638	NA	7	7	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MUC16	19	8848844	8981342	FALSE	1133	0.102059933818524	57	8849033	8934901	0.334914946507217	5	2	0.334914946507217	5	2	85868	3	1	226	58	TRUE	AMP	PASS
659_bTo_pair	MUC17	7	101020072	101058745	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	60	2	TRUE	HETLOSS	PASS
659_bTo_pair	MUC19	12	40393395	40570832	FALSE	761	-0.518834393047475	27	38323923	40473121	1	2	1	1	2	1	2149198	1	8	196	35	TRUE	DIPLOID	PASS
659_bTo_pair	MUC2	11	1074875	1110511	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	61	12	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MUC20	3	195720882	195741123	FALSE	269	-0.263219948753545	44	189957970	195888442	0.345317016959666	3	1	0.345317016959666	3	1	5930472	2	31	10	6	FALSE	GAIN	PASS
659_bTo_pair	MUC21	6	30983718	30989903	FALSE	379	-0.524744136561063	27	30546321	31270541	1	2	1	1	2	1	724220	1	30	8	4	FALSE	DIPLOID	PASS
659_bTo_pair	MUC22	6	31010474	31035402	FALSE	379	-0.524744136561063	27	30546321	31270541	1	2	1	1	2	1	724220	1	30	23	4	FALSE	DIPLOID	PASS
659_bTo_pair	MUC3A	7	100949555	100968346	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	25	20	FALSE	HETLOSS	PASS
659_bTo_pair	MUC4	3	195746765	195812277	FALSE	269	-0.263219948753545	44	189957970	195888442	0.345317016959666	3	1	0.345317016959666	3	1	5930472	2	31	42	2	FALSE	GAIN	PASS
659_bTo_pair	MUC5AC	11	1157953	1201138	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	42	8	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MUC5B	11	1223066	1262172	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	97	0	TRUE	HOMDEL	suppress_large_homdel
659_bTo_pair	MUC6	11	1012821	1036706	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	45	9	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MUC7	4	70430492	70482997	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	MUCL1	12	54830519	54858393	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	MUCL3	6	30934523	30954221	FALSE	379	-0.524744136561063	27	30546321	31270541	1	2	1	1	2	1	724220	1	30	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	MUL1	1	20499448	20508161	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	MUM1	19	1354711	1378431	FALSE	1116	-0.668595541323287	22	1229189	1605424	0.291335969972972	1	0	0.291335969972972	1	0	376235	1	21	17	1	FALSE	HETLOSS	PASS
659_bTo_pair	MUM1L1	23	106168305	106208956	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	9	0	FALSE	AMP (many states)	PASS
659_bTo_pair	MUS81	11	65857126	65867653	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	17	0	FALSE	GAIN	PASS
659_bTo_pair	MUSK	9	110668771	110801620	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	19	2	FALSE	DIPLOID	PASS
659_bTo_pair	MUSTN1	3	52833114	52835219	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	MUT	6	49430360	49463191	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	MUTYH	1	45329163	45340470	TRUE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	20	1	FALSE	DIPLOID	PASS
659_bTo_pair	MVB12A	19	17405722	17433724	FALSE	1155	-0.249305971018279	46	17273895	17821522	0.298322295679939	3	NA	0.298322295679939	3	NA	547627	NA	25	9	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	MVB12B	9	126326849	126507041	FALSE	619	-0.820686000870706	14	125203036	127778681	0.365165917639896	1	0	0.365165917639896	1	0	2575645	1	23	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	MVD	16	88651935	88663161	FALSE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	MVK	12	109573255	109598117	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	MVP	16	29820394	29848039	FALSE	965	-0.735005669796309	19	28989573	29982749	0.365165917639896	1	0	0.365165917639896	1	0	993176	1	25	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	MX1	21	41420304	41459214	FALSE	1230	-0.572411047461507	26	38805300	41452836	NA	2	NA	NA	2	NA	2647536	NA	17	15	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	MX2	21	41361943	41409390	FALSE	1230	-0.572411047461507	26	38805300	41452836	NA	2	NA	NA	2	NA	2647536	NA	17	16	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MXD1	2	69897688	69942945	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	MXD3	5	177301461	177312757	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	MXD4	4	2247432	2262294	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	6	0	FALSE	GAIN	PASS
659_bTo_pair	MXI1	10	110207605	110287365	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	8	0	FALSE	CNLOH	PASS
659_bTo_pair	MXRA5	23	3308565	3346641	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	37	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	MXRA7	17	76672551	76711016	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	MXRA8	1	1352689	1361777	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	12	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MYADM	19	53866223	53876437	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	MYADML2	17	81939645	81947233	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	MYB	6	135181315	135219173	FALSE	426	2.07336010680897	105	135181403	135219069	0.364342740527346	28	NA	0.364342740527346	28	NA	37666	NA	1	69	0	FALSE	AMP	PASS
659_bTo_pair	MYBBP1A	17	4538897	4555631	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	29	1	FALSE	HETLOSS	PASS
659_bTo_pair	MYBL1	8	66562175	66614247	FALSE	550	-0.186881774239562	48	60208949	67746087	0.365165917639896	3	NA	0.365165917639896	3	NA	7537138	NA	33	18	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MYBL2	20	43667019	43716496	FALSE	1210	-0.476296426145969	34	43513997	45110019	NA	2	NA	NA	2	NA	1596022	NA	26	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MYBPC1	12	101568353	101686018	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	33	3	FALSE	DIPLOID	PASS
659_bTo_pair	MYBPC2	19	50432903	50466321	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	28	1	FALSE	HETLOSS	PASS
659_bTo_pair	MYBPC3	11	47331397	47352702	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	37	1	FALSE	DIPLOID	PASS
659_bTo_pair	MYBPH	1	203167811	203175813	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	MYBPHL	1	109292365	109307041	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	MYC	8	127735434	127741434	FALSE	564	3.31553061947701	121	127416190	127746804	0.364342740527346	71	NA	0.364342740527346	71	NA	330614	NA	2	18	5	FALSE	AMP	PASS
659_bTo_pair	MYCBP	1	38862964	38874105	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	MYCBP2	13	77044655	77327050	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	98	3	FALSE	CNLOH	PASS
659_bTo_pair	MYCBPAP	17	50508384	50531501	FALSE	1053	-0.561829441831031	26	49646906	50626743	NA	2	NA	NA	2	NA	979837	NA	25	20	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MYCL	1	39895426	39902256	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	20	1	FALSE	DIPLOID	PASS
659_bTo_pair	MYCN	2	15940564	15947007	FALSE	92	1.92789159753946	101	15939253	15946921	0.364342740527346	25	NA	0.364342740527346	25	NA	7668	NA	1	13	0	FALSE	AMP	PASS
659_bTo_pair	MYCT1	6	152697895	152724567	FALSE	440	-0.500001062559341	30	152129628	156771069	1	2	1	1	2	1	4641441	1	14	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	MYD88	3	38138478	38143022	FALSE	211	2.36605039865891	111	38137008	38143013	0.364342740527346	35	NA	0.364342740527346	35	NA	6005	NA	2	13	1	FALSE	AMP	PASS
659_bTo_pair	MYDGF	19	4641374	4670370	FALSE	1124	-0.62008955817668	23	4168484	5151543	0.186356639256811	1	0	0.186356639256811	1	0	983059	1	28	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	MYEF2	15	48134631	48178517	FALSE	904	-0.666047806656427	20	44736698	49422632	0.365165917639896	1	0	0.365165917639896	1	0	4685934	1	30	26	0	FALSE	HETLOSS	PASS
659_bTo_pair	MYEOV	11	69294138	69367726	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	5	1	FALSE	GAIN	PASS
659_bTo_pair	MYF5	12	80716912	80719673	FALSE	793	-0.510041181295141	29	76355979	85286979	NA	2	NA	NA	2	NA	8931000	NA	22	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MYF6	12	80707498	80709474	FALSE	793	-0.510041181295141	29	76355979	85286979	NA	2	NA	NA	2	NA	8931000	NA	22	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MYH1	17	10492307	10518543	FALSE	1006	-0.894220729735546	12	8370429	10825247	0.365165917639896	1	0	0.365165917639896	1	0	2454818	1	31	41	2	FALSE	HETLOSS	PASS
659_bTo_pair	MYH10	17	8474205	8630761	FALSE	1006	-0.894220729735546	12	8370429	10825247	0.365165917639896	1	0	0.365165917639896	1	0	2454818	1	31	44	1	FALSE	HETLOSS	PASS
659_bTo_pair	MYH11	16	15703172	15857033	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	45	1	FALSE	DIPLOID	PASS
659_bTo_pair	MYH13	17	10300865	10373130	FALSE	1006	-0.894220729735546	12	8370429	10825247	0.365165917639896	1	0	0.365165917639896	1	0	2454818	1	31	41	6	FALSE	HETLOSS	PASS
659_bTo_pair	MYH14	19	50188186	50310544	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	47	6	FALSE	HETLOSS	PASS
659_bTo_pair	MYH15	3	108380369	108529322	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	43	0	FALSE	GAIN	PASS
659_bTo_pair	MYH2	17	10521148	10549957	FALSE	1006	-0.894220729735546	12	8370429	10825247	0.365165917639896	1	0	0.365165917639896	1	0	2454818	1	31	41	6	FALSE	HETLOSS	PASS
659_bTo_pair	MYH3	17	10628526	10657309	FALSE	1006	-0.894220729735546	12	8370429	10825247	0.365165917639896	1	0	0.365165917639896	1	0	2454818	1	31	41	2	FALSE	HETLOSS	PASS
659_bTo_pair	MYH4	17	10443290	10469559	FALSE	1006	-0.894220729735546	12	8370429	10825247	0.365165917639896	1	0	0.365165917639896	1	0	2454818	1	31	41	0	FALSE	HETLOSS	PASS
659_bTo_pair	MYH6	14	23381990	23408277	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	43	1	FALSE	DIPLOID	PASS
659_bTo_pair	MYH7	14	23412738	23435718	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	41	2	FALSE	DIPLOID	PASS
659_bTo_pair	MYH7B	20	34975403	35002437	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	45	2	FALSE	DIPLOID	PASS
659_bTo_pair	MYH8	17	10390322	10421950	FALSE	1006	-0.894220729735546	12	8370429	10825247	0.365165917639896	1	0	0.365165917639896	1	0	2454818	1	31	40	0	FALSE	HETLOSS	PASS
659_bTo_pair	MYH9	22	36281277	36388067	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	44	0	FALSE	CNLOH	PASS
659_bTo_pair	MYL1	2	210290150	210315190	FALSE	171	-0.69211072472077	22	209829280	210677970	0.291335969972972	1	0	0.291335969972972	1	0	848690	1	7	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	MYL10	7	101613325	101629296	FALSE	484	-0.570670723449775	26	101042591	102111653	NA	2	NA	NA	2	NA	1069062	NA	15	6	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MYL12A	18	3247481	3256236	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	4	0	FALSE	GAIN	PASS
659_bTo_pair	MYL12B	18	3261479	3278431	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	3	0	FALSE	GAIN	PASS
659_bTo_pair	MYL2	12	110910819	110920722	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	MYL3	3	46857872	46882169	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	MYL4	17	47200446	47223679	FALSE	1046	-0.746772159255206	19	45395806	47696360	0.365165917639896	1	0	0.365165917639896	1	0	2300554	1	26	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	MYL5	4	673580	682033	FALSE	272	-0.300029378244858	40	85877	1745020	0.308149309490068	3	1	0.308149309490068	3	1	1659143	2	29	9	1	FALSE	GAIN	PASS
659_bTo_pair	MYL6	12	56158161	56163496	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MYL6B	12	56152256	56159647	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MYL7	7	44138864	44141332	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	7	0	FALSE	GAIN	PASS
659_bTo_pair	MYL9	20	36541484	36551447	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	MYLIP	6	16129125	16148248	FALSE	370	-0.377368469329801	39	15246548	20212233	NA	2	NA	NA	2	NA	4965685	NA	18	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MYLK	3	123610049	123884331	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	39	2	FALSE	GAIN	PASS
659_bTo_pair	MYLK2	20	31819308	31834689	FALSE	1201	-0.583226555890856	26	31757461	32331296	NA	2	NA	NA	2	NA	573835	NA	13	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MYLK3	16	46703369	46790407	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	MYLK4	6	2663629	2750966	FALSE	366	-0.56930463675583	26	486737	3019480	NA	2	NA	NA	2	NA	2532743	NA	12	12	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MYLPF	16	30370934	30377991	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	MYMK	9	133514586	133528612	FALSE	627	-0.867007674319489	12	132986776	134157867	0.365165917639896	1	0	0.365165917639896	1	0	1171091	1	28	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	MYMX	6	44216939	44218236	FALSE	403	-0.460377194073257	34	44113878	44253574	NA	2	NA	NA	2	NA	139696	NA	6	1	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MYNN	3	169772831	169789716	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	11	1	FALSE	GAIN	PASS
659_bTo_pair	MYO10	5	16661914	16936276	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	49	3	FALSE	GAIN	PASS
659_bTo_pair	MYO15A	17	18108706	18179806	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	78	0	FALSE	CNLOH	PASS
659_bTo_pair	MYO15B	17	75588058	75626501	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	66	8	FALSE	DIPLOID	PASS
659_bTo_pair	MYO16	13	108596152	109208007	FALSE	842	-0.555564796404534	26	103046205	109206791	NA	2	NA	NA	2	NA	6160586	NA	9	42	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MYO18A	17	29071124	29180412	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	49	2	FALSE	DIPLOID	PASS
659_bTo_pair	MYO18B	22	25742144	26031041	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	53	4	FALSE	CNLOH	PASS
659_bTo_pair	MYO19	17	36495633	36543435	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	32	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MYO1A	12	57028517	57051198	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	28	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MYO1B	2	191245185	191425389	FALSE	161	-0.46057869782823	30	190057617	197310624	1	2	1	1	2	1	7253007	1	23	30	0	FALSE	DIPLOID	PASS
659_bTo_pair	MYO1C	17	1464186	1492812	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	32	6	FALSE	HETLOSS	PASS
659_bTo_pair	MYO1D	17	32492522	32877177	FALSE	1022	-0.670211431189836	22	32030679	35026358	0.291335969972972	1	0	0.291335969972972	1	0	2995679	1	23	25	3	FALSE	HETLOSS	PASS
659_bTo_pair	MYO1E	15	59132434	59372900	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	34	3	FALSE	HETLOSS	PASS
659_bTo_pair	MYO1F	19	8520790	8577577	FALSE	1132	-0.583194501817822	26	7916513	8843246	NA	2	NA	NA	2	NA	926733	NA	25	30	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MYO1G	7	44962662	44979098	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	24	1	FALSE	GAIN	PASS
659_bTo_pair	MYO1H	12	109347903	109455523	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	32	0	FALSE	DIPLOID	PASS
659_bTo_pair	MYO3A	10	25934071	26212536	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	36	0	FALSE	CNLOH	PASS
659_bTo_pair	MYO3B	2	170178145	170655171	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	36	5	FALSE	DIPLOID	PASS
659_bTo_pair	MYO5A	15	52307283	52529050	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	45	3	FALSE	HETLOSS	PASS
659_bTo_pair	MYO5B	18	49822813	50195093	FALSE	1103	-0.712987700962632	19	48029643	51023578	0.365165917639896	1	0	0.365165917639896	1	0	2993935	1	20	42	2	FALSE	HETLOSS	PASS
659_bTo_pair	MYO5C	15	52192322	52295798	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	43	3	FALSE	HETLOSS	PASS
659_bTo_pair	MYO6	6	75749192	75919537	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	35	0	FALSE	DIPLOID	PASS
659_bTo_pair	MYO7A	11	77128264	77215241	FALSE	710	-0.314972965919996	43	76659622	77285059	0.192136715055622	3	NA	0.192136715055622	3	NA	625437	NA	8	51	4	FALSE	GAIN (many states)	PASS
659_bTo_pair	MYO7B	2	127535802	127637729	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	51	4	FALSE	DIPLOID	PASS
659_bTo_pair	MYO9A	15	71822289	72118577	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	52	0	FALSE	HETLOSS	PASS
659_bTo_pair	MYO9B	19	17075781	17214537	FALSE	1154	-0.533888138892061	27	16361883	17271664	1	2	1	1	2	1	909781	1	23	48	8	FALSE	DIPLOID	PASS
659_bTo_pair	MYOC	1	171635417	171652683	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	MYOCD	17	12665890	12768949	FALSE	1009	-0.493836167698037	33	12666172	16027364	0.344071079426502	2	0	0.344071079426502	2	0	3361192	2	21	20	1	FALSE	CNLOH	PASS
659_bTo_pair	MYOCOS	1	171600621	171638799	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	MYOD1	11	17719568	17722131	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	MYOF	10	93306429	93482317	FALSE	662	-0.410954559094016	36	89715119	94762760	0.365165917639896	2	0	0.365165917639896	2	0	5047641	2	33	53	3	FALSE	CNLOH	PASS
659_bTo_pair	MYOG	1	203083132	203086036	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	MYOM1	18	3066807	3220108	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	42	7	FALSE	GAIN	PASS
659_bTo_pair	MYOM2	8	2045040	2165552	FALSE	510	-0.906181747703467	12	166288	7823395	0.365165917639896	1	0	0.365165917639896	1	0	7657107	1	48	36	4	FALSE	HETLOSS	PASS
659_bTo_pair	MYOM3	1	24056035	24112175	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	41	5	FALSE	DIPLOID	PASS
659_bTo_pair	MYORG	9	34366670	34376853	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	9	1	FALSE	CNLOH	PASS
659_bTo_pair	MYOT	5	137867791	137887851	FALSE	336	-0.752536733071469	19	135941639	138575278	0.365165917639896	1	0	0.365165917639896	1	0	2633639	1	24	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	MYOZ1	10	73631654	73641757	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	6	1	FALSE	CNLOH	PASS
659_bTo_pair	MYOZ2	4	119135784	119187789	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	MYOZ3	5	150660874	150679365	FALSE	350	-0.819899512516675	16	150444373	153997804	0.365165917639896	1	0	0.365165917639896	1	0	3553431	1	25	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	MYPN	10	68106117	68212017	FALSE	649	-0.498971247588349	34	63133428	68527348	NA	2	NA	NA	2	NA	5393920	NA	15	26	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MYPOP	19	45890020	45902604	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MYRF	11	61752642	61788518	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	32	0	FALSE	GAIN	PASS
659_bTo_pair	MYRFL	12	69825304	69959097	FALSE	790	-0.377310724638489	39	69586733	71157609	NA	2	NA	NA	2	NA	1570876	NA	11	25	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	MYRIP	3	39808914	40260321	FALSE	212	-0.750996176556328	19	38165958	40533064	0.365165917639896	1	0	0.365165917639896	1	0	2367106	1	26	18	1	FALSE	HETLOSS	PASS
659_bTo_pair	MYSM1	1	58654739	58700092	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	23	5	TRUE	DIPLOID	PASS
659_bTo_pair	MYT1	20	64102394	64242253	FALSE	1225	-0.32421417626258	43	63733191	64273510	0.192136715055622	3	NA	0.192136715055622	3	NA	540319	NA	22	31	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	MYT1L	2	1789113	2331664	FALSE	89	-0.524158836377085	27	41620	3847167	1	2	1	1	2	1	3805547	1	18	25	1	FALSE	DIPLOID	PASS
659_bTo_pair	MYZAP	15	57591941	57685364	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	13	3	FALSE	HETLOSS	PASS
659_bTo_pair	MZB1	5	139387480	139390081	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	MZF1	19	58561931	58573575	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	11	1	FALSE	GAIN	PASS
659_bTo_pair	MZT1	13	72708357	72727687	FALSE	836	-0.444239733377228	32	50956423	72747004	0.365165917639896	2	0	0.365165917639896	2	0	21790581	2	40	3	1	FALSE	CNLOH	PASS
659_bTo_pair	MZT2A	2	131464900	131492743	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	MZT2B	2	130181737	130190729	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	N4BP1	16	48538726	48620148	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	N4BP2	4	40056826	40158252	FALSE	280	-0.191477557443324	47	38829296	41740154	0.365165917639896	3	1	0.365165917639896	3	1	2910858	2	22	30	3	FALSE	GAIN	PASS
659_bTo_pair	N4BP2L1	13	32400723	32428311	FALSE	830	-0.745621963362667	19	32401848	39788354	0.365165917639896	1	0	0.365165917639896	1	0	7386506	1	30	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	N4BP2L2	13	32432417	32538885	FALSE	830	-0.745621963362667	19	32401848	39788354	0.365165917639896	1	0	0.365165917639896	1	0	7386506	1	30	19	1	FALSE	HETLOSS	PASS
659_bTo_pair	N4BP3	5	178113443	178126087	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	N6AMT1	21	28872191	28885371	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	NAA10	23	153929242	153935223	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	9	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	NAA11	4	79225694	79326050	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	NAA15	4	139301455	139420033	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	NAA16	13	41311205	41377030	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	NAA20	20	20017116	20033655	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	NAA25	12	112026689	112109022	FALSE	802	-0.463173510714366	34	111455064	112408626	NA	2	NA	NA	2	NA	953562	NA	12	24	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NAA30	14	57390544	57415917	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	NAA35	9	85941146	86022298	FALSE	604	-0.547885090101936	27	85547201	90613824	1	2	1	1	2	1	5066623	1	21	22	1	FALSE	DIPLOID	PASS
659_bTo_pair	NAA38	17	7856685	7885238	FALSE	1002	-0.806633716627379	14	7689340	8047671	0.365165917639896	1	0	0.365165917639896	1	0	358331	1	15	9	2	FALSE	HETLOSS	PASS
659_bTo_pair	NAA40	11	63938959	63957328	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	NAA50	3	113716460	113746300	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	5	0	FALSE	GAIN	PASS
659_bTo_pair	NAA60	16	3443611	3486963	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	NAA80	3	50296402	50299421	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	NAAA	4	75913657	75941051	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	NAALAD2	11	90131515	90192894	FALSE	714	-0.230278951577934	46	86306357	90211282	0.298322295679939	3	NA	0.298322295679939	3	NA	3904925	NA	21	20	4	FALSE	GAIN (many states)	PASS
659_bTo_pair	NAALADL1	11	65044818	65058549	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	16	1	FALSE	GAIN	PASS
659_bTo_pair	NAALADL2	3	174438573	175810552	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	18	1	FALSE	GAIN	PASS
659_bTo_pair	NAB1	2	190646746	190692766	FALSE	161	-0.46057869782823	30	190057617	197310624	1	2	1	1	2	1	7253007	1	23	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	NAB2	12	57088894	57095476	FALSE	779	2.01501303392276	104	57089281	57128995	0.364342740527346	27	NA	0.364342740527346	27	NA	39714	NA	3	17	2	FALSE	AMP	PASS
659_bTo_pair	NABP1	2	191678068	191696659	FALSE	161	-0.46057869782823	30	190057617	197310624	1	2	1	1	2	1	7253007	1	23	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	NABP2	12	56222015	56229854	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NACA	12	56712428	56731628	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	17	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NACA2	17	61590426	61591202	FALSE	1062	-0.555528439510251	26	60671378	61590660	NA	2	NA	NA	2	NA	919282	NA	4	3	2	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	NACAD	7	45080438	45088914	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	22	6	FALSE	GAIN	PASS
659_bTo_pair	NACC1	19	13118103	13141141	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	10	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	NACC2	9	136006537	136095285	FALSE	629	-0.955558414525678	9	134750808	136485014	0.291955377254426	0	0	0.291955377254426	0	0	1734206	0	30	7	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	NADK	1	1751232	1780457	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	16	3	FALSE	DIPLOID	PASS
659_bTo_pair	NADK2	5	36192592	36242279	FALSE	314	-0.173277106490387	51	35904615	38924434	0.365165917639896	3	NA	0.365165917639896	3	NA	3019819	NA	16	14	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	NADSYN1	11	71453109	71524107	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	21	2	FALSE	GAIN	PASS
659_bTo_pair	NAE1	16	66802875	66873256	FALSE	973	-0.642771892390385	26	64948130	66912568	NA	2	NA	NA	2	NA	1964438	NA	17	29	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NAF1	4	163110073	163166921	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	NAGA	22	42058354	42070842	FALSE	1269	-0.443951758803067	34	41205309	42514754	NA	2	NA	NA	2	NA	1309445	NA	31	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NAGK	2	71064344	71079805	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	NAGLU	17	42536172	42544449	FALSE	1038	-0.623371137159426	26	42404937	42698887	NA	2	NA	NA	2	NA	293950	NA	13	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NAGPA	16	5024844	5034141	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	NAGS	17	44004546	44009063	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	10	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NAIF1	9	128061233	128068206	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	NAIP	5	70968483	71025114	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	NALCN	13	101053776	101416492	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	44	2	FALSE	CNLOH	PASS
659_bTo_pair	NAMPT	7	106248285	106286326	FALSE	487	1.90667166698194	101	106248413	107045195	0.364342740527346	25	NA	0.364342740527346	25	NA	796782	NA	4	35	1	FALSE	AMP	PASS
659_bTo_pair	NANOG	12	7787794	7799141	FALSE	745	-0.243574834353832	44	6965649	8175835	0.345317016959666	3	1	0.345317016959666	3	1	1210186	2	26	5	0	FALSE	GAIN	PASS
659_bTo_pair	NANOGNB	12	7765216	7774121	FALSE	745	-0.243574834353832	44	6965649	8175835	0.345317016959666	3	1	0.345317016959666	3	1	1210186	2	26	3	0	FALSE	GAIN	PASS
659_bTo_pair	NANOGP8	15	35084193	35085110	FALSE	890	-0.864832779596883	13	34359248	37966686	0.365165917639896	1	0	0.365165917639896	1	0	3607438	1	12	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	NANOS1	10	119029716	119033732	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	4	0	FALSE	CNLOH	PASS
659_bTo_pair	NANOS2	19	45913214	45914870	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	2	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	NANOS3	19	13862063	13880757	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	NANP	20	25612935	25624175	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	NANS	9	98056739	98083075	FALSE	608	-0.541405085979946	27	95522076	99069752	1	2	1	1	2	1	3547676	1	31	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	NAP1L1	12	76036587	76085033	FALSE	792	-0.349776929755415	43	71610399	76348235	0.192136715055622	3	NA	0.192136715055622	3	NA	4737836	NA	18	15	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	NAP1L2	23	73212299	73214848	FALSE	1317	0.217996879888221	62	71533297	76176924	0.364342740527346	5	NA	0.364342740527346	5	NA	4643627	NA	35	6	0	FALSE	AMP (many states)	PASS
659_bTo_pair	NAP1L3	23	93670930	93673568	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	7	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	NAP1L4	11	2944431	2992377	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	NAP1L5	4	88695915	88697829	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	NAPA	19	47487637	47515240	FALSE	1187	-0.64296711085636	26	47021158	48297657	NA	2	NA	NA	2	NA	1276499	NA	31	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NAPB	20	23374519	23421519	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	NAPEPLD	7	103099776	103149560	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	NAPG	18	10525905	10552761	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	11	1	FALSE	GAIN	PASS
659_bTo_pair	NAPRT	8	143574785	143578649	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	11	2	FALSE	DIPLOID	PASS
659_bTo_pair	NAPSA	19	50358477	50365830	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	10	2	FALSE	HETLOSS	PASS
659_bTo_pair	NARF	17	82458180	82490537	FALSE	1085	-0.607666454607286	26	82405295	83094473	NA	2	NA	NA	2	NA	689178	NA	13	11	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NARS	18	57600656	57622213	FALSE	1105	-0.785555027616249	16	52752095	58670682	0.365165917639896	1	0	0.365165917639896	1	0	5918587	1	19	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	NARS2	11	78435961	78574874	FALSE	712	-0.188800010767045	48	77590086	86068715	0.365165917639896	3	NA	0.365165917639896	3	NA	8478629	NA	30	14	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	NASP	1	45583846	45618904	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	18	2	FALSE	DIPLOID	PASS
659_bTo_pair	NAT1	8	18170477	18223689	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	NAT10	11	34105602	34147670	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	29	0	FALSE	DIPLOID	PASS
659_bTo_pair	NAT14	19	55485004	55487568	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	NAT16	7	101170493	101180276	FALSE	484	-0.570670723449775	26	101042591	102111653	NA	2	NA	NA	2	NA	1069062	NA	15	7	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NAT2	8	18391245	18401218	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	4	2	FALSE	HETLOSS	PASS
659_bTo_pair	NAT8	2	73640832	73642393	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	NAT8L	4	2059512	2069089	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	5	0	FALSE	GAIN	PASS
659_bTo_pair	NAT9	17	74770547	74776367	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	NATD1	17	21238870	21253410	FALSE	1017	-0.613455041037862	26	21198868	21303244	NA	2	NA	NA	2	NA	104376	NA	3	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NAV1	1	201622885	201826969	FALSE	61	-0.50531963543648	34	201209721	201898337	NA	2	NA	NA	2	NA	688616	NA	11	38	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NAV2	11	19350724	20121598	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	55	4	FALSE	DIPLOID	PASS
659_bTo_pair	NAV3	12	77324641	78213008	FALSE	793	-0.510041181295141	29	76355979	85286979	NA	2	NA	NA	2	NA	8931000	NA	22	52	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NAXD	13	110615460	110639993	FALSE	844	-0.576217954819194	24	110150427	113263496	0.359751661895656	2	0	0.359751661895656	2	0	3113069	2	19	11	0	FALSE	CNLOH	PASS
659_bTo_pair	NAXE	1	156591762	156594299	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	NBAS	2	15166909	15561330	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	57	7	FALSE	DIPLOID	PASS
659_bTo_pair	NBDY	23	56729241	56818380	FALSE	1303	0.0232492223836125	56	53426353	57488811	0.365165917639896	4	NA	0.365165917639896	4	NA	4062458	NA	32	1	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	NBEA	13	34942287	35673022	FALSE	830	-0.745621963362667	19	32401848	39788354	0.365165917639896	1	0	0.365165917639896	1	0	7386506	1	30	68	1	FALSE	HETLOSS	PASS
659_bTo_pair	NBEAL1	2	203014879	203226378	FALSE	166	-0.425780118113581	30	201288659	203854096	1	2	1	1	2	1	2565437	1	22	60	0	FALSE	DIPLOID	PASS
659_bTo_pair	NBEAL2	3	46979683	47009703	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	57	1	FALSE	HETLOSS	PASS
659_bTo_pair	NBL1	1	19596979	19658456	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	NBN	8	89933336	90003228	TRUE	556	1.97015605679843	102	89924463	90001980	0.364342740527346	26	NA	0.364342740527346	26	NA	77517	NA	3	37	12	FALSE	AMP	PASS
659_bTo_pair	NBPF1	1	16562319	16613562	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	15	11	FALSE	DIPLOID	PASS
659_bTo_pair	NBPF10	1	146064699	146144804	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	7	2	FALSE	DIPLOID	PASS
659_bTo_pair	NBPF11	1	148102046	148152322	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	NBPF12	1	146938744	146996202	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	NBPF14	1	148531385	148679751	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	NBPF15	1	144421386	144461674	FALSE	44	-0.0508975396039555	55	119911615	146019534	0.328696605851359	4	NA	0.328696605851359	4	NA	26107919	NA	33	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	NBPF19	1	149390623	149556361	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	NBPF20	1	145289900	145405778	FALSE	44	-0.0508975396039555	55	119911615	146019534	0.328696605851359	4	NA	0.328696605851359	4	NA	26107919	NA	33	1	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	NBPF26	1	120723923	120841481	FALSE	44	-0.0508975396039555	55	119911615	146019534	0.328696605851359	4	NA	0.328696605851359	4	NA	26107919	NA	33	12	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	NBPF3	1	21440128	21485005	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	9	2	FALSE	DIPLOID	PASS
659_bTo_pair	NBPF4	1	108223341	108244081	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	6	2	FALSE	HETLOSS	PASS
659_bTo_pair	NBPF6	1	108450282	108471002	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	NBPF9	1	149054027	149103561	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	NBR1	17	43170481	43211689	FALSE	1042	-0.917571943211592	13	43146172	43526465	0.365165917639896	1	0	0.365165917639896	1	0	380293	1	6	25	0	FALSE	HETLOSS	PASS
659_bTo_pair	NCALD	8	101686543	102124907	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	4	0	FALSE	GAIN	PASS
659_bTo_pair	NCAM1	11	112961247	113278436	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	26	1	FALSE	HETLOSS	PASS
659_bTo_pair	NCAM2	21	20998315	21543329	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	23	2	FALSE	DIPLOID	PASS
659_bTo_pair	NCAN	19	19211973	19252233	FALSE	1161	-0.292613860626304	46	19182590	19465611	0.298322295679939	3	NA	0.298322295679939	3	NA	283021	NA	10	22	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	NCAPD2	12	6493356	6531955	FALSE	741	-0.251609480735115	44	4489790	6567957	0.345317016959666	3	1	0.345317016959666	3	1	2078167	2	28	31	1	FALSE	GAIN	PASS
659_bTo_pair	NCAPD3	11	134150119	134225454	FALSE	734	-0.516486951202814	27	128842412	134387591	1	2	1	1	2	1	5545179	1	27	36	1	FALSE	DIPLOID	PASS
659_bTo_pair	NCAPG	4	17810902	17844862	FALSE	277	0.271123815908725	63	17633730	20704492	0.364342740527346	6	NA	0.364342740527346	6	NA	3070762	NA	7	23	3	FALSE	AMP (many states)	PASS
659_bTo_pair	NCAPG2	7	158631311	158704829	FALSE	509	-0.56054035608462	23	152759958	159144708	0.186356639256811	1	0	0.186356639256811	1	0	6384750	1	20	28	3	FALSE	HETLOSS	PASS
659_bTo_pair	NCAPH	2	96335787	96373845	FALSE	128	-0.534748403488722	29	96267335	97158701	NA	2	NA	NA	2	NA	891366	NA	17	19	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NCAPH2	22	50508216	50523472	FALSE	1272	-0.260847831900416	46	50286270	50731222	0.298322295679939	3	NA	0.298322295679939	3	NA	444952	NA	19	17	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	NCBP1	9	97633626	97673748	FALSE	608	-0.541405085979946	27	95522076	99069752	1	2	1	1	2	1	3547676	1	31	23	0	FALSE	DIPLOID	PASS
659_bTo_pair	NCBP2	3	196935402	196942597	FALSE	271	-0.194588974812627	47	196198492	198169864	0.365165917639896	3	1	0.365165917639896	3	1	1971372	2	29	5	0	FALSE	GAIN	PASS
659_bTo_pair	NCBP2-AS2	3	196942623	196943540	FALSE	271	-0.194588974812627	47	196198492	198169864	0.365165917639896	3	1	0.365165917639896	3	1	1971372	2	29	2	0	FALSE	GAIN	PASS
659_bTo_pair	NCBP2L	23	107774899	107795829	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	NCBP3	17	3802165	3846251	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	14	1	FALSE	HETLOSS	PASS
659_bTo_pair	NCCRP1	19	39196961	39201884	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	NCDN	1	35557473	35567274	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	NCEH1	3	172630249	172711218	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	9	1	FALSE	GAIN	PASS
659_bTo_pair	NCF1	7	74773962	74789315	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	NCF2	1	183555563	183590876	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	NCF4	22	36860988	36878015	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	11	3	FALSE	CNLOH	PASS
659_bTo_pair	NCK1	3	136862208	136949823	FALSE	244	-0.465451876797886	34	136855703	138629155	NA	2	NA	NA	2	NA	1773452	NA	14	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NCK2	2	105744897	105894274	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	NCKAP1	2	182909115	183038858	FALSE	157	-0.495064743595466	30	181539293	185786350	1	2	1	1	2	1	4247057	1	12	32	1	FALSE	DIPLOID	PASS
659_bTo_pair	NCKAP1L	12	54497711	54548238	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	31	0	FALSE	DIPLOID	PASS
659_bTo_pair	NCKAP5	2	132671799	133568463	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	33	2	FALSE	DIPLOID	PASS
659_bTo_pair	NCKAP5L	12	49791146	49828750	FALSE	770	-0.500134310902258	34	49065087	50081631	NA	2	NA	NA	2	NA	1016544	NA	25	22	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NCKIPSD	3	48673844	48686364	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	NCL	2	231453531	231483641	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	NCLN	19	3185563	3209575	FALSE	1122	-0.653400653967241	21	3157829	4037863	0.140309795179477	0	0	0.140309795179477	0	0	880034	0	27	16	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	NCMAP	1	24556111	24609328	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	NCOA1	2	24491914	24770702	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	27	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NCOA2	8	70109762	70403805	FALSE	553	-0.248188717260806	46	68331252	73878866	0.298322295679939	3	NA	0.298322295679939	3	NA	5547614	NA	20	27	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	NCOA3	20	47501902	47656877	FALSE	1215	1.55100709289964	91	47501904	47656846	0.364342740527346	19	NA	0.364342740527346	19	NA	154942	NA	2	44	2	FALSE	AMP	PASS
659_bTo_pair	NCOA4	10	46005088	46030714	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	14	1	FALSE	CNLOH	PASS
659_bTo_pair	NCOA5	20	46060985	46089952	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	NCOA6	20	34689097	34825649	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	37	0	FALSE	DIPLOID	PASS
659_bTo_pair	NCOA7	6	125781161	125932030	FALSE	421	-0.534093125771784	29	117482879	126348569	NA	2	NA	NA	2	NA	8865690	NA	29	20	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NCOR1	17	16029157	16218185	TRUE	1010	2.4990654067453	114	16029211	16032354	0.364342740527346	39	NA	0.364342740527346	39	NA	3143	NA	2	82	6	TRUE	AMP	PASS
659_bTo_pair	NCOR2	12	124324415	124567589	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	58	7	FALSE	DIPLOID	PASS
659_bTo_pair	NCR1	19	54906150	54916140	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	7	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	NCR2	6	41335655	41350887	FALSE	397	-0.509151429367598	27	37213022	41687167	1	2	1	1	2	1	4474145	1	33	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	NCR3	6	31588895	31592985	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	NCR3LG1	11	17351726	17377341	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	NCS1	9	130172578	130237304	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	NCSTN	1	160343272	160358952	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	18	1	FALSE	DIPLOID	PASS
659_bTo_pair	NDC1	1	53765460	53838860	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	NDC80	18	2571511	2616635	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	16	1	FALSE	GAIN	PASS
659_bTo_pair	NDE1	16	15643267	15726353	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	NDEL1	17	8413131	8490411	FALSE	1006	-0.894220729735546	12	8370429	10825247	0.365165917639896	1	0	0.365165917639896	1	0	2454818	1	31	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	NDFIP1	5	142108505	142154443	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NDFIP2	13	79481124	79556075	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	8	0	FALSE	CNLOH	PASS
659_bTo_pair	NDN	15	23685400	23687330	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	NDNF	4	121035613	121073021	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	NDOR1	9	137205685	137217009	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	NDP	23	43948776	43973504	FALSE	1290	-0.118437036786996	53	41447899	44844689	0.273255132087987	4	NA	0.273255132087987	4	NA	3396790	NA	11	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	NDRG1	8	133237171	133302022	FALSE	565	-0.282741903777565	44	129748604	134610527	0.345317016959666	3	1	0.345317016959666	3	1	4861923	2	18	16	0	FALSE	GAIN	PASS
659_bTo_pair	NDRG2	14	21016763	21070872	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	26	1	FALSE	DIPLOID	PASS
659_bTo_pair	NDRG3	20	36651766	36746078	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	NDRG4	16	58462846	58513628	FALSE	972	-0.499158643645776	34	57931773	64947842	NA	2	NA	NA	2	NA	7016069	NA	18	17	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NDST1	5	150485818	150558211	FALSE	350	-0.819899512516675	16	150444373	153997804	0.365165917639896	1	0	0.365165917639896	1	0	3553431	1	25	19	2	FALSE	HETLOSS	PASS
659_bTo_pair	NDST2	10	73801911	73811798	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	18	0	FALSE	CNLOH	PASS
659_bTo_pair	NDST3	4	118033618	118258648	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	NDST4	4	114827763	115113876	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	NDUFA1	23	119871487	119876662	FALSE	1328	0.070674287613007	59	119603543	121049335	0.308533751035793	5	NA	0.308533751035793	5	NA	1445792	NA	34	3	0	FALSE	AMP (many states)	PASS
659_bTo_pair	NDUFA10	2	239892450	240025402	FALSE	193	-1.42520709434888	3	239961110	240022232	0.365165917639896	0	0	0.365165917639896	0	0	61122	0	1	11	1	TRUE	HOMDEL	PASS
659_bTo_pair	NDUFA11	19	5891276	5904006	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	NDUFA12	12	94897055	95003770	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	NDUFA13	19	19515736	19529054	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	6	0	FALSE	AMP (many states)	PASS
659_bTo_pair	NDUFA2	5	140638740	140647785	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	15	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	NDUFA3	19	54102728	54109257	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	NDUFA4	7	10931951	10940256	FALSE	456	-0.240618790532325	45	6028682	12688782	0.279823559258657	3	0	0.279823559258657	3	0	6660100	3	32	4	2	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	NDUFA4L2	12	57234903	57240715	FALSE	780	-0.355982590799428	43	57138514	57456829	0.192136715055622	3	NA	0.192136715055622	3	NA	318315	NA	9	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	NDUFA5	7	123536997	123558255	FALSE	490	-0.576498321273708	26	116888215	124790543	NA	2	NA	NA	2	NA	7902328	NA	33	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NDUFA6	22	42085525	42090955	FALSE	1269	-0.443951758803067	34	41205309	42514754	NA	2	NA	NA	2	NA	1309445	NA	31	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NDUFA7	19	8308768	8321396	FALSE	1132	-0.583194501817822	26	7916513	8843246	NA	2	NA	NA	2	NA	926733	NA	25	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NDUFA8	9	122144058	122159819	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	NDUFA9	12	4649095	4694317	FALSE	741	-0.251609480735115	44	4489790	6567957	0.345317016959666	3	1	0.345317016959666	3	1	2078167	2	28	11	0	FALSE	GAIN	PASS
659_bTo_pair	NDUFAB1	16	23581002	23596356	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	NDUFAF1	15	41387349	41402519	FALSE	894	-0.874433234740196	13	41183964	41662415	0.365165917639896	1	0	0.365165917639896	1	0	478451	1	12	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	NDUFAF2	5	60945129	61153037	FALSE	323	-0.645106866010582	25	58495036	67196614	0.365165917639896	1	0	0.365165917639896	1	0	8701578	1	31	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	NDUFAF3	3	49020459	49023495	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	NDUFAF4	6	96889313	96897881	FALSE	411	-0.455063723695114	34	95586870	106069771	NA	2	NA	NA	2	NA	10482901	NA	27	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NDUFAF5	20	13784950	13821582	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	NDUFAF6	8	94895767	95116455	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	17	0	FALSE	GAIN	PASS
659_bTo_pair	NDUFAF7	2	37231631	37253403	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	NDUFAF8	17	81239239	81241281	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	NDUFB1	14	92116122	92121917	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	3	2	FALSE	DIPLOID	PASS
659_bTo_pair	NDUFB10	16	1959508	1961975	FALSE	938	-0.541386594301884	29	1947002	2038739	NA	2	NA	NA	2	NA	91737	NA	11	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NDUFB11	23	47142216	47145504	FALSE	1292	0.0982305969328026	59	45151653	47144467	0.308533751035793	5	NA	0.308533751035793	5	NA	1992814	NA	9	6	0	TRUE	AMP (many states)	PASS
659_bTo_pair	NDUFB2	7	140690777	140722790	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	17	0	TRUE	DIPLOID	PASS
659_bTo_pair	NDUFB3	2	201071433	201085750	FALSE	164	-0.381871160033202	39	198084145	201228955	NA	2	NA	NA	2	NA	3144810	NA	19	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NDUFB4	3	120596309	120602500	FALSE	236	-0.555107352649266	26	120168171	121419120	NA	2	NA	NA	2	NA	1250949	NA	8	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NDUFB5	3	179604690	179627647	FALSE	253	-0.302573270656947	43	179243074	180989661	0.192136715055622	3	NA	0.192136715055622	3	NA	1746587	NA	13	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	NDUFB6	9	32552999	32573184	FALSE	585	-0.464842894155678	32	22447079	32572950	0.365165917639896	2	0	0.365165917639896	2	0	10125871	2	19	4	0	FALSE	CNLOH	PASS
659_bTo_pair	NDUFB7	19	14566078	14572062	FALSE	1149	-0.413849407553013	38	14562540	15157819	0.164051638880412	2	0	0.164051638880412	2	0	595279	2	17	3	0	FALSE	CNLOH	PASS
659_bTo_pair	NDUFB8	10	100523740	100530000	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	6	1	FALSE	CNLOH	PASS
659_bTo_pair	NDUFB9	8	124539101	124580648	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	16	0	FALSE	GAIN	PASS
659_bTo_pair	NDUFC1	4	139266880	139302551	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	NDUFC2	11	78068304	78080219	FALSE	712	-0.188800010767045	48	77590086	86068715	0.365165917639896	3	NA	0.365165917639896	3	NA	8478629	NA	30	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	NDUFC2-KCTD14	11	78016971	78079865	FALSE	712	-0.188800010767045	48	77590086	86068715	0.365165917639896	3	NA	0.365165917639896	3	NA	8478629	NA	30	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	NDUFS1	2	206114817	206159603	FALSE	168	-0.499602545595775	30	203936898	208231285	1	2	1	1	2	1	4294387	1	25	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	NDUFS2	1	161197104	161214395	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	17	2	FALSE	DIPLOID	PASS
659_bTo_pair	NDUFS3	11	47565336	47584562	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	20	1	FALSE	DIPLOID	PASS
659_bTo_pair	NDUFS4	5	53560633	53683340	FALSE	319	-0.764156631411702	19	50399919	56556187	0.365165917639896	1	0	0.365165917639896	1	0	6156268	1	28	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	NDUFS5	1	39026318	39034636	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	NDUFS6	5	1801400	1816605	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	4	0	FALSE	GAIN	PASS
659_bTo_pair	NDUFS7	19	1383527	1395589	FALSE	1116	-0.668595541323287	22	1229189	1605424	0.291335969972972	1	0	0.291335969972972	1	0	376235	1	21	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	NDUFS8	11	68030617	68036644	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	5	0	FALSE	GAIN	PASS
659_bTo_pair	NDUFV1	11	67605653	67612554	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	12	0	FALSE	GAIN	PASS
659_bTo_pair	NDUFV2	18	9102630	9134345	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	8	0	FALSE	GAIN	PASS
659_bTo_pair	NDUFV3	21	42879644	42913304	FALSE	1234	-0.544212636077936	27	41740855	44141314	1	2	1	1	2	1	2400459	1	31	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	NEB	2	151485336	151734487	FALSE	149	-0.454179855872301	30	147845197	157628657	1	2	1	1	2	1	9783460	1	30	182	19	FALSE	DIPLOID	PASS
659_bTo_pair	NEBL	10	20779973	21174187	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	35	0	FALSE	CNLOH	PASS
659_bTo_pair	NECAB1	8	90791550	90959408	FALSE	557	-0.436164323203642	34	90006291	91395139	NA	2	NA	NA	2	NA	1388848	NA	9	14	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NECAB2	16	83968632	84002776	FALSE	987	-0.578642888038652	23	81999201	85806436	0.186356639256811	1	0	0.186356639256811	1	0	3807235	1	31	13	1	FALSE	HETLOSS	PASS
659_bTo_pair	NECAB3	20	33657087	33674463	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	NECAP1	12	8076939	8097859	FALSE	745	-0.243574834353832	44	6965649	8175835	0.345317016959666	3	1	0.345317016959666	3	1	1210186	2	26	8	0	FALSE	GAIN	PASS
659_bTo_pair	NECAP2	1	16440672	16460078	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	NECTIN1	11	119623408	119729084	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	NECTIN2	19	44846175	44889228	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	NECTIN3	3	111070071	111275563	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	17	2	FALSE	GAIN	PASS
659_bTo_pair	NECTIN4	1	161070995	161089599	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	NEDD1	12	96907223	96953777	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	NEDD4	15	55826922	55993746	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	36	8	FALSE	HETLOSS	PASS
659_bTo_pair	NEDD4L	18	58044367	58401540	FALSE	1105	-0.785555027616249	16	52752095	58670682	0.365165917639896	1	0	0.365165917639896	1	0	5918587	1	19	33	1	FALSE	HETLOSS	PASS
659_bTo_pair	NEDD8	14	24216852	24232454	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	NEDD8-MDP1	14	24213955	24232352	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	NEDD9	6	11183298	11382348	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	16	2	FALSE	DIPLOID	PASS
659_bTo_pair	NEFH	22	29480230	29491390	FALSE	1259	-0.52695279651924	29	29311622	29581007	NA	2	NA	NA	2	NA	269385	NA	7	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NEFL	8	24950955	24957110	FALSE	520	-0.862302460890099	13	23703081	26040940	0.365165917639896	1	0	0.365165917639896	1	0	2337859	1	12	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	NEFM	8	24913012	24919098	FALSE	520	-0.862302460890099	13	23703081	26040940	0.365165917639896	1	0	0.365165917639896	1	0	2337859	1	12	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	NEGR1	1	71395940	72282734	FALSE	24	1.00961458335643	80	71396039	72282539	0.364342740527346	12	NA	0.364342740527346	12	NA	886500	NA	1	41	1	FALSE	AMP	PASS
659_bTo_pair	NEIL1	15	75346955	75357114	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	NEIL2	8	11769639	11787346	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	NEIL3	4	177309836	177362943	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	11	2	FALSE	HETLOSS	PASS
659_bTo_pair	NEK1	4	169392857	169612629	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	35	0	FALSE	HETLOSS	PASS
659_bTo_pair	NEK10	3	27110085	27369460	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	39	1	FALSE	HETLOSS	PASS
659_bTo_pair	NEK11	3	131026850	131350465	FALSE	242	-0.32037413513609	40	130560427	134790274	0.308149309490068	3	1	0.308149309490068	3	1	4229847	2	29	18	1	FALSE	GAIN	PASS
659_bTo_pair	NEK2	1	211658657	211675630	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	NEK3	13	52132639	52159861	FALSE	836	-0.444239733377228	32	50956423	72747004	0.365165917639896	2	0	0.365165917639896	2	0	21790581	2	40	15	0	FALSE	CNLOH	PASS
659_bTo_pair	NEK4	3	52708449	52770949	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	16	4	FALSE	HETLOSS	PASS
659_bTo_pair	NEK5	13	52033611	52129078	FALSE	836	-0.444239733377228	32	50956423	72747004	0.365165917639896	2	0	0.365165917639896	2	0	21790581	2	40	19	0	FALSE	CNLOH	PASS
659_bTo_pair	NEK6	9	124257606	124353307	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	NEK7	1	198156963	198322420	FALSE	60	-0.443336911293225	30	196228264	201209660	1	2	1	1	2	1	4981396	1	29	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	NEK8	17	28725897	28743455	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	NEK9	14	75079353	75127344	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	23	0	FALSE	DIPLOID	PASS
659_bTo_pair	NELFA	4	1982714	2041903	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	13	1	FALSE	GAIN	PASS
659_bTo_pair	NELFB	9	137255173	137273546	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	NELFCD	20	58981208	58995133	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	NELFE	6	31952087	31959110	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	NELL1	11	20669551	21575681	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	NELL2	12	44508275	44921848	FALSE	764	-0.478463991093384	34	40959192	45805435	NA	2	NA	NA	2	NA	4846243	NA	16	23	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NEMF	14	49782083	49853203	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	36	0	FALSE	DIPLOID	PASS
659_bTo_pair	NEMP1	12	57055643	57088063	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NEMP2	2	190504342	190534722	FALSE	161	-0.46057869782823	30	190057617	197310624	1	2	1	1	2	1	7253007	1	23	9	3	FALSE	DIPLOID	PASS
659_bTo_pair	NENF	1	212432887	212446379	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	NEO1	15	73051710	73305206	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	31	0	FALSE	HETLOSS	PASS
659_bTo_pair	NEPRO	3	113002440	113019861	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	12	1	FALSE	GAIN	PASS
659_bTo_pair	NES	1	156668763	156677397	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	21	1	FALSE	DIPLOID	PASS
659_bTo_pair	NET1	10	5412551	5458463	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	14	0	FALSE	CNLOH	PASS
659_bTo_pair	NETO1	18	72742314	72868146	FALSE	1111	-0.872352968035647	12	63331800	74584528	0.365165917639896	1	0	0.365165917639896	1	0	11252728	1	31	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	NETO2	16	47077703	47143997	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	NEU1	6	31857659	31862906	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	NEU2	2	233032672	233035057	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	NEU3	11	74988134	75018893	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	7	0	FALSE	GAIN	PASS
659_bTo_pair	NEU4	2	241808825	241817413	FALSE	194	-0.588828356865968	23	240025214	241817025	0.186356639256811	1	0	0.186356639256811	1	0	1791811	1	34	9	2	FALSE	HETLOSS	PASS
659_bTo_pair	NEURL1	10	103493979	103592552	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	9	1	FALSE	CNLOH	PASS
659_bTo_pair	NEURL1B	5	172641266	172691540	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	NEURL2	20	45888625	45891287	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	NEURL3	2	96497643	96508109	FALSE	128	-0.534748403488722	29	96267335	97158701	NA	2	NA	NA	2	NA	891366	NA	17	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NEURL4	17	7315628	7329393	FALSE	999	0.337193926194085	65	7307123	7323993	0.364342740527346	6	NA	0.364342740527346	6	NA	16870	NA	4	34	2	TRUE	AMP (many states)	PASS
659_bTo_pair	NEUROD1	2	181673088	181680876	FALSE	157	-0.495064743595466	30	181539293	185786350	1	2	1	1	2	1	4247057	1	12	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	NEUROD2	17	39603536	39609777	FALSE	1026	-0.886931394907893	13	39564387	39685917	0.365165917639896	1	0	0.365165917639896	1	0	121530	1	7	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	NEUROD4	12	55019945	55030014	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	NEUROD6	7	31337461	31340894	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	4	1	FALSE	GAIN	PASS
659_bTo_pair	NEUROG1	5	135534282	135535949	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	NEUROG2	4	112513516	112516172	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	NEUROG3	10	69571698	69573238	FALSE	651	-0.523280686314431	28	68722553	70760843	0.351300687168522	2	0	0.351300687168522	2	0	2038290	2	27	3	0	FALSE	CNLOH	PASS
659_bTo_pair	NEXMIF	23	74732856	74925485	FALSE	1317	0.217996879888221	62	71533297	76176924	0.364342740527346	5	NA	0.364342740527346	5	NA	4643627	NA	35	19	0	FALSE	AMP (many states)	PASS
659_bTo_pair	NEXN	1	77888513	77943895	FALSE	25	-0.394411030612058	39	74026891	77942032	NA	2	NA	NA	2	NA	3915141	NA	22	16	1	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	NF1	17	31094927	31382116	TRUE	1019	1.11370148874887	81	31090043	31387166	0.364342740527346	13	NA	0.364342740527346	13	NA	297123	NA	5	139	10	FALSE	AMP	PASS
659_bTo_pair	NF2	22	29603556	29698598	TRUE	1260	1.56299074670643	91	29603611	29703690	0.364342740527346	19	NA	0.364342740527346	19	NA	100079	NA	1	40	0	FALSE	AMP	PASS
659_bTo_pair	NFAM1	22	42380410	42432395	FALSE	1269	-0.443951758803067	34	41205309	42514754	NA	2	NA	NA	2	NA	1309445	NA	31	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NFASC	1	204828651	205022822	FALSE	66	-0.597189828646048	26	204618263	205619845	NA	2	NA	NA	2	NA	1001582	NA	13	33	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NFAT5	16	69565094	69704666	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	25	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NFATC1	18	79395856	79529325	FALSE	1113	-0.883471952658051	12	75410842	80247341	0.365165917639896	1	0	0.365165917639896	1	0	4836499	1	17	16	2	FALSE	HETLOSS	PASS
659_bTo_pair	NFATC2	20	51386957	51562831	FALSE	1218	-0.459978768286429	34	50587211	53185754	NA	2	NA	NA	2	NA	2598543	NA	12	18	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NFATC2IP	16	28950807	28967097	FALSE	964	-0.363781394946907	39	28951039	28986896	NA	2	NA	NA	2	NA	35857	NA	3	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NFATC3	16	68084751	68229259	FALSE	979	-0.429457644119204	34	67645299	68698317	NA	2	NA	NA	2	NA	1053018	NA	33	20	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NFATC4	14	24365673	24379604	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	17	2	FALSE	DIPLOID	PASS
659_bTo_pair	NFE2	12	54292111	54301121	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	NFE2L1	17	48048329	48061487	FALSE	1049	-0.703360644300681	22	47810585	48529853	0.291335969972972	1	0	0.291335969972972	1	0	719268	1	15	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	NFE2L2	2	177227595	177392697	FALSE	154	1.70320810178303	96	177218720	177392822	0.364342740527346	21	NA	0.364342740527346	21	NA	174102	NA	3	32	0	FALSE	AMP	PASS
659_bTo_pair	NFE2L3	7	26152240	26187125	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	11	0	FALSE	GAIN	PASS
659_bTo_pair	NFE4	7	102973437	102988856	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	NFIA	1	60865259	61462793	FALSE	21	-0.414935064922519	39	59321678	64830856	NA	2	NA	NA	2	NA	5509178	NA	22	15	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NFIB	9	14081843	14398983	FALSE	581	-0.746183084602222	19	10618009	19786745	0.365165917639896	1	0	0.365165917639896	1	0	9168736	1	24	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	NFIC	19	3314403	3469217	FALSE	1122	-0.653400653967241	21	3157829	4037863	0.140309795179477	0	0	0.140309795179477	0	0	880034	0	27	14	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	NFIL3	9	91409045	91423862	FALSE	606	-0.547644280946133	27	91214370	95094057	1	2	1	1	2	1	3879687	1	31	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	NFIX	19	12995608	13098796	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	15	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	NFKB1	4	102501329	102617302	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	23	0	FALSE	DIPLOID	PASS
659_bTo_pair	NFKB2	10	102394110	102402529	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	22	0	FALSE	CNLOH	PASS
659_bTo_pair	NFKBIA	14	35401511	35404749	TRUE	853	2.36660806787545	111	35398117	35534470	0.364342740527346	35	NA	0.364342740527346	35	NA	136353	NA	2	10	2	FALSE	AMP	PASS
659_bTo_pair	NFKBIB	19	38899700	38908893	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	NFKBID	19	35887653	35902303	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	NFKBIE	6	44258166	44265788	FALSE	404	1.2877892239248	86	44254772	44265729	0.364342740527346	15	NA	0.364342740527346	15	NA	10957	NA	2	15	0	FALSE	AMP	PASS
659_bTo_pair	NFKBIL1	6	31546870	31558829	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	NFKBIZ	3	101827991	101861022	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	15	2	FALSE	GAIN	PASS
659_bTo_pair	NFRKB	11	129863636	129895590	FALSE	734	-0.516486951202814	27	128842412	134387591	1	2	1	1	2	1	5545179	1	27	29	2	FALSE	DIPLOID	PASS
659_bTo_pair	NFS1	20	35668055	35699359	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	NFU1	2	69395750	69437628	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	NFX1	9	33290511	33371157	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	28	0	FALSE	CNLOH	PASS
659_bTo_pair	NFXL1	4	47847233	47914667	FALSE	282	-0.204234033978701	47	41752697	49032685	0.365165917639896	3	1	0.365165917639896	3	1	7279988	2	31	22	4	FALSE	GAIN	PASS
659_bTo_pair	NFYA	6	41072945	41099976	FALSE	397	-0.509151429367598	27	37213022	41687167	1	2	1	1	2	1	4474145	1	33	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	NFYB	12	104117077	104138289	FALSE	798	-0.492720037723834	34	102839233	105367537	NA	2	NA	NA	2	NA	2528304	NA	20	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NFYC	1	40691648	40771603	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	NGB	14	77265483	77271312	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	NGDN	14	23469688	23509862	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	NGEF	2	232878686	233013272	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	NGF	1	115285918	115338236	FALSE	37	-0.781726809773331	16	114718157	116404480	0.365165917639896	1	0	0.365165917639896	1	0	1686323	1	12	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	NGFR	17	49495293	49515017	FALSE	1051	-0.636429062465303	26	48785033	49576193	NA	2	NA	NA	2	NA	791160	NA	15	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NGLY1	3	25718944	25790039	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	NGRN	15	90265659	90278141	FALSE	927	-0.86531749998723	13	90191956	90642068	0.365165917639896	1	0	0.365165917639896	1	0	450112	1	11	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	NHEJ1	2	219075317	219160865	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	NHLH1	1	160367067	160372848	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	NHLH2	1	115836377	115843917	FALSE	37	-0.781726809773331	16	114718157	116404480	0.365165917639896	1	0	0.365165917639896	1	0	1686323	1	12	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	NHLRC1	6	18120440	18122687	FALSE	370	-0.377368469329801	39	15246548	20212233	NA	2	NA	NA	2	NA	4965685	NA	18	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NHLRC2	10	113854661	113917194	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	15	0	FALSE	CNLOH	PASS
659_bTo_pair	NHLRC3	13	39038306	39050109	FALSE	830	-0.745621963362667	19	32401848	39788354	0.365165917639896	1	0	0.365165917639896	1	0	7386506	1	30	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	NHLRC4	16	566996	569495	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	2	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	NHP2	5	178149460	178153967	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	NHS	23	17375420	17735994	FALSE	1276	0.0763243231691416	59	15827382	20064777	0.308533751035793	5	NA	0.308533751035793	5	NA	4237395	NA	24	25	1	FALSE	AMP (many states)	PASS
659_bTo_pair	NHSL1	6	138422043	138692571	FALSE	429	-0.412609995390511	39	138092232	142443520	NA	2	NA	NA	2	NA	4351288	NA	18	23	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NHSL2	23	71910818	72161750	FALSE	1317	0.217996879888221	62	71533297	76176924	0.364342740527346	5	NA	0.364342740527346	5	NA	4643627	NA	35	27	0	FALSE	AMP (many states)	PASS
659_bTo_pair	NICN1	3	49422946	49429326	FALSE	218	-0.900819276070563	13	49413105	49683092	0.365165917639896	1	0	0.365165917639896	1	0	269987	1	7	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	NID1	1	235975830	236065162	FALSE	82	-0.550278310688863	27	235196044	241494870	1	2	1	1	2	1	6298826	1	22	28	3	FALSE	DIPLOID	PASS
659_bTo_pair	NID2	14	52004803	52069228	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	26	1	FALSE	DIPLOID	PASS
659_bTo_pair	NIF3L1	2	200889327	200903930	FALSE	164	-0.381871160033202	39	198084145	201228955	NA	2	NA	NA	2	NA	3144810	NA	19	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NIFK	2	121726945	121736923	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	NIM1K	5	43192071	43280850	FALSE	316	-0.143574193475256	49	39021030	43704252	0.365165917639896	3	1	0.365165917639896	3	1	4683222	2	28	8	0	FALSE	GAIN	PASS
659_bTo_pair	NIN	14	50719763	50831121	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	39	1	FALSE	DIPLOID	PASS
659_bTo_pair	NINJ1	9	93121489	93134288	FALSE	606	-0.547644280946133	27	91214370	95094057	1	2	1	1	2	1	3879687	1	31	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	NINJ2	12	564296	663779	FALSE	737	-0.295216300061446	43	409362	894533	0.192136715055622	3	NA	0.192136715055622	3	NA	485171	NA	4	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	NINL	20	25452705	25585517	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	27	2	FALSE	DIPLOID	PASS
659_bTo_pair	NIP7	16	69337996	69343111	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NIPA1	15	22773063	22829791	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	NIPA2	15	22838641	22868384	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	NIPAL1	4	47914142	48040173	FALSE	282	-0.204234033978701	47	41752697	49032685	0.365165917639896	3	1	0.365165917639896	3	1	7279988	2	31	22	5	FALSE	GAIN	PASS
659_bTo_pair	NIPAL2	8	98189833	98294393	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	12	1	FALSE	GAIN	PASS
659_bTo_pair	NIPAL3	1	24415794	24472976	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	13	2	FALSE	DIPLOID	PASS
659_bTo_pair	NIPAL4	5	157460019	157474717	FALSE	353	-0.698571741790457	22	157138801	161546576	0.291335969972972	1	0	0.291335969972972	1	0	4407775	1	29	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	NIPBL	5	36876759	37066413	FALSE	314	-0.173277106490387	51	35904615	38924434	0.365165917639896	3	NA	0.365165917639896	3	NA	3019819	NA	16	55	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	NIPSNAP1	22	29554808	29581337	FALSE	1259	-0.52695279651924	29	29311622	29581007	NA	2	NA	NA	2	NA	269385	NA	7	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NIPSNAP2	7	55951793	56000181	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	NIPSNAP3A	9	104747688	104760122	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	NIPSNAP3B	9	104764157	104777457	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	NISCH	3	52455118	52493071	FALSE	224	-0.84777820586227	13	52412877	52540527	0.365165917639896	1	0	0.365165917639896	1	0	127650	1	7	31	1	FALSE	HETLOSS	PASS
659_bTo_pair	NIT1	1	161118086	161125445	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	NIT2	3	100334701	100361635	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	10	0	FALSE	GAIN	PASS
659_bTo_pair	NKAIN1	1	31179745	31239554	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	NKAIN2	6	123804141	124825657	FALSE	421	-0.534093125771784	29	117482879	126348569	NA	2	NA	NA	2	NA	8865690	NA	29	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NKAIN3	8	62248591	62999652	FALSE	550	-0.186881774239562	48	60208949	67746087	0.365165917639896	3	NA	0.365165917639896	3	NA	7537138	NA	33	7	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	NKAIN4	20	63240784	63272694	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	NKAP	23	119920672	119943772	FALSE	1328	0.070674287613007	59	119603543	121049335	0.308533751035793	5	NA	0.308533751035793	5	NA	1445792	NA	34	10	3	FALSE	AMP (many states)	PASS
659_bTo_pair	NKAPD1	11	112074086	112085150	FALSE	724	-0.507750808576719	29	111913677	112086663	NA	2	NA	NA	2	NA	172986	NA	9	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NKAPL	6	28259320	28260958	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	NKD1	16	50548330	50649249	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	NKD2	5	1008829	1038943	FALSE	308	-0.255094097331532	44	92297	1246091	0.345317016959666	3	1	0.345317016959666	3	1	1153794	2	18	12	0	FALSE	GAIN	PASS
659_bTo_pair	NKG7	19	51371606	51372715	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	NKIRAS1	3	23891660	23946591	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	NKIRAS2	17	42011382	42025644	FALSE	1036	-0.764029118419186	19	41624551	42193564	0.365165917639896	1	0	0.365165917639896	1	0	569013	1	25	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	NKPD1	19	45149750	45158737	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	NKRF	23	119588337	119606443	FALSE	1327	1.0307148866152	81	119453040	119592470	0.364342740527346	12	NA	0.364342740527346	12	NA	139430	NA	5	10	0	TRUE	AMP	PASS
659_bTo_pair	NKTR	3	42600614	42648741	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	27	0	FALSE	HETLOSS	PASS
659_bTo_pair	NKX1-1	4	1402932	1406331	FALSE	272	-0.300029378244858	40	85877	1745020	0.308149309490068	3	1	0.308149309490068	3	1	1659143	2	29	5	1	FALSE	GAIN	PASS
659_bTo_pair	NKX1-2	10	124445239	124450184	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	4	0	FALSE	CNLOH	PASS
659_bTo_pair	NKX2-1	14	36516392	36521149	FALSE	855	2.7237083631169	117	36516416	36581389	0.364342740527346	46	NA	0.364342740527346	46	NA	64973	NA	2	13	0	FALSE	AMP	PASS
659_bTo_pair	NKX2-2	20	21511010	21514026	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	NKX2-3	10	99532933	99536524	FALSE	666	-0.516928660882684	29	98163350	100063639	NA	2	NA	NA	2	NA	1900289	NA	16	5	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NKX2-4	20	21395367	21398028	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	NKX2-5	5	173232109	173235357	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	NKX2-6	8	23702451	23706598	FALSE	519	1.74823598515416	98	23673756	23702905	0.364342740527346	22	NA	0.364342740527346	22	NA	29149	NA	2	4	0	TRUE	AMP	PASS
659_bTo_pair	NKX2-8	14	36580579	36582607	FALSE	855	2.7237083631169	117	36516416	36581389	0.364342740527346	46	NA	0.364342740527346	46	NA	64973	NA	2	4	0	TRUE	AMP	PASS
659_bTo_pair	NKX3-1	8	23678693	23682927	TRUE	519	1.74823598515416	98	23673756	23702905	0.364342740527346	22	NA	0.364342740527346	22	NA	29149	NA	2	14	2	FALSE	AMP	PASS
659_bTo_pair	NKX3-2	4	13540830	13545050	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	5	0	FALSE	GAIN	PASS
659_bTo_pair	NKX6-1	4	84491987	84498450	FALSE	291	-0.458701040497953	34	83536708	87613131	NA	2	NA	NA	2	NA	4076423	NA	17	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NKX6-2	10	132783179	132786052	FALSE	676	-0.612597388333807	25	132187132	133626712	0.365165917639896	1	0	0.365165917639896	1	0	1439580	1	27	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	NKX6-3	8	41645178	41650669	FALSE	536	-0.812766686991614	14	38512585	41896345	0.365165917639896	1	0	0.365165917639896	1	0	3383760	1	19	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	NLE1	17	35128753	35142315	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	16	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	NLGN1	3	173396284	174286644	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	12	0	FALSE	GAIN	PASS
659_bTo_pair	NLGN2	17	7404874	7419860	FALSE	1000	-0.750226164220686	19	7324407	7655594	0.365165917639896	1	0	0.365165917639896	1	0	331187	1	31	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	NLGN3	23	71144831	71171201	FALSE	1314	1.60568530066658	93	71113596	71254970	0.364342740527346	19	NA	0.364342740527346	19	NA	141374	NA	4	15	0	FALSE	AMP	PASS
659_bTo_pair	NLGN4X	23	5840637	6228863	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	12	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	NLK	17	28041737	28196381	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	NLN	5	65722196	65871725	FALSE	323	-0.645106866010582	25	58495036	67196614	0.365165917639896	1	0	0.365165917639896	1	0	8701578	1	31	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	NLRC3	16	3539033	3577400	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	24	1	TRUE	HETLOSS	PASS
659_bTo_pair	NLRC4	2	32224453	32265854	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	NLRC5	16	56989485	57083531	FALSE	970	-0.446547319806241	34	56865490	57067828	NA	2	NA	NA	2	NA	202338	NA	4	54	2	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	NLRP1	17	5499427	5619424	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	28	1	FALSE	HETLOSS	PASS
659_bTo_pair	NLRP10	11	7959424	7965426	FALSE	683	-0.403180715137318	35	6615199	8138345	1	2	1	1	2	1	1523146	1	28	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	NLRP11	19	55785397	55836800	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	17	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	NLRP12	19	53793603	53824394	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	17	1	FALSE	DIPLOID	PASS
659_bTo_pair	NLRP13	19	55891699	55932336	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	19	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	NLRP14	11	7020446	7071308	FALSE	683	-0.403180715137318	35	6615199	8138345	1	2	1	1	2	1	1523146	1	28	18	1	FALSE	DIPLOID	PASS
659_bTo_pair	NLRP2	19	54953130	55001142	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	20	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	NLRP2B	23	57677067	57680260	FALSE	1304	1.77517103734255	98	57592270	57909565	0.364342740527346	22	NA	0.364342740527346	22	NA	317295	NA	3	1	0	FALSE	AMP	PASS
659_bTo_pair	NLRP3	1	247416156	247449108	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	NLRP4	19	55836578	55881854	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	16	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	NLRP5	19	55999726	56061813	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	21	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	NLRP6	11	278365	285359	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	16	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	NLRP7	19	54923509	54966312	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	17	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	NLRP8	19	55947832	55988629	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	17	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	NLRP9	19	55708432	55738402	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	16	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	NLRX1	11	119166568	119184016	FALSE	728	-0.487905654975058	30	118527582	119195409	1	2	1	1	2	1	667827	1	26	17	1	FALSE	DIPLOID	PASS
659_bTo_pair	NMB	15	84655129	84658563	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	NMBR	6	142058330	142088799	FALSE	429	-0.412609995390511	39	138092232	142443520	NA	2	NA	NA	2	NA	4351288	NA	18	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NMD3	3	161104696	161253532	FALSE	250	-0.231905273142314	46	156829339	161250770	0.298322295679939	3	NA	0.298322295679939	3	NA	4421431	NA	26	15	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	NME1	17	51153536	51162428	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NME1-NME2	17	51153590	51171744	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NME2	17	51165435	51171747	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NME3	16	1770286	1771730	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	NME4	16	396725	410367	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	11	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	NME5	5	138115172	138139443	FALSE	336	-0.752536733071469	19	135941639	138575278	0.365165917639896	1	0	0.365165917639896	1	0	2633639	1	24	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	NME6	3	48290722	48301685	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	NME7	1	169132531	169367967	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	NME8	7	37848597	37900401	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	15	4	FALSE	GAIN	PASS
659_bTo_pair	NME9	3	138261437	138329886	FALSE	244	-0.465451876797886	34	136855703	138629155	NA	2	NA	NA	2	NA	1773452	NA	14	22	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NMI	2	151270465	151290057	FALSE	149	-0.454179855872301	30	147845197	157628657	1	2	1	1	2	1	9783460	1	30	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	NMNAT1	1	9943428	9985501	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	NMNAT2	1	183248237	183418602	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	NMNAT3	3	139560180	139678017	FALSE	246	-0.322519280750539	43	139344000	142447976	0.192136715055622	3	NA	0.192136715055622	3	NA	3103976	NA	19	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	NMRAL1	16	4461680	4495763	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	NMRK1	9	75060573	75088217	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	NMRK2	19	3933103	3942416	FALSE	1122	-0.653400653967241	21	3157829	4037863	0.140309795179477	0	0	0.140309795179477	0	0	880034	0	27	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	NMS	2	100470482	100483280	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	NMT1	17	45051610	45109016	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	12	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NMT2	10	15102584	15168693	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	18	0	FALSE	CNLOH	PASS
659_bTo_pair	NMU	4	55595229	55636698	FALSE	285	-0.676685623676823	22	55346376	64409389	0.291335969972972	1	0	0.291335969972972	1	0	9063013	1	23	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	NMUR1	2	231523160	231530495	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	NMUR2	5	152391532	152433368	FALSE	350	-0.819899512516675	16	150444373	153997804	0.365165917639896	1	0	0.365165917639896	1	0	3553431	1	25	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	NNAT	20	37521206	37523693	FALSE	1205	-0.619744376635615	23	37518926	41023791	0.186356639256811	1	0	0.186356639256811	1	0	3504865	1	19	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	NNMT	11	114257787	114313285	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	NNT	5	43602692	43707405	FALSE	316	-0.143574193475256	49	39021030	43704252	0.365165917639896	3	1	0.365165917639896	3	1	4683222	2	28	21	3	FALSE	GAIN	PASS
659_bTo_pair	NOA1	4	56963370	56978823	FALSE	285	-0.676685623676823	22	55346376	64409389	0.291335969972972	1	0	0.291335969972972	1	0	9063013	1	23	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	NOB1	16	69741867	69754940	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NOBOX	7	144397240	144410227	FALSE	504	-0.812834819860627	15	143573123	148800568	0.21938209893867	0	0	0.21938209893867	0	0	5227445	0	25	15	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	NOC2L	1	944204	959309	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	19	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	NOC3L	10	94333226	94362959	FALSE	662	-0.410954559094016	36	89715119	94762760	0.365165917639896	2	0	0.365165917639896	2	0	5047641	2	33	21	3	FALSE	CNLOH	PASS
659_bTo_pair	NOC4L	12	132144448	132152473	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	NOCT	4	139015789	139045939	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	NOD1	7	30424527	30478784	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	17	3	FALSE	GAIN	PASS
659_bTo_pair	NOD2	16	50693588	50734041	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	NODAL	10	70432315	70447951	FALSE	651	-0.523280686314431	28	68722553	70760843	0.351300687168522	2	0	0.351300687168522	2	0	2038290	2	27	5	0	FALSE	CNLOH	PASS
659_bTo_pair	NOG	17	56593699	56595590	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NOL10	2	10570766	10689987	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	NOL11	17	67717833	67744531	FALSE	1070	-0.476939588153593	30	65635933	68457397	1	2	1	1	2	1	2821464	1	18	19	2	FALSE	DIPLOID	PASS
659_bTo_pair	NOL12	22	37681673	37693478	FALSE	1263	-0.528184158498335	29	36991204	37967644	NA	2	NA	NA	2	NA	976440	NA	31	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NOL3	16	67170154	67175735	FALSE	976	-0.467350965811123	34	67110264	67538977	NA	2	NA	NA	2	NA	428713	NA	24	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NOL4	18	33851100	34224952	FALSE	1095	-0.699288883997088	20	33734323	36718652	0.365165917639896	1	0	0.365165917639896	1	0	2984329	1	17	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	NOL4L	20	32443059	32585074	FALSE	1202	0.844808231617173	76	32358370	32836730	0.364342740527346	10	NA	0.364342740527346	10	NA	478360	NA	7	16	0	FALSE	AMP	PASS
659_bTo_pair	NOL6	9	33461441	33473930	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	26	1	FALSE	CNLOH	PASS
659_bTo_pair	NOL7	6	13615327	13632739	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	NOL8	9	92297358	92325636	FALSE	606	-0.547644280946133	27	91214370	95094057	1	2	1	1	2	1	3879687	1	31	24	0	FALSE	DIPLOID	PASS
659_bTo_pair	NOL9	1	6521347	6554535	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	NOLC1	10	102152176	102163871	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	15	0	FALSE	CNLOH	PASS
659_bTo_pair	NOM1	7	156949723	156973182	FALSE	509	-0.56054035608462	23	152759958	159144708	0.186356639256811	1	0	0.186356639256811	1	0	6384750	1	20	15	6	FALSE	HETLOSS	PASS
659_bTo_pair	NOMO1	16	14833681	14896160	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	28	3	FALSE	DIPLOID	PASS
659_bTo_pair	NOMO2	16	18417325	18562211	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	NOMO3	16	16232495	16294814	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	NONO	23	71283192	71301168	FALSE	1315	-0.668712085705979	22	71290748	71304987	0.291335969972972	1	0	0.291335969972972	1	0	14239	1	2	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	NOP10	15	34341713	34343177	FALSE	888	-0.723950250184678	19	32774281	34342000	0.365165917639896	1	0	0.365165917639896	1	0	1567719	1	10	2	0	TRUE	HETLOSS	PASS
659_bTo_pair	NOP14	4	2937933	2963385	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	22	0	FALSE	GAIN	PASS
659_bTo_pair	NOP16	5	176383938	176388975	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	NOP2	12	6556863	6568691	FALSE	741	-0.251609480735115	44	4489790	6567957	0.345317016959666	3	1	0.345317016959666	3	1	2078167	2	28	18	0	FALSE	GAIN	PASS
659_bTo_pair	NOP53	19	47745522	47757058	FALSE	1187	-0.64296711085636	26	47021158	48297657	NA	2	NA	NA	2	NA	1276499	NA	31	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NOP56	20	2652145	2658393	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	13	2	FALSE	HETLOSS	PASS
659_bTo_pair	NOP58	2	202265716	202303666	FALSE	166	-0.425780118113581	30	201288659	203854096	1	2	1	1	2	1	2565437	1	22	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	NOP9	14	24299862	24309124	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	NOS1	12	117208142	117452170	FALSE	808	-0.531025796359709	27	115966146	120090026	1	2	1	1	2	1	4123880	1	23	33	2	FALSE	DIPLOID	PASS
659_bTo_pair	NOS1AP	1	162069774	162370475	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	NOS2	17	27756766	27800499	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	28	5	FALSE	DIPLOID	PASS
659_bTo_pair	NOS3	7	150990995	151014588	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	27	0	FALSE	HETLOSS	PASS
659_bTo_pair	NOSIP	19	49555711	49590262	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	NOSTRIN	2	168786539	168865514	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	17	1	FALSE	DIPLOID	PASS
659_bTo_pair	NOTCH1	9	136494433	136545786	TRUE	630	0.99080673755466	78	136489472	136672669	0.364342740527346	11	NA	0.364342740527346	11	NA	183197	NA	2	67	10	FALSE	AMP	PASS
659_bTo_pair	NOTCH2	1	119911553	120069626	TRUE	44	-0.0508975396039555	55	119911615	146019534	0.328696605851359	4	NA	0.328696605851359	4	NA	26107919	NA	33	80	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	NOTCH2NLA	1	146146203	146229026	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	NOTCH3	19	15159038	15200981	TRUE	1150	1.68996571363671	95	15159043	15332467	0.364342740527346	21	9	0.364342740527346	21	9	173424	12	3	54	14	FALSE	AMP	PASS
659_bTo_pair	NOTCH4	6	32194843	32224067	TRUE	382	1.0357857800816	81	32192732	32223953	0.364342740527346	12	NA	0.364342740527346	12	NA	31221	NA	2	47	13	FALSE	AMP	PASS
659_bTo_pair	NOTO	2	73202258	73212513	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	NOTUM	17	81952507	81961840	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	NOV	8	119416306	119424353	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	7	0	FALSE	GAIN	PASS
659_bTo_pair	NOVA1	14	26443093	26597754	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	NOVA2	19	45933734	45973546	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	NOX1	23	100843324	100874345	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	14	1	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	NOX3	6	155395370	155455903	FALSE	440	-0.500001062559341	30	152129628	156771069	1	2	1	1	2	1	4641441	1	14	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	NOX4	11	89324356	89498187	FALSE	714	-0.230278951577934	46	86306357	90211282	0.298322295679939	3	NA	0.298322295679939	3	NA	3904925	NA	21	20	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	NOX5	15	68930525	69062743	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	24	0	FALSE	HETLOSS	PASS
659_bTo_pair	NOXA1	9	137423350	137434406	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	NOXO1	16	1978917	1984192	FALSE	938	-0.541386594301884	29	1947002	2038739	NA	2	NA	NA	2	NA	91737	NA	11	8	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NOXRED1	14	77394021	77423517	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	NPAP1	15	24675868	24683393	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	NPAS1	19	47019820	47045775	FALSE	1187	-0.64296711085636	26	47021158	48297657	NA	2	NA	NA	2	NA	1276499	NA	31	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NPAS2	2	100820152	100996829	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	21	3	FALSE	DIPLOID	PASS
659_bTo_pair	NPAS3	14	32934933	33804176	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	NPAS4	11	66421004	66426707	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	13	1	FALSE	GAIN	PASS
659_bTo_pair	NPAT	11	108157215	108222642	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	29	2	FALSE	HETLOSS	PASS
659_bTo_pair	NPB	17	81900745	81902905	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	NPBWR1	8	52938431	52941117	FALSE	543	-0.403572692824667	39	47962754	54147613	NA	2	NA	NA	2	NA	6184859	NA	18	4	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NPBWR2	20	64105820	64107171	FALSE	1225	-0.32421417626258	43	63733191	64273510	0.192136715055622	3	NA	0.192136715055622	3	NA	540319	NA	22	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	NPC1	18	23506184	23586898	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	45	3	FALSE	GAIN	PASS
659_bTo_pair	NPC1L1	7	44512535	44541315	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	26	1	FALSE	GAIN	PASS
659_bTo_pair	NPC2	14	74476192	74494177	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	NPDC1	9	137039470	137046203	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	NPEPL1	20	58689131	58719238	FALSE	1221	-0.44936578355072	34	56249153	58715213	NA	2	NA	NA	2	NA	2466060	NA	27	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NPEPPS	17	47522942	47623276	FALSE	1046	-0.746772159255206	19	45395806	47696360	0.365165917639896	1	0	0.365165917639896	1	0	2300554	1	26	23	1	FALSE	HETLOSS	PASS
659_bTo_pair	NPFF	12	53506690	53507638	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	NPFFR1	10	70247329	70283676	FALSE	651	-0.523280686314431	28	68722553	70760843	0.351300687168522	2	0	0.351300687168522	2	0	2038290	2	27	7	1	FALSE	CNLOH	PASS
659_bTo_pair	NPFFR2	4	72031804	72148067	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	NPHP1	2	110122311	110205066	FALSE	134	-0.415117895462051	39	108786846	111117811	NA	2	NA	NA	2	NA	2330965	NA	16	22	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NPHP3	3	132680609	132722442	FALSE	242	-0.32037413513609	40	130560427	134790274	0.308149309490068	3	1	0.308149309490068	3	1	4229847	2	29	30	1	FALSE	GAIN	PASS
659_bTo_pair	NPHP3-ACAD11	3	132558142	132722459	FALSE	242	-0.32037413513609	40	130560427	134790274	0.308149309490068	3	1	0.308149309490068	3	1	4229847	2	29	69	3	FALSE	GAIN	PASS
659_bTo_pair	NPHP4	1	5862811	5992473	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	31	0	FALSE	DIPLOID	PASS
659_bTo_pair	NPHS1	19	35825964	35869287	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	45	1	FALSE	HETLOSS	PASS
659_bTo_pair	NPHS2	1	179550539	179575952	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	10	2	FALSE	DIPLOID	PASS
659_bTo_pair	NPIPA1	16	14922802	14952060	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	NPIPA5	16	15363624	15381047	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	NPIPA8	16	18317942	18336736	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	NPIPB11	16	29381354	29404029	FALSE	965	-0.735005669796309	19	28989573	29982749	0.365165917639896	1	0	0.365165917639896	1	0	993176	1	25	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	NPIPB12	16	29483642	29505999	FALSE	965	-0.735005669796309	19	28989573	29982749	0.365165917639896	1	0	0.365165917639896	1	0	993176	1	25	1	0	FALSE	HETLOSS	PASS
659_bTo_pair	NPIPB15	16	74377878	74392080	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	7	2	FALSE	DIPLOID	PASS
659_bTo_pair	NPIPB2	16	11927373	11976643	FALSE	954	-0.618769947650953	26	11345676	11941160	NA	2	NA	NA	2	NA	595484	NA	9	12	4	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	NPIPB4	16	21834569	21880827	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	2	1	FALSE	DIPLOID	PASS
659_bTo_pair	NPIPB6	16	28342555	28363508	FALSE	962	-0.522336070959039	29	27403203	28925074	NA	2	NA	NA	2	NA	1521871	NA	25	3	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NPIPB7	16	28456372	28471175	FALSE	962	-0.522336070959039	29	27403203	28925074	NA	2	NA	NA	2	NA	1521871	NA	25	4	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NPL	1	182789293	182830384	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	NPLOC4	17	81556887	81648465	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	25	1	FALSE	DIPLOID	PASS
659_bTo_pair	NPM1	5	171387116	171411137	TRUE	357	1.53197307517613	91	171309384	171416856	0.364342740527346	18	NA	0.364342740527346	18	NA	107472	NA	2	32	7	FALSE	AMP	PASS
659_bTo_pair	NPM2	8	22024125	22036897	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	NPM3	10	101781325	101783413	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	5	0	FALSE	CNLOH	PASS
659_bTo_pair	NPNT	4	105894775	106004027	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	NPPA	1	11845709	11848345	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	NPPB	1	11857464	11858931	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	NPPC	2	231921820	231926403	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	NPR1	1	153678637	153693992	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	24	0	FALSE	DIPLOID	PASS
659_bTo_pair	NPR2	9	35792154	35809732	FALSE	591	0.73474920581053	74	35684233	36036976	0.364342740527346	9	NA	0.364342740527346	9	NA	352743	NA	17	26	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	NPR3	5	32689070	32791724	FALSE	312	-0.206081392785099	47	24487677	35857105	0.365165917639896	3	1	0.365165917639896	3	1	11369428	2	27	13	0	FALSE	GAIN	PASS
659_bTo_pair	NPRL2	3	50347330	50351091	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	NPRL3	16	84271	138860	FALSE	934	-0.725703643263354	19	47610	287124	0.365165917639896	1	0	0.365165917639896	1	0	239514	1	16	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	NPS	10	127549369	127552639	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	2	0	FALSE	CNLOH	PASS
659_bTo_pair	NPSR1	7	34658239	34878332	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	11	0	FALSE	GAIN	PASS
659_bTo_pair	NPTN	15	73560014	73634134	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	NPTX1	17	80467148	80477843	FALSE	1082	-0.489772840961394	34	80288362	80476266	NA	2	NA	NA	2	NA	187904	NA	3	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NPTX2	7	98617297	98629868	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	NPTXR	22	38818452	38843982	FALSE	1265	-0.53141020507802	29	38041114	39152464	NA	2	NA	NA	2	NA	1111350	NA	31	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NPVF	7	25224570	25228486	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	4	0	FALSE	GAIN	PASS
659_bTo_pair	NPW	16	2009926	2020755	FALSE	938	-0.541386594301884	29	1947002	2038739	NA	2	NA	NA	2	NA	91737	NA	11	3	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NPY	7	24284163	24291865	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	4	1	FALSE	GAIN	PASS
659_bTo_pair	NPY1R	4	163323961	163344832	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	NPY2R	4	155208629	155217078	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	NPY4R2	10	47918739	47923524	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	4	0	FALSE	CNLOH	PASS
659_bTo_pair	NPY5R	4	163343939	163351934	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	NQO1	16	69706996	69726951	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	7	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NQO2	6	2987987	3028869	FALSE	366	-0.56930463675583	26	486737	3019480	NA	2	NA	NA	2	NA	2532743	NA	12	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NR0B1	23	30304206	30309598	FALSE	1282	-0.198839212217093	48	28789325	33339312	0.365165917639896	3	NA	0.365165917639896	3	NA	4549987	NA	11	7	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	NR0B2	1	26911489	26913966	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	NR1D1	17	40092787	40100725	FALSE	1030	-0.735138103765796	19	39868404	40278196	0.365165917639896	1	0	0.365165917639896	1	0	409792	1	14	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	NR1D2	3	23945260	23980618	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	NR1H2	19	50329653	50382982	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	21	3	TRUE	HETLOSS	PASS
659_bTo_pair	NR1H3	11	47248300	47269032	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	NR1H4	12	100473708	100564413	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	NR1I2	3	119780484	119818485	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	11	0	FALSE	GAIN	PASS
659_bTo_pair	NR1I3	1	161229666	161238302	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	NR2C1	12	95020229	95073703	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	NR2C2	3	14947584	15053600	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	NR2C2AP	19	19201416	19203424	FALSE	1161	-0.292613860626304	46	19182590	19465611	0.298322295679939	3	NA	0.298322295679939	3	NA	283021	NA	10	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	NR2E1	6	108166058	108188809	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	NR2E3	15	71792638	71818259	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	NR2F1	5	93583224	93594615	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	NR2F2	15	96325938	96340263	FALSE	931	-1.05463640239282	8	93072946	98485928	0.342391532111247	0	0	0.342391532111247	0	0	5412982	0	6	8	0	FALSE	HOMDEL	PASS
659_bTo_pair	NR2F6	19	17231883	17245940	FALSE	1154	-0.533888138892061	27	16361883	17271664	1	2	1	1	2	1	909781	1	23	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	NR3C1	5	143277931	143435512	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	14	3	FALSE	HETLOSS	PASS
659_bTo_pair	NR3C2	4	148078762	148444698	FALSE	300	-0.423460920061428	34	143186078	151174790	NA	2	NA	NA	2	NA	7988712	NA	32	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NR4A1	12	52022832	52059507	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	NR4A2	2	156324432	156342348	FALSE	149	-0.454179855872301	30	147845197	157628657	1	2	1	1	2	1	9783460	1	30	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	NR4A3	9	99821855	99866891	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	NR5A1	9	124481236	124507430	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	NR5A2	1	200027602	200177424	FALSE	60	-0.443336911293225	30	196228264	201209660	1	2	1	1	2	1	4981396	1	29	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	NR6A1	9	124517275	124771310	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	NRAP	10	113588716	113664127	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	45	1	FALSE	CNLOH	PASS
659_bTo_pair	NRARP	9	137300482	137302251	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	NRAS	1	114704469	114716894	FALSE	36	2.31336744070017	110	114704690	114716725	0.364342740527346	34	NA	0.364342740527346	34	NA	12035	NA	1	20	0	FALSE	AMP	PASS
659_bTo_pair	NRBF2	10	63133247	63155031	FALSE	649	-0.498971247588349	34	63133428	68527348	NA	2	NA	NA	2	NA	5393920	NA	15	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NRBP1	2	27427790	27442259	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	NRBP2	8	143833594	143840974	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	NRCAM	7	108147623	108456717	FALSE	488	-0.464127371400283	34	107070260	116559206	NA	2	NA	NA	2	NA	9488946	NA	33	32	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NRDC	1	51789191	51878937	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	35	1	FALSE	DIPLOID	PASS
659_bTo_pair	NRDE2	14	90267856	90332137	FALSE	870	-0.471399657488227	30	81180359	92000019	1	2	1	1	2	1	10819660	1	29	24	2	FALSE	DIPLOID	PASS
659_bTo_pair	NREP	5	111662621	111997464	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	NRF1	7	129611714	129757082	FALSE	494	-0.536776174448359	29	129225418	130685270	NA	2	NA	NA	2	NA	1459852	NA	17	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NRG1	8	31639386	32767959	FALSE	525	-0.288101084371472	45	31033906	32734628	0.279823559258657	3	0	0.279823559258657	3	0	1700722	3	2	549	52	TRUE	CNLOH & GAIN	PASS
659_bTo_pair	NRG2	5	139846779	140043299	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	17	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	NRG3	10	81875314	82987179	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	16	0	FALSE	CNLOH	PASS
659_bTo_pair	NRG4	15	75935969	76059795	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	NRGN	11	124739846	124747210	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	NRIP1	21	14961235	15065936	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	NRIP2	12	2825348	2835544	FALSE	739	-0.369471841682825	39	1104785	3873202	NA	2	NA	NA	2	NA	2768417	NA	20	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NRIP3	11	8980576	9004049	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	NRK	23	105822543	105958610	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	35	0	FALSE	AMP (many states)	PASS
659_bTo_pair	NRL	14	24080107	24115014	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	NRM	6	30688047	30691420	FALSE	379	-0.524744136561063	27	30546321	31270541	1	2	1	1	2	1	724220	1	30	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	NRN1	6	5997999	6007605	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	NRN1L	16	67884805	67888855	FALSE	979	-0.429457644119204	34	67645299	68698317	NA	2	NA	NA	2	NA	1053018	NA	33	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NRP1	10	33177492	33336262	FALSE	640	-0.421497241268382	32	32269100	43094667	0.365165917639896	2	0	0.365165917639896	2	0	10825567	2	20	20	0	FALSE	CNLOH	PASS
659_bTo_pair	NRP2	2	205681990	205798133	FALSE	168	-0.499602545595775	30	203936898	208231285	1	2	1	1	2	1	4294387	1	25	23	1	FALSE	DIPLOID	PASS
659_bTo_pair	NRROS	3	196639686	196662004	FALSE	271	-0.194588974812627	47	196198492	198169864	0.365165917639896	3	1	0.365165917639896	3	1	1971372	2	29	9	0	FALSE	GAIN	PASS
659_bTo_pair	NRSN1	6	24126122	24154900	FALSE	372	-0.417452461149977	39	20546469	24145837	NA	2	NA	NA	2	NA	3599368	NA	5	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NRSN2	20	346782	359660	FALSE	1195	-0.60512265366003	23	87765	1537211	0.186356639256811	1	0	0.186356639256811	1	0	1449446	1	33	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	NRTN	19	5823802	5828324	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	NRXN1	2	49918505	51225575	FALSE	110	-0.435434252584523	30	48441014	54599245	1	2	1	1	2	1	6158231	1	18	36	1	FALSE	DIPLOID	PASS
659_bTo_pair	NRXN2	11	64606174	64723188	FALSE	704	-0.387292846909492	39	64556376	64803187	NA	2	NA	NA	2	NA	246811	NA	7	36	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NRXN3	14	78170373	79868290	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	32	1	FALSE	DIPLOID	PASS
659_bTo_pair	NSA2	5	74766991	74780113	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	NSD1	5	177133025	177300215	TRUE	359	0.191654508238112	62	177081979	177293890	0.364342740527346	5	NA	0.364342740527346	5	NA	211911	NA	2	70	1	TRUE	AMP (many states)	PASS
659_bTo_pair	NSD2	4	1871424	1982207	FALSE	274	-0.506929833619743	29	1810301	1893841	NA	2	NA	NA	2	NA	83540	NA	2	79	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	NSD3	8	38269697	38382272	FALSE	533	1.44153349946304	88	38269851	38275469	0.364342740527346	17	NA	0.364342740527346	17	NA	5618	NA	2	62	0	TRUE	AMP	PASS
659_bTo_pair	NSDHL	23	152830967	152869729	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	8	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	NSF	17	46590669	46757464	FALSE	1046	-0.746772159255206	19	45395806	47696360	0.365165917639896	1	0	0.365165917639896	1	0	2300554	1	26	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	NSFL1C	20	1442162	1473842	FALSE	1195	-0.60512265366003	23	87765	1537211	0.186356639256811	1	0	0.186356639256811	1	0	1449446	1	33	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	NSG1	4	4348140	4419058	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	4	0	FALSE	GAIN	PASS
659_bTo_pair	NSG2	5	174045604	174243501	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	NSL1	1	212726153	212791782	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	NSMAF	8	58583504	58659844	FALSE	548	-0.313898052002086	43	56168306	58659618	0.192136715055622	3	NA	0.192136715055622	3	NA	2491312	NA	10	31	3	FALSE	GAIN (many states)	PASS
659_bTo_pair	NSMCE1	16	27224991	27268794	FALSE	960	-0.449512584299377	34	23658521	27234165	NA	2	NA	NA	2	NA	3575644	NA	16	7	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	NSMCE2	8	125091679	125367120	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	6	0	FALSE	GAIN	PASS
659_bTo_pair	NSMCE3	15	29264992	29269829	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	NSMCE4A	10	121957088	121975217	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	11	1	FALSE	CNLOH	PASS
659_bTo_pair	NSMF	9	137447573	137459334	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	NSRP1	17	30115521	30186475	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	NSUN2	5	6599239	6633291	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	20	5	FALSE	GAIN	PASS
659_bTo_pair	NSUN3	3	94062916	94128545	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	8	0	FALSE	GAIN	PASS
659_bTo_pair	NSUN4	1	46340177	46365152	FALSE	16	-0.485631979032023	30	46175602	48453048	1	2	1	1	2	1	2277446	1	32	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	NSUN5	7	73302517	73308867	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	NSUN6	10	18545561	18659285	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	13	2	FALSE	CNLOH	PASS
659_bTo_pair	NSUN7	4	40749897	40809985	FALSE	280	-0.191477557443324	47	38829296	41740154	0.365165917639896	3	1	0.365165917639896	3	1	2910858	2	22	15	1	FALSE	GAIN	PASS
659_bTo_pair	NT5C	17	75130225	75131795	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	5	2	FALSE	DIPLOID	PASS
659_bTo_pair	NT5C1A	1	39659121	39672038	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	NT5C1B	2	18562872	18589572	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NT5C1B-RDH14	2	18555545	18589564	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NT5C2	10	103088017	103193306	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	21	2	FALSE	CNLOH	PASS
659_bTo_pair	NT5C3A	7	33014113	33062797	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	10	2	FALSE	GAIN	PASS
659_bTo_pair	NT5C3B	17	41825181	41836263	FALSE	1036	-0.764029118419186	19	41624551	42193564	0.365165917639896	1	0	0.365165917639896	1	0	569013	1	25	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	NT5DC1	6	116100849	116249497	FALSE	417	-0.520434008170675	29	114058103	117272433	NA	2	NA	NA	2	NA	3214330	NA	20	21	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NT5DC2	3	52524385	52535054	FALSE	224	-0.84777820586227	13	52412877	52540527	0.365165917639896	1	0	0.365165917639896	1	0	127650	1	7	15	2	FALSE	HETLOSS	PASS
659_bTo_pair	NT5DC3	12	103770453	103841197	FALSE	798	-0.492720037723834	34	102839233	105367537	NA	2	NA	NA	2	NA	2528304	NA	20	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NT5DC4	2	112721486	112742879	FALSE	138	-0.423459519967032	34	112060069	113201423	NA	2	NA	NA	2	NA	1141354	NA	21	19	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NT5E	6	85449584	85495791	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	NT5M	17	17303335	17347663	FALSE	1014	-0.559544539688918	26	17247059	18028347	NA	2	NA	NA	2	NA	781288	NA	10	5	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NTAN1	16	15037853	15056079	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	NTF3	12	5432112	5521536	FALSE	741	-0.251609480735115	44	4489790	6567957	0.345317016959666	3	1	0.345317016959666	3	1	2078167	2	28	4	0	FALSE	GAIN	PASS
659_bTo_pair	NTF4	19	49061066	49065054	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	NTHL1	16	2039815	2047866	TRUE	939	1.0597239568491	81	2039996	2089975	0.364342740527346	12	NA	0.364342740527346	12	NA	49979	NA	3	11	0	FALSE	AMP	PASS
659_bTo_pair	NTM	11	131370478	132336822	FALSE	734	-0.516486951202814	27	128842412	134387591	1	2	1	1	2	1	5545179	1	27	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	NTMT1	9	129608884	129636131	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	13	1	FALSE	HETLOSS	PASS
659_bTo_pair	NTN1	17	9021542	9244000	FALSE	1006	-0.894220729735546	12	8370429	10825247	0.365165917639896	1	0	0.365165917639896	1	0	2454818	1	31	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	NTN3	16	2471499	2474145	FALSE	942	-0.803500535593988	16	2178660	2530995	0.365165917639896	1	0	0.365165917639896	1	0	352335	1	18	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	NTN4	12	95657807	95791152	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	NTN5	19	48661407	48673081	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	NTNG1	1	107140007	107483458	FALSE	32	-0.441874489475641	34	100273343	107324874	NA	2	NA	NA	2	NA	7051531	NA	18	13	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	NTNG2	9	132161676	132244534	FALSE	625	-0.794391185935477	14	131261330	132889947	0.365165917639896	1	0	0.365165917639896	1	0	1628617	1	17	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	NTPCR	1	232950605	232983882	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	NTRK1	1	156815640	156881850	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	85	2	TRUE	DIPLOID	PASS
659_bTo_pair	NTRK2	9	84668551	85027070	FALSE	600	-0.379943666479055	39	84001060	84731654	NA	2	NA	NA	2	NA	730594	NA	3	388	26	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	NTRK3	15	87859751	88256768	FALSE	918	0.0832860340958786	58	87859889	87953145	0.365165917639896	4	1	0.365165917639896	4	1	93256	3	1	826	107	TRUE	GAIN	PASS
659_bTo_pair	NTS	12	85874295	85882992	FALSE	794	-0.258431968401282	46	85301316	91178343	0.298322295679939	3	NA	0.298322295679939	3	NA	5877027	NA	19	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	NTSR1	20	62708837	62762771	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	NTSR2	2	11658178	11670164	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	NUAK1	12	106063340	106140033	FALSE	799	2.16615713574354	107	106063423	106314403	0.364342740527346	30	NA	0.364342740527346	30	NA	250980	NA	3	26	2	FALSE	AMP	PASS
659_bTo_pair	NUAK2	1	205302059	205321791	FALSE	66	-0.597189828646048	26	204618263	205619845	NA	2	NA	NA	2	NA	1001582	NA	13	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NUB1	7	151341699	151378449	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	NUBP1	16	10743786	10769351	FALSE	950	-0.703992637019778	22	10431373	10818487	0.291335969972972	1	0	0.291335969972972	1	0	387114	1	5	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	NUBP2	16	1782901	1789191	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	8	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	NUBPL	14	31489956	31861224	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	NUCB1	19	48900050	48923372	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	NUCB2	11	17208153	17349980	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	NUCKS1	1	205712819	205750276	FALSE	68	-1.34518521733321	4	205718394	205797003	0.365165917639896	0	0	0.365165917639896	0	0	78609	0	3	7	0	FALSE	HOMDEL	PASS
659_bTo_pair	NUDC	1	26900238	26946862	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	NUDCD1	8	109240919	109334385	FALSE	561	-0.210477706860293	47	102652438	116770243	0.365165917639896	3	1	0.365165917639896	3	1	14117805	2	32	14	1	FALSE	GAIN	PASS
659_bTo_pair	NUDCD2	5	163446526	163460140	FALSE	356	-0.773912908266316	17	162095550	171298806	0.365165917639896	1	0	0.365165917639896	1	0	9203256	1	21	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	NUDCD3	7	44379121	44490880	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	7	0	FALSE	GAIN	PASS
659_bTo_pair	NUDT1	7	2242222	2251146	FALSE	450	-0.329551508654045	40	193185	2379492	0.308149309490068	3	1	0.308149309490068	3	1	2186307	2	26	4	0	FALSE	GAIN	PASS
659_bTo_pair	NUDT10	23	51332231	51337525	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	3	0	FALSE	AMP (many states)	PASS
659_bTo_pair	NUDT11	23	51490011	51496596	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	3	0	FALSE	AMP (many states)	PASS
659_bTo_pair	NUDT12	5	103548855	103562793	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	NUDT13	10	73110375	73131828	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	8	0	FALSE	CNLOH	PASS
659_bTo_pair	NUDT14	14	105172938	105181323	FALSE	885	-0.488568816150345	30	104868462	105529782	1	2	1	1	2	1	661320	1	18	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	NUDT15	13	48037567	48047222	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	NUDT16	3	131381671	131388830	FALSE	242	-0.32037413513609	40	130560427	134790274	0.308149309490068	3	1	0.308149309490068	3	1	4229847	2	29	6	1	FALSE	GAIN	PASS
659_bTo_pair	NUDT16L1	16	4693694	4695859	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	NUDT17	1	145845629	145848953	FALSE	44	-0.0508975396039555	55	119911615	146019534	0.328696605851359	4	NA	0.328696605851359	4	NA	26107919	NA	33	7	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	NUDT18	8	22106872	22109419	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	NUDT19	19	32691961	32713796	FALSE	1165	-0.570153591761829	23	29923697	33225768	0.186356639256811	1	0	0.186356639256811	1	0	3302071	1	18	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	NUDT2	9	34329506	34343713	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	3	0	FALSE	CNLOH	PASS
659_bTo_pair	NUDT21	16	56429133	56452199	FALSE	968	-0.505434692233225	30	51151209	56683230	1	2	1	1	2	1	5532021	1	34	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	NUDT22	11	64225941	64230686	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	NUDT3	6	34279679	34392674	FALSE	391	-0.499783837646083	34	33391964	35241176	NA	2	NA	NA	2	NA	1849212	NA	26	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NUDT4	12	93377883	93408146	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	NUDT5	10	12165325	12196144	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	10	0	FALSE	CNLOH	PASS
659_bTo_pair	NUDT6	4	122888697	122922968	FALSE	295	0.44988415470771	66	122620917	122892167	0.364342740527346	7	NA	0.364342740527346	7	NA	271250	NA	4	26	7	TRUE	INDETERMINATE	PASS
659_bTo_pair	NUDT7	16	77722492	77742260	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	NUDT8	11	67627938	67629930	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	5	1	FALSE	GAIN	PASS
659_bTo_pair	NUDT9	4	87422582	87459454	FALSE	291	-0.458701040497953	34	83536708	87613131	NA	2	NA	NA	2	NA	4076423	NA	17	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NUF2	1	163266576	163355764	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	NUFIP1	13	44939249	44989483	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	11	2	FALSE	HETLOSS	PASS
659_bTo_pair	NUFIP2	17	29255836	29294118	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	NUGGC	8	28021964	28083871	FALSE	523	-1.08188475411826	8	27469296	29263060	0.342391532111247	0	0	0.342391532111247	0	0	1793764	0	18	18	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	NUMA1	11	72002864	72080693	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	39	1	FALSE	GAIN	PASS
659_bTo_pair	NUMB	14	73275107	73458617	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	NUMBL	19	40665905	40690972	FALSE	1173	-0.760690164248215	19	40322104	40807873	0.365165917639896	1	0	0.365165917639896	1	0	485769	1	21	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	NUP107	12	68686734	68745809	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	28	3	FALSE	DIPLOID	PASS
659_bTo_pair	NUP133	1	229440260	229508341	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	26	0	FALSE	HETLOSS	PASS
659_bTo_pair	NUP153	6	17615035	17706834	FALSE	370	-0.377368469329801	39	15246548	20212233	NA	2	NA	NA	2	NA	4965685	NA	18	29	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NUP155	5	37288137	37371181	FALSE	314	-0.173277106490387	51	35904615	38924434	0.365165917639896	3	NA	0.365165917639896	3	NA	3019819	NA	16	35	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	NUP160	11	47778087	47848555	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	38	1	FALSE	DIPLOID	PASS
659_bTo_pair	NUP188	9	128947699	129007096	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	45	1	FALSE	HETLOSS	PASS
659_bTo_pair	NUP205	7	135557919	135648757	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	43	1	FALSE	DIPLOID	PASS
659_bTo_pair	NUP210	3	13316235	13420309	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	43	1	FALSE	HETLOSS	PASS
659_bTo_pair	NUP210L	1	153992685	154155116	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	40	1	FALSE	DIPLOID	PASS
659_bTo_pair	NUP214	9	131125561	131234670	FALSE	624	0.866929583397445	76	131120300	131261070	0.364342740527346	10	NA	0.364342740527346	10	NA	140770	NA	3	45	1	FALSE	AMP	PASS
659_bTo_pair	NUP35	2	183117513	183161680	FALSE	157	-0.495064743595466	30	181539293	185786350	1	2	1	1	2	1	4247057	1	12	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	NUP37	12	102073103	102120124	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	NUP43	6	149724315	149749665	FALSE	432	1.4235297149657	88	149658280	149727002	0.364342740527346	17	NA	0.364342740527346	17	NA	68722	NA	2	9	0	TRUE	AMP	PASS
659_bTo_pair	NUP50	22	45163841	45188015	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	9	3	FALSE	CNLOH	PASS
659_bTo_pair	NUP54	4	76114659	76148515	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	NUP58	13	25301524	25349800	FALSE	824	-0.820211361281197	14	23365275	27988570	0.365165917639896	1	0	0.365165917639896	1	0	4623295	1	32	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	NUP62	19	49906825	49929763	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	NUP62CL	23	107123427	107206433	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	6	1	FALSE	AMP (many states)	PASS
659_bTo_pair	NUP85	17	75205659	75235758	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	NUP88	17	5360963	5420160	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	29	2	FALSE	HETLOSS	PASS
659_bTo_pair	NUP93	16	56730105	56850286	FALSE	969	1.83426743726842	100	56684022	56850312	0.364342740527346	23	NA	0.364342740527346	23	NA	166290	NA	2	47	2	FALSE	AMP	PASS
659_bTo_pair	NUP98	11	3671083	3797792	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	36	0	FALSE	HETLOSS	PASS
659_bTo_pair	NUPL2	7	23181827	23201011	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	9	0	FALSE	GAIN	PASS
659_bTo_pair	NUPR1	16	28532708	28539174	FALSE	962	-0.522336070959039	29	27403203	28925074	NA	2	NA	NA	2	NA	1521871	NA	25	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NUPR2	7	56114681	56116400	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	NUS1	6	117675502	117710640	FALSE	421	-0.534093125771784	29	117482879	126348569	NA	2	NA	NA	2	NA	8865690	NA	29	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NUSAP1	15	41332694	41381050	FALSE	894	-0.874433234740196	13	41183964	41662415	0.365165917639896	1	0	0.365165917639896	1	0	478451	1	12	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	NUTF2	16	67846732	67872567	FALSE	979	-0.429457644119204	34	67645299	68698317	NA	2	NA	NA	2	NA	1053018	NA	33	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NUTM1	15	34343315	34357737	FALSE	889	2.06500645081387	105	34343086	34357743	0.364342740527346	28	NA	0.364342740527346	28	NA	14657	NA	2	35	6	FALSE	AMP	PASS
659_bTo_pair	NUTM2A	10	87225448	87236908	FALSE	656	-0.313191165123093	43	86936767	87862427	0.192136715055622	3	NA	0.192136715055622	3	NA	925660	NA	12	6	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	NUTM2B	10	79703227	79714681	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	8	1	FALSE	CNLOH	PASS
659_bTo_pair	NUTM2D	10	87357668	87370695	FALSE	656	-0.313191165123093	43	86936767	87862427	0.192136715055622	3	NA	0.192136715055622	3	NA	925660	NA	12	3	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	NUTM2E	10	79841358	79850878	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	8	2	FALSE	CNLOH	PASS
659_bTo_pair	NUTM2F	9	94318196	94328644	FALSE	606	-0.547644280946133	27	91214370	95094057	1	2	1	1	2	1	3879687	1	31	12	5	FALSE	DIPLOID	PASS
659_bTo_pair	NUTM2G	9	96928310	96940253	FALSE	608	-0.541405085979946	27	95522076	99069752	1	2	1	1	2	1	3547676	1	31	13	3	FALSE	DIPLOID	PASS
659_bTo_pair	NVL	1	224227334	224330387	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	25	4	FALSE	DIPLOID	PASS
659_bTo_pair	NWD1	19	16719976	16817963	FALSE	1154	-0.533888138892061	27	16361883	17271664	1	2	1	1	2	1	909781	1	23	27	1	FALSE	DIPLOID	PASS
659_bTo_pair	NWD2	4	37244220	37449465	FALSE	278	-0.217595572850614	44	20704713	38137253	0.345317016959666	3	1	0.345317016959666	3	1	17432540	2	29	22	1	FALSE	GAIN	PASS
659_bTo_pair	NXF1	11	62792123	62806302	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	20	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	NXF3	23	103075810	103093125	FALSE	1321	0.439394403838451	66	101391440	103377786	0.364342740527346	7	NA	0.364342740527346	7	NA	1986346	NA	34	17	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	NXF5	23	101832112	101857577	FALSE	1321	0.439394403838451	66	101391440	103377786	0.364342740527346	7	NA	0.364342740527346	7	NA	1986346	NA	34	12	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	NXN	17	799313	979770	FALSE	996	-0.883704003468192	13	148164	1298296	0.365165917639896	1	0	0.365165917639896	1	0	1150132	1	14	10	2	FALSE	HETLOSS	PASS
659_bTo_pair	NXNL1	19	17455425	17460954	FALSE	1155	-0.249305971018279	46	17273895	17821522	0.298322295679939	3	NA	0.298322295679939	3	NA	547627	NA	25	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	NXNL2	9	88534033	88584274	FALSE	604	-0.547885090101936	27	85547201	90613824	1	2	1	1	2	1	5066623	1	21	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	NXPE1	11	114521645	114559895	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	NXPE2	11	114678386	114706933	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	NXPE3	3	101779202	101827392	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	9	0	FALSE	GAIN	PASS
659_bTo_pair	NXPE4	11	114570591	114595762	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	NXPH1	7	8433955	8752963	FALSE	456	-0.240618790532325	45	6028682	12688782	0.279823559258657	3	0	0.279823559258657	3	0	6660100	3	32	4	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	NXPH2	2	138670772	138780348	FALSE	145	-0.807795522727044	16	136882284	138780220	0.365165917639896	1	0	0.365165917639896	1	0	1897936	1	4	4	2	FALSE	HETLOSS	PASS
659_bTo_pair	NXPH3	17	49575858	49583827	FALSE	1051	-0.636429062465303	26	48785033	49576193	NA	2	NA	NA	2	NA	791160	NA	15	4	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	NXPH4	12	57216795	57226449	FALSE	780	-0.355982590799428	43	57138514	57456829	0.192136715055622	3	NA	0.192136715055622	3	NA	318315	NA	9	5	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	NXT1	20	23350736	23354777	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	NXT2	23	109535781	109544690	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	NYAP1	7	100483927	100494799	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	NYAP2	2	225399710	225654018	FALSE	184	-0.5591638083862	26	224765734	226731262	NA	2	NA	NA	2	NA	1965528	NA	2	10	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	NYNRIN	14	24398786	24419288	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	26	2	FALSE	DIPLOID	PASS
659_bTo_pair	NYX	23	41447434	41475710	FALSE	1290	-0.118437036786996	53	41447899	44844689	0.273255132087987	4	NA	0.273255132087987	4	NA	3396790	NA	11	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	OAF	11	120210767	120230332	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	OARD1	6	41033627	41097787	FALSE	397	-0.509151429367598	27	37213022	41687167	1	2	1	1	2	1	4474145	1	33	25	4	FALSE	DIPLOID	PASS
659_bTo_pair	OAS1	12	112906777	112933222	FALSE	804	-0.570470066809856	26	112828356	113010483	NA	2	NA	NA	2	NA	182127	NA	4	9	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	OAS2	12	112978395	113011723	FALSE	804	-0.570470066809856	26	112828356	113010483	NA	2	NA	NA	2	NA	182127	NA	4	16	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	OAS3	12	112938352	112973249	FALSE	804	-0.570470066809856	26	112828356	113010483	NA	2	NA	NA	2	NA	182127	NA	4	23	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	OASL	12	121019111	121039242	FALSE	812	-0.468438273619664	34	121006302	121793667	NA	2	NA	NA	2	NA	787365	NA	12	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	OAT	10	124397303	124418976	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	9	0	FALSE	CNLOH	PASS
659_bTo_pair	OAZ1	19	2269509	2273490	FALSE	1120	-0.63588318052236	23	2233887	3062886	0.186356639256811	1	0	0.186356639256811	1	0	828999	1	28	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	OAZ2	15	64687573	64703281	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	OAZ3	1	151762899	151771334	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	OBP2A	9	135546139	135549969	FALSE	629	-0.955558414525678	9	134750808	136485014	0.291955377254426	0	0	0.291955377254426	0	0	1734206	0	30	7	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	OBP2B	9	133205277	133209250	FALSE	627	-0.867007674319489	12	132986776	134157867	0.365165917639896	1	0	0.365165917639896	1	0	1171091	1	28	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	OBSCN	1	228208130	228378874	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	192	31	FALSE	HETLOSS	PASS
659_bTo_pair	OBSL1	2	219550729	219571859	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	40	4	FALSE	HETLOSS	PASS
659_bTo_pair	OC90	8	132024220	132059380	FALSE	565	-0.282741903777565	44	129748604	134610527	0.345317016959666	3	1	0.345317016959666	3	1	4861923	2	18	15	0	FALSE	GAIN	PASS
659_bTo_pair	OCA2	15	27754875	28099358	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	24	0	FALSE	HETLOSS	PASS
659_bTo_pair	OCEL1	19	17226204	17229219	FALSE	1154	-0.533888138892061	27	16361883	17271664	1	2	1	1	2	1	909781	1	23	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	OCIAD1	4	48805212	48861817	FALSE	282	-0.204234033978701	47	41752697	49032685	0.365165917639896	3	1	0.365165917639896	3	1	7279988	2	31	9	1	FALSE	GAIN	PASS
659_bTo_pair	OCIAD2	4	48885019	48906937	FALSE	282	-0.204234033978701	47	41752697	49032685	0.365165917639896	3	1	0.365165917639896	3	1	7279988	2	31	6	0	FALSE	GAIN	PASS
659_bTo_pair	OCLM	1	186400572	186401455	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	OCLN	5	69492292	69558104	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	OCM	7	5879827	5886362	FALSE	455	0.0869447764468888	59	5592963	6026819	0.308533751035793	5	NA	0.308533751035793	5	NA	433856	NA	8	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	OCM2	7	97984684	97991169	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OCRL	23	129539849	129592561	FALSE	1333	-0.260466887002759	46	126819804	129920771	0.298322295679939	3	NA	0.298322295679939	3	NA	3100967	NA	9	25	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	OCSTAMP	20	46540946	46550574	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	ODAM	4	70196496	70204576	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	ODAPH	4	75556048	75565885	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	ODC1	2	10439968	10448504	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	ODF1	8	102551572	102561017	FALSE	560	1.49944678487883	90	102252423	102652198	0.364342740527346	18	NA	0.364342740527346	18	NA	399775	NA	3	4	1	FALSE	AMP	PASS
659_bTo_pair	ODF2	9	128455186	128501292	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	24	1	FALSE	HETLOSS	PASS
659_bTo_pair	ODF2L	1	86346824	86396342	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	19	2	FALSE	DIPLOID	PASS
659_bTo_pair	ODF3	11	196738	200261	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	6	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ODF3B	22	50529710	50532580	FALSE	1272	-0.260847831900416	46	50286270	50731222	0.298322295679939	3	NA	0.298322295679939	3	NA	444952	NA	19	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ODF3L1	15	75723977	75727688	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	ODF3L2	19	463346	474983	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	6	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ODF4	17	8339864	8346048	FALSE	1005	-0.533729334585785	29	8204923	8370291	NA	2	NA	NA	2	NA	165368	NA	9	4	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ODR4	1	186375838	186421378	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	OFD1	23	13734745	13769353	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	25	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	OGA	10	101784443	101818465	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	21	0	FALSE	CNLOH	PASS
659_bTo_pair	OGDH	7	44606572	44709066	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	23	0	FALSE	GAIN	PASS
659_bTo_pair	OGDHL	10	49734643	49762379	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	22	0	FALSE	CNLOH	PASS
659_bTo_pair	OGFOD1	16	56451490	56479100	FALSE	968	-0.505434692233225	30	51151209	56683230	1	2	1	1	2	1	5532021	1	34	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	OGFOD2	12	122974580	122980043	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	OGFOD3	17	82389223	82418637	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	11	2	TRUE	DIPLOID	PASS
659_bTo_pair	OGFR	20	62804835	62814000	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	OGFRL1	6	71288803	71308950	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	10	2	FALSE	DIPLOID	PASS
659_bTo_pair	OGG1	3	9749944	9788219	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	27	0	FALSE	HETLOSS	PASS
659_bTo_pair	OGN	9	92383967	92404696	FALSE	606	-0.547644280946133	27	91214370	95094057	1	2	1	1	2	1	3879687	1	31	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	OGT	23	71533083	71575897	FALSE	1317	0.217996879888221	62	71533297	76176924	0.364342740527346	5	NA	0.364342740527346	5	NA	4643627	NA	35	22	0	FALSE	AMP (many states)	PASS
659_bTo_pair	OIP5	15	41309268	41332621	FALSE	894	-0.874433234740196	13	41183964	41662415	0.365165917639896	1	0	0.365165917639896	1	0	478451	1	12	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	OIT3	10	72893581	72933033	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	11	0	FALSE	CNLOH	PASS
659_bTo_pair	OLA1	2	174072447	174248698	FALSE	153	-0.469039793655258	34	172736055	177217715	NA	2	NA	NA	2	NA	4481660	NA	28	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	OLAH	10	15032227	15073852	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	7	1	FALSE	CNLOH	PASS
659_bTo_pair	OLFM1	9	135075422	135121179	FALSE	629	-0.955558414525678	9	134750808	136485014	0.291955377254426	0	0	0.291955377254426	0	0	1734206	0	30	11	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	OLFM2	19	9853718	9936552	FALSE	1136	-0.657304673205362	21	8981156	10119920	0.140309795179477	0	0	0.140309795179477	0	0	1138764	0	32	9	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	OLFM3	1	101802574	101997030	FALSE	32	-0.441874489475641	34	100273343	107324874	NA	2	NA	NA	2	NA	7051531	NA	18	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	OLFM4	13	53028759	53052057	FALSE	836	-0.444239733377228	32	50956423	72747004	0.365165917639896	2	0	0.365165917639896	2	0	21790581	2	40	9	1	FALSE	CNLOH	PASS
659_bTo_pair	OLFML1	11	7485388	7511377	FALSE	683	-0.403180715137318	35	6615199	8138345	1	2	1	1	2	1	1523146	1	28	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	OLFML2A	9	124777158	124814885	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	12	3	FALSE	HETLOSS	PASS
659_bTo_pair	OLFML2B	1	161983192	162023854	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	OLFML3	1	113979391	114035572	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	OLIG1	21	33070144	33072420	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	OLIG2	21	33025845	33029196	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	OLIG3	6	137492202	137494250	FALSE	428	1.44085434531653	88	137194850	137884668	0.364342740527346	17	NA	0.364342740527346	17	NA	689818	NA	3	4	0	FALSE	AMP	PASS
659_bTo_pair	OLR1	12	10158301	10172138	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	OMA1	1	58415384	58546802	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	OMD	9	92414245	92424461	FALSE	606	-0.547644280946133	27	91214370	95094057	1	2	1	1	2	1	3879687	1	31	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	OMG	17	31272013	31297539	FALSE	1019	1.11370148874887	81	31090043	31387166	0.364342740527346	13	NA	0.364342740527346	13	NA	297123	NA	5	7	0	FALSE	AMP	PASS
659_bTo_pair	OMP	11	77102840	77103331	FALSE	710	-0.314972965919996	43	76659622	77285059	0.192136715055622	3	NA	0.192136715055622	3	NA	625437	NA	8	2	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ONECUT1	15	52756989	52791078	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	ONECUT2	18	57435685	57491297	FALSE	1105	-0.785555027616249	16	52752095	58670682	0.365165917639896	1	0	0.365165917639896	1	0	5918587	1	19	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	ONECUT3	19	1752373	1780988	FALSE	1117	1.60042056965448	93	1609268	1775207	0.364342740527346	19	NA	0.364342740527346	19	NA	165939	NA	2	7	0	TRUE	AMP	PASS
659_bTo_pair	OOEP	6	73368555	73395133	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	4	3	FALSE	DIPLOID	PASS
659_bTo_pair	OOSP2	11	60040275	60048044	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	4	0	FALSE	GAIN	PASS
659_bTo_pair	OPA1	3	193593144	193697823	FALSE	269	-0.263219948753545	44	189957970	195888442	0.345317016959666	3	1	0.345317016959666	3	1	5930472	2	31	31	4	FALSE	GAIN	PASS
659_bTo_pair	OPA3	19	45527427	45602212	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	9	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	OPALIN	10	96343216	96359365	FALSE	663	-0.556688707084635	24	94775074	96952170	0.359751661895656	2	0	0.359751661895656	2	0	2177096	2	21	7	1	FALSE	CNLOH	PASS
659_bTo_pair	OPCML	11	132414977	133532519	FALSE	734	-0.516486951202814	27	128842412	134387591	1	2	1	1	2	1	5545179	1	27	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	OPHN1	23	68042344	68433913	FALSE	1311	0.0481524733197309	56	68048478	70452009	0.365165917639896	4	NA	0.365165917639896	4	NA	2403531	NA	19	24	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	OPLAH	8	144051266	144063965	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	27	0	FALSE	DIPLOID	PASS
659_bTo_pair	OPN1LW	23	154144224	154159032	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	5	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	OPN1MW	23	154182596	154196135	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	1	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	OPN1SW	7	128772491	128775790	FALSE	492	-0.463656181520944	30	126439208	129166764	1	2	1	1	2	1	2727556	1	27	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	OPN3	1	241590102	241677376	FALSE	84	-0.392646983169906	39	241532515	243426393	NA	2	NA	NA	2	NA	1893878	NA	10	22	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	OPN4	10	86654557	86666848	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	12	2	FALSE	CNLOH	PASS
659_bTo_pair	OPN5	6	47781982	47832780	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	OPRD1	1	28812142	28871267	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	OPRK1	8	53225716	53251697	FALSE	543	-0.403572692824667	39	47962754	54147613	NA	2	NA	NA	2	NA	6184859	NA	18	7	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	OPRL1	20	64080173	64100643	FALSE	1225	-0.32421417626258	43	63733191	64273510	0.192136715055622	3	NA	0.192136715055622	3	NA	540319	NA	22	11	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	OPRM1	6	154010496	154246867	FALSE	440	-0.500001062559341	30	152129628	156771069	1	2	1	1	2	1	4641441	1	14	25	3	FALSE	DIPLOID	PASS
659_bTo_pair	OPRPN	4	70397882	70410194	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	OPTC	1	203494143	203508864	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	OPTN	10	13099449	13138308	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	13	1	FALSE	CNLOH	PASS
659_bTo_pair	OR10A2	11	6863057	6874717	FALSE	683	-0.403180715137318	35	6615199	8138345	1	2	1	1	2	1	1523146	1	28	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR10A3	11	7937171	7941708	FALSE	683	-0.403180715137318	35	6615199	8138345	1	2	1	1	2	1	1523146	1	28	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR10A4	11	6876625	6877619	FALSE	683	-0.403180715137318	35	6615199	8138345	1	2	1	1	2	1	1523146	1	28	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR10A5	11	6845652	6846705	FALSE	683	-0.403180715137318	35	6615199	8138345	1	2	1	1	2	1	1523146	1	28	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR10A6	11	7924592	7931268	FALSE	683	-0.403180715137318	35	6615199	8138345	1	2	1	1	2	1	1523146	1	28	4	2	FALSE	DIPLOID	PASS
659_bTo_pair	OR10A7	12	55221025	55221975	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR10AD1	12	48202083	48203387	FALSE	768	-0.491963868457131	34	48045387	49018767	NA	2	NA	NA	2	NA	973380	NA	28	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	OR10AG1	11	55965755	55969945	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR10C1	6	29439306	29440977	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR10D3	11	124183345	124188780	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR10G2	14	21633836	21634940	FALSE	849	-0.198876830204613	48	21522824	22901846	0.365165917639896	3	NA	0.365165917639896	3	NA	1379022	NA	15	4	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	OR10G3	14	21568520	21580076	FALSE	849	-0.198876830204613	48	21522824	22901846	0.365165917639896	3	NA	0.365165917639896	3	NA	1379022	NA	15	4	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	OR10G4	11	124012997	124018732	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	4	4	FALSE	DIPLOID	PASS
659_bTo_pair	OR10G6	11	123994163	123995161	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR10G7	11	124036013	124041325	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR10G8	11	124026798	124030634	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR10G9	11	124023013	124023948	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR10H1	19	15804549	15815664	FALSE	1151	-0.245775583538201	44	15355095	15913929	0.345317016959666	3	1	0.345317016959666	3	1	558834	2	15	4	1	FALSE	GAIN	PASS
659_bTo_pair	OR10H2	19	15728020	15729060	FALSE	1151	-0.245775583538201	44	15355095	15913929	0.345317016959666	3	1	0.345317016959666	3	1	558834	2	15	4	2	FALSE	GAIN	PASS
659_bTo_pair	OR10H3	19	15737985	15742343	FALSE	1151	-0.245775583538201	44	15355095	15913929	0.345317016959666	3	1	0.345317016959666	3	1	558834	2	15	4	2	FALSE	GAIN	PASS
659_bTo_pair	OR10H4	19	15944299	15950350	FALSE	1152	-0.702482358931041	22	15914366	16234459	0.291335969972972	1	0	0.291335969972972	1	0	320093	1	8	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR10H5	19	15787661	15801025	FALSE	1151	-0.245775583538201	44	15355095	15913929	0.345317016959666	3	1	0.345317016959666	3	1	558834	2	15	4	1	FALSE	GAIN	PASS
659_bTo_pair	OR10J1	1	159437845	159443078	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR10J5	1	159535078	159536007	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR10K1	1	158461574	158470857	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR10K2	1	158418210	158426237	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR10P1	12	55636860	55637854	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR10Q1	11	58227882	58228918	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	4	0	FALSE	GAIN	PASS
659_bTo_pair	OR10R2	1	158472220	158480936	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR10S1	11	123976661	123977781	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR10T2	1	158398522	158399466	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	4	2	FALSE	DIPLOID	PASS
659_bTo_pair	OR10V1	11	59712916	59713845	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	4	1	FALSE	GAIN	PASS
659_bTo_pair	OR10W1	11	58266792	58268260	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	5	0	FALSE	GAIN	PASS
659_bTo_pair	OR10X1	1	158578919	158579899	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR10Z1	1	158605268	158612514	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR11A1	6	29425504	29457071	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR11G2	14	20190894	20201075	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR11H1	22	15528159	15529139	FALSE	1240	-0.594689860601271	26	15528179	18606839	NA	2	NA	NA	2	NA	3078660	NA	21	4	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	OR11H12	14	18601045	18602129	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	4	2	FALSE	DIPLOID	PASS
659_bTo_pair	OR11H2	14	19712904	19714332	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	4	3	FALSE	DIPLOID	PASS
659_bTo_pair	OR11H4	14	20239286	20244349	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR11H6	14	20223710	20224702	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR11L1	1	247840928	247841896	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR12D2	6	29395631	29398008	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	4	3	FALSE	DIPLOID	PASS
659_bTo_pair	OR12D3	6	29373423	29375291	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	4	2	FALSE	DIPLOID	PASS
659_bTo_pair	OR13A1	10	45302298	45315608	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	5	0	FALSE	CNLOH	PASS
659_bTo_pair	OR13C2	9	104604671	104605627	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR13C3	9	104535749	104536856	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR13C4	9	104526253	104527209	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR13C5	9	104598457	104599413	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR13C8	9	104569168	104570130	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR13C9	9	104617248	104618204	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR13D1	9	104694379	104695485	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR13F1	9	104504263	104505222	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	4	2	FALSE	DIPLOID	PASS
659_bTo_pair	OR13G1	1	247670812	247679739	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	4	2	FALSE	DIPLOID	PASS
659_bTo_pair	OR13H1	23	131543976	131545056	FALSE	1335	0.100243493544559	59	130066940	134244999	0.308533751035793	5	NA	0.308533751035793	5	NA	4178059	NA	21	4	3	FALSE	AMP (many states)	PASS
659_bTo_pair	OR13J1	9	35869263	35870601	FALSE	591	0.73474920581053	74	35684233	36036976	0.364342740527346	9	NA	0.364342740527346	9	NA	352743	NA	17	4	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	OR14A16	1	247814660	247824119	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR14A2	1	247722957	247724043	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR14C36	1	248348775	248349713	FALSE	87	-0.314267676613758	43	248273681	248522418	0.192136715055622	3	NA	0.192136715055622	3	NA	248737	NA	11	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	OR14I1	1	248681369	248682304	FALSE	88	-0.491817591117162	34	248559031	248918142	NA	2	NA	NA	2	NA	359111	NA	12	4	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	OR14J1	6	29301701	29313017	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR14K1	1	247738615	247739559	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR1A1	17	3207539	3218896	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR1A2	17	3197519	3198448	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	3	1	FALSE	HETLOSS	PASS
659_bTo_pair	OR1B1	9	122628579	122629573	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	4	2	FALSE	HETLOSS	PASS
659_bTo_pair	OR1C1	1	247754846	247760556	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR1D2	17	3088484	3104422	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR1D5	17	3062669	3063607	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR1E1	17	3397104	3398410	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR1E2	17	3432870	3433841	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR1F1	16	3204247	3205188	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR1G1	17	3126584	3127581	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR1I1	19	15082211	15092970	FALSE	1149	-0.413849407553013	38	14562540	15157819	0.164051638880412	2	0	0.164051638880412	2	0	595279	2	17	5	0	FALSE	CNLOH	PASS
659_bTo_pair	OR1J1	9	122476958	122477926	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR1J2	9	122510802	122511743	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR1J4	9	122519141	122520082	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR1K1	9	122800123	122801073	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR1L1	9	122661566	122662648	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	OR1L3	9	122675036	122676153	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR1L4	9	122723990	122724925	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR1L6	9	122742303	122750783	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR1L8	9	122567117	122583384	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	OR1M1	19	9087061	9095669	FALSE	1136	-0.657304673205362	21	8981156	10119920	0.140309795179477	0	0	0.140309795179477	0	0	1138764	0	32	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	OR1N1	9	122526358	122527296	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	OR1N2	9	122553112	122554214	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	4	3	FALSE	HETLOSS	PASS
659_bTo_pair	OR1Q1	9	122614738	122615682	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	OR1S1	11	58212720	58216084	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	4	0	FALSE	GAIN	PASS
659_bTo_pair	OR1S2	11	58203202	58204181	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	4	0	FALSE	GAIN	PASS
659_bTo_pair	OR2A1	7	144312464	144322668	FALSE	504	-0.812834819860627	15	143573123	148800568	0.21938209893867	0	0	0.21938209893867	0	0	5227445	0	25	4	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	OR2A12	7	144086278	144098953	FALSE	504	-0.812834819860627	15	143573123	148800568	0.21938209893867	0	0	0.21938209893867	0	0	5227445	0	25	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	OR2A14	7	144123176	144131188	FALSE	504	-0.812834819860627	15	143573123	148800568	0.21938209893867	0	0	0.21938209893867	0	0	5227445	0	25	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	OR2A2	7	144109514	144110564	FALSE	504	-0.812834819860627	15	143573123	148800568	0.21938209893867	0	0	0.21938209893867	0	0	5227445	0	25	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	OR2A25	7	144069811	144075870	FALSE	504	-0.812834819860627	15	143573123	148800568	0.21938209893867	0	0	0.21938209893867	0	0	5227445	0	25	4	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	OR2A4	6	131699644	131701401	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR2A42	7	144228244	144239605	FALSE	504	-0.812834819860627	15	143573123	148800568	0.21938209893867	0	0	0.21938209893867	0	0	5227445	0	25	2	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	OR2A5	7	144048948	144058845	FALSE	504	-0.812834819860627	15	143573123	148800568	0.21938209893867	0	0	0.21938209893867	0	0	5227445	0	25	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	OR2A7	7	144257663	144264792	FALSE	504	-0.812834819860627	15	143573123	148800568	0.21938209893867	0	0	0.21938209893867	0	0	5227445	0	25	4	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	OR2AE1	7	99875987	99877057	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	OR2AG1	11	6783020	6791558	FALSE	683	-0.403180715137318	35	6615199	8138345	1	2	1	1	2	1	1523146	1	28	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR2AG2	11	6765626	6771976	FALSE	683	-0.403180715137318	35	6615199	8138345	1	2	1	1	2	1	1523146	1	28	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR2AJ1	1	247924889	247935339	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR2AK2	1	247965233	247966386	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR2AP1	12	55572468	55575612	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR2AT4	11	75081753	75096876	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	4	0	FALSE	GAIN	PASS
659_bTo_pair	OR2B11	1	247449118	247458105	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR2B2	6	27911185	27912396	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR2B3	6	29086208	29087313	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR2B6	6	27957241	27958182	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR2C1	16	3355889	3357294	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR2C3	1	247524677	247536440	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR2D2	11	6891490	6892599	FALSE	683	-0.403180715137318	35	6615199	8138345	1	2	1	1	2	1	1523146	1	28	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR2D3	11	6920974	6922043	FALSE	683	-0.403180715137318	35	6615199	8138345	1	2	1	1	2	1	1523146	1	28	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR2F1	7	143954844	143997312	FALSE	504	-0.812834819860627	15	143573123	148800568	0.21938209893867	0	0	0.21938209893867	0	0	5227445	0	25	4	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	OR2F2	7	143935166	143936279	FALSE	504	-0.812834819860627	15	143573123	148800568	0.21938209893867	0	0	0.21938209893867	0	0	5227445	0	25	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	OR2G2	1	247588360	247589313	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR2G3	1	247605586	247606515	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR2G6	1	248508073	248527337	FALSE	87	-0.314267676613758	43	248273681	248522418	0.192136715055622	3	NA	0.192136715055622	3	NA	248737	NA	11	4	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	OR2H1	6	29457181	29464328	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR2H2	6	29585121	29590500	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR2I1P	6	29550407	29557721	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR2J1	6	29099657	29102701	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	4	2	FALSE	DIPLOID	PASS
659_bTo_pair	OR2J2	6	29170907	29175811	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	4	2	FALSE	DIPLOID	PASS
659_bTo_pair	OR2J3	6	29108059	29114770	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR2K2	9	111327483	111330183	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR2L13	1	248095184	248101103	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR2L2	1	248030070	248042305	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR2L3	1	248046836	248063407	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	4	3	FALSE	DIPLOID	PASS
659_bTo_pair	OR2L5	1	248013660	248024276	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR2L8	1	247948858	247949796	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	4	2	FALSE	DIPLOID	PASS
659_bTo_pair	OR2M2	1	248174821	248181067	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR2M3	1	248197265	248212925	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR2M4	1	248231417	248244679	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR2M5	1	248145148	248146086	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR2M7	1	248323630	248324568	FALSE	87	-0.314267676613758	43	248273681	248522418	0.192136715055622	3	NA	0.192136715055622	3	NA	248737	NA	11	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	OR2S2	9	35957108	35958154	FALSE	591	0.73474920581053	74	35684233	36036976	0.364342740527346	9	NA	0.364342740527346	9	NA	352743	NA	17	4	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	OR2T1	1	248403048	248408020	FALSE	87	-0.314267676613758	43	248273681	248522418	0.192136715055622	3	NA	0.192136715055622	3	NA	248737	NA	11	5	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	OR2T10	1	248590487	248597700	FALSE	88	-0.491817591117162	34	248559031	248918142	NA	2	NA	NA	2	NA	359111	NA	12	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	OR2T11	1	248623557	248635091	FALSE	88	-0.491817591117162	34	248559031	248918142	NA	2	NA	NA	2	NA	359111	NA	12	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	OR2T12	1	248290139	248303424	FALSE	87	-0.314267676613758	43	248273681	248522418	0.192136715055622	3	NA	0.192136715055622	3	NA	248737	NA	11	4	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	OR2T2	1	248445512	248455725	FALSE	87	-0.314267676613758	43	248273681	248522418	0.192136715055622	3	NA	0.192136715055622	3	NA	248737	NA	11	4	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	OR2T27	1	248649838	248655528	FALSE	88	-0.491817591117162	34	248559031	248918142	NA	2	NA	NA	2	NA	359111	NA	12	4	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	OR2T29	1	248556912	248562772	FALSE	88	-0.491817591117162	34	248559031	248918142	NA	2	NA	NA	2	NA	359111	NA	12	2	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	OR2T3	1	248473351	248474307	FALSE	87	-0.314267676613758	43	248273681	248522418	0.192136715055622	3	NA	0.192136715055622	3	NA	248737	NA	11	4	3	FALSE	GAIN (many states)	PASS
659_bTo_pair	OR2T33	1	248269917	248277976	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	4	1	TRUE	DIPLOID	PASS
659_bTo_pair	OR2T34	1	248573801	248574757	FALSE	88	-0.491817591117162	34	248559031	248918142	NA	2	NA	NA	2	NA	359111	NA	12	4	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	OR2T35	1	248636356	248645278	FALSE	88	-0.491817591117162	34	248559031	248918142	NA	2	NA	NA	2	NA	359111	NA	12	4	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	OR2T4	1	248361581	248362627	FALSE	87	-0.314267676613758	43	248273681	248522418	0.192136715055622	3	NA	0.192136715055622	3	NA	248737	NA	11	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	OR2T5	1	248488589	248491113	FALSE	87	-0.314267676613758	43	248273681	248522418	0.192136715055622	3	NA	0.192136715055622	3	NA	248737	NA	11	2	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	OR2T6	1	248375746	248391811	FALSE	87	-0.314267676613758	43	248273681	248522418	0.192136715055622	3	NA	0.192136715055622	3	NA	248737	NA	11	4	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	OR2T8	1	247920252	247921956	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	4	3	FALSE	DIPLOID	PASS
659_bTo_pair	OR2V1	5	181123122	181131169	FALSE	363	-0.662769973757303	22	180739384	181260807	0.291335969972972	1	0	0.291335969972972	1	0	521423	1	12	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR2V2	5	181147586	181159285	FALSE	363	-0.662769973757303	22	180739384	181260807	0.291335969972972	1	0	0.291335969972972	1	0	521423	1	12	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR2W1	6	29044213	29045240	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR2W3	1	247895587	247896531	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR2Y1	5	180739042	180740099	FALSE	362	0.432595155869503	66	180601743	180739261	0.364342740527346	7	NA	0.364342740527346	7	NA	137518	NA	2	4	0	TRUE	INDETERMINATE	PASS
659_bTo_pair	OR2Z1	19	8721634	8732160	FALSE	1132	-0.583194501817822	26	7916513	8843246	NA	2	NA	NA	2	NA	926733	NA	25	4	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	OR3A1	17	3291017	3298360	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR3A2	17	3276942	3386317	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR3A3	17	3411370	3424070	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR4A15	11	55367884	55368918	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR4A16	11	55343151	55344231	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR4A47	11	48488717	48489780	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR4A5	11	54706832	54707902	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	5	3	FALSE	DIPLOID	PASS
659_bTo_pair	OR4B1	11	48216810	48217739	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR4C11	11	55602360	55607645	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR4C12	11	49981473	49982535	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR4C13	11	49952391	49953419	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR4C15	11	55554307	55555419	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR4C16	11	55572128	55573060	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	4	2	FALSE	DIPLOID	PASS
659_bTo_pair	OR4C3	11	48324920	48328471	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR4C46	11	54603069	54603998	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR4C5	11	48365485	48366465	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR4C6	11	55662201	55666195	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR4D1	17	58148449	58159555	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	4	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	OR4D10	11	59473315	59479361	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	4	0	FALSE	GAIN	PASS
659_bTo_pair	OR4D11	11	59503576	59504511	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	4	0	FALSE	GAIN	PASS
659_bTo_pair	OR4D2	17	58166982	58171411	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	OR4D5	11	123939543	123940637	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR4D6	11	59456938	59457991	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	4	1	FALSE	GAIN	PASS
659_bTo_pair	OR4D9	11	59511368	59520703	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	4	0	FALSE	GAIN	PASS
659_bTo_pair	OR4E1	14	21667940	21673818	FALSE	849	-0.198876830204613	48	21522824	22901846	0.365165917639896	3	NA	0.365165917639896	3	NA	1379022	NA	15	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	OR4E2	14	21653835	21667642	FALSE	849	-0.198876830204613	48	21522824	22901846	0.365165917639896	3	NA	0.365165917639896	3	NA	1379022	NA	15	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	OR4F15	15	101812202	101820197	FALSE	933	-0.918772702357227	12	98968746	101922991	0.365165917639896	1	0	0.365165917639896	1	0	2954245	1	21	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR4F17	19	107104	117102	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	OR4F21	8	166049	167043	FALSE	510	-0.906181747703467	12	166288	7823395	0.365165917639896	1	0	0.365165917639896	1	0	7657107	1	48	1	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR4F4	15	101922042	101923113	FALSE	933	-0.918772702357227	12	98968746	101922991	0.365165917639896	1	0	0.365165917639896	1	0	2954245	1	21	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR4F5	1	65419	71585	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	OR4F6	15	101803509	101806887	FALSE	933	-0.918772702357227	12	98968746	101922991	0.365165917639896	1	0	0.365165917639896	1	0	2954245	1	21	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR4K1	14	19930917	19936757	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR4K13	14	20029399	20036038	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR4K14	14	20014143	20019307	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR4K15	14	19975444	19976659	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR4K17	14	20110739	20122199	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	5	2	FALSE	DIPLOID	PASS
659_bTo_pair	OR4K2	14	19875142	19883932	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR4K5	14	19920582	19921659	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR4L1	14	20060045	20060983	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR4M1	14	19773504	19783696	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	4	2	FALSE	DIPLOID	PASS
659_bTo_pair	OR4N2	14	19719015	19830253	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	OR4N4	15	22094522	22095472	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR4N5	14	20138820	20145471	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR4P4	11	55635113	55640309	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR4Q3	14	19743571	19749469	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR4S1	11	48306223	48307152	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR4S2	11	55648327	55652854	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR4X1	11	48263861	48264778	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR4X2	11	48245056	48246080	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR51A2	11	4954772	4955713	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR51A4	11	4942831	4947605	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	2	FALSE	HETLOSS	PASS
659_bTo_pair	OR51A7	11	4903783	4909462	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	OR51B2	11	5323359	5324297	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR51B4	11	5301014	5301946	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR51B5	11	5303444	5505652	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	37	13	FALSE	HETLOSS	PASS
659_bTo_pair	OR51B6	11	5351508	5352446	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	3	FALSE	HETLOSS	PASS
659_bTo_pair	OR51D1	11	4637477	4643060	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR51E1	11	4643420	4655488	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR51E2	11	4680171	4697854	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR51F1	11	4768979	4769938	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	3	1	FALSE	HETLOSS	PASS
659_bTo_pair	OR51F2	11	4821321	4822456	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR51G1	11	4923374	4924339	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR51G2	11	4912588	4919350	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR51I1	11	5440570	5441514	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	3	FALSE	HETLOSS	PASS
659_bTo_pair	OR51I2	11	5449323	5456518	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR51L1	11	4994851	5005536	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	OR51M1	11	5383812	5393263	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	5	3	FALSE	HETLOSS	PASS
659_bTo_pair	OR51Q1	11	5422111	5423206	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR51S1	11	4847489	4849238	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR51T1	11	4881819	4882883	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR51V1	11	5199735	5200700	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR52A1	11	5143219	5154757	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR52A5	11	5128776	5138356	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR52B2	11	6169330	6170408	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR52B4	11	4367263	4368386	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR52B6	11	5580877	5581884	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR52D1	11	5488685	5489749	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR52E2	11	5058650	5059627	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	2	FALSE	HETLOSS	PASS
659_bTo_pair	OR52E4	11	5880629	5887079	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR52E5	11	5893208	5902730	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR52E6	11	5840928	5841952	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR52E8	11	5856674	5857734	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR52H1	11	5544489	5548533	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR52I1	11	4593614	4596574	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR52I2	11	4581743	4593340	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR52J3	11	5046526	5047461	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR52K1	11	4482646	4493497	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR52K2	11	4449295	4450361	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR52L1	11	5985892	5986985	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	5	3	FALSE	HETLOSS	PASS
659_bTo_pair	OR52M1	11	4545191	4546144	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR52N1	11	5786471	5791265	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	2	FALSE	HETLOSS	PASS
659_bTo_pair	OR52N2	11	5820314	5821348	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	2	FALSE	HETLOSS	PASS
659_bTo_pair	OR52N4	11	5754243	5755905	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	OR52N5	11	5776165	5783355	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR52R1	11	4803433	4804380	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR52W1	11	6199146	6200259	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR56A1	11	6019336	6034338	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR56A3	11	5938751	5951347	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR56A4	11	5999445	6006946	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	5	2	FALSE	HETLOSS	PASS
659_bTo_pair	OR56A5	11	5967177	5968494	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR56B1	11	5736448	5738522	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	OR56B4	11	6107684	6108835	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR5A1	11	59436469	59451380	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	4	2	FALSE	GAIN	PASS
659_bTo_pair	OR5A2	11	59416969	59426412	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	4	1	FALSE	GAIN	PASS
659_bTo_pair	OR5AC2	3	98087173	98088102	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	4	1	FALSE	GAIN	PASS
659_bTo_pair	OR5AK2	11	56988872	56989867	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	4	2	FALSE	GAIN	PASS
659_bTo_pair	OR5AN1	11	59358895	59371714	FALSE	699	2.39218498245042	112	59210935	59364528	0.364342740527346	36	NA	0.364342740527346	36	NA	153593	NA	2	4	1	TRUE	AMP	PASS
659_bTo_pair	OR5AP2	11	56641466	56642471	FALSE	697	0.105943470317224	59	56412769	56642206	0.308533751035793	5	NA	0.308533751035793	5	NA	229437	NA	9	4	0	TRUE	AMP (many states)	PASS
659_bTo_pair	OR5AR1	11	56663662	56664687	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	4	0	FALSE	GAIN	PASS
659_bTo_pair	OR5AS1	11	56027654	56038191	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR5AU1	14	21148370	21159060	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR5B12	11	58439077	58442758	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	4	0	FALSE	GAIN	PASS
659_bTo_pair	OR5B17	11	58358124	58359069	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	3	0	FALSE	GAIN	PASS
659_bTo_pair	OR5B2	11	58421264	58428121	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	4	0	FALSE	GAIN	PASS
659_bTo_pair	OR5B21	11	58507175	58508105	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	3	0	FALSE	GAIN	PASS
659_bTo_pair	OR5B3	11	58402464	58406874	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	4	1	FALSE	GAIN	PASS
659_bTo_pair	OR5C1	9	122788933	122789895	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR5D13	11	55773438	55774382	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR5D14	11	55795556	55796500	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR5D16	11	55838752	55839738	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR5D18	11	55819607	55820597	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR5F1	11	55993681	55994625	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	3	2	FALSE	DIPLOID	PASS
659_bTo_pair	OR5H1	3	98130721	98138548	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	4	1	FALSE	GAIN	PASS
659_bTo_pair	OR5H14	3	98147479	98156614	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	4	0	FALSE	GAIN	PASS
659_bTo_pair	OR5H15	3	98166696	98169774	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	4	0	FALSE	GAIN	PASS
659_bTo_pair	OR5H2	3	98282888	98283832	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	4	0	FALSE	GAIN	PASS
659_bTo_pair	OR5H6	3	98263252	98265356	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	4	0	FALSE	GAIN	PASS
659_bTo_pair	OR5I1	11	55935456	55936400	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	3	2	FALSE	DIPLOID	PASS
659_bTo_pair	OR5J2	11	56176618	56177556	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR5K1	3	98463201	98472924	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	4	0	FALSE	GAIN	PASS
659_bTo_pair	OR5K2	3	98497604	98498663	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	4	0	FALSE	GAIN	PASS
659_bTo_pair	OR5K3	3	98390666	98391631	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	4	0	FALSE	GAIN	PASS
659_bTo_pair	OR5K4	3	98353854	98354819	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	4	0	FALSE	GAIN	PASS
659_bTo_pair	OR5L1	11	55811367	55812476	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	4	3	FALSE	DIPLOID	PASS
659_bTo_pair	OR5L2	11	55827219	55828154	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	4	2	FALSE	DIPLOID	PASS
659_bTo_pair	OR5M1	11	56609236	56614874	FALSE	697	0.105943470317224	59	56412769	56642206	0.308533751035793	5	NA	0.308533751035793	5	NA	229437	NA	9	4	1	FALSE	AMP (many states)	PASS
659_bTo_pair	OR5M10	11	56576736	56577787	FALSE	697	0.105943470317224	59	56412769	56642206	0.308533751035793	5	NA	0.308533751035793	5	NA	229437	NA	9	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	OR5M11	11	56542262	56543281	FALSE	697	0.105943470317224	59	56412769	56642206	0.308533751035793	5	NA	0.308533751035793	5	NA	229437	NA	9	4	1	FALSE	AMP (many states)	PASS
659_bTo_pair	OR5M3	11	56469274	56473352	FALSE	697	0.105943470317224	59	56412769	56642206	0.308533751035793	5	NA	0.308533751035793	5	NA	229437	NA	9	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	OR5M8	11	56490349	56491395	FALSE	697	0.105943470317224	59	56412769	56642206	0.308533751035793	5	NA	0.308533751035793	5	NA	229437	NA	9	3	0	FALSE	AMP (many states)	PASS
659_bTo_pair	OR5M9	11	56462469	56463401	FALSE	697	0.105943470317224	59	56412769	56642206	0.308533751035793	5	NA	0.308533751035793	5	NA	229437	NA	9	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	OR5P2	11	7795905	7796973	FALSE	683	-0.403180715137318	35	6615199	8138345	1	2	1	1	2	1	1523146	1	28	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR5P3	11	7824818	7830840	FALSE	683	-0.403180715137318	35	6615199	8138345	1	2	1	1	2	1	1523146	1	28	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR5R1	11	56417258	56418232	FALSE	697	0.105943470317224	59	56412769	56642206	0.308533751035793	5	NA	0.308533751035793	5	NA	229437	NA	9	4	2	FALSE	AMP (many states)	PASS
659_bTo_pair	OR5T1	11	56274154	56276819	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR5T2	11	56231282	56234255	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR5T3	11	56252200	56253222	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR5V1	6	29353749	29431967	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	21	7	FALSE	DIPLOID	PASS
659_bTo_pair	OR5W2	11	55913650	55914582	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	4	2	FALSE	DIPLOID	PASS
659_bTo_pair	OR6A2	11	6791736	6799689	FALSE	683	-0.403180715137318	35	6615199	8138345	1	2	1	1	2	1	1523146	1	28	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR6B1	7	144000320	144008793	FALSE	504	-0.812834819860627	15	143573123	148800568	0.21938209893867	0	0	0.21938209893867	0	0	5227445	0	25	4	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	OR6B2	2	240028965	240030456	FALSE	194	-0.588828356865968	23	240025214	241817025	0.186356639256811	1	0	0.186356639256811	1	0	1791811	1	34	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR6B3	2	240045077	240047027	FALSE	194	-0.588828356865968	23	240025214	241817025	0.186356639256811	1	0	0.186356639256811	1	0	1791811	1	34	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	OR6C1	12	55314343	55322364	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR6C2	12	55444069	55453347	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR6C3	12	55330043	55332687	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR6C4	12	55549602	55555832	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR6C6	12	55293988	55296569	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR6C65	12	55400430	55401505	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR6C68	12	55492378	55493316	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR6C70	12	55469200	55470138	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR6C74	12	55247198	55248302	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR6C75	12	55362975	55369279	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR6C76	12	55426254	55427192	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR6F1	1	247711436	247716646	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR6J1	14	22630929	22644352	FALSE	849	-0.198876830204613	48	21522824	22901846	0.365165917639896	3	NA	0.365165917639896	3	NA	1379022	NA	15	5	4	FALSE	GAIN (many states)	PASS
659_bTo_pair	OR6K2	1	158699678	158700652	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR6K3	1	158716327	158720720	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	4	2	FALSE	DIPLOID	PASS
659_bTo_pair	OR6K6	1	158754720	158755891	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR6M1	11	123805335	123806387	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR6N1	1	158747814	158772195	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR6N2	1	158774222	158781204	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR6P1	1	158560606	158570580	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR6Q1	11	58030930	58031931	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	4	3	FALSE	GAIN	PASS
659_bTo_pair	OR6S1	14	20640696	20641691	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR6T1	11	123942785	123943873	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	4	3	FALSE	DIPLOID	PASS
659_bTo_pair	OR6V1	7	143052320	143053347	FALSE	503	-0.495530614890199	34	143026241	143572680	NA	2	NA	NA	2	NA	546439	NA	15	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	OR6X1	11	123753488	123754545	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR6Y1	1	158544550	158554405	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR7A10	19	14840466	14848922	FALSE	1149	-0.413849407553013	38	14562540	15157819	0.164051638880412	2	0	0.164051638880412	2	0	595279	2	17	4	0	FALSE	CNLOH	PASS
659_bTo_pair	OR7A17	19	14878203	14886132	FALSE	1149	-0.413849407553013	38	14562540	15157819	0.164051638880412	2	0	0.164051638880412	2	0	595279	2	17	4	3	FALSE	CNLOH	PASS
659_bTo_pair	OR7A5	19	14824251	14835285	FALSE	1149	-0.413849407553013	38	14562540	15157819	0.164051638880412	2	0	0.164051638880412	2	0	595279	2	17	4	0	FALSE	CNLOH	PASS
659_bTo_pair	OR7C1	19	14789260	14835376	FALSE	1149	-0.413849407553013	38	14562540	15157819	0.164051638880412	2	0	0.164051638880412	2	0	595279	2	17	8	1	FALSE	CNLOH	PASS
659_bTo_pair	OR7C2	19	14941489	14942448	FALSE	1149	-0.413849407553013	38	14562540	15157819	0.164051638880412	2	0	0.164051638880412	2	0	595279	2	17	4	0	FALSE	CNLOH	PASS
659_bTo_pair	OR7D2	19	9178979	9188817	FALSE	1136	-0.657304673205362	21	8981156	10119920	0.140309795179477	0	0	0.140309795179477	0	0	1138764	0	32	4	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	OR7D4	19	9210276	9219589	FALSE	1136	-0.657304673205362	21	8981156	10119920	0.140309795179477	0	0	0.140309795179477	0	0	1138764	0	32	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	OR7E24	19	9247344	9252625	FALSE	1136	-0.657304673205362	21	8981156	10119920	0.140309795179477	0	0	0.140309795179477	0	0	1138764	0	32	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	OR7G1	19	9114828	9115763	FALSE	1136	-0.657304673205362	21	8981156	10119920	0.140309795179477	0	0	0.140309795179477	0	0	1138764	0	32	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	OR7G2	19	9100407	9107475	FALSE	1136	-0.657304673205362	21	8981156	10119920	0.140309795179477	0	0	0.140309795179477	0	0	1138764	0	32	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	OR7G3	19	9126012	9126950	FALSE	1136	-0.657304673205362	21	8981156	10119920	0.140309795179477	0	0	0.140309795179477	0	0	1138764	0	32	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	OR8A1	11	124566660	124582942	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR8B12	11	124539635	124545333	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR8B2	11	124382394	124384462	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	4	4	FALSE	DIPLOID	PASS
659_bTo_pair	OR8B3	11	124395534	124399024	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	4	2	FALSE	DIPLOID	PASS
659_bTo_pair	OR8B4	11	124423904	124424893	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	4	2	FALSE	DIPLOID	PASS
659_bTo_pair	OR8B8	11	124437445	124445696	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR8D1	11	124302831	124315099	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR8D2	11	124319238	124320288	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR8D4	11	123902167	123909229	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	5	2	FALSE	DIPLOID	PASS
659_bTo_pair	OR8G1	11	124241095	124254364	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR8G5	11	124256376	124266218	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR8H1	11	56288462	56292254	FALSE	696	0.0693725033755547	59	56290227	56376589	0.308533751035793	5	NA	0.308533751035793	5	NA	86362	NA	5	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	OR8H2	11	56103687	56107658	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR8H3	11	56122373	56123311	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR8I2	11	56093277	56094286	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR8J1	11	56354291	56361511	FALSE	696	0.0693725033755547	59	56290227	56376589	0.308533751035793	5	NA	0.308533751035793	5	NA	86362	NA	5	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	OR8J3	11	56134721	56140201	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR8K1	11	56345945	56347031	FALSE	696	0.0693725033755547	59	56290227	56376589	0.308533751035793	5	NA	0.308533751035793	5	NA	86362	NA	5	4	1	FALSE	AMP (many states)	PASS
659_bTo_pair	OR8K3	11	56315144	56320639	FALSE	696	0.0693725033755547	59	56290227	56376589	0.308533751035793	5	NA	0.308533751035793	5	NA	86362	NA	5	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	OR8K5	11	56159394	56160317	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	OR8S1	12	48525632	48528103	FALSE	768	-0.491963868457131	34	48045387	49018767	NA	2	NA	NA	2	NA	973380	NA	28	5	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	OR8U1	11	56375624	56376553	FALSE	696	0.0693725033755547	59	56290227	56376589	0.308533751035793	5	NA	0.308533751035793	5	NA	86362	NA	5	4	4	FALSE	AMP (many states)	PASS
659_bTo_pair	OR9A2	7	143026158	143027195	FALSE	503	-0.495530614890199	34	143026241	143572680	NA	2	NA	NA	2	NA	546439	NA	15	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	OR9A4	7	141916399	141920625	FALSE	500	-0.745042700177313	19	140929950	142218464	0.365165917639896	1	0	0.365165917639896	1	0	1288514	1	15	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	OR9G1	11	56699095	56703884	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	4	4	FALSE	GAIN	PASS
659_bTo_pair	OR9G4	11	56741223	56748697	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	5	0	FALSE	GAIN	PASS
659_bTo_pair	OR9I1	11	58116742	58125530	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	4	0	FALSE	GAIN	PASS
659_bTo_pair	OR9K2	12	55126406	55132750	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OR9Q1	11	58023881	58181616	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	13	3	FALSE	GAIN	PASS
659_bTo_pair	OR9Q2	11	58189070	58194053	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	4	0	FALSE	GAIN	PASS
659_bTo_pair	ORAI1	12	121626550	121642677	FALSE	812	-0.468438273619664	34	121006302	121793667	NA	2	NA	NA	2	NA	787365	NA	12	5	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ORAI2	7	102433106	102456821	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	ORAI3	16	30949066	30956461	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	ORC1	1	52372829	52404459	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	ORC2	2	200908973	200963680	FALSE	164	-0.381871160033202	39	198084145	201228955	NA	2	NA	NA	2	NA	3144810	NA	19	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ORC3	6	87590067	87667453	FALSE	407	-0.739487270214454	18	87337082	88963417	0.180216333675297	0	0	0.180216333675297	0	0	1626335	0	11	20	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ORC4	2	147930397	148021604	FALSE	149	-0.454179855872301	30	147845197	157628657	1	2	1	1	2	1	9783460	1	30	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	ORC5	7	104126341	104208047	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	ORC6	16	46689643	46698394	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ORM1	9	114323056	114326475	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	ORM2	9	114329869	114333252	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	ORMDL1	2	189770323	189784371	FALSE	159	-0.50094907723407	34	185815441	189771912	NA	2	NA	NA	2	NA	3956471	NA	17	4	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	ORMDL2	12	55817919	55821879	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	ORMDL3	17	39921041	39927601	FALSE	1030	-0.735138103765796	19	39868404	40278196	0.365165917639896	1	0	0.365165917639896	1	0	409792	1	14	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	OS9	12	57693955	57721557	FALSE	783	2.14320148450594	107	57623476	57694137	0.364342740527346	30	NA	0.364342740527346	30	NA	70661	NA	3	15	0	TRUE	AMP	PASS
659_bTo_pair	OSBP	11	59574398	59616144	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	16	0	FALSE	GAIN	PASS
659_bTo_pair	OSBP2	22	30693782	30907824	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	21	0	FALSE	CNLOH	PASS
659_bTo_pair	OSBPL10	3	31657890	32077580	FALSE	208	1.07643165362814	81	31662106	31989724	0.364342740527346	12	NA	0.364342740527346	12	NA	327618	NA	2	20	3	TRUE	AMP	PASS
659_bTo_pair	OSBPL11	3	125528858	125595090	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	14	1	FALSE	GAIN	PASS
659_bTo_pair	OSBPL1A	18	24162044	24397880	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	27	0	FALSE	GAIN	PASS
659_bTo_pair	OSBPL2	20	62231922	62296213	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	OSBPL3	7	24796539	24981634	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	23	1	FALSE	GAIN	PASS
659_bTo_pair	OSBPL5	11	3087116	3166739	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	24	1	FALSE	HETLOSS	PASS
659_bTo_pair	OSBPL6	2	178194481	178402891	FALSE	155	-0.524315670340053	27	177420364	181062892	1	2	1	1	2	1	3642528	1	16	25	1	FALSE	DIPLOID	PASS
659_bTo_pair	OSBPL7	17	47807372	47821834	FALSE	1048	1.65052761695234	96	47733473	47809385	0.364342740527346	20	NA	0.364342740527346	20	NA	75912	NA	2	23	3	TRUE	AMP	PASS
659_bTo_pair	OSBPL8	12	76351797	76559809	FALSE	793	-0.510041181295141	29	76355979	85286979	NA	2	NA	NA	2	NA	8931000	NA	22	25	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	OSBPL9	1	51577179	51798427	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	37	2	FALSE	DIPLOID	PASS
659_bTo_pair	OSCAR	19	54094668	54102692	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	OSCP1	1	36415827	36450451	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	12	4	FALSE	DIPLOID	PASS
659_bTo_pair	OSER1	20	44196496	44210791	FALSE	1210	-0.476296426145969	34	43513997	45110019	NA	2	NA	NA	2	NA	1596022	NA	26	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	OSGEP	14	20446411	20455105	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	10	3	FALSE	DIPLOID	PASS
659_bTo_pair	OSGEPL1	2	189746660	189763227	FALSE	159	-0.50094907723407	34	185815441	189771912	NA	2	NA	NA	2	NA	3956471	NA	17	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	OSGIN1	16	83948282	83966332	FALSE	987	-0.578642888038652	23	81999201	85806436	0.186356639256811	1	0	0.186356639256811	1	0	3807235	1	31	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	OSGIN2	8	89901849	89927888	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	12	0	TRUE	GAIN	PASS
659_bTo_pair	OSM	22	30262829	30266840	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	5	0	FALSE	CNLOH	PASS
659_bTo_pair	OSMR	5	38845858	38945596	FALSE	314	-0.173277106490387	51	35904615	38924434	0.365165917639896	3	NA	0.365165917639896	3	NA	3019819	NA	16	41	4	TRUE	GAIN (many states)	PASS
659_bTo_pair	OSR1	2	19351485	19358653	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	OSR2	8	98944403	98952104	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	7	0	FALSE	GAIN	PASS
659_bTo_pair	OST4	2	27070472	27071773	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	OSTC	4	108650584	108667820	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OSTF1	9	75088543	75147265	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	OSTM1	6	108041409	108165854	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	OSTN	3	191199241	191265615	FALSE	269	-0.263219948753545	44	189957970	195888442	0.345317016959666	3	1	0.345317016959666	3	1	5930472	2	31	3	0	FALSE	GAIN	PASS
659_bTo_pair	OTC	23	38352545	38421450	FALSE	1286	-0.229369008369366	46	37655739	38687617	0.298322295679939	3	NA	0.298322295679939	3	NA	1031878	NA	12	10	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	OTOA	16	21663971	21761935	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	25	1	FALSE	DIPLOID	PASS
659_bTo_pair	OTOF	2	26457203	26558698	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	51	3	FALSE	DIPLOID	PASS
659_bTo_pair	OTOG	11	17547373	17647150	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	65	10	FALSE	DIPLOID	PASS
659_bTo_pair	OTOGL	12	80099537	80380879	FALSE	793	-0.510041181295141	29	76355979	85286979	NA	2	NA	NA	2	NA	8931000	NA	22	60	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	OTOL1	3	161496808	161503942	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	8	1	FALSE	GAIN	PASS
659_bTo_pair	OTOP1	4	4188803	4226889	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	10	3	FALSE	GAIN	PASS
659_bTo_pair	OTOP2	17	74924275	74933912	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	OTOP3	17	74935719	74949992	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	OTOR	20	16748358	16770062	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OTOS	2	240139026	240144562	FALSE	194	-0.588828356865968	23	240025214	241817025	0.186356639256811	1	0	0.186356639256811	1	0	1791811	1	34	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	OTP	5	77628712	77639688	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	OTUB1	11	63985853	64001811	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	11	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	OTUB2	14	94026329	94048930	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	6	2	FALSE	DIPLOID	PASS
659_bTo_pair	OTUD1	10	23439458	23442390	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	6	0	FALSE	CNLOH	PASS
659_bTo_pair	OTUD3	1	19882513	19912945	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	OTUD4	4	145110838	145180161	FALSE	300	-0.423460920061428	34	143186078	151174790	NA	2	NA	NA	2	NA	7988712	NA	32	36	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	OTUD5	23	48922028	48958386	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	11	0	FALSE	AMP (many states)	PASS
659_bTo_pair	OTUD6A	23	70062491	70064179	FALSE	1311	0.0481524733197309	56	68048478	70452009	0.365165917639896	4	NA	0.365165917639896	4	NA	2403531	NA	19	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	OTUD6B	8	91070196	91087095	FALSE	557	-0.436164323203642	34	90006291	91395139	NA	2	NA	NA	2	NA	1388848	NA	9	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	OTUD7A	15	31475398	31870789	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	OTUD7B	1	149937812	150010676	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	OTULIN	5	14664664	14699711	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	8	0	FALSE	GAIN	PASS
659_bTo_pair	OTULINL	5	14581775	14615007	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	8	0	FALSE	GAIN	PASS
659_bTo_pair	OTX1	2	63050057	63057836	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	OTX2	14	56799905	56810479	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	OVCA2	17	2041936	2043430	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	OVCH1	12	29412474	29497686	FALSE	759	-0.427669886187443	30	25503824	31088026	1	2	1	1	2	1	5584202	1	28	30	4	FALSE	DIPLOID	PASS
659_bTo_pair	OVCH2	11	7689438	7706421	FALSE	683	-0.403180715137318	35	6615199	8138345	1	2	1	1	2	1	1523146	1	28	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	OVGP1	1	111414314	111427777	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	14	4	FALSE	HETLOSS	PASS
659_bTo_pair	OVOL1	11	65787022	65797219	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	6	0	FALSE	GAIN	PASS
659_bTo_pair	OVOL2	20	17956979	18059188	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	OVOL3	19	36111151	36113711	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	OXA1L	14	22766522	22773041	FALSE	849	-0.198876830204613	48	21522824	22901846	0.365165917639896	3	NA	0.365165917639896	3	NA	1379022	NA	15	11	3	FALSE	GAIN (many states)	PASS
659_bTo_pair	OXCT1	5	41730065	41870519	FALSE	316	-0.143574193475256	49	39021030	43704252	0.365165917639896	3	1	0.365165917639896	3	1	4683222	2	28	17	0	FALSE	GAIN	PASS
659_bTo_pair	OXCT2	1	39769523	39771348	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	7	2	FALSE	DIPLOID	PASS
659_bTo_pair	OXER1	2	42762481	42764261	FALSE	106	-0.392858868113437	39	42335725	46184779	NA	2	NA	NA	2	NA	3849054	NA	22	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	OXGR1	13	96985719	96994730	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	5	0	FALSE	CNLOH	PASS
659_bTo_pair	OXLD1	17	81665036	81666635	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	OXNAD1	3	16265160	16350299	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	13	3	FALSE	HETLOSS	PASS
659_bTo_pair	OXR1	8	106359476	106752694	FALSE	561	-0.210477706860293	47	102652438	116770243	0.365165917639896	3	1	0.365165917639896	3	1	14117805	2	32	23	1	FALSE	GAIN	PASS
659_bTo_pair	OXSM	3	25782917	25794534	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	OXSR1	3	38165089	38255488	FALSE	212	-0.750996176556328	19	38165958	40533064	0.365165917639896	1	0	0.365165917639896	1	0	2367106	1	26	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	OXT	20	3071620	3072517	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	OXTR	3	8750408	8769628	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	P2RX1	17	3896592	3916500	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	P2RX2	12	132618776	132622386	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	P2RX3	11	57338374	57370600	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	12	2	FALSE	GAIN	PASS
659_bTo_pair	P2RX4	12	121209857	121234106	FALSE	812	-0.468438273619664	34	121006302	121793667	NA	2	NA	NA	2	NA	787365	NA	12	13	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	P2RX5	17	3672199	3696404	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	P2RX5-TAX1BP3	17	3663063	3696194	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	19	1	FALSE	HETLOSS	PASS
659_bTo_pair	P2RX6	22	21009808	21028830	FALSE	1246	-0.481954888210425	34	21001894	21693896	NA	2	NA	NA	2	NA	692002	NA	14	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	P2RX7	12	121132819	121188032	FALSE	812	-0.468438273619664	34	121006302	121793667	NA	2	NA	NA	2	NA	787365	NA	12	15	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	P2RY1	3	152834693	152841439	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	5	0	FALSE	GAIN	PASS
659_bTo_pair	P2RY10	23	78945332	78961954	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	7	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	P2RY11	19	10111538	10115372	FALSE	1136	-0.657304673205362	21	8981156	10119920	0.140309795179477	0	0	0.140309795179477	0	0	1138764	0	32	7	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	P2RY12	3	151337380	151384812	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	23	3	FALSE	GAIN	PASS
659_bTo_pair	P2RY13	3	151326312	151329548	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	5	1	FALSE	GAIN	PASS
659_bTo_pair	P2RY14	3	151212117	151278467	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	5	0	FALSE	GAIN	PASS
659_bTo_pair	P2RY2	11	73218298	73236352	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	5	0	FALSE	GAIN	PASS
659_bTo_pair	P2RY4	23	70258170	70259764	FALSE	1311	0.0481524733197309	56	68048478	70452009	0.365165917639896	4	NA	0.365165917639896	4	NA	2403531	NA	19	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	P2RY6	11	73264505	73298617	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	6	0	FALSE	GAIN	PASS
659_bTo_pair	P3H1	1	42746335	42767084	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	P3H2	3	189956728	190122437	FALSE	269	-0.263219948753545	44	189957970	195888442	0.345317016959666	3	1	0.345317016959666	3	1	5930472	2	31	17	1	FALSE	GAIN	PASS
659_bTo_pair	P3H3	12	6828410	6839851	FALSE	743	-0.145896859645485	51	6620180	6938488	0.365165917639896	3	NA	0.365165917639896	3	NA	318308	NA	20	15	3	FALSE	GAIN (many states)	PASS
659_bTo_pair	P3H4	17	41801947	41812604	FALSE	1036	-0.764029118419186	19	41624551	42193564	0.365165917639896	1	0	0.365165917639896	1	0	569013	1	25	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	P4HA1	10	73007217	73096974	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	15	0	FALSE	CNLOH	PASS
659_bTo_pair	P4HA2	5	132191838	132295315	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	23	0	FALSE	HETLOSS	PASS
659_bTo_pair	P4HA3	11	74235801	74311657	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	22	1	FALSE	GAIN	PASS
659_bTo_pair	P4HB	17	81843159	81860694	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	P4HTM	3	48989886	49007154	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	PA2G4	12	56104319	56113907	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PAAF1	11	73876699	73931124	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	12	1	FALSE	GAIN	PASS
659_bTo_pair	PABPC1	8	100685816	100722809	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	16	2	FALSE	GAIN	PASS
659_bTo_pair	PABPC1L	20	44910062	44959035	FALSE	1210	-0.476296426145969	34	43513997	45110019	NA	2	NA	NA	2	NA	1596022	NA	26	22	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PABPC1L2A	23	73077276	73079512	FALSE	1317	0.217996879888221	62	71533297	76176924	0.364342740527346	5	NA	0.364342740527346	5	NA	4643627	NA	35	1	0	FALSE	AMP (many states)	PASS
659_bTo_pair	PABPC3	13	25095868	25099254	FALSE	824	-0.820211361281197	14	23365275	27988570	0.365165917639896	1	0	0.365165917639896	1	0	4623295	1	32	8	5	FALSE	HETLOSS	PASS
659_bTo_pair	PABPC4	1	39560816	39576790	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	PABPC4L	4	134196333	134201748	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	PABPC5	23	91434595	91438584	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	5	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	PABPN1	14	23321289	23326185	FALSE	851	2.73742608638706	117	23306902	23322235	0.364342740527346	47	NA	0.364342740527346	47	NA	15333	NA	3	8	0	TRUE	AMP	PASS
659_bTo_pair	PABPN1L	16	88863333	88866660	FALSE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	PACRG	6	162727132	163315492	FALSE	445	0.567075882616504	69	160991940	163563366	0.364342740527346	8	NA	0.364342740527346	8	NA	2571426	NA	5	7	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	PACRGL	4	20696282	20752907	FALSE	277	0.271123815908725	63	17633730	20704492	0.364342740527346	6	NA	0.364342740527346	6	NA	3070762	NA	7	14	0	TRUE	AMP (many states)	PASS
659_bTo_pair	PACS1	11	66070363	66244747	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	25	0	FALSE	GAIN	PASS
659_bTo_pair	PACS2	14	105300563	105398147	FALSE	885	-0.488568816150345	30	104868462	105529782	1	2	1	1	2	1	661320	1	18	27	0	FALSE	DIPLOID	PASS
659_bTo_pair	PACSIN1	6	34466061	34535231	FALSE	391	-0.499783837646083	34	33391964	35241176	NA	2	NA	NA	2	NA	1849212	NA	26	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PACSIN2	22	42835412	43015145	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	17	0	FALSE	CNLOH	PASS
659_bTo_pair	PACSIN3	11	47177525	47186443	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	PADI1	1	17205126	17246005	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	17	2	FALSE	DIPLOID	PASS
659_bTo_pair	PADI2	1	17066761	17119435	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	18	1	FALSE	DIPLOID	PASS
659_bTo_pair	PADI3	1	17249098	17284233	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	18	3	FALSE	DIPLOID	PASS
659_bTo_pair	PADI4	1	17308195	17364004	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	17	3	FALSE	DIPLOID	PASS
659_bTo_pair	PADI6	1	17372196	17401699	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	PAEP	9	135561756	135566955	FALSE	629	-0.955558414525678	9	134750808	136485014	0.291955377254426	0	0	0.291955377254426	0	0	1734206	0	30	6	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PAF1	19	39385852	39391195	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	13	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PAFAH1B1	17	2593210	2685615	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	PAFAH1B2	11	117144267	117176894	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	PAFAH1B3	19	42297033	42303546	FALSE	1179	-0.582084941516902	26	42297317	43535595	NA	2	NA	NA	2	NA	1238278	NA	25	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PAFAH2	1	25959767	25998157	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	PAG1	8	80967810	81112068	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	9	2	FALSE	GAIN	PASS
659_bTo_pair	PAGE1	23	49687450	49695993	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	PAGE2	23	55089008	55092842	FALSE	1303	0.0232492223836125	56	53426353	57488811	0.365165917639896	4	NA	0.365165917639896	4	NA	4062458	NA	32	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PAGE2B	23	55075063	55078909	FALSE	1303	0.0232492223836125	56	53426353	57488811	0.365165917639896	4	NA	0.365165917639896	4	NA	4062458	NA	32	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PAGE3	23	55258412	55264846	FALSE	1303	0.0232492223836125	56	53426353	57488811	0.365165917639896	4	NA	0.365165917639896	4	NA	4062458	NA	32	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PAGE4	23	49829260	49833973	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	PAGE5	23	55220355	55224108	FALSE	1303	0.0232492223836125	56	53426353	57488811	0.365165917639896	4	NA	0.365165917639896	4	NA	4062458	NA	32	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PAGR1	16	29815952	29820117	FALSE	965	-0.735005669796309	19	28989573	29982749	0.365165917639896	1	0	0.365165917639896	1	0	993176	1	25	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	PAH	12	102836885	102958410	FALSE	798	-0.492720037723834	34	102839233	105367537	NA	2	NA	NA	2	NA	2528304	NA	20	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PAICS	4	56435741	56464579	FALSE	285	-0.676685623676823	22	55346376	64409389	0.291335969972972	1	0	0.291335969972972	1	0	9063013	1	23	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	PAIP1	5	43526267	43557758	FALSE	316	-0.143574193475256	49	39021030	43704252	0.365165917639896	3	1	0.365165917639896	3	1	4683222	2	28	11	0	FALSE	GAIN	PASS
659_bTo_pair	PAIP2	5	139341587	139369720	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	3	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PAIP2B	2	71182739	71227083	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	PAK1	11	77321707	77474635	FALSE	711	1.4460700816638	90	77322104	77474072	0.364342740527346	17	NA	0.364342740527346	17	NA	151968	NA	1	24	1	FALSE	AMP	PASS
659_bTo_pair	PAK1IP1	6	10694695	10709782	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	PAK2	3	196739857	196832647	FALSE	271	-0.194588974812627	47	196198492	198169864	0.365165917639896	3	1	0.365165917639896	3	1	1971372	2	29	14	0	FALSE	GAIN	PASS
659_bTo_pair	PAK3	23	110944285	111227361	FALSE	1324	1.06082033979197	81	110944330	111220572	0.364342740527346	12	NA	0.364342740527346	12	NA	276242	NA	1	46	0	TRUE	AMP	PASS
659_bTo_pair	PAK4	19	39125770	39182816	FALSE	1170	1.71299831560278	97	39125801	39182436	0.364342740527346	21	NA	0.364342740527346	21	NA	56635	NA	1	27	2	FALSE	AMP	PASS
659_bTo_pair	PAK5	20	9537389	9839041	FALSE	1198	1.13376050176976	83	9532481	10038445	0.364342740527346	13	NA	0.364342740527346	13	NA	505964	NA	2	36	1	FALSE	AMP	PASS
659_bTo_pair	PAK6	15	40238759	40277487	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	14	1	FALSE	HETLOSS	PASS
659_bTo_pair	PALB2	16	23603160	23641310	TRUE	959	1.07278452295649	81	23603148	23650826	0.364342740527346	12	NA	0.364342740527346	12	NA	47678	NA	2	35	0	FALSE	AMP	PASS
659_bTo_pair	PALD1	10	70478821	70568449	FALSE	651	-0.523280686314431	28	68722553	70760843	0.351300687168522	2	0	0.351300687168522	2	0	2038290	2	27	20	0	FALSE	CNLOH	PASS
659_bTo_pair	PALLD	4	168497066	168928457	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	27	4	FALSE	HETLOSS	PASS
659_bTo_pair	PALM	19	708939	748329	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	10	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PALM2	9	109640788	109946703	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	PALM2-AKAP2	9	109780309	110172512	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	24	0	FALSE	DIPLOID	PASS
659_bTo_pair	PALM3	19	14053365	14059159	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	10	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PALMD	1	99645943	99694541	FALSE	31	-0.34979279123772	43	94820443	100270584	0.192136715055622	3	NA	0.192136715055622	3	NA	5450141	NA	22	12	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	PAM	5	102753981	103031105	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	27	0	FALSE	HETLOSS	PASS
659_bTo_pair	PAM16	16	4331549	4355607	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	PAMR1	11	35431823	35530300	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	PAN2	12	56316223	56334053	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	28	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PAN3	13	28138506	28295335	FALSE	826	-1.08089341655976	8	28138771	28292449	0.342391532111247	0	0	0.342391532111247	0	0	153678	0	1	20	0	FALSE	HOMDEL	PASS
659_bTo_pair	PANK1	10	89579497	89645572	FALSE	661	-0.416223961063407	39	89433340	89714130	NA	2	NA	NA	2	NA	280790	NA	3	12	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PANK2	20	3888839	3929882	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	PANK3	5	168548495	168579600	FALSE	356	-0.773912908266316	17	162095550	171298806	0.365165917639896	1	0	0.365165917639896	1	0	9203256	1	21	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	PANK4	1	2508533	2526628	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	20	1	FALSE	DIPLOID	PASS
659_bTo_pair	PANO1	11	797511	799190	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	3	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PANX1	11	94128928	94181972	FALSE	715	-0.44311716102168	34	90214063	94410681	NA	2	NA	NA	2	NA	4196618	NA	16	7	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PANX2	22	50170731	50180294	FALSE	1271	-0.350898193716427	41	45922979	50285791	0.284729887459054	3	0	0.284729887459054	3	0	4362812	3	30	9	1	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	PANX3	11	124611490	124620356	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	PAOX	10	133379234	133391694	FALSE	676	-0.612597388333807	25	132187132	133626712	0.365165917639896	1	0	0.365165917639896	1	0	1439580	1	27	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	PAPLN	14	73237497	73274640	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	29	1	FALSE	DIPLOID	PASS
659_bTo_pair	PAPOLA	14	96501433	96567111	FALSE	876	-0.546199181806584	27	96039535	102050530	1	2	1	1	2	1	6010995	1	30	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	PAPOLB	7	4857733	4861994	FALSE	453	-0.32600279290147	42	3619174	5500988	0.189552622934988	3	0	0.189552622934988	3	0	1881814	3	12	8	1	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	PAPOLG	2	60756230	60802085	FALSE	115	-0.634329466157074	26	60553165	60797139	NA	2	NA	NA	2	NA	243974	NA	2	22	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PAPPA	9	116153804	116402322	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	31	1	FALSE	DIPLOID	PASS
659_bTo_pair	PAPPA2	1	176463171	176845605	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	33	1	FALSE	DIPLOID	PASS
659_bTo_pair	PAPSS1	4	107590276	107720452	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	14	2	FALSE	DIPLOID	PASS
659_bTo_pair	PAPSS2	10	87659613	87747705	FALSE	656	-0.313191165123093	43	86936767	87862427	0.192136715055622	3	NA	0.192136715055622	3	NA	925660	NA	12	15	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	PAQR3	4	78887127	78939438	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	14	3	FALSE	DIPLOID	PASS
659_bTo_pair	PAQR4	16	2969245	2973489	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	PAQR5	15	69298947	69407780	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	PAQR6	1	156243321	156248117	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	PAQR7	1	25861210	25871253	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	PAQR8	6	52361421	52407777	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	PAQR9	3	142949164	142963682	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	5	0	FALSE	GAIN	PASS
659_bTo_pair	PARD3	10	34109560	34815325	FALSE	640	-0.421497241268382	32	32269100	43094667	0.365165917639896	2	0	0.365165917639896	2	0	10825567	2	20	28	1	FALSE	CNLOH	PASS
659_bTo_pair	PARD3B	2	204545793	205620162	FALSE	168	-0.499602545595775	30	203936898	208231285	1	2	1	1	2	1	4294387	1	25	26	5	FALSE	DIPLOID	PASS
659_bTo_pair	PARD6A	16	67660946	67662778	FALSE	979	-0.429457644119204	34	67645299	68698317	NA	2	NA	NA	2	NA	1053018	NA	33	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PARD6B	20	50731544	50756795	FALSE	1218	-0.459978768286429	34	50587211	53185754	NA	2	NA	NA	2	NA	2598543	NA	12	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PARD6G	18	80157232	80247546	FALSE	1113	-0.883471952658051	12	75410842	80247341	0.365165917639896	1	0	0.365165917639896	1	0	4836499	1	17	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	PARG	10	49818279	49970203	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	16	0	FALSE	CNLOH	PASS
659_bTo_pair	PARK7	1	7954291	7985505	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	PARL	3	183829271	183884933	FALSE	259	-0.260370931250901	44	183654025	185254015	0.345317016959666	3	1	0.345317016959666	3	1	1599990	2	31	10	0	FALSE	GAIN	PASS
659_bTo_pair	PARM1	4	74933095	75050115	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	6	2	FALSE	DIPLOID	PASS
659_bTo_pair	PARN	16	14435701	14632728	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	24	0	FALSE	DIPLOID	PASS
659_bTo_pair	PARP1	1	226360691	226408079	TRUE	76	-0.00392767001280583	55	226359415	226631680	0.328696605851359	4	NA	0.328696605851359	4	NA	272265	NA	2	38	4	FALSE	GAIN (many states)	PASS
659_bTo_pair	PARP10	8	143977153	144012772	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	24	0	FALSE	DIPLOID	PASS
659_bTo_pair	PARP11	12	3791047	3873448	FALSE	739	-0.369471841682825	39	1104785	3873202	NA	2	NA	NA	2	NA	2768417	NA	20	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PARP12	7	140023744	140063721	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	PARP14	3	122680618	122730840	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	29	0	FALSE	GAIN	PASS
659_bTo_pair	PARP15	3	122577602	122639047	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	14	2	FALSE	GAIN	PASS
659_bTo_pair	PARP16	15	65234460	65300618	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	PARP2	14	20343582	20357905	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	16	2	FALSE	DIPLOID	PASS
659_bTo_pair	PARP3	3	51942345	51948867	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	PARP4	13	24420926	24512810	FALSE	824	-0.820211361281197	14	23365275	27988570	0.365165917639896	1	0	0.365165917639896	1	0	4623295	1	32	37	2	FALSE	HETLOSS	PASS
659_bTo_pair	PARP6	15	72241181	72272999	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	PARP8	5	50665899	50846522	FALSE	319	-0.764156631411702	19	50399919	56556187	0.365165917639896	1	0	0.365165917639896	1	0	6156268	1	28	28	0	FALSE	HETLOSS	PASS
659_bTo_pair	PARP9	3	122527924	122564577	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	15	2	FALSE	GAIN	PASS
659_bTo_pair	PARPBP	12	102120185	102197520	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	18	1	FALSE	DIPLOID	PASS
659_bTo_pair	PARS2	1	54756898	54764514	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	PARVA	11	12377185	12535356	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	PARVB	22	43999211	44172949	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	16	0	FALSE	CNLOH	PASS
659_bTo_pair	PARVG	22	44172956	44219533	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	12	1	FALSE	CNLOH	PASS
659_bTo_pair	PASD1	23	151563622	151676739	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	18	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	PASK	2	241106099	241150264	FALSE	194	-0.588828356865968	23	240025214	241817025	0.186356639256811	1	0	0.186356639256811	1	0	1791811	1	34	24	0	FALSE	HETLOSS	PASS
659_bTo_pair	PATE1	11	125746293	125749867	FALSE	732	-0.497254377564454	34	125672754	127000522	NA	2	NA	NA	2	NA	1327768	NA	19	4	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PATE2	11	125776113	125778819	FALSE	732	-0.497254377564454	34	125672754	127000522	NA	2	NA	NA	2	NA	1327768	NA	19	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PATE3	11	125788111	125791600	FALSE	732	-0.497254377564454	34	125672754	127000522	NA	2	NA	NA	2	NA	1327768	NA	19	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PATE4	11	125833316	125840069	FALSE	732	-0.497254377564454	34	125672754	127000522	NA	2	NA	NA	2	NA	1327768	NA	19	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PATJ	1	61742406	62178675	FALSE	21	-0.414935064922519	39	59321678	64830856	NA	2	NA	NA	2	NA	5509178	NA	22	45	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PATL1	11	59636716	59668980	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	19	0	FALSE	GAIN	PASS
659_bTo_pair	PATL2	15	44665732	44711316	FALSE	902	-0.672637691845835	22	43521582	44676538	0.291335969972972	1	0	0.291335969972972	1	0	1154956	1	21	17	0	TRUE	HETLOSS	PASS
659_bTo_pair	PATZ1	22	31325804	31346232	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	11	0	FALSE	CNLOH	PASS
659_bTo_pair	PAWR	12	79574979	79691097	FALSE	793	-0.510041181295141	29	76355979	85286979	NA	2	NA	NA	2	NA	8931000	NA	22	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PAX1	20	21705659	21718486	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	PAX2	10	100735603	100829941	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	13	0	FALSE	CNLOH	PASS
659_bTo_pair	PAX3	2	222199888	222298996	FALSE	178	1.68250212048348	96	222200128	222207818	0.364342740527346	21	NA	0.364342740527346	21	NA	7690	NA	1	84	12	TRUE	AMP	PASS
659_bTo_pair	PAX4	7	127610292	127618114	FALSE	492	-0.463656181520944	30	126439208	129166764	1	2	1	1	2	1	2727556	1	27	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	PAX5	9	36833275	37034185	TRUE	593	2.91433062179202	119	36833353	36840392	0.364342740527346	53	NA	0.364342740527346	53	NA	7039	NA	1	52	1	TRUE	AMP	PASS
659_bTo_pair	PAX6	11	31784779	31818062	FALSE	690	-0.499672577426227	34	26697185	32104345	NA	2	NA	NA	2	NA	5407160	NA	20	12	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PAX7	1	18631006	18748866	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	30	1	FALSE	DIPLOID	PASS
659_bTo_pair	PAX8	2	113215997	113278950	FALSE	139	2.37157880511689	111	113216055	113223159	0.364342740527346	35	NA	0.364342740527346	35	NA	7104	NA	1	95	25	TRUE	AMP	PASS
659_bTo_pair	PAX9	14	36657568	36679715	FALSE	856	-0.275818745994621	46	36581441	37500152	0.298322295679939	3	NA	0.298322295679939	3	NA	918711	NA	4	8	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	PAXBP1	21	32733899	32771858	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	PAXIP1	7	154943687	155003084	FALSE	509	-0.56054035608462	23	152759958	159144708	0.186356639256811	1	0	0.186356639256811	1	0	6384750	1	20	24	3	FALSE	HETLOSS	PASS
659_bTo_pair	PAXX	9	136992418	136993984	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	PBDC1	23	76172936	76178204	FALSE	1317	0.217996879888221	62	71533297	76176924	0.364342740527346	5	NA	0.364342740527346	5	NA	4643627	NA	35	7	0	TRUE	AMP (many states)	PASS
659_bTo_pair	PBK	8	27809620	27838095	FALSE	523	-1.08188475411826	8	27469296	29263060	0.342391532111247	0	0	0.342391532111247	0	0	1793764	0	18	8	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PBLD	10	68282660	68333049	FALSE	649	-0.498971247588349	34	63133428	68527348	NA	2	NA	NA	2	NA	5393920	NA	15	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PBOV1	6	138215986	138218491	FALSE	429	-0.412609995390511	39	138092232	142443520	NA	2	NA	NA	2	NA	4351288	NA	18	2	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PBRM1	3	52545352	52685917	TRUE	225	0.524986960528983	68	52545458	52634827	0.364342740527346	7	NA	0.364342740527346	7	NA	89369	NA	2	54	6	TRUE	INDETERMINATE	PASS
659_bTo_pair	PBX1	1	164555584	164899296	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	PBX2	6	32184741	32190186	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	PBX3	9	125747345	125967377	FALSE	619	-0.820686000870706	14	125203036	127778681	0.365165917639896	1	0	0.365165917639896	1	0	2575645	1	23	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	PBX4	19	19561707	19618916	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	8	0	FALSE	AMP (many states)	PASS
659_bTo_pair	PBXIP1	1	154944076	154956123	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	PC	11	66848233	66958376	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	32	0	FALSE	GAIN	PASS
659_bTo_pair	PCARE	2	29060976	29074261	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	15	4	FALSE	DIPLOID	PASS
659_bTo_pair	PCBD1	10	70882280	70888784	FALSE	652	-0.821968360096703	16	70771379	71285405	0.365165917639896	1	0	0.365165917639896	1	0	514026	1	4	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	PCBD2	5	134904906	135007959	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	PCBP1	2	70087454	70089203	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	PCBP2	12	53452102	53481162	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	PCBP3	21	45643694	45942454	FALSE	1239	-0.568555801579827	23	44960223	46664365	0.186356639256811	1	0	0.186356639256811	1	0	1704142	1	18	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	PCBP4	3	51957454	51974016	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	PCCA	13	100089015	100530437	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	25	1	FALSE	CNLOH	PASS
659_bTo_pair	PCCB	3	136250306	136337896	FALSE	243	0.194698893310263	62	134795430	136855479	0.364342740527346	5	NA	0.364342740527346	5	NA	2060049	NA	6	21	0	FALSE	AMP (many states)	PASS
659_bTo_pair	PCDH1	5	141853111	141879246	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	18	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PCDH10	4	133149315	133208606	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	PCDH11X	23	91779261	92623230	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	19	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	PCDH12	5	141943585	141969741	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	15	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PCDH15	10	53802771	55627942	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	56	1	FALSE	CNLOH	PASS
659_bTo_pair	PCDH17	13	57631810	57729311	FALSE	836	-0.444239733377228	32	50956423	72747004	0.365165917639896	2	0	0.365165917639896	2	0	21790581	2	40	15	0	FALSE	CNLOH	PASS
659_bTo_pair	PCDH18	4	137518918	137532494	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	PCDH19	23	100291644	100410273	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	17	1	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	PCDH20	13	61409685	61415522	FALSE	836	-0.444239733377228	32	50956423	72747004	0.365165917639896	2	0	0.365165917639896	2	0	21790581	2	40	12	1	FALSE	CNLOH	PASS
659_bTo_pair	PCDH7	4	30720415	31146805	FALSE	278	-0.217595572850614	44	20704713	38137253	0.345317016959666	3	1	0.345317016959666	3	1	17432540	2	29	17	0	FALSE	GAIN	PASS
659_bTo_pair	PCDH8	13	52842889	52848641	FALSE	836	-0.444239733377228	32	50956423	72747004	0.365165917639896	2	0	0.365165917639896	2	0	21790581	2	40	13	0	FALSE	CNLOH	PASS
659_bTo_pair	PCDH9	13	66302834	67230445	FALSE	836	-0.444239733377228	32	50956423	72747004	0.365165917639896	2	0	0.365165917639896	2	0	21790581	2	40	16	3	FALSE	CNLOH	PASS
659_bTo_pair	PCDHA1	5	140786136	141012347	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	155	2	TRUE	HOMDEL	suppress_large_homdel
659_bTo_pair	PCDHA10	5	140855883	141012344	FALSE	339	-0.747375863769128	19	140786750	141303022	0.365165917639896	1	0	0.365165917639896	1	0	516272	1	34	64	1	FALSE	HETLOSS	PASS
659_bTo_pair	PCDHA11	5	140868183	141012344	FALSE	339	-0.747375863769128	19	140786750	141303022	0.365165917639896	1	0	0.365165917639896	1	0	516272	1	34	54	1	FALSE	HETLOSS	PASS
659_bTo_pair	PCDHA12	5	140875302	141012344	FALSE	339	-0.747375863769128	19	140786750	141303022	0.365165917639896	1	0	0.365165917639896	1	0	516272	1	34	44	1	FALSE	HETLOSS	PASS
659_bTo_pair	PCDHA13	5	140882208	141012344	FALSE	339	-0.747375863769128	19	140786750	141303022	0.365165917639896	1	0	0.365165917639896	1	0	516272	1	34	35	1	FALSE	HETLOSS	PASS
659_bTo_pair	PCDHA2	5	140794852	141012344	FALSE	339	-0.747375863769128	19	140786750	141303022	0.365165917639896	1	0	0.365165917639896	1	0	516272	1	34	145	2	FALSE	HETLOSS	PASS
659_bTo_pair	PCDHA3	5	140801028	141012344	FALSE	339	-0.747375863769128	19	140786750	141303022	0.365165917639896	1	0	0.365165917639896	1	0	516272	1	34	135	2	FALSE	HETLOSS	PASS
659_bTo_pair	PCDHA4	5	140806929	141012344	FALSE	339	-0.747375863769128	19	140786750	141303022	0.365165917639896	1	0	0.365165917639896	1	0	516272	1	34	124	2	FALSE	HETLOSS	PASS
659_bTo_pair	PCDHA5	5	140821604	141012344	FALSE	339	-0.747375863769128	19	140786750	141303022	0.365165917639896	1	0	0.365165917639896	1	0	516272	1	34	114	2	FALSE	HETLOSS	PASS
659_bTo_pair	PCDHA6	5	140827958	141012344	FALSE	339	-0.747375863769128	19	140786750	141303022	0.365165917639896	1	0	0.365165917639896	1	0	516272	1	34	104	2	FALSE	HETLOSS	PASS
659_bTo_pair	PCDHA7	5	140834248	141012344	FALSE	339	-0.747375863769128	19	140786750	141303022	0.365165917639896	1	0	0.365165917639896	1	0	516272	1	34	94	2	FALSE	HETLOSS	PASS
659_bTo_pair	PCDHA8	5	140841187	141012344	FALSE	339	-0.747375863769128	19	140786750	141303022	0.365165917639896	1	0	0.365165917639896	1	0	516272	1	34	85	2	FALSE	HETLOSS	PASS
659_bTo_pair	PCDHA9	5	140847463	141012344	FALSE	339	-0.747375863769128	19	140786750	141303022	0.365165917639896	1	0	0.365165917639896	1	0	516272	1	34	75	2	FALSE	HETLOSS	PASS
659_bTo_pair	PCDHAC1	5	140926369	141012344	FALSE	339	-0.747375863769128	19	140786750	141303022	0.365165917639896	1	0	0.365165917639896	1	0	516272	1	34	25	1	FALSE	HETLOSS	PASS
659_bTo_pair	PCDHAC2	5	140966235	141012344	FALSE	339	-0.747375863769128	19	140786750	141303022	0.365165917639896	1	0	0.365165917639896	1	0	516272	1	34	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	PCDHB1	5	141051135	141059344	FALSE	339	-0.747375863769128	19	140786750	141303022	0.365165917639896	1	0	0.365165917639896	1	0	516272	1	34	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	PCDHB10	5	141192353	141195642	FALSE	339	-0.747375863769128	19	140786750	141303022	0.365165917639896	1	0	0.365165917639896	1	0	516272	1	34	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	PCDHB11	5	141199582	141203779	FALSE	339	-0.747375863769128	19	140786750	141303022	0.365165917639896	1	0	0.365165917639896	1	0	516272	1	34	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	PCDHB12	5	141208697	141212571	FALSE	339	-0.747375863769128	19	140786750	141303022	0.365165917639896	1	0	0.365165917639896	1	0	516272	1	34	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	PCDHB13	5	141213919	141218979	FALSE	339	-0.747375863769128	19	140786750	141303022	0.365165917639896	1	0	0.365165917639896	1	0	516272	1	34	10	2	FALSE	HETLOSS	PASS
659_bTo_pair	PCDHB14	5	141222932	141227759	FALSE	339	-0.747375863769128	19	140786750	141303022	0.365165917639896	1	0	0.365165917639896	1	0	516272	1	34	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	PCDHB15	5	141245349	141249365	FALSE	339	-0.747375863769128	19	140786750	141303022	0.365165917639896	1	0	0.365165917639896	1	0	516272	1	34	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	PCDHB16	5	141181399	141186399	FALSE	339	-0.747375863769128	19	140786750	141303022	0.365165917639896	1	0	0.365165917639896	1	0	516272	1	34	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	PCDHB2	5	141094578	141098703	FALSE	339	-0.747375863769128	19	140786750	141303022	0.365165917639896	1	0	0.365165917639896	1	0	516272	1	34	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	PCDHB3	5	141100473	141103827	FALSE	339	-0.747375863769128	19	140786750	141303022	0.365165917639896	1	0	0.365165917639896	1	0	516272	1	34	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	PCDHB4	5	141121799	141125623	FALSE	339	-0.747375863769128	19	140786750	141303022	0.365165917639896	1	0	0.365165917639896	1	0	516272	1	34	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	PCDHB5	5	141135218	141138625	FALSE	339	-0.747375863769128	19	140786750	141303022	0.365165917639896	1	0	0.365165917639896	1	0	516272	1	34	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	PCDHB6	5	141150022	141153287	FALSE	339	-0.747375863769128	19	140786750	141303022	0.365165917639896	1	0	0.365165917639896	1	0	516272	1	34	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	PCDHB7	5	141172619	141176383	FALSE	339	-0.747375863769128	19	140786750	141303022	0.365165917639896	1	0	0.365165917639896	1	0	516272	1	34	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	PCDHB8	5	141177790	141180529	FALSE	339	-0.747375863769128	19	140786750	141303022	0.365165917639896	1	0	0.365165917639896	1	0	516272	1	34	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	PCDHB9	5	141187127	141191541	FALSE	339	-0.747375863769128	19	140786750	141303022	0.365165917639896	1	0	0.365165917639896	1	0	516272	1	34	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	PCDHGA1	5	141330571	141512981	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	222	4	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PCDHGA10	5	141412987	141512979	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	74	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PCDHGA11	5	141421047	141512979	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	54	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PCDHGA12	5	141430589	141512979	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	44	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PCDHGA2	5	141338760	141512979	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	212	4	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PCDHGA3	5	141343829	141512979	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	202	4	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PCDHGA4	5	141355025	141512979	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	182	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PCDHGA5	5	141364232	141512979	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	162	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PCDHGA6	5	141373914	141512979	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	143	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PCDHGA7	5	141382739	141512979	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	133	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PCDHGA8	5	141390157	141512979	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	114	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PCDHGA9	5	141402932	141512979	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	94	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PCDHGB1	5	141350102	141512979	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	192	4	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PCDHGB2	5	141360042	141512979	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	172	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PCDHGB3	5	141370264	141512979	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	153	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PCDHGB4	5	141387698	141512979	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	123	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PCDHGB5	5	141397987	141512979	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	104	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PCDHGB6	5	141408021	141512979	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	84	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PCDHGB7	5	141417645	141512979	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	64	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PCDHGC3	5	141475947	141512979	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	34	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PCDHGC4	5	141484997	141512979	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	24	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PCDHGC5	5	141489121	141512979	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PCED1A	20	2835314	2841190	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	PCED1B	12	47079603	47236662	FALSE	766	-0.557616146966431	26	45922034	47968195	NA	2	NA	NA	2	NA	2046161	NA	13	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PCF11	11	83156988	83187451	FALSE	712	-0.188800010767045	48	77590086	86068715	0.365165917639896	3	NA	0.365165917639896	3	NA	8478629	NA	30	28	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PCGF1	2	74505043	74508580	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PCGF2	17	38733897	38749817	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	9	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PCGF3	4	705748	770640	FALSE	272	-0.300029378244858	40	85877	1745020	0.308149309490068	3	1	0.308149309490068	3	1	1659143	2	29	8	0	FALSE	GAIN	PASS
659_bTo_pair	PCGF5	10	91163012	91284331	FALSE	662	-0.410954559094016	36	89715119	94762760	0.365165917639896	2	0	0.365165917639896	2	0	5047641	2	33	9	0	FALSE	CNLOH	PASS
659_bTo_pair	PCGF6	10	103302796	103351144	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	11	0	FALSE	CNLOH	PASS
659_bTo_pair	PCID2	13	113177539	113208715	FALSE	844	-0.576217954819194	24	110150427	113263496	0.359751661895656	2	0	0.359751661895656	2	0	3113069	2	19	16	1	FALSE	CNLOH	PASS
659_bTo_pair	PCIF1	20	45934628	45948023	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	PCK1	20	57561080	57568112	FALSE	1221	-0.44936578355072	34	56249153	58715213	NA	2	NA	NA	2	NA	2466060	NA	27	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PCK2	14	24094053	24110598	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	PCLAF	15	64364311	64387687	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	PCLO	7	82754013	83162930	FALSE	475	-0.558789392330973	26	81950430	85121864	NA	2	NA	NA	2	NA	3171434	NA	5	76	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PCM1	8	17922840	18029944	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	42	3	FALSE	HETLOSS	PASS
659_bTo_pair	PCMT1	6	149749443	149811420	FALSE	433	-0.531492105252902	29	149727245	150020184	NA	2	NA	NA	2	NA	292939	NA	9	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PCMTD1	8	51817575	51899186	FALSE	543	-0.403572692824667	39	47962754	54147613	NA	2	NA	NA	2	NA	6184859	NA	18	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PCMTD2	20	64255695	64287821	FALSE	1225	-0.32421417626258	43	63733191	64273510	0.192136715055622	3	NA	0.192136715055622	3	NA	540319	NA	22	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PCNA	20	5114953	5126626	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	PCNP	3	101574095	101594437	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	6	0	FALSE	GAIN	PASS
659_bTo_pair	PCNT	21	46324122	46445769	FALSE	1239	-0.568555801579827	23	44960223	46664365	0.186356639256811	1	0	0.186356639256811	1	0	1704142	1	18	63	11	FALSE	HETLOSS	PASS
659_bTo_pair	PCNX1	14	70907405	71115382	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	43	1	FALSE	DIPLOID	PASS
659_bTo_pair	PCNX2	1	232983435	233295713	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	45	2	FALSE	HETLOSS	PASS
659_bTo_pair	PCNX3	11	65615773	65637439	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	42	1	FALSE	GAIN	PASS
659_bTo_pair	PCNX4	14	60091911	60169133	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	25	6	FALSE	DIPLOID	PASS
659_bTo_pair	PCOLCE	7	100602177	100608175	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	PCOLCE2	3	142815922	142889206	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	10	0	FALSE	GAIN	PASS
659_bTo_pair	PCP2	19	7631611	7633748	FALSE	1130	-0.690953718254595	21	7440128	7870576	0.140309795179477	0	0	0.140309795179477	0	0	430448	0	25	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PCP4	21	39867317	39929397	FALSE	1230	-0.572411047461507	26	38805300	41452836	NA	2	NA	NA	2	NA	2647536	NA	17	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PCP4L1	1	161258727	161285450	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	PCSK1	5	96390415	96434143	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	17	1	FALSE	HETLOSS	PASS
659_bTo_pair	PCSK1N	23	48831094	48835633	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	6	0	FALSE	AMP (many states)	PASS
659_bTo_pair	PCSK2	20	17226107	17484578	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	PCSK4	19	1481428	1490752	FALSE	1116	-0.668595541323287	22	1229189	1605424	0.291335969972972	1	0	0.291335969972972	1	0	376235	1	21	16	1	FALSE	HETLOSS	PASS
659_bTo_pair	PCSK5	9	75890644	76362339	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	44	1	FALSE	DIPLOID	PASS
659_bTo_pair	PCSK6	15	101297142	101525202	FALSE	933	-0.918772702357227	12	98968746	101922991	0.365165917639896	1	0	0.365165917639896	1	0	2954245	1	21	24	0	FALSE	HETLOSS	PASS
659_bTo_pair	PCSK7	11	117204337	117232525	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	PCSK9	1	55039548	55064852	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	PCTP	17	55750979	55842830	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	8	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PCYOX1	2	70257386	70281191	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	PCYOX1L	5	149358007	149369653	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	PCYT1A	3	196214222	196287957	FALSE	271	-0.194588974812627	47	196198492	198169864	0.365165917639896	3	1	0.365165917639896	3	1	1971372	2	29	18	0	FALSE	GAIN	PASS
659_bTo_pair	PCYT1B	23	24558087	24672677	FALSE	1280	-0.105034146595124	53	24465460	24995963	0.273255132087987	4	NA	0.273255132087987	4	NA	530503	NA	3	10	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PCYT2	17	81900965	81911464	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	PDAP1	7	99392048	99408829	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	PDC	1	186443566	186461122	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	PDCD1	2	241849881	241858908	FALSE	195	2.2461590566361	109	241850169	241852966	0.364342740527346	32	NA	0.364342740527346	32	NA	2797	NA	1	11	3	TRUE	AMP	PASS
659_bTo_pair	PDCD10	3	167683298	167734939	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	7	0	FALSE	GAIN	PASS
659_bTo_pair	PDCD11	10	103396626	103446292	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	40	4	FALSE	CNLOH	PASS
659_bTo_pair	PDCD1LG2	9	5510570	5571254	FALSE	578	1.99473684462552	104	5467901	5629429	0.364342740527346	27	NA	0.364342740527346	27	NA	161528	NA	3	14	3	FALSE	AMP	PASS
659_bTo_pair	PDCD2	6	170575295	170584692	FALSE	449	-0.520973998932362	27	167374374	170584540	1	2	1	1	2	1	3210166	1	18	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	PDCD2L	19	34404384	34426168	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	PDCD4	10	110871795	110900006	FALSE	671	-0.443752838916331	34	110781853	112815244	NA	2	NA	NA	2	NA	2033391	NA	10	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PDCD5	19	32581068	32587452	FALSE	1165	-0.570153591761829	23	29923697	33225768	0.186356639256811	1	0	0.186356639256811	1	0	3302071	1	18	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	PDCD6	5	271621	353856	FALSE	308	-0.255094097331532	44	92297	1246091	0.345317016959666	3	1	0.345317016959666	3	1	1153794	2	18	6	1	FALSE	GAIN	PASS
659_bTo_pair	PDCD6IP	3	33798352	33869707	FALSE	209	-0.637968449787088	26	31990360	37328493	NA	2	NA	NA	2	NA	5338133	NA	26	20	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PDCD7	15	65117379	65133836	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	PDCL	9	122798389	122828631	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	PDCL2	4	55556525	55592212	FALSE	285	-0.676685623676823	22	55346376	64409389	0.291335969972972	1	0	0.291335969972972	1	0	9063013	1	23	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	PDCL3	2	100562690	100576735	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	PDE10A	6	165327287	165988078	FALSE	447	-0.721809212356928	19	165280135	167033904	0.365165917639896	1	0	0.365165917639896	1	0	1753769	1	11	23	0	FALSE	HETLOSS	PASS
659_bTo_pair	PDE11A	2	177623252	178108339	FALSE	155	-0.524315670340053	27	177420364	181062892	1	2	1	1	2	1	3642528	1	16	24	2	FALSE	DIPLOID	PASS
659_bTo_pair	PDE12	3	57556276	57566844	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	PDE1A	2	182140036	182523192	FALSE	157	-0.495064743595466	30	181539293	185786350	1	2	1	1	2	1	4247057	1	12	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	PDE1B	12	54549350	54579239	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	PDE1C	7	31751179	32299329	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	22	1	FALSE	GAIN	PASS
659_bTo_pair	PDE2A	11	72576141	72674591	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	33	3	FALSE	GAIN	PASS
659_bTo_pair	PDE3A	12	20369245	20684381	FALSE	755	-0.347739111320178	43	18683333	21462024	0.192136715055622	3	NA	0.192136715055622	3	NA	2778691	NA	14	23	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	PDE3B	11	14643723	14872044	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	21	1	FALSE	DIPLOID	PASS
659_bTo_pair	PDE4A	19	10416773	10469631	FALSE	1139	-0.718742930681428	18	10252235	10467338	0.180216333675297	0	0	0.180216333675297	0	0	215103	0	13	24	1	TRUE	HOMDEL	suppress_large_homdel
659_bTo_pair	PDE4B	1	65792514	66374579	FALSE	23	-0.326404897444941	43	65224778	71080923	0.192136715055622	3	NA	0.192136715055622	3	NA	5856145	NA	29	22	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PDE4C	19	18208652	18248200	FALSE	1159	-0.165917001507678	49	18177228	19138502	0.365165917639896	3	1	0.365165917639896	3	1	961274	2	36	18	1	FALSE	GAIN	PASS
659_bTo_pair	PDE4D	5	58969038	60522120	FALSE	323	-0.645106866010582	25	58495036	67196614	0.365165917639896	1	0	0.365165917639896	1	0	8701578	1	31	27	0	FALSE	HETLOSS	PASS
659_bTo_pair	PDE4DIP	1	148808181	149048286	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	50	4	FALSE	DIPLOID	PASS
659_bTo_pair	PDE5A	4	119494395	119628991	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	24	0	FALSE	DIPLOID	PASS
659_bTo_pair	PDE6A	5	149857955	149944793	FALSE	344	-0.892413249330443	13	149616577	150050506	0.365165917639896	1	0	0.365165917639896	1	0	433929	1	6	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	PDE6B	4	625584	670782	FALSE	272	-0.300029378244858	40	85877	1745020	0.308149309490068	3	1	0.308149309490068	3	1	1659143	2	29	23	0	FALSE	GAIN	PASS
659_bTo_pair	PDE6C	10	93612588	93666010	FALSE	662	-0.410954559094016	36	89715119	94762760	0.365165917639896	2	0	0.365165917639896	2	0	5047641	2	33	24	4	FALSE	CNLOH	PASS
659_bTo_pair	PDE6D	2	231732425	231786272	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	PDE6G	17	81650459	81663112	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	PDE6H	12	14973022	14981865	FALSE	753	-0.517160615058114	27	12726042	18242949	1	2	1	1	2	1	5516907	1	31	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	PDE7A	8	65717510	65842322	FALSE	550	-0.186881774239562	48	60208949	67746087	0.365165917639896	3	NA	0.365165917639896	3	NA	7537138	NA	33	14	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PDE7B	6	135851696	136195574	FALSE	427	-0.614116824618693	26	135285680	137161691	NA	2	NA	NA	2	NA	1876011	NA	10	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PDE8A	15	84980440	85139145	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	22	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PDE8B	5	77210449	77429807	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	24	0	FALSE	HETLOSS	PASS
659_bTo_pair	PDE9A	21	42653636	42775509	FALSE	1234	-0.544212636077936	27	41740855	44141314	1	2	1	1	2	1	2400459	1	31	21	1	FALSE	DIPLOID	PASS
659_bTo_pair	PDF	16	69328621	69330595	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PDGFA	7	497258	520296	FALSE	450	-0.329551508654045	40	193185	2379492	0.308149309490068	3	1	0.308149309490068	3	1	2186307	2	26	8	2	FALSE	GAIN	PASS
659_bTo_pair	PDGFB	22	39223359	39244751	FALSE	1266	2.28075476218983	110	39223527	39244796	0.364342740527346	33	NA	0.364342740527346	33	NA	21269	NA	1	17	0	FALSE	AMP	PASS
659_bTo_pair	PDGFC	4	156760454	156971394	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	PDGFD	11	103907186	104164379	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	PDGFRA	4	54229097	54298247	FALSE	283	-0.7726728361031	19	49038034	54241294	0.365165917639896	1	0	0.365165917639896	1	0	5203260	1	15	64	0	TRUE	HETLOSS	PASS
659_bTo_pair	PDGFRB	5	150113837	150155872	FALSE	346	1.77989563349448	98	150081006	150115808	0.364342740527346	22	NA	0.364342740527346	22	NA	34802	NA	2	39	5	TRUE	AMP	PASS
659_bTo_pair	PDGFRL	8	17576433	17644071	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	8	2	FALSE	HETLOSS	PASS
659_bTo_pair	PDHA1	23	19343893	19361705	FALSE	1276	0.0763243231691416	59	15827382	20064777	0.308533751035793	5	NA	0.308533751035793	5	NA	4237395	NA	24	14	1	FALSE	AMP (many states)	PASS
659_bTo_pair	PDHA2	4	95840019	95841474	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	PDHB	3	58427630	58433857	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	PDHX	11	34915829	35020591	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	PDIA2	16	283152	287215	FALSE	934	-0.725703643263354	19	47610	287124	0.365165917639896	1	0	0.365165917639896	1	0	239514	1	16	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	PDIA3	15	43746392	43773279	FALSE	902	-0.672637691845835	22	43521582	44676538	0.291335969972972	1	0	0.291335969972972	1	0	1154956	1	21	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	PDIA4	7	149003062	149028641	FALSE	505	0.850081270536524	76	148802335	149005201	0.364342740527346	10	NA	0.364342740527346	10	NA	202866	NA	2	11	0	TRUE	AMP	PASS
659_bTo_pair	PDIA5	3	123067062	123225227	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	19	1	FALSE	GAIN	PASS
659_bTo_pair	PDIA6	2	10783391	10837977	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	PDIK1L	1	26111165	26125543	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	PDILT	16	20359170	20404737	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	PDK1	2	172555373	172608669	FALSE	152	1.86993599386221	100	172555462	172608529	0.364342740527346	24	NA	0.364342740527346	24	NA	53067	NA	1	55	1	FALSE	AMP	PASS
659_bTo_pair	PDK2	17	50094737	50112152	FALSE	1053	-0.561829441831031	26	49646906	50626743	NA	2	NA	NA	2	NA	979837	NA	25	12	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PDK3	23	24465221	24541862	FALSE	1280	-0.105034146595124	53	24465460	24995963	0.273255132087987	4	NA	0.273255132087987	4	NA	530503	NA	3	12	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PDK4	7	95583499	95596491	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	PDLIM1	10	95237572	95291024	FALSE	663	-0.556688707084635	24	94775074	96952170	0.359751661895656	2	0	0.359751661895656	2	0	2177096	2	21	7	0	FALSE	CNLOH	PASS
659_bTo_pair	PDLIM2	8	22578279	22598025	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	13	2	FALSE	HETLOSS	PASS
659_bTo_pair	PDLIM3	4	185500660	185535612	FALSE	305	-0.853036814117495	12	184629284	186555336	0.365165917639896	1	0	0.365165917639896	1	0	1926052	1	22	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	PDLIM4	5	132257671	132273454	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	PDLIM5	4	94451857	94668227	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	21	4	FALSE	DIPLOID	PASS
659_bTo_pair	PDLIM7	5	177483394	177497606	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	PDP1	8	93857807	93926066	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	8	0	FALSE	GAIN	PASS
659_bTo_pair	PDP2	16	66878589	66895754	FALSE	973	-0.642771892390385	26	64948130	66912568	NA	2	NA	NA	2	NA	1964438	NA	17	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PDPK1	16	2537964	2603188	FALSE	943	2.37541833841378	111	2538228	2603227	0.364342740527346	36	NA	0.364342740527346	36	NA	64999	NA	1	31	1	FALSE	AMP	PASS
659_bTo_pair	PDPN	1	13583465	13617957	FALSE	5	-0.657750557858816	22	13225408	13779152	0.291335969972972	1	0	0.291335969972972	1	0	553744	1	12	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	PDPR	16	70113626	70162537	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PDRG1	20	31944342	31952092	FALSE	1201	-0.583226555890856	26	31757461	32331296	NA	2	NA	NA	2	NA	573835	NA	13	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PDS5A	4	39822863	39977956	FALSE	280	-0.191477557443324	47	38829296	41740154	0.365165917639896	3	1	0.365165917639896	3	1	2910858	2	22	33	2	FALSE	GAIN	PASS
659_bTo_pair	PDS5B	13	32586427	32778019	TRUE	830	-0.745621963362667	19	32401848	39788354	0.365165917639896	1	0	0.365165917639896	1	0	7386506	1	30	35	1	FALSE	HETLOSS	PASS
659_bTo_pair	PDSS1	10	26697659	26746798	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	11	0	FALSE	CNLOH	PASS
659_bTo_pair	PDSS2	6	107152557	107459564	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	PDX1	13	27920020	27926231	FALSE	824	-0.820211361281197	14	23365275	27988570	0.365165917639896	1	0	0.365165917639896	1	0	4623295	1	32	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	PDXDC1	16	14974591	15139339	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	50	3	FALSE	DIPLOID	PASS
659_bTo_pair	PDXK	21	43719094	43762307	FALSE	1234	-0.544212636077936	27	41740855	44141314	1	2	1	1	2	1	2400459	1	31	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	PDXP	22	37658727	37666934	FALSE	1263	-0.528184158498335	29	36991204	37967644	NA	2	NA	NA	2	NA	976440	NA	31	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PDYN	20	1978757	1994285	FALSE	1196	0.0145909737502021	56	1551807	2207199	0.365165917639896	4	NA	0.365165917639896	4	NA	655392	NA	7	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PDZD11	23	70286595	70290514	FALSE	1311	0.0481524733197309	56	68048478	70452009	0.365165917639896	4	NA	0.365165917639896	4	NA	2403531	NA	19	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PDZD2	5	31639410	32110931	FALSE	312	-0.206081392785099	47	24487677	35857105	0.365165917639896	3	1	0.365165917639896	3	1	11369428	2	27	46	2	FALSE	GAIN	PASS
659_bTo_pair	PDZD3	11	119185457	119190223	FALSE	728	-0.487905654975058	30	118527582	119195409	1	2	1	1	2	1	667827	1	26	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	PDZD4	23	153802166	153830565	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	15	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	PDZD7	10	101007683	101032295	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	23	1	FALSE	CNLOH	PASS
659_bTo_pair	PDZD8	10	117277274	117375467	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	16	1	FALSE	CNLOH	PASS
659_bTo_pair	PDZD9	16	21983865	22001110	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	PDZK1	1	145670852	145708148	FALSE	44	-0.0508975396039555	55	119911615	146019534	0.328696605851359	4	NA	0.328696605851359	4	NA	26107919	NA	33	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PDZK1IP1	1	47183593	47191044	FALSE	16	-0.485631979032023	30	46175602	48453048	1	2	1	1	2	1	2277446	1	32	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	PDZRN3	3	73382433	73624940	FALSE	232	-0.785224171872638	14	72888305	88156485	0.365165917639896	1	0	0.365165917639896	1	0	15268180	1	18	20	1	FALSE	HETLOSS	PASS
659_bTo_pair	PDZRN4	12	41188448	41574724	FALSE	764	-0.478463991093384	34	40959192	45805435	NA	2	NA	NA	2	NA	4846243	NA	16	20	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PEA15	1	160205337	160215376	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	PEAK1	15	77100656	77420144	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	PEAK3	19	2274622	2282176	FALSE	1120	-0.63588318052236	23	2233887	3062886	0.186356639256811	1	0	0.186356639256811	1	0	828999	1	28	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	PEAR1	1	156893698	156916434	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	24	2	FALSE	DIPLOID	PASS
659_bTo_pair	PEBP1	12	118135858	118145584	FALSE	808	-0.531025796359709	27	115966146	120090026	1	2	1	1	2	1	4123880	1	23	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	PEBP4	8	22713251	23000000	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	PECAM1	17	64319415	64413776	FALSE	1066	-0.447707994366894	34	63941413	64859452	NA	2	NA	NA	2	NA	918039	NA	12	10	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PECR	2	215996329	216082955	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	PEF1	1	31629862	31644896	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	PEG10	7	94656325	94669695	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	PEG3	19	56810077	56840728	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	23	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PELI1	2	64092652	64144454	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	PELI2	14	56117814	56301526	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	PELI3	11	66466327	66477337	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	9	1	FALSE	GAIN	PASS
659_bTo_pair	PELO	5	52787940	52804046	FALSE	319	-0.764156631411702	19	50399919	56556187	0.365165917639896	1	0	0.365165917639896	1	0	6156268	1	28	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	PELP1	17	4669774	4704337	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	PEMT	17	17505563	17591708	FALSE	1014	-0.559544539688918	26	17247059	18028347	NA	2	NA	NA	2	NA	781288	NA	10	8	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PENK	8	56436674	56446734	FALSE	548	-0.313898052002086	43	56168306	58659618	0.192136715055622	3	NA	0.192136715055622	3	NA	2491312	NA	10	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PEPD	19	33386950	33521794	FALSE	1166	0.83138194360177	75	33295903	33391322	0.364342740527346	10	NA	0.364342740527346	10	NA	95419	NA	3	16	1	TRUE	AMP	PASS
659_bTo_pair	PER1	17	8140472	8156506	FALSE	1004	-0.905703364358502	13	8096639	8190110	0.365165917639896	1	0	0.365165917639896	1	0	93471	1	7	26	3	FALSE	HETLOSS	PASS
659_bTo_pair	PER2	2	238244038	238290102	FALSE	190	-0.691419458816616	21	236392006	238848635	0.140309795179477	0	0	0.140309795179477	0	0	2456629	0	22	25	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PER3	1	7784320	7845177	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	24	1	FALSE	DIPLOID	PASS
659_bTo_pair	PERM1	1	975204	982093	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	11	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PERP	6	138088505	138107511	FALSE	429	-0.412609995390511	39	138092232	142443520	NA	2	NA	NA	2	NA	4351288	NA	18	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PES1	22	30576625	30607083	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	15	2	FALSE	CNLOH	PASS
659_bTo_pair	PET100	19	7629737	7631956	FALSE	1130	-0.690953718254595	21	7440128	7870576	0.140309795179477	0	0	0.140309795179477	0	0	430448	0	25	5	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PET117	20	18137873	18143169	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	PEX1	7	92487020	92528531	FALSE	479	-0.448308050861149	30	87602941	92590330	1	2	1	1	2	1	4987389	1	30	27	1	FALSE	DIPLOID	PASS
659_bTo_pair	PEX10	1	2403964	2413797	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	PEX11A	15	89677764	89690783	FALSE	925	-0.863518905667221	13	89317527	90079704	0.365165917639896	1	0	0.365165917639896	1	0	762177	1	14	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	PEX11B	1	145911350	145918837	FALSE	44	-0.0508975396039555	55	119911615	146019534	0.328696605851359	4	NA	0.328696605851359	4	NA	26107919	NA	33	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PEX11G	19	7476875	7497449	FALSE	1130	-0.690953718254595	21	7440128	7870576	0.140309795179477	0	0	0.140309795179477	0	0	430448	0	25	8	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PEX12	17	35574795	35578863	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PEX13	2	61017225	61051990	FALSE	118	-0.436789875977301	34	60942397	61470693	NA	2	NA	NA	2	NA	528296	NA	5	7	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PEX14	1	10472288	10630758	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	PEX16	11	45909669	45918812	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	PEX19	1	160276812	160286348	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	PEX2	8	76980258	77001044	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	4	0	FALSE	GAIN	PASS
659_bTo_pair	PEX26	22	18077920	18131138	FALSE	1240	-0.594689860601271	26	15528179	18606839	NA	2	NA	NA	2	NA	3078660	NA	21	15	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PEX3	6	143450807	143490010	FALSE	431	-0.504239059693729	30	143136912	149638436	1	2	1	1	2	1	6501524	1	29	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	PEX5	12	7188685	7218574	FALSE	745	-0.243574834353832	44	6965649	8175835	0.345317016959666	3	1	0.345317016959666	3	1	1210186	2	26	18	0	FALSE	GAIN	PASS
659_bTo_pair	PEX5L	3	179794958	180037053	FALSE	253	-0.302573270656947	43	179243074	180989661	0.192136715055622	3	NA	0.192136715055622	3	NA	1746587	NA	13	18	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PEX6	6	42963870	42979220	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	20	3	FALSE	DIPLOID	PASS
659_bTo_pair	PEX7	6	136822564	136913937	FALSE	427	-0.614116824618693	26	135285680	137161691	NA	2	NA	NA	2	NA	1876011	NA	10	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PF4	4	73981077	73982124	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	PF4V1	4	73853189	73854155	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	PFAS	17	8247618	8270491	FALSE	1005	-0.533729334585785	29	8204923	8370291	NA	2	NA	NA	2	NA	165368	NA	9	30	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PFDN1	5	140245039	140303121	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PFDN2	1	161100556	161118111	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	PFDN4	20	54207847	54228052	FALSE	1220	-1.01213938040689	8	53953522	56248828	0.342391532111247	0	0	0.342391532111247	0	0	2295306	0	6	4	0	FALSE	HOMDEL	PASS
659_bTo_pair	PFDN5	12	53295291	53299450	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	PFDN6	6	33289302	33298401	FALSE	389	-0.565050845620731	23	33163789	33316917	0.186356639256811	1	0	0.186356639256811	1	0	153128	1	13	18	2	FALSE	HETLOSS	PASS
659_bTo_pair	PFKFB1	23	54932961	54998534	FALSE	1303	0.0232492223836125	56	53426353	57488811	0.365165917639896	4	NA	0.365165917639896	4	NA	4062458	NA	32	15	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PFKFB2	1	207034366	207081024	FALSE	71	-0.474443448890496	34	206798940	207049323	NA	2	NA	NA	2	NA	250383	NA	9	21	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	PFKFB3	10	6144934	6254644	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	18	0	FALSE	CNLOH	PASS
659_bTo_pair	PFKFB4	3	48517684	48562015	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	PFKL	21	44300051	44327376	FALSE	1236	-0.500794339727727	30	44229616	44592452	1	2	1	1	2	1	362836	1	14	26	0	FALSE	DIPLOID	PASS
659_bTo_pair	PFKM	12	48105139	48146404	FALSE	768	-0.491963868457131	34	48045387	49018767	NA	2	NA	NA	2	NA	973380	NA	28	28	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PFKP	10	3066333	3137712	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	25	4	FALSE	CNLOH	PASS
659_bTo_pair	PFN1	17	4945652	4949061	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	PFN2	3	149964904	150050788	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	9	0	FALSE	GAIN	PASS
659_bTo_pair	PFN3	5	177400107	177400636	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	PFN4	2	24115371	24123477	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PGA3	11	61203307	61213098	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	5	0	FALSE	GAIN	PASS
659_bTo_pair	PGA4	11	61222216	61231927	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	1	0	FALSE	GAIN	PASS
659_bTo_pair	PGA5	11	61241042	61251448	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	5	0	FALSE	GAIN	PASS
659_bTo_pair	PGAM1	10	97426160	97433441	FALSE	664	-0.371799025630062	36	96955124	97864220	0.365165917639896	2	0	0.365165917639896	2	0	909096	2	23	6	0	FALSE	CNLOH	PASS
659_bTo_pair	PGAM2	7	44062727	44065587	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	4	0	FALSE	GAIN	PASS
659_bTo_pair	PGAM4	23	77968874	77969638	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	3	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	PGAM5	12	132710819	132722734	FALSE	818	-0.324030199616913	43	132687628	133234369	0.192136715055622	3	NA	0.192136715055622	3	NA	546741	NA	14	8	3	FALSE	GAIN (many states)	PASS
659_bTo_pair	PGAP1	2	196833004	196927796	FALSE	161	-0.46057869782823	30	190057617	197310624	1	2	1	1	2	1	7253007	1	23	27	0	FALSE	DIPLOID	PASS
659_bTo_pair	PGAP2	11	3797724	3826371	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	PGAP3	17	39671122	39696797	FALSE	1026	-0.886931394907893	13	39564387	39685917	0.365165917639896	1	0	0.365165917639896	1	0	121530	1	7	13	2	TRUE	HETLOSS	PASS
659_bTo_pair	PGBD1	6	28281572	28302549	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	13	2	FALSE	DIPLOID	PASS
659_bTo_pair	PGBD2	1	248906196	248919946	FALSE	88	-0.491817591117162	34	248559031	248918142	NA	2	NA	NA	2	NA	359111	NA	12	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PGBD4	15	34102073	34108684	FALSE	888	-0.723950250184678	19	32774281	34342000	0.365165917639896	1	0	0.365165917639896	1	0	1567719	1	10	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	PGBD5	1	230314482	230426371	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	PGC	6	41736711	41754109	FALSE	399	-0.575359055127692	26	41736131	41931766	NA	2	NA	NA	2	NA	195635	NA	9	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PGD	1	10398592	10420144	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	PGF	14	74941834	74955784	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	PGGHG	11	289135	296107	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	16	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PGGT1B	5	115204012	115262872	FALSE	331	-0.706980197323045	20	112861366	122075379	0.365165917639896	1	0	0.365165917639896	1	0	9214013	1	31	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	PGK1	23	77910739	78129296	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	42	2	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	PGK2	6	49785651	49787307	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	PGLS	19	17511629	17521288	FALSE	1155	-0.249305971018279	46	17273895	17821522	0.298322295679939	3	NA	0.298322295679939	3	NA	547627	NA	25	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PGLYRP1	19	46019153	46023065	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	4	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PGLYRP2	19	15468645	15498956	FALSE	1151	-0.245775583538201	44	15355095	15913929	0.345317016959666	3	1	0.345317016959666	3	1	558834	2	15	11	2	FALSE	GAIN	PASS
659_bTo_pair	PGLYRP3	1	153297862	153310718	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	PGLYRP4	1	153330120	153348840	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	PGM1	1	63593276	63660245	FALSE	21	-0.414935064922519	39	59321678	64830856	NA	2	NA	NA	2	NA	5509178	NA	22	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PGM2	4	37826633	37862937	FALSE	278	-0.217595572850614	44	20704713	38137253	0.345317016959666	3	1	0.345317016959666	3	1	17432540	2	29	14	1	FALSE	GAIN	PASS
659_bTo_pair	PGM2L1	11	74330318	74398473	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	14	2	FALSE	GAIN	PASS
659_bTo_pair	PGM3	6	83161150	83193936	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	PGM5	9	68328308	68531061	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	PGP	16	2211997	2214807	FALSE	942	-0.803500535593988	16	2178660	2530995	0.365165917639896	1	0	0.365165917639896	1	0	352335	1	18	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	PGPEP1	19	18340587	18369950	FALSE	1159	-0.165917001507678	49	18177228	19138502	0.365165917639896	3	1	0.365165917639896	3	1	961274	2	36	6	0	FALSE	GAIN	PASS
659_bTo_pair	PGPEP1L	15	98968230	99007795	FALSE	932	1.54042056787293	91	98648758	98968564	0.364342740527346	18	NA	0.364342740527346	18	NA	319806	NA	2	5	0	TRUE	AMP	PASS
659_bTo_pair	PGR	11	101029624	101130524	FALSE	718	1.76971729663189	98	101029628	101129770	0.364342740527346	22	NA	0.364342740527346	22	NA	100142	NA	1	52	10	FALSE	AMP	PASS
659_bTo_pair	PGRMC1	23	119236245	119244466	FALSE	1326	0.081501992784242	59	111246621	119452040	0.308533751035793	5	NA	0.308533751035793	5	NA	8205419	NA	28	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	PGRMC2	4	128269237	128288829	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	PGS1	17	78378640	78425114	FALSE	1080	-0.537824093701074	27	76741010	78870935	1	2	1	1	2	1	2129925	1	20	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	PHACTR1	6	12716805	13290484	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	PHACTR2	6	143536845	143831185	FALSE	431	-0.504239059693729	30	143136912	149638436	1	2	1	1	2	1	6501524	1	29	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	PHACTR3	20	59577509	59847711	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	PHACTR4	1	28369582	28500369	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	PHAX	5	126600268	126627252	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	PHB	17	49404049	49414905	FALSE	1051	-0.636429062465303	26	48785033	49576193	NA	2	NA	NA	2	NA	791160	NA	15	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PHB2	12	6965327	6970825	FALSE	745	-0.243574834353832	44	6965649	8175835	0.345317016959666	3	1	0.345317016959666	3	1	1210186	2	26	10	0	FALSE	GAIN	PASS
659_bTo_pair	PHC1	12	8913896	8941467	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	18	5	FALSE	DIPLOID	PASS
659_bTo_pair	PHC2	1	33323623	33431052	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	PHC3	3	170086732	170181749	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	20	0	FALSE	GAIN	PASS
659_bTo_pair	PHETA1	12	111360651	111369121	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	PHETA2	22	42074251	42079441	FALSE	1269	-0.443951758803067	34	41205309	42514754	NA	2	NA	NA	2	NA	1309445	NA	31	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PHEX	23	22032441	22251310	FALSE	1278	-0.021616497728569	55	20155391	23935235	0.328696605851359	4	NA	0.328696605851359	4	NA	3779844	NA	16	23	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PHF1	6	33410399	33416453	FALSE	391	-0.499783837646083	34	33391964	35241176	NA	2	NA	NA	2	NA	1849212	NA	26	15	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PHF10	6	169703905	169725566	FALSE	449	-0.520973998932362	27	167374374	170584540	1	2	1	1	2	1	3210166	1	18	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	PHF11	13	49495610	49528987	FALSE	835	-0.766581964775609	19	48490223	50953919	0.365165917639896	1	0	0.365165917639896	1	0	2463696	1	18	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	PHF12	17	28905250	28951771	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	PHF13	1	6613685	6624033	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	PHF14	7	10973336	11169630	FALSE	456	-0.240618790532325	45	6028682	12688782	0.279823559258657	3	0	0.279823559258657	3	0	6660100	3	32	20	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	PHF19	9	120855652	120894896	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	17	3	FALSE	DIPLOID	PASS
659_bTo_pair	PHF2	9	93576407	93679587	FALSE	606	-0.547644280946133	27	91214370	95094057	1	2	1	1	2	1	3879687	1	31	25	0	FALSE	DIPLOID	PASS
659_bTo_pair	PHF20	20	35771974	35950381	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	20	1	FALSE	DIPLOID	PASS
659_bTo_pair	PHF20L1	8	132775358	132848807	FALSE	565	-0.282741903777565	44	129748604	134610527	0.345317016959666	3	1	0.345317016959666	3	1	4861923	2	18	25	3	FALSE	GAIN	PASS
659_bTo_pair	PHF21A	11	45929323	46121178	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	20	1	FALSE	DIPLOID	PASS
659_bTo_pair	PHF21B	22	44881162	45009999	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	17	0	FALSE	CNLOH	PASS
659_bTo_pair	PHF23	17	7235028	7239722	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	PHF24	9	34957608	34982544	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	8	0	FALSE	CNLOH	PASS
659_bTo_pair	PHF3	6	63635820	63779336	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	41	0	FALSE	DIPLOID	PASS
659_bTo_pair	PHF5A	22	41459717	41468725	FALSE	1269	-0.443951758803067	34	41205309	42514754	NA	2	NA	NA	2	NA	1309445	NA	31	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PHF6	23	134373253	134428791	TRUE	1336	2.33973819458707	110	134245172	134429146	0.364342740527346	35	NA	0.364342740527346	35	NA	183974	NA	2	41	1	FALSE	AMP	PASS
659_bTo_pair	PHF7	3	52410657	52423641	FALSE	223	0.895331456142884	76	52400316	52412349	0.364342740527346	11	NA	0.364342740527346	11	NA	12033	NA	3	13	0	TRUE	AMP	PASS
659_bTo_pair	PHF8	23	53936676	54048958	FALSE	1303	0.0232492223836125	56	53426353	57488811	0.365165917639896	4	NA	0.365165917639896	4	NA	4062458	NA	32	27	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PHGDH	1	119648411	119744226	FALSE	43	-0.890933866500247	13	117628427	119906570	0.365165917639896	1	0	0.365165917639896	1	0	2278143	1	13	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	PHGR1	15	40351033	40356434	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	PHIP	6	78935867	79078236	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	43	4	FALSE	DIPLOID	PASS
659_bTo_pair	PHKA1	23	72578814	72714319	FALSE	1317	0.217996879888221	62	71533297	76176924	0.364342740527346	5	NA	0.364342740527346	5	NA	4643627	NA	35	32	0	FALSE	AMP (many states)	PASS
659_bTo_pair	PHKA2	23	18892300	18984598	FALSE	1276	0.0763243231691416	59	15827382	20064777	0.308533751035793	5	NA	0.308533751035793	5	NA	4237395	NA	24	35	1	FALSE	AMP (many states)	PASS
659_bTo_pair	PHKB	16	47461123	47701523	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	33	1	FALSE	DIPLOID	PASS
659_bTo_pair	PHKG1	7	56080283	56092996	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	PHKG2	16	30748270	30761176	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	PHLDA1	12	76025447	76033932	FALSE	792	-0.349776929755415	43	71610399	76348235	0.192136715055622	3	NA	0.192136715055622	3	NA	4737836	NA	18	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PHLDA2	11	2928273	2929455	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	PHLDA3	1	201464383	201469237	FALSE	61	-0.50531963543648	34	201209721	201898337	NA	2	NA	NA	2	NA	688616	NA	11	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PHLDB1	11	118606440	118658038	FALSE	728	-0.487905654975058	30	118527582	119195409	1	2	1	1	2	1	667827	1	26	30	2	FALSE	DIPLOID	PASS
659_bTo_pair	PHLDB2	3	111732497	111976517	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	25	0	FALSE	GAIN	PASS
659_bTo_pair	PHLDB3	19	43474954	43504935	FALSE	1179	-0.582084941516902	26	42297317	43535595	NA	2	NA	NA	2	NA	1238278	NA	25	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PHLPP1	18	62715450	62980433	FALSE	1109	-0.86662286323735	13	60372339	62975524	0.365165917639896	1	0	0.365165917639896	1	0	2603185	1	8	27	0	TRUE	HETLOSS	PASS
659_bTo_pair	PHLPP2	16	71637835	71724701	FALSE	983	-0.428709389755029	30	71178941	72171154	1	2	1	1	2	1	992213	1	22	26	0	FALSE	DIPLOID	PASS
659_bTo_pair	PHOSPHO1	17	49223362	49230766	FALSE	1051	-0.636429062465303	26	48785033	49576193	NA	2	NA	NA	2	NA	791160	NA	15	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PHOSPHO2	2	169694454	169701708	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	PHOX2A	11	72239077	72245664	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	4	0	FALSE	GAIN	PASS
659_bTo_pair	PHOX2B	4	41744082	41748970	TRUE	281	1.36503846120674	87	41741220	41751742	0.364342740527346	16	NA	0.364342740527346	16	NA	10522	NA	1	13	2	FALSE	AMP	PASS
659_bTo_pair	PHPT1	9	136848724	136851027	FALSE	631	-1.04738377038343	8	136673897	136866235	0.342391532111247	0	0	0.342391532111247	0	0	192338	0	15	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PHRF1	11	576486	612222	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	29	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PHTF1	1	113696831	113759489	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	19	1	FALSE	HETLOSS	PASS
659_bTo_pair	PHTF2	7	77798792	77957503	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	PHYH	10	13277796	13302412	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	9	0	FALSE	CNLOH	PASS
659_bTo_pair	PHYHD1	9	128920895	128942041	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	PHYHIP	8	22219704	22232341	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	PHYHIPL	10	59176590	59247774	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	9	0	FALSE	CNLOH	PASS
659_bTo_pair	PHYKPL	5	178208497	178232791	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	PI15	8	74824534	74855029	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	6	0	FALSE	GAIN	PASS
659_bTo_pair	PI16	6	36948263	36964837	FALSE	395	-0.486049210799182	34	36704239	37028105	NA	2	NA	NA	2	NA	323866	NA	7	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PI3	20	45174876	45176544	FALSE	1211	-0.249905145449482	46	45110461	45330545	0.298322295679939	3	NA	0.298322295679939	3	NA	220084	NA	9	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PI4K2A	10	97640686	97676434	FALSE	664	-0.371799025630062	36	96955124	97864220	0.365165917639896	2	0	0.365165917639896	2	0	909096	2	23	10	0	FALSE	CNLOH	PASS
659_bTo_pair	PI4K2B	4	25233975	25279092	FALSE	278	-0.217595572850614	44	20704713	38137253	0.345317016959666	3	1	0.345317016959666	3	1	17432540	2	29	11	0	FALSE	GAIN	PASS
659_bTo_pair	PI4KA	22	20707691	20859417	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	67	1	FALSE	CNLOH	PASS
659_bTo_pair	PI4KB	1	151291797	151327715	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	PIANP	12	6693792	6700800	FALSE	743	-0.145896859645485	51	6620180	6938488	0.365165917639896	3	NA	0.365165917639896	3	NA	318308	NA	20	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PIAS1	15	68054179	68198603	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	PIAS2	18	46803224	46920160	FALSE	1100	-0.758401070483502	19	45624783	47803983	0.365165917639896	1	0	0.365165917639896	1	0	2179200	1	22	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	PIAS3	1	145848522	145859836	FALSE	44	-0.0508975396039555	55	119911615	146019534	0.328696605851359	4	NA	0.328696605851359	4	NA	26107919	NA	33	13	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PIAS4	19	4007646	4039386	FALSE	1122	-0.653400653967241	21	3157829	4037863	0.140309795179477	0	0	0.140309795179477	0	0	880034	0	27	13	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PIBF1	13	72782059	73016461	FALSE	837	1.888694808087	101	72752340	72782099	0.364342740527346	24	NA	0.364342740527346	24	NA	29759	NA	3	20	3	TRUE	AMP	PASS
659_bTo_pair	PICALM	11	85957684	86069882	FALSE	712	-0.188800010767045	48	77590086	86068715	0.365165917639896	3	NA	0.365165917639896	3	NA	8478629	NA	30	21	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	PICK1	22	38056311	38075701	FALSE	1265	-0.53141020507802	29	38041114	39152464	NA	2	NA	NA	2	NA	1111350	NA	31	13	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PID1	2	228850526	229271285	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	PIDD1	11	799179	809753	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	18	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PIEZO1	16	88715338	88785220	FALSE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	51	11	FALSE	HETLOSS	PASS
659_bTo_pair	PIEZO2	18	10666483	11148762	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	55	7	FALSE	GAIN	PASS
659_bTo_pair	PIF1	15	64815632	64825668	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	PIFO	1	111346288	111353013	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	PIGA	23	15319451	15335580	TRUE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	10	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	PIGB	15	55318960	55355648	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	12	2	FALSE	HETLOSS	PASS
659_bTo_pair	PIGBOS1	15	55317184	55319161	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	1	0	FALSE	HETLOSS	PASS
659_bTo_pair	PIGC	1	172370189	172444086	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	PIGF	2	46580937	46617119	FALSE	108	-0.751130758275331	19	46479657	47176488	0.365165917639896	1	0	0.365165917639896	1	0	696831	1	11	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	PIGG	4	499210	540196	FALSE	272	-0.300029378244858	40	85877	1745020	0.308149309490068	3	1	0.308149309490068	3	1	1659143	2	29	20	0	FALSE	GAIN	PASS
659_bTo_pair	PIGH	14	67581955	67600287	FALSE	862	-0.496151350288089	31	65561584	67816009	1	2	1	1	2	1	2254425	1	17	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	PIGK	1	77088990	77219430	FALSE	25	-0.394411030612058	39	74026891	77942032	NA	2	NA	NA	2	NA	3915141	NA	22	11	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PIGL	17	16217191	16351797	FALSE	1011	0.748589175050626	74	16034943	16223222	0.364342740527346	9	NA	0.364342740527346	9	NA	188279	NA	3	12	1	TRUE	INDETERMINATE	PASS
659_bTo_pair	PIGM	1	160024953	160031991	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	PIGN	18	61905255	62187118	FALSE	1109	-0.86662286323735	13	60372339	62975524	0.365165917639896	1	0	0.365165917639896	1	0	2603185	1	8	29	2	FALSE	HETLOSS	PASS
659_bTo_pair	PIGO	9	35088688	35096601	FALSE	589	-0.372578422434124	39	35089175	35107712	NA	2	NA	NA	2	NA	18537	NA	3	17	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PIGP	21	37059170	37073170	FALSE	1228	-0.430637379115077	30	36009679	38367602	1	2	1	1	2	1	2357923	1	17	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	PIGQ	16	566995	584136	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	17	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PIGR	1	206928518	206946466	FALSE	71	-0.474443448890496	34	206798940	207049323	NA	2	NA	NA	2	NA	250383	NA	9	15	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PIGS	17	28553383	28571872	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	PIGT	20	45416067	45456934	FALSE	1213	-0.238233999759016	46	45348351	45515632	0.298322295679939	3	NA	0.298322295679939	3	NA	167281	NA	8	15	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PIGU	20	34560542	34698790	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	PIGV	1	26787472	26798398	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	PIGW	17	36535020	36539310	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PIGX	3	196639775	196736007	FALSE	271	-0.194588974812627	47	196198492	198169864	0.365165917639896	3	1	0.365165917639896	3	1	1971372	2	29	19	2	FALSE	GAIN	PASS
659_bTo_pair	PIGY	4	88521573	88521789	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	PIGZ	3	196946343	196969060	FALSE	271	-0.194588974812627	47	196198492	198169864	0.365165917639896	3	1	0.365165917639896	3	1	1971372	2	29	8	1	FALSE	GAIN	PASS
659_bTo_pair	PIH1D1	19	49446298	49453497	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	PIH1D2	11	112064010	112074274	FALSE	724	-0.507750808576719	29	111913677	112086663	NA	2	NA	NA	2	NA	172986	NA	9	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PIH1D3	23	107206632	107244243	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	6	0	FALSE	AMP (many states)	PASS
659_bTo_pair	PIK3AP1	10	96593312	96720514	FALSE	663	-0.556688707084635	24	94775074	96952170	0.359751661895656	2	0	0.359751661895656	2	0	2177096	2	21	19	1	FALSE	CNLOH	PASS
659_bTo_pair	PIK3C2A	11	17077730	17207983	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	36	1	FALSE	DIPLOID	PASS
659_bTo_pair	PIK3C2B	1	204422628	204494724	FALSE	65	0.346765491902278	65	204411239	204617919	0.364342740527346	6	NA	0.364342740527346	6	NA	206680	NA	4	51	3	FALSE	AMP (many states)	PASS
659_bTo_pair	PIK3C2G	12	18247614	18648416	FALSE	754	1.19979156079548	84	18262774	18648442	0.364342740527346	14	NA	0.364342740527346	14	NA	385668	NA	2	40	2	FALSE	AMP	PASS
659_bTo_pair	PIK3C3	18	41955206	42087830	FALSE	1097	1.45588035775425	90	41955234	42085511	0.364342740527346	17	NA	0.364342740527346	17	NA	130277	NA	1	56	7	TRUE	AMP	PASS
659_bTo_pair	PIK3CA	3	179148114	179240093	FALSE	252	2.30320976413867	110	179148454	179240127	0.364342740527346	34	NA	0.364342740527346	34	NA	91673	NA	2	57	2	FALSE	AMP	PASS
659_bTo_pair	PIK3CB	3	138652699	138834938	FALSE	245	0.794201723555962	75	138633038	139044349	0.364342740527346	10	NA	0.364342740527346	10	NA	411311	NA	8	34	1	FALSE	AMP	PASS
659_bTo_pair	PIK3CD	1	9651732	9729114	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	36	1	FALSE	DIPLOID	PASS
659_bTo_pair	PIK3CG	7	106865278	106907145	FALSE	487	1.90667166698194	101	106248413	107045195	0.364342740527346	25	NA	0.364342740527346	25	NA	796782	NA	4	28	4	FALSE	AMP	PASS
659_bTo_pair	PIK3IP1	22	31281593	31292534	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	6	0	FALSE	CNLOH	PASS
659_bTo_pair	PIK3R1	5	68215720	68301821	TRUE	324	1.26964949744884	86	68215878	68306848	0.364342740527346	15	NA	0.364342740527346	15	NA	90970	NA	1	60	8	FALSE	AMP	PASS
659_bTo_pair	PIK3R2	19	18153118	18170540	TRUE	1158	2.03027191983043	104	18153185	18175698	0.364342740527346	27	NA	0.364342740527346	27	NA	22513	NA	3	26	0	FALSE	AMP	PASS
659_bTo_pair	PIK3R3	1	46040140	46133036	TRUE	15	1.20617486454781	84	46040222	46138125	0.364342740527346	14	NA	0.364342740527346	14	NA	97903	NA	2	34	0	FALSE	AMP	PASS
659_bTo_pair	PIK3R4	3	130678935	130746829	FALSE	242	-0.32037413513609	40	130560427	134790274	0.308149309490068	3	1	0.308149309490068	3	1	4229847	2	29	23	2	FALSE	GAIN	PASS
659_bTo_pair	PIK3R5	17	8878911	8965712	FALSE	1006	-0.894220729735546	12	8370429	10825247	0.365165917639896	1	0	0.365165917639896	1	0	2454818	1	31	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	PIK3R6	17	8802723	8867677	FALSE	1006	-0.894220729735546	12	8370429	10825247	0.365165917639896	1	0	0.365165917639896	1	0	2454818	1	31	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	PIKFYVE	2	208266267	208358751	FALSE	169	1.22189769320275	84	208236467	208271150	0.364342740527346	14	NA	0.364342740527346	14	NA	34683	NA	2	48	0	TRUE	AMP	PASS
659_bTo_pair	PILRA	7	100367530	100400099	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	PILRB	7	100352176	100367733	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	PIM1	6	37170203	37175426	FALSE	396	2.33820798285988	110	37028192	37175209	0.364342740527346	35	NA	0.364342740527346	35	NA	147017	NA	2	12	1	FALSE	AMP	PASS
659_bTo_pair	PIM2	23	48913182	48919024	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	7	0	FALSE	AMP (many states)	PASS
659_bTo_pair	PIM3	22	49960513	49964080	FALSE	1271	-0.350898193716427	41	45922979	50285791	0.284729887459054	3	0	0.284729887459054	3	0	4362812	3	30	7	1	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	PIMREG	17	6444415	6451469	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	PIN1	19	9835257	9849682	FALSE	1136	-0.657304673205362	21	8981156	10119920	0.140309795179477	0	0	0.140309795179477	0	0	1138764	0	32	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PIN4	23	72181353	72302926	FALSE	1317	0.217996879888221	62	71533297	76176924	0.364342740527346	5	NA	0.364342740527346	5	NA	4643627	NA	35	30	4	FALSE	AMP (many states)	PASS
659_bTo_pair	PINK1	1	20633455	20651511	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	PINLYP	19	43576800	43583964	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	PINX1	8	10725399	10839884	FALSE	516	-0.746159577374248	19	10611830	11564127	0.365165917639896	1	0	0.365165917639896	1	0	952297	1	9	14	1	FALSE	HETLOSS	PASS
659_bTo_pair	PIP	7	143132077	143139746	FALSE	503	-0.495530614890199	34	143026241	143572680	NA	2	NA	NA	2	NA	546439	NA	15	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PIP4K2A	10	22534849	22714555	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	11	0	FALSE	CNLOH	PASS
659_bTo_pair	PIP4K2B	17	38765689	38800126	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	11	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PIP4K2C	12	57591174	57603418	FALSE	782	-0.458497547164839	34	57472671	57623111	NA	2	NA	NA	2	NA	150440	NA	11	11	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PIP4P1	14	20457719	20461612	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	PIP4P2	8	90993796	91041064	FALSE	557	-0.436164323203642	34	90006291	91395139	NA	2	NA	NA	2	NA	1388848	NA	9	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PIP5K1A	1	151197949	151249536	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	PIP5K1B	9	68705414	69009176	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	18	2	FALSE	DIPLOID	PASS
659_bTo_pair	PIP5K1C	19	3630183	3700479	FALSE	1122	-0.653400653967241	21	3157829	4037863	0.140309795179477	0	0	0.140309795179477	0	0	880034	0	27	21	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PIP5KL1	9	127920879	127930797	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	PIPOX	17	28950513	29057220	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	30	2	FALSE	DIPLOID	PASS
659_bTo_pair	PIR	23	15384799	15493564	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	9	1	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	PIRT	17	10822475	10838445	FALSE	1006	-0.894220729735546	12	8370429	10825247	0.365165917639896	1	0	0.365165917639896	1	0	2454818	1	31	2	0	TRUE	HETLOSS	PASS
659_bTo_pair	PISD	22	31618491	31662432	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	12	0	FALSE	CNLOH	PASS
659_bTo_pair	PITHD1	1	23778405	23788232	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	PITPNA	17	1517718	1562816	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	PITPNB	22	27851669	27920134	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	12	0	FALSE	CNLOH	PASS
659_bTo_pair	PITPNC1	17	67377281	67697261	FALSE	1070	-0.476939588153593	30	65635933	68457397	1	2	1	1	2	1	2821464	1	18	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	PITPNM1	11	67491768	67506263	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	24	0	FALSE	GAIN	PASS
659_bTo_pair	PITPNM2	12	122983480	123150015	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	29	0	FALSE	DIPLOID	PASS
659_bTo_pair	PITPNM3	17	6451264	6556494	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	24	1	FALSE	HETLOSS	PASS
659_bTo_pair	PITRM1	10	3137728	3172841	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	28	6	FALSE	CNLOH	PASS
659_bTo_pair	PITX1	5	135027735	135034813	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	PITX2	4	110617423	110642123	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	PITX3	10	102230186	102241474	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	5	1	FALSE	CNLOH	PASS
659_bTo_pair	PIWIL1	12	130337887	130372637	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	PIWIL2	8	22275297	22357563	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	PIWIL3	22	24719034	24774720	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	20	1	FALSE	CNLOH	PASS
659_bTo_pair	PIWIL4	11	94543840	94621421	FALSE	717	-0.427991611956568	34	94512673	100992623	NA	2	NA	NA	2	NA	6479950	NA	19	27	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PJA1	23	69160851	69165793	FALSE	1311	0.0481524733197309	56	68048478	70452009	0.365165917639896	4	NA	0.365165917639896	4	NA	2403531	NA	19	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PJA2	5	109334709	109409994	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	13	2	FALSE	HETLOSS	PASS
659_bTo_pair	PJVK	2	178451346	178461409	FALSE	155	-0.524315670340053	27	177420364	181062892	1	2	1	1	2	1	3642528	1	16	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	PKD1	16	2088710	2135898	FALSE	939	1.0597239568491	81	2039996	2089975	0.364342740527346	12	NA	0.364342740527346	12	NA	49979	NA	3	78	1	TRUE	AMP	PASS
659_bTo_pair	PKD1L1	7	47740202	47948491	FALSE	464	-0.323591849229323	42	45157835	48245556	0.189552622934988	3	0	0.189552622934988	3	0	3087721	3	12	67	8	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	PKD1L3	16	71929538	71999978	FALSE	983	-0.428709389755029	30	71178941	72171154	1	2	1	1	2	1	992213	1	22	32	6	FALSE	DIPLOID	PASS
659_bTo_pair	PKD2	4	88007668	88077777	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	18	1	FALSE	DIPLOID	PASS
659_bTo_pair	PKD2L1	10	100288154	100330486	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	18	2	FALSE	CNLOH	PASS
659_bTo_pair	PKD2L2	5	137887968	137942747	FALSE	336	-0.752536733071469	19	135941639	138575278	0.365165917639896	1	0	0.365165917639896	1	0	2633639	1	24	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	PKDCC	2	42048020	42058528	FALSE	104	-0.491151156674762	34	39178660	42057603	NA	2	NA	NA	2	NA	2878943	NA	7	10	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PKDREJ	22	46255663	46263355	FALSE	1271	-0.350898193716427	41	45922979	50285791	0.284729887459054	3	0	0.284729887459054	3	0	4362812	3	30	27	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	PKHD1	6	51615300	52087625	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	85	10	FALSE	DIPLOID	PASS
659_bTo_pair	PKHD1L1	8	109362477	109530330	FALSE	561	-0.210477706860293	47	102652438	116770243	0.365165917639896	3	1	0.365165917639896	3	1	14117805	2	32	91	7	FALSE	GAIN	PASS
659_bTo_pair	PKIA	8	78516139	78605267	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	2	0	FALSE	GAIN	PASS
659_bTo_pair	PKIB	6	122471917	122726373	FALSE	421	-0.534093125771784	29	117482879	126348569	NA	2	NA	NA	2	NA	8865690	NA	29	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PKIG	20	44531785	44624247	FALSE	1210	-0.476296426145969	34	43513997	45110019	NA	2	NA	NA	2	NA	1596022	NA	26	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PKLR	1	155289293	155301438	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	PKM	15	72199029	72231822	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	PKMYT1	16	2968024	2980539	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	16	1	FALSE	HETLOSS	PASS
659_bTo_pair	PKN1	19	14433053	14471867	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	26	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	PKN2	1	88684222	88836255	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	23	3	FALSE	DIPLOID	PASS
659_bTo_pair	PKN3	9	128702523	128720918	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	23	1	FALSE	HETLOSS	PASS
659_bTo_pair	PKNOX1	21	42974510	43033931	FALSE	1234	-0.544212636077936	27	41740855	44141314	1	2	1	1	2	1	2400459	1	31	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	PKNOX2	11	125164687	125433389	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	PKP1	1	201283452	201332993	FALSE	61	-0.50531963543648	34	201209721	201898337	NA	2	NA	NA	2	NA	688616	NA	11	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PKP2	12	32790745	32896840	FALSE	760	-0.171000692864655	50	31089058	38321207	0.218007130395584	4	2	0.218007130395584	4	2	7232149	2	15	16	1	FALSE	TETRAPLOID	PASS
659_bTo_pair	PKP3	11	392614	404908	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	17	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PKP4	2	158456964	158682879	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	24	0	FALSE	DIPLOID	PASS
659_bTo_pair	PLA1A	3	119597842	119629811	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	12	2	FALSE	GAIN	PASS
659_bTo_pair	PLA2G10	16	14672545	14694669	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	PLA2G12A	4	109709989	109730077	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	PLA2G12B	10	72935170	72954778	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	4	0	FALSE	CNLOH	PASS
659_bTo_pair	PLA2G15	16	68245304	68261062	FALSE	979	-0.429457644119204	34	67645299	68698317	NA	2	NA	NA	2	NA	1053018	NA	33	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PLA2G16	11	63573195	63616883	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PLA2G1B	12	120322111	120327789	FALSE	810	-0.438737881374958	34	120127967	120903912	NA	2	NA	NA	2	NA	775945	NA	20	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PLA2G2A	1	19975431	19980416	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	PLA2G2C	1	20161253	20177424	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	PLA2G2D	1	20111939	20119566	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	PLA2G2E	1	19920009	19923617	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	PLA2G2F	1	20139326	20150386	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	PLA2G3	22	31134809	31140607	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	10	3	FALSE	CNLOH	PASS
659_bTo_pair	PLA2G4A	1	186828953	186988981	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	19	1	FALSE	DIPLOID	PASS
659_bTo_pair	PLA2G4B	15	41837775	41848147	FALSE	896	-0.768052081406389	19	41775359	41841304	0.365165917639896	1	0	0.365165917639896	1	0	65945	1	4	21	2	TRUE	HETLOSS	PASS
659_bTo_pair	PLA2G4C	19	48047843	48110817	FALSE	1187	-0.64296711085636	26	47021158	48297657	NA	2	NA	NA	2	NA	1276499	NA	31	17	4	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PLA2G4D	15	42067009	42094554	FALSE	897	-0.755497767970361	19	41841591	42081025	0.365165917639896	1	0	0.365165917639896	1	0	239434	1	6	22	4	TRUE	HETLOSS	PASS
659_bTo_pair	PLA2G4E	15	41981582	42051190	FALSE	897	-0.755497767970361	19	41841591	42081025	0.365165917639896	1	0	0.365165917639896	1	0	239434	1	6	20	2	FALSE	HETLOSS	PASS
659_bTo_pair	PLA2G4F	15	42139034	42156636	FALSE	898	-0.892191685906218	12	42081573	42681446	0.365165917639896	1	0	0.365165917639896	1	0	599873	1	13	21	4	FALSE	HETLOSS	PASS
659_bTo_pair	PLA2G5	1	20028179	20091190	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	PLA2G6	22	38111495	38205690	FALSE	1265	-0.53141020507802	29	38041114	39152464	NA	2	NA	NA	2	NA	1111350	NA	31	23	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PLA2G7	6	46704201	46735693	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	PLA2R1	2	159932006	160062610	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	31	1	FALSE	DIPLOID	PASS
659_bTo_pair	PLAA	9	26904083	26947463	FALSE	585	-0.464842894155678	32	22447079	32572950	0.365165917639896	2	0	0.365165917639896	2	0	10125871	2	19	17	0	FALSE	CNLOH	PASS
659_bTo_pair	PLAC1	23	134565838	134764322	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PLAC8	4	83090048	83137075	FALSE	289	-0.397475195823872	39	80335777	83458331	NA	2	NA	NA	2	NA	3122554	NA	19	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PLAC8L1	5	146084386	146104369	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	PLAC9	10	80131682	80145359	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	4	0	FALSE	CNLOH	PASS
659_bTo_pair	PLAG1	8	56160904	56211324	FALSE	547	0.0601932906587055	59	56069824	56168120	0.308533751035793	5	NA	0.308533751035793	5	NA	98296	NA	3	7	0	TRUE	AMP (many states)	PASS
659_bTo_pair	PLAGL1	6	143940300	144064599	FALSE	431	-0.504239059693729	30	143136912	149638436	1	2	1	1	2	1	6501524	1	29	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	PLAGL2	20	32192503	32207791	FALSE	1201	-0.583226555890856	26	31757461	32331296	NA	2	NA	NA	2	NA	573835	NA	13	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PLAT	8	42175233	42207724	FALSE	539	-1.05320152150344	8	42051901	42193184	0.342391532111247	0	0	0.342391532111247	0	0	141283	0	3	14	2	FALSE	HOMDEL	PASS
659_bTo_pair	PLAU	10	73909177	73917497	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	11	1	FALSE	CNLOH	PASS
659_bTo_pair	PLAUR	19	43646095	43670547	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	PLB1	2	28457145	28643788	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	58	2	FALSE	DIPLOID	PASS
659_bTo_pair	PLBD1	12	14503661	14568349	FALSE	753	-0.517160615058114	27	12726042	18242949	1	2	1	1	2	1	5516907	1	31	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	PLBD2	12	113358566	113391625	FALSE	806	-0.481242901669781	30	113099979	114403736	1	2	1	1	2	1	1303757	1	13	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	PLCB1	20	8077251	8968360	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	35	4	FALSE	HETLOSS	PASS
659_bTo_pair	PLCB2	15	40278176	40307935	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	38	3	FALSE	HETLOSS	PASS
659_bTo_pair	PLCB3	11	64251523	64269150	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	30	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	PLCB4	20	9068763	9481242	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	38	0	FALSE	HETLOSS	PASS
659_bTo_pair	PLCD1	3	38007496	38029762	FALSE	210	-0.747326004597467	19	37329112	38136668	0.365165917639896	1	0	0.365165917639896	1	0	807556	1	7	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	PLCD3	17	45108967	45133354	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	18	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PLCD4	2	218607765	218637184	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	PLCE1	10	94030812	94332823	FALSE	662	-0.410954559094016	36	89715119	94762760	0.365165917639896	2	0	0.365165917639896	2	0	5047641	2	33	43	5	FALSE	CNLOH	PASS
659_bTo_pair	PLCG1	20	41136960	41196801	FALSE	1207	-0.45870607109039	34	41137791	42067755	NA	2	NA	NA	2	NA	929964	NA	5	33	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PLCG2	16	81739097	81962693	FALSE	986	1.46770362341522	90	81779455	81962712	0.364342740527346	17	NA	0.364342740527346	17	NA	183257	NA	1	58	5	FALSE	AMP	PASS
659_bTo_pair	PLCH1	3	155375580	155745067	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	34	3	FALSE	GAIN	PASS
659_bTo_pair	PLCH2	1	2425980	2505530	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	35	2	FALSE	DIPLOID	PASS
659_bTo_pair	PLCL1	2	197804702	198572581	FALSE	163	-0.632896131155704	26	197453631	198083720	NA	2	NA	NA	2	NA	630089	NA	9	15	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	PLCL2	3	16802651	17090594	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	16	3	FALSE	HETLOSS	PASS
659_bTo_pair	PLCXD2	3	111674676	111846447	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	6	0	FALSE	GAIN	PASS
659_bTo_pair	PLCXD3	5	41306954	41510628	FALSE	316	-0.143574193475256	49	39021030	43704252	0.365165917639896	3	1	0.365165917639896	3	1	4683222	2	28	5	0	FALSE	GAIN	PASS
659_bTo_pair	PLCZ1	12	18683169	18738100	FALSE	755	-0.347739111320178	43	18683333	21462024	0.192136715055622	3	NA	0.192136715055622	3	NA	2778691	NA	14	17	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PLD1	3	171600405	171810950	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	26	0	FALSE	GAIN	PASS
659_bTo_pair	PLD2	17	4807096	4823434	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	25	3	FALSE	HETLOSS	PASS
659_bTo_pair	PLD3	19	40348456	40380439	FALSE	1173	-0.760690164248215	19	40322104	40807873	0.365165917639896	1	0	0.365165917639896	1	0	485769	1	21	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	PLD4	14	104924713	104937790	FALSE	885	-0.488568816150345	30	104868462	105529782	1	2	1	1	2	1	661320	1	18	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	PLD5	1	242082986	242524696	FALSE	84	-0.392646983169906	39	241532515	243426393	NA	2	NA	NA	2	NA	1893878	NA	10	11	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PLD6	17	17200995	17206315	FALSE	1013	1.32513728824751	87	17203003	17242219	0.364342740527346	15	NA	0.364342740527346	15	NA	39216	NA	4	4	0	FALSE	AMP	PASS
659_bTo_pair	PLEC	8	143915147	143976734	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	76	6	FALSE	DIPLOID	PASS
659_bTo_pair	PLEK	2	68365173	68397453	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	9	2	FALSE	DIPLOID	PASS
659_bTo_pair	PLEK2	14	67386983	67412200	FALSE	862	-0.496151350288089	31	65561584	67816009	1	2	1	1	2	1	2254425	1	17	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	PLEKHA1	10	122374696	122442602	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	13	2	FALSE	CNLOH	PASS
659_bTo_pair	PLEKHA2	8	38901235	38973909	FALSE	536	-0.812766686991614	14	38512585	41896345	0.365165917639896	1	0	0.365165917639896	1	0	3383760	1	19	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	PLEKHA3	2	178480468	178516462	FALSE	155	-0.524315670340053	27	177420364	181062892	1	2	1	1	2	1	3642528	1	16	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	PLEKHA4	19	48837097	48868632	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	PLEKHA5	12	19129752	19376400	FALSE	755	-0.347739111320178	43	18683333	21462024	0.192136715055622	3	NA	0.192136715055622	3	NA	2778691	NA	14	34	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	PLEKHA6	1	204218851	204377665	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	24	2	FALSE	DIPLOID	PASS
659_bTo_pair	PLEKHA7	11	16777317	17014443	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	31	4	FALSE	DIPLOID	PASS
659_bTo_pair	PLEKHA8	7	30027404	30130483	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	17	0	FALSE	GAIN	PASS
659_bTo_pair	PLEKHB1	11	73646178	73662819	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	8	0	FALSE	GAIN	PASS
659_bTo_pair	PLEKHB2	2	131104847	131353709	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	26	3	FALSE	DIPLOID	PASS
659_bTo_pair	PLEKHD1	14	69484692	69531551	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	13	2	FALSE	DIPLOID	PASS
659_bTo_pair	PLEKHF1	19	29665056	29675457	FALSE	1163	-0.446590628984043	34	23373705	29714877	NA	2	NA	NA	2	NA	6341172	NA	10	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PLEKHF2	8	95133804	95156684	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	3	0	FALSE	GAIN	PASS
659_bTo_pair	PLEKHG1	6	150599883	150843665	FALSE	435	1.72328230019646	97	150599864	150866015	0.364342740527346	21	NA	0.364342740527346	21	NA	266151	NA	2	40	10	FALSE	AMP	PASS
659_bTo_pair	PLEKHG2	19	39412585	39428415	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	25	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PLEKHG3	14	64704102	64750247	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	28	0	FALSE	DIPLOID	PASS
659_bTo_pair	PLEKHG4	16	67277510	67289499	FALSE	976	-0.467350965811123	34	67110264	67538977	NA	2	NA	NA	2	NA	428713	NA	24	23	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PLEKHG4B	5	92151	189972	FALSE	308	-0.255094097331532	44	92297	1246091	0.345317016959666	3	1	0.345317016959666	3	1	1153794	2	18	29	3	FALSE	GAIN	PASS
659_bTo_pair	PLEKHG5	1	6466092	6520061	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	30	1	FALSE	DIPLOID	PASS
659_bTo_pair	PLEKHG6	12	6310436	6328506	FALSE	741	-0.251609480735115	44	4489790	6567957	0.345317016959666	3	1	0.345317016959666	3	1	2078167	2	28	19	4	FALSE	GAIN	PASS
659_bTo_pair	PLEKHG7	12	92702843	92772455	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	14	4	FALSE	DIPLOID	PASS
659_bTo_pair	PLEKHH1	14	67533301	67589612	FALSE	862	-0.496151350288089	31	65561584	67816009	1	2	1	1	2	1	2254425	1	17	30	4	FALSE	DIPLOID	PASS
659_bTo_pair	PLEKHH2	2	43637273	43767987	FALSE	106	-0.392858868113437	39	42335725	46184779	NA	2	NA	NA	2	NA	3849054	NA	22	36	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PLEKHH3	17	42667914	42676994	FALSE	1038	-0.623371137159426	26	42404937	42698887	NA	2	NA	NA	2	NA	293950	NA	13	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PLEKHJ1	19	2230084	2237704	FALSE	1119	1.38333823500502	87	2164203	2232469	0.364342740527346	16	NA	0.364342740527346	16	NA	68266	NA	3	15	1	TRUE	AMP	PASS
659_bTo_pair	PLEKHM1	17	45435900	45490749	FALSE	1046	-0.746772159255206	19	45395806	47696360	0.365165917639896	1	0	0.365165917639896	1	0	2300554	1	26	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	PLEKHM2	1	15684332	15734769	FALSE	6	-0.41295085321191	39	13779356	15847467	NA	2	NA	NA	2	NA	2068111	NA	18	24	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PLEKHM3	2	207821288	208025560	FALSE	168	-0.499602545595775	30	203936898	208231285	1	2	1	1	2	1	4294387	1	25	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	PLEKHN1	1	966497	975865	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	16	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PLEKHO1	1	150149183	150164720	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	PLEKHO2	15	64841883	64868007	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	PLEKHS1	10	113751454	113783429	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	14	4	FALSE	CNLOH	PASS
659_bTo_pair	PLET1	11	112248479	112260860	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	PLG	6	160702238	160753315	FALSE	444	-0.505238631103688	30	158776425	160753038	1	2	1	1	2	1	1976613	1	17	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	PLGLB1	2	87002559	87021852	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	PLGLB2	2	87748087	87758793	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	PLGRKT	9	5357973	5437878	FALSE	577	-0.270687969755387	46	5163973	5467073	0.298322295679939	3	NA	0.298322295679939	3	NA	303100	NA	6	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PLIN1	15	89664365	89679427	FALSE	925	-0.863518905667221	13	89317527	90079704	0.365165917639896	1	0	0.365165917639896	1	0	762177	1	14	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	PLIN2	9	19108375	19149290	FALSE	581	-0.746183084602222	19	10618009	19786745	0.365165917639896	1	0	0.365165917639896	1	0	9168736	1	24	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	PLIN3	19	4838341	4867768	FALSE	1124	-0.62008955817668	23	4168484	5151543	0.186356639256811	1	0	0.186356639256811	1	0	983059	1	28	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	PLIN4	19	4502180	4518465	FALSE	1124	-0.62008955817668	23	4168484	5151543	0.186356639256811	1	0	0.186356639256811	1	0	983059	1	28	18	4	FALSE	HETLOSS	PASS
659_bTo_pair	PLIN5	19	4522531	4535224	FALSE	1124	-0.62008955817668	23	4168484	5151543	0.186356639256811	1	0	0.186356639256811	1	0	983059	1	28	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	PLK1	16	23677656	23690367	FALSE	960	-0.449512584299377	34	23658521	27234165	NA	2	NA	NA	2	NA	3575644	NA	16	11	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PLK2	5	58453982	58460260	FALSE	322	0.828661512211138	75	57481831	58494837	0.364342740527346	10	NA	0.364342740527346	10	NA	1013006	NA	3	17	4	FALSE	AMP	PASS
659_bTo_pair	PLK3	1	44800225	44805990	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	PLK4	4	127880861	127899195	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	21	3	FALSE	DIPLOID	PASS
659_bTo_pair	PLK5	19	1524074	1536046	FALSE	1116	-0.668595541323287	22	1229189	1605424	0.291335969972972	1	0	0.291335969972972	1	0	376235	1	21	10	3	FALSE	HETLOSS	PASS
659_bTo_pair	PLLP	16	57248547	57284687	FALSE	971	-0.537344591536493	29	57069860	57923335	NA	2	NA	NA	2	NA	853475	NA	21	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PLN	6	118548298	118560730	FALSE	421	-0.534093125771784	29	117482879	126348569	NA	2	NA	NA	2	NA	8865690	NA	29	1	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PLOD1	1	11934205	11975538	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	21	1	FALSE	DIPLOID	PASS
659_bTo_pair	PLOD2	3	146069440	146163653	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	20	0	FALSE	GAIN	PASS
659_bTo_pair	PLOD3	7	101205977	101218420	FALSE	484	-0.570670723449775	26	101042591	102111653	NA	2	NA	NA	2	NA	1069062	NA	15	20	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PLP1	23	103773718	103792619	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	8	1	FALSE	AMP (many states)	PASS
659_bTo_pair	PLP2	23	49171926	49175239	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	PLPBP	8	37762593	37779767	FALSE	530	-0.960558661551373	11	37737954	37777957	0.289956079954009	0	0	0.289956079954009	0	0	40003	0	2	10	0	FALSE	HOMDEL	PASS
659_bTo_pair	PLPP1	5	55424854	55535050	FALSE	319	-0.764156631411702	19	50399919	56556187	0.365165917639896	1	0	0.365165917639896	1	0	6156268	1	28	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	PLPP2	19	281040	291504	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	8	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PLPP3	1	56494747	56645301	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	PLPP4	10	120456954	120589855	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	7	1	FALSE	CNLOH	PASS
659_bTo_pair	PLPP5	8	38263130	38269243	FALSE	532	-0.898955944857558	13	37845201	38269206	0.365165917639896	1	0	0.365165917639896	1	0	424005	1	12	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	PLPP6	9	4662315	4665258	FALSE	574	-0.919846303005392	13	2198627	4849539	0.365165917639896	1	0	0.365165917639896	1	0	2650912	1	11	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	PLPP7	9	131289459	131359022	FALSE	625	-0.794391185935477	14	131261330	132889947	0.365165917639896	1	0	0.365165917639896	1	0	1628617	1	17	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	PLPPR1	9	101028709	101325135	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	PLPPR2	19	11355386	11365698	FALSE	1143	-0.599591757528625	23	11089545	11375998	0.186356639256811	1	0	0.186356639256811	1	0	286453	1	11	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	PLPPR3	19	812488	821977	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	11	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PLPPR4	1	99263953	99309590	FALSE	31	-0.34979279123772	43	94820443	100270584	0.192136715055622	3	NA	0.192136715055622	3	NA	5450141	NA	22	12	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PLPPR5	1	98890245	99005032	FALSE	31	-0.34979279123772	43	94820443	100270584	0.192136715055622	3	NA	0.192136715055622	3	NA	5450141	NA	22	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PLRG1	4	154535006	154550435	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	PLS1	3	142596387	142713664	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	16	2	FALSE	GAIN	PASS
659_bTo_pair	PLS3	23	115561174	115650861	FALSE	1326	0.081501992784242	59	111246621	119452040	0.308533751035793	5	NA	0.308533751035793	5	NA	8205419	NA	28	17	1	FALSE	AMP (many states)	PASS
659_bTo_pair	PLSCR1	3	146515180	146544864	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	9	0	FALSE	GAIN	PASS
659_bTo_pair	PLSCR2	3	146391421	146495991	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	10	1	FALSE	GAIN	PASS
659_bTo_pair	PLSCR3	17	7389727	7394843	FALSE	1000	-0.750226164220686	19	7324407	7655594	0.365165917639896	1	0	0.365165917639896	1	0	331187	1	31	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	PLSCR4	3	146192339	146251179	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	9	0	FALSE	GAIN	PASS
659_bTo_pair	PLSCR5	3	146576555	146606216	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	8	1	FALSE	GAIN	PASS
659_bTo_pair	PLTP	20	45898621	45912155	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	PLVAP	19	17351448	17377350	FALSE	1155	-0.249305971018279	46	17273895	17821522	0.298322295679939	3	NA	0.298322295679939	3	NA	547627	NA	25	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PLXDC1	17	39063303	39154394	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	15	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PLXDC2	10	19816239	20289856	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	14	2	FALSE	CNLOH	PASS
659_bTo_pair	PLXNA1	3	126988594	127037392	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	41	6	FALSE	GAIN	PASS
659_bTo_pair	PLXNA2	1	208022242	208244320	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	37	2	FALSE	DIPLOID	PASS
659_bTo_pair	PLXNA3	23	154458281	154477779	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	36	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	PLXNA4	7	132123332	132648688	FALSE	497	-0.235042143324869	46	131504295	132130584	0.298322295679939	3	NA	0.298322295679939	3	NA	626289	NA	2	38	7	TRUE	GAIN (many states)	PASS
659_bTo_pair	PLXNB1	3	48403854	48430051	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	43	0	FALSE	HETLOSS	PASS
659_bTo_pair	PLXNB2	22	50274979	50307627	FALSE	1271	-0.350898193716427	41	45922979	50285791	0.284729887459054	3	0	0.284729887459054	3	0	4362812	3	30	40	3	TRUE	CNLOH & GAIN	PASS
659_bTo_pair	PLXNB3	23	153764196	153779346	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	41	4	FALSE	INDETERMINATE	PASS
659_bTo_pair	PLXNC1	12	94148723	94307675	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	35	1	FALSE	DIPLOID	PASS
659_bTo_pair	PLXND1	3	129555175	129606818	FALSE	240	-0.311262736248051	40	128620554	130098189	0.308149309490068	3	1	0.308149309490068	3	1	1477635	2	22	42	8	FALSE	GAIN	PASS
659_bTo_pair	PM20D1	1	205828022	205850132	FALSE	69	-0.48847123055109	34	205798087	206732058	NA	2	NA	NA	2	NA	933971	NA	14	14	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PM20D2	6	89146050	89165565	FALSE	409	-0.443147941484883	34	89098919	90586786	NA	2	NA	NA	2	NA	1487867	NA	13	8	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PMAIP1	18	59899948	59904306	TRUE	1108	0.428388383073274	66	59697326	60372043	0.364342740527346	7	NA	0.364342740527346	7	NA	674717	NA	3	11	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	PMCH	12	102196459	102197845	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	PMEL	12	55954105	55973317	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	26	0	TRUE	DIPLOID	PASS
659_bTo_pair	PMEPA1	20	57648392	57711536	FALSE	1221	-0.44936578355072	34	56249153	58715213	NA	2	NA	NA	2	NA	2466060	NA	27	8	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PMF1	1	156212993	156240042	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	PMF1-BGLAP	1	156212982	156243332	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	PMFBP1	16	72112157	72176878	FALSE	983	-0.428709389755029	30	71178941	72171154	1	2	1	1	2	1	992213	1	22	23	1	FALSE	DIPLOID	PASS
659_bTo_pair	PML	15	73994673	74047812	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	PMM1	22	41576894	41589890	FALSE	1269	-0.443951758803067	34	41205309	42514754	NA	2	NA	NA	2	NA	1309445	NA	31	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PMM2	16	8788823	8849331	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	PMP2	8	81440326	81447523	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	4	0	FALSE	GAIN	PASS
659_bTo_pair	PMP22	17	15229777	15265357	FALSE	1009	-0.493836167698037	33	12666172	16027364	0.344071079426502	2	0	0.344071079426502	2	0	3361192	2	21	5	1	FALSE	CNLOH	PASS
659_bTo_pair	PMPCA	9	136410570	136423761	FALSE	629	-0.955558414525678	9	134750808	136485014	0.291955377254426	0	0	0.291955377254426	0	0	1734206	0	30	14	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PMPCB	7	103297422	103329511	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	27	0	FALSE	DIPLOID	PASS
659_bTo_pair	PMS1	2	189784085	189877629	TRUE	160	0.966258345616877	78	189775687	190057466	0.364342740527346	11	NA	0.364342740527346	11	NA	281779	NA	4	33	0	FALSE	AMP	PASS
659_bTo_pair	PMS2	7	5973239	6009125	TRUE	455	0.0869447764468888	59	5592963	6026819	0.308533751035793	5	NA	0.308533751035793	5	NA	433856	NA	8	25	4	FALSE	AMP (many states)	PASS
659_bTo_pair	PMVK	1	154924734	154936991	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	PNCK	23	153669730	153689010	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	13	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	PNISR	6	99398051	99425331	FALSE	411	-0.455063723695114	34	95586870	106069771	NA	2	NA	NA	2	NA	10482901	NA	27	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PNKD	2	218270392	218346793	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	25	4	FALSE	HETLOSS	PASS
659_bTo_pair	PNKP	19	49859882	49878351	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	24	0	FALSE	HETLOSS	PASS
659_bTo_pair	PNLDC1	6	159800249	159820704	FALSE	444	-0.505238631103688	30	158776425	160753038	1	2	1	1	2	1	1976613	1	17	19	2	FALSE	DIPLOID	PASS
659_bTo_pair	PNLIP	10	116545931	116567855	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	12	0	FALSE	CNLOH	PASS
659_bTo_pair	PNLIPRP1	10	116590385	116609175	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	12	0	FALSE	CNLOH	PASS
659_bTo_pair	PNLIPRP3	10	116427867	116477957	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	12	2	FALSE	CNLOH	PASS
659_bTo_pair	PNMA1	14	73711783	73714372	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	PNMA2	8	26504686	26514092	FALSE	522	-0.616914645700195	26	26383178	27467373	NA	2	NA	NA	2	NA	1084195	NA	8	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PNMA3	23	153056409	153060467	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	6	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	PNMA5	23	152988824	152994127	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	6	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	PNMA6E	23	153395640	153401420	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	5	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	PNMA6F	23	153317681	153321822	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	6	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	PNMA8A	19	46466491	46471563	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PNMA8B	19	46486906	46496498	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	8	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PNMT	17	39667981	39670475	FALSE	1026	-0.886931394907893	13	39564387	39685917	0.365165917639896	1	0	0.365165917639896	1	0	121530	1	7	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	PNN	14	39175183	39183218	FALSE	858	-0.388807455224718	39	37680254	45134449	NA	2	NA	NA	2	NA	7454195	NA	16	14	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PNO1	2	68157844	68176238	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	9	2	FALSE	DIPLOID	PASS
659_bTo_pair	PNOC	8	28316986	28343355	FALSE	523	-1.08188475411826	8	27469296	29263060	0.342391532111247	0	0	0.342391532111247	0	0	1793764	0	18	3	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PNP	14	20468954	20477094	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	PNPLA1	6	36243203	36312229	FALSE	393	-0.47521086997284	30	35476361	36677919	1	2	1	1	2	1	1201558	1	21	13	3	FALSE	DIPLOID	PASS
659_bTo_pair	PNPLA2	11	818902	825573	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	11	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PNPLA3	22	43923739	43964488	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	14	0	FALSE	CNLOH	PASS
659_bTo_pair	PNPLA4	23	7898247	7927739	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	6	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	PNPLA5	22	43879678	43892013	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	10	1	FALSE	CNLOH	PASS
659_bTo_pair	PNPLA6	19	7534004	7561764	FALSE	1130	-0.690953718254595	21	7440128	7870576	0.140309795179477	0	0	0.140309795179477	0	0	430448	0	25	35	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PNPLA7	9	137459953	137550534	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	36	4	FALSE	HETLOSS	PASS
659_bTo_pair	PNPLA8	7	108470422	108569666	FALSE	488	-0.464127371400283	34	107070260	116559206	NA	2	NA	NA	2	NA	9488946	NA	33	20	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PNPO	17	47941506	47949308	FALSE	1049	-0.703360644300681	22	47810585	48529853	0.291335969972972	1	0	0.291335969972972	1	0	719268	1	15	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	PNPT1	2	55634265	55693910	FALSE	112	-0.500204609420994	34	55349629	58154733	NA	2	NA	NA	2	NA	2805104	NA	7	29	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PNRC1	6	89080751	89085160	FALSE	408	2.21380467584721	108	89080771	89098700	0.364342740527346	31	NA	0.364342740527346	31	NA	17929	NA	2	13	1	FALSE	AMP	PASS
659_bTo_pair	PNRC2	1	23956839	23963462	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	POC1A	3	52075253	52154690	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	POC1B	12	89419718	89526024	FALSE	794	-0.258431968401282	46	85301316	91178343	0.298322295679939	3	NA	0.298322295679939	3	NA	5877027	NA	19	20	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	POC1B-GALNT4	12	89519408	89526262	FALSE	794	-0.258431968401282	46	85301316	91178343	0.298322295679939	3	NA	0.298322295679939	3	NA	5877027	NA	19	10	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	POC5	5	75674124	75717481	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	PODN	1	53062052	53085502	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	14	3	FALSE	DIPLOID	PASS
659_bTo_pair	PODNL1	19	13931187	13953392	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	14	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PODXL	7	131500262	131558217	FALSE	497	-0.235042143324869	46	131504295	132130584	0.298322295679939	3	NA	0.298322295679939	3	NA	626289	NA	2	11	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	PODXL2	3	127629181	127672809	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	13	1	FALSE	GAIN	PASS
659_bTo_pair	POF1B	23	85277396	85379743	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	17	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	POFUT1	20	32207880	32238667	FALSE	1201	-0.583226555890856	26	31757461	32331296	NA	2	NA	NA	2	NA	573835	NA	13	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	POFUT2	21	45263928	45287898	FALSE	1239	-0.568555801579827	23	44960223	46664365	0.186356639256811	1	0	0.186356639256811	1	0	1704142	1	18	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	POGK	1	166839447	166856344	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	POGLUT1	3	119468938	119494708	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	11	0	FALSE	GAIN	PASS
659_bTo_pair	POGZ	1	151402724	151459465	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	26	2	FALSE	DIPLOID	PASS
659_bTo_pair	POLA1	23	24693919	24996986	FALSE	1280	-0.105034146595124	53	24465460	24995963	0.273255132087987	4	NA	0.273255132087987	4	NA	530503	NA	3	37	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	POLA2	11	65261762	65305589	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	18	0	FALSE	GAIN	PASS
659_bTo_pair	POLB	8	42338454	42371808	FALSE	541	-0.815492706726597	16	42338595	47735321	0.365165917639896	1	0	0.365165917639896	1	0	5396726	1	15	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	POLD1	19	50384204	50418016	TRUE	1189	1.04513167526385	81	50382423	50418015	0.364342740527346	12	NA	0.364342740527346	12	NA	35592	NA	3	34	7	FALSE	AMP	PASS
659_bTo_pair	POLD2	7	44114681	44124358	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	12	0	FALSE	GAIN	PASS
659_bTo_pair	POLD3	11	74493851	74669117	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	16	0	FALSE	GAIN	PASS
659_bTo_pair	POLD4	11	67350777	67356972	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	4	0	FALSE	GAIN	PASS
659_bTo_pair	POLDIP2	17	28347177	28357522	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	POLDIP3	22	42583721	42614962	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	10	0	FALSE	CNLOH	PASS
659_bTo_pair	POLE	12	132623753	132687365	TRUE	817	1.15137330156403	82	132623775	132687239	0.364342740527346	13	6	0.364342740527346	13	6	63464	7	1	62	18	FALSE	AMP	PASS
659_bTo_pair	POLE2	14	49643555	49688422	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	POLE3	9	113407235	113410672	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	POLE4	2	74958492	74970128	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	POLG	15	89305198	89334861	FALSE	924	0.594114121962222	71	89244010	89317364	0.364342740527346	8	NA	0.364342740527346	8	NA	73354	NA	2	39	4	TRUE	INDETERMINATE	PASS
659_bTo_pair	POLG2	17	64477785	64497036	FALSE	1066	-0.447707994366894	34	63941413	64859452	NA	2	NA	NA	2	NA	918039	NA	12	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	POLH	6	43576150	43615660	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	POLI	18	54269404	54321266	FALSE	1105	-0.785555027616249	16	52752095	58670682	0.365165917639896	1	0	0.365165917639896	1	0	5918587	1	19	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	POLK	5	75511756	75601144	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	POLL	10	101578882	101588270	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	11	0	FALSE	CNLOH	PASS
659_bTo_pair	POLM	7	44072247	44082540	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	12	2	FALSE	GAIN	PASS
659_bTo_pair	POLN	4	2071918	2242121	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	36	6	FALSE	GAIN	PASS
659_bTo_pair	POLQ	3	121431427	121546641	FALSE	237	0.869395722623997	76	121431426	121545958	0.364342740527346	10	NA	0.364342740527346	10	NA	114532	NA	1	46	4	FALSE	AMP	PASS
659_bTo_pair	POLR1A	2	86020216	86106155	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	36	4	FALSE	DIPLOID	PASS
659_bTo_pair	POLR1B	2	112541915	112577150	FALSE	138	-0.423459519967032	34	112060069	113201423	NA	2	NA	NA	2	NA	1141354	NA	21	21	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	POLR1C	6	43509702	43562419	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	43	0	FALSE	DIPLOID	PASS
659_bTo_pair	POLR1D	13	27620742	27744237	FALSE	824	-0.820211361281197	14	23365275	27988570	0.365165917639896	1	0	0.365165917639896	1	0	4623295	1	32	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	POLR1E	9	37485935	37503697	FALSE	595	-0.209027397852981	47	37442028	67884575	0.365165917639896	3	1	0.365165917639896	3	1	30442547	2	35	13	0	FALSE	GAIN	PASS
659_bTo_pair	POLR2A	17	7484366	7514616	FALSE	1000	-0.750226164220686	19	7324407	7655594	0.365165917639896	1	0	0.365165917639896	1	0	331187	1	31	38	1	FALSE	HETLOSS	PASS
659_bTo_pair	POLR2B	4	56977722	57031168	FALSE	285	-0.676685623676823	22	55346376	64409389	0.291335969972972	1	0	0.291335969972972	1	0	9063013	1	23	25	0	FALSE	HETLOSS	PASS
659_bTo_pair	POLR2C	16	57462387	57472010	FALSE	971	-0.537344591536493	29	57069860	57923335	NA	2	NA	NA	2	NA	853475	NA	21	9	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	POLR2D	2	127843551	127858157	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	POLR2E	19	1086579	1095380	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	POLR2F	22	37952607	38041915	FALSE	1263	-0.528184158498335	29	36991204	37967644	NA	2	NA	NA	2	NA	976440	NA	31	29	3	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	POLR2G	11	62761544	62766710	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	POLR2H	3	184361718	184368596	FALSE	259	-0.260370931250901	44	183654025	185254015	0.345317016959666	3	1	0.345317016959666	3	1	1599990	2	31	5	0	FALSE	GAIN	PASS
659_bTo_pair	POLR2I	19	36113710	36115346	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	POLR2J	7	102473118	102478907	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	POLR2J2	7	102665368	102671629	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	POLR2J3	7	102537918	102572653	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	POLR2K	8	100150584	100154002	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	3	0	FALSE	GAIN	PASS
659_bTo_pair	POLR2L	11	837356	842545	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	POLR2M	15	57706629	57782762	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	POLR3A	10	77969251	78029545	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	32	0	FALSE	CNLOH	PASS
659_bTo_pair	POLR3B	12	106357658	106510198	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	29	0	FALSE	DIPLOID	PASS
659_bTo_pair	POLR3C	1	145824088	145842505	FALSE	44	-0.0508975396039555	55	119911615	146019534	0.328696605851359	4	NA	0.328696605851359	4	NA	26107919	NA	33	15	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	POLR3D	8	22245104	22254600	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	POLR3E	16	22297375	22335103	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	POLR3F	20	18467127	18484643	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	9	2	FALSE	DIPLOID	PASS
659_bTo_pair	POLR3G	5	90471748	90514553	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	POLR3GL	1	145964702	145978848	FALSE	44	-0.0508975396039555	55	119911615	146019534	0.328696605851359	4	NA	0.328696605851359	4	NA	26107919	NA	33	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	POLR3H	22	41525804	41544606	FALSE	1269	-0.443951758803067	34	41205309	42514754	NA	2	NA	NA	2	NA	1309445	NA	31	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	POLR3K	16	46407	53628	FALSE	934	-0.725703643263354	19	47610	287124	0.365165917639896	1	0	0.365165917639896	1	0	239514	1	16	3	1	FALSE	HETLOSS	PASS
659_bTo_pair	POLRMT	19	617224	633604	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	26	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	POM121	7	72879365	72951440	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	19	2	FALSE	DIPLOID	PASS
659_bTo_pair	POM121C	7	75416787	75486271	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	16	5	FALSE	DIPLOID	PASS
659_bTo_pair	POM121L12	7	53035642	53036924	FALSE	467	-0.115184963745349	53	50463290	54757565	0.273255132087987	4	NA	0.273255132087987	4	NA	4294275	NA	7	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	POM121L2	6	27285903	27312170	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	POMC	2	25160853	25168903	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	POMGNT1	1	46188682	46220305	FALSE	16	-0.485631979032023	30	46175602	48453048	1	2	1	1	2	1	2277446	1	32	29	1	FALSE	DIPLOID	PASS
659_bTo_pair	POMGNT2	3	43079232	43106076	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	7	2	FALSE	HETLOSS	PASS
659_bTo_pair	POMK	8	43093506	43123434	FALSE	541	-0.815492706726597	16	42338595	47735321	0.365165917639896	1	0	0.365165917639896	1	0	5396726	1	15	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	POMP	13	28659104	28678925	FALSE	828	-0.893717680890687	13	28659152	32311865	0.365165917639896	1	0	0.365165917639896	1	0	3652713	1	17	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	POMT1	9	131502902	131523806	FALSE	625	-0.794391185935477	14	131261330	132889947	0.365165917639896	1	0	0.365165917639896	1	0	1628617	1	17	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	POMT2	14	77274956	77320884	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	POMZP3	7	76609986	76627261	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	PON1	7	95297676	95324707	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	PON2	7	95404863	95435329	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	PON3	7	95359944	95396368	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	POP1	8	98117297	98159834	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	20	1	FALSE	GAIN	PASS
659_bTo_pair	POP4	19	29604017	29617237	FALSE	1163	-0.446590628984043	34	23373705	29714877	NA	2	NA	NA	2	NA	6341172	NA	10	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	POP5	12	120578764	120581398	FALSE	810	-0.438737881374958	34	120127967	120903912	NA	2	NA	NA	2	NA	775945	NA	20	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	POP7	7	100706053	100707495	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	POPDC2	3	119636457	119665324	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	7	4	FALSE	GAIN	PASS
659_bTo_pair	POPDC3	6	105158280	105179995	FALSE	411	-0.455063723695114	34	95586870	106069771	NA	2	NA	NA	2	NA	10482901	NA	27	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	POR	7	75899200	75986855	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	15	2	FALSE	DIPLOID	PASS
659_bTo_pair	PORCN	23	48508962	48520814	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	13	0	FALSE	AMP (many states)	PASS
659_bTo_pair	POSTN	13	37562583	37598844	FALSE	830	-0.745621963362667	19	32401848	39788354	0.365165917639896	1	0	0.365165917639896	1	0	7386506	1	30	25	0	FALSE	HETLOSS	PASS
659_bTo_pair	POT1	7	124822386	124929983	TRUE	491	1.10899134479158	81	124817467	124935010	0.364342740527346	13	NA	0.364342740527346	13	NA	117543	NA	1	37	8	FALSE	AMP	PASS
659_bTo_pair	POTEB2	15	20835372	20866314	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	POTEB3	15	21408243	21440451	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	POTEC	18	14507339	14543585	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	13	5	FALSE	GAIN	PASS
659_bTo_pair	POTED	21	13609858	13641585	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	POTEE	2	131218067	131265278	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	18	3	FALSE	DIPLOID	PASS
659_bTo_pair	POTEF	2	130074030	130129222	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	17	6	FALSE	DIPLOID	PASS
659_bTo_pair	POTEG	14	19402486	19434341	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	10	3	FALSE	DIPLOID	PASS
659_bTo_pair	POTEH	22	15690026	15721631	FALSE	1240	-0.594689860601271	26	15528179	18606839	NA	2	NA	NA	2	NA	3078660	NA	21	9	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	POTEI	2	130459455	130509666	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	POTEJ	2	130611481	130658091	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	16	4	FALSE	DIPLOID	PASS
659_bTo_pair	POTEM	14	18967434	18999012	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	7	2	FALSE	DIPLOID	PASS
659_bTo_pair	POU1F1	3	87259404	87276587	FALSE	232	-0.785224171872638	14	72888305	88156485	0.365165917639896	1	0	0.365165917639896	1	0	15268180	1	18	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	POU2AF1	11	111352252	111455630	FALSE	723	-0.542672588801529	29	108383083	111912852	NA	2	NA	NA	2	NA	3529769	NA	24	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	POU2F1	1	167220829	167427345	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	POU2F2	19	42086110	42196585	FALSE	1177	-0.671885212726332	22	41354916	42250573	0.291335969972972	1	0	0.291335969972972	1	0	895657	1	32	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	POU2F3	11	120236640	120319944	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	POU3F1	1	38044611	38046794	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	POU3F2	6	98834592	98839470	FALSE	411	-0.455063723695114	34	95586870	106069771	NA	2	NA	NA	2	NA	10482901	NA	27	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	POU3F3	2	104855511	104858574	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	POU3F4	23	83508261	83512127	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	5	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	POU4F1	13	78598362	78603560	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	5	0	FALSE	CNLOH	PASS
659_bTo_pair	POU4F2	4	146638893	146642474	FALSE	300	-0.423460920061428	34	143186078	151174790	NA	2	NA	NA	2	NA	7988712	NA	32	6	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	POU4F3	5	146338839	146341722	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	POU5F1	6	31164337	31180731	FALSE	379	-0.524744136561063	27	30546321	31270541	1	2	1	1	2	1	724220	1	30	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	POU5F1B	8	127322183	127420066	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	5	0	TRUE	GAIN	PASS
659_bTo_pair	POU5F2	5	93733220	93741637	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	POU6F1	12	51186936	51217708	FALSE	772	-0.61197679162419	26	50109466	51920864	NA	2	NA	NA	2	NA	1811398	NA	27	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	POU6F2	7	38977998	39493095	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	13	2	FALSE	GAIN	PASS
659_bTo_pair	PP2D1	3	19979961	20012330	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	PPA1	10	70202830	70233911	FALSE	651	-0.523280686314431	28	68722553	70760843	0.351300687168522	2	0	0.351300687168522	2	0	2038290	2	27	11	0	FALSE	CNLOH	PASS
659_bTo_pair	PPA2	4	105369077	105474081	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	PPAN	19	10106289	10111634	FALSE	1136	-0.657304673205362	21	8981156	10119920	0.140309795179477	0	0	0.140309795179477	0	0	1138764	0	32	11	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PPAN-P2RY11	19	10106223	10114780	FALSE	1136	-0.657304673205362	21	8981156	10119920	0.140309795179477	0	0	0.140309795179477	0	0	1138764	0	32	17	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PPARA	22	46150521	46243756	FALSE	1271	-0.350898193716427	41	45922979	50285791	0.284729887459054	3	0	0.284729887459054	3	0	4362812	3	30	9	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	PPARD	6	35342558	35428191	FALSE	392	-0.183129995366178	48	35241630	35475885	0.365165917639896	3	NA	0.365165917639896	3	NA	234255	NA	7	8	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	PPARG	3	12287368	12434356	FALSE	200	0.0261499129195628	56	12190545	12297387	0.365165917639896	4	NA	0.365165917639896	4	NA	106842	NA	2	324	6	TRUE	GAIN (many states)	PASS
659_bTo_pair	PPARGC1A	4	23755041	23904089	FALSE	278	-0.217595572850614	44	20704713	38137253	0.345317016959666	3	1	0.345317016959666	3	1	17432540	2	29	17	3	FALSE	GAIN	PASS
659_bTo_pair	PPARGC1B	5	149730298	149855022	FALSE	344	-0.892413249330443	13	149616577	150050506	0.365165917639896	1	0	0.365165917639896	1	0	433929	1	6	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	PPAT	4	56393362	56435615	FALSE	285	-0.676685623676823	22	55346376	64409389	0.291335969972972	1	0	0.291335969972972	1	0	9063013	1	23	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	PPBP	4	73987038	73988197	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	PPCDC	15	75023555	75117462	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	PPCS	1	42456117	42473385	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	PPDPF	20	63520724	63522206	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	PPDPFL	8	49054311	49076090	FALSE	543	-0.403572692824667	39	47962754	54147613	NA	2	NA	NA	2	NA	6184859	NA	18	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PPEF1	23	18675909	18827921	FALSE	1276	0.0763243231691416	59	15827382	20064777	0.308533751035793	5	NA	0.308533751035793	5	NA	4237395	NA	24	16	0	FALSE	AMP (many states)	PASS
659_bTo_pair	PPEF2	4	75859864	75902571	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	PPFIA1	11	70270700	70385312	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	29	0	FALSE	GAIN	PASS
659_bTo_pair	PPFIA2	12	81257975	81759553	FALSE	793	-0.510041181295141	29	76355979	85286979	NA	2	NA	NA	2	NA	8931000	NA	22	35	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PPFIA3	19	49119389	49151026	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	32	0	FALSE	HETLOSS	PASS
659_bTo_pair	PPFIA4	1	203026498	203078740	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	32	0	FALSE	DIPLOID	PASS
659_bTo_pair	PPFIBP1	12	27523431	27695564	FALSE	759	-0.427669886187443	30	25503824	31088026	1	2	1	1	2	1	5584202	1	28	29	0	FALSE	DIPLOID	PASS
659_bTo_pair	PPFIBP2	11	7513298	7657127	FALSE	683	-0.403180715137318	35	6615199	8138345	1	2	1	1	2	1	1523146	1	28	31	0	FALSE	DIPLOID	PASS
659_bTo_pair	PPHLN1	12	42238447	42459715	FALSE	764	-0.478463991093384	34	40959192	45805435	NA	2	NA	NA	2	NA	4846243	NA	16	22	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PPIA	7	44796680	44824564	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	5	0	FALSE	GAIN	PASS
659_bTo_pair	PPIAL4A	1	120889746	120890405	FALSE	44	-0.0508975396039555	55	119911615	146019534	0.328696605851359	4	NA	0.328696605851359	4	NA	26107919	NA	33	1	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PPIAL4C	1	149583865	149584464	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	PPIAL4D	1	145241630	145242124	FALSE	44	-0.0508975396039555	55	119911615	146019534	0.328696605851359	4	NA	0.328696605851359	4	NA	26107919	NA	33	2	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PPIAL4G	1	148479824	148483679	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	PPIB	15	64155812	64163205	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	PPIC	5	123023250	123036741	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	PPID	4	158709134	158723396	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	PPIE	1	39692182	39763914	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	PPIF	10	79347469	79355337	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	6	0	FALSE	CNLOH	PASS
659_bTo_pair	PPIG	2	169584340	169641406	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	16	3	FALSE	DIPLOID	PASS
659_bTo_pair	PPIH	1	42658425	42676758	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	PPIL1	6	36854827	36875024	FALSE	395	-0.486049210799182	34	36704239	37028105	NA	2	NA	NA	2	NA	323866	NA	7	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PPIL2	22	21666009	21700015	FALSE	1246	-0.481954888210425	34	21001894	21693896	NA	2	NA	NA	2	NA	692002	NA	14	20	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	PPIL3	2	200870907	200889303	FALSE	164	-0.381871160033202	39	198084145	201228955	NA	2	NA	NA	2	NA	3144810	NA	19	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PPIL4	6	149504733	149546038	FALSE	431	-0.504239059693729	30	143136912	149638436	1	2	1	1	2	1	6501524	1	29	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	PPIL6	6	109390215	109441171	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	PPIP5K1	15	43533462	43590253	FALSE	902	-0.672637691845835	22	43521582	44676538	0.291335969972972	1	0	0.291335969972972	1	0	1154956	1	21	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	PPIP5K2	5	103120149	103212799	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	33	0	FALSE	HETLOSS	PASS
659_bTo_pair	PPL	16	4882507	4960741	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	34	3	FALSE	DIPLOID	PASS
659_bTo_pair	PPM1A	14	60245752	60299087	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	PPM1B	2	44167969	44244384	FALSE	106	-0.392858868113437	39	42335725	46184779	NA	2	NA	NA	2	NA	3849054	NA	22	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PPM1D	17	60600183	60666280	FALSE	1061	1.42456168148468	88	60525917	60666291	0.364342740527346	17	NA	0.364342740527346	17	NA	140374	NA	2	22	1	FALSE	AMP	PASS
659_bTo_pair	PPM1E	17	58755869	58985176	FALSE	1058	-0.423419268198233	34	58422367	59890994	NA	2	NA	NA	2	NA	1468627	NA	20	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PPM1F	22	21919420	21952837	FALSE	1248	-0.440655178794865	34	21923114	22646364	NA	2	NA	NA	2	NA	723250	NA	7	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PPM1G	2	27381194	27409687	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	PPM1H	12	62643982	62935037	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	PPM1J	1	112709994	112715477	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	PPM1K	4	88257620	88284769	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	PPM1L	3	160755602	161078907	FALSE	250	-0.231905273142314	46	156829339	161250770	0.298322295679939	3	NA	0.298322295679939	3	NA	4421431	NA	26	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PPM1M	3	52245793	52250597	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	PPM1N	19	45488777	45502510	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	18	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PPME1	11	74171099	74254703	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	14	0	FALSE	GAIN	PASS
659_bTo_pair	PPOX	1	161166410	161178013	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	PPP1CA	11	67398183	67421183	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	30	5	FALSE	GAIN	PASS
659_bTo_pair	PPP1CB	2	28751640	28802940	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	PPP1CC	12	110719680	110742939	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	PPP1R10	6	30600400	30618612	FALSE	379	-0.524744136561063	27	30546321	31270541	1	2	1	1	2	1	724220	1	30	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	PPP1R11	6	30066709	30070333	FALSE	377	-0.687880370218139	22	29953381	30346790	0.291335969972972	1	0	0.291335969972972	1	0	393409	1	11	3	1	FALSE	HETLOSS	PASS
659_bTo_pair	PPP1R12A	12	79773563	79935460	FALSE	793	-0.510041181295141	29	76355979	85286979	NA	2	NA	NA	2	NA	8931000	NA	22	27	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PPP1R12B	1	202348699	202592706	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	29	0	FALSE	DIPLOID	PASS
659_bTo_pair	PPP1R12C	19	55090913	55117559	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	20	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PPP1R13B	14	103733195	103847590	FALSE	883	-0.69016701050987	21	103712930	104759455	0.140309795179477	0	0	0.140309795179477	0	0	1046525	0	14	21	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PPP1R13L	19	45379634	45406349	FALSE	1183	-0.825302678997359	16	45373709	45406671	0.365165917639896	1	0	0.365165917639896	1	0	32962	1	2	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	PPP1R14A	19	38251237	38256591	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	PPP1R14B	11	64244480	64246941	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PPP1R14C	6	150143076	150250357	FALSE	434	-0.174052460462599	51	150020934	150398272	0.365165917639896	3	NA	0.365165917639896	3	NA	377338	NA	4	5	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	PPP1R14D	15	40815445	40828709	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	PPP1R15A	19	48872392	48876057	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	PPP1R15B	1	204403387	204411791	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	9	0	TRUE	DIPLOID	PASS
659_bTo_pair	PPP1R16A	8	144477969	144502121	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	PPP1R16B	20	38805705	38923024	FALSE	1205	-0.619744376635615	23	37518926	41023791	0.186356639256811	1	0	0.186356639256811	1	0	3504865	1	19	13	1	FALSE	HETLOSS	PASS
659_bTo_pair	PPP1R17	7	31686715	31708455	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	4	0	FALSE	GAIN	PASS
659_bTo_pair	PPP1R18	6	30676389	30687895	FALSE	379	-0.524744136561063	27	30546321	31270541	1	2	1	1	2	1	724220	1	30	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	PPP1R1A	12	54575387	54588659	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	PPP1R1B	17	39626740	39636626	FALSE	1026	-0.886931394907893	13	39564387	39685917	0.365165917639896	1	0	0.365165917639896	1	0	121530	1	7	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	PPP1R1C	2	181954241	182131398	FALSE	157	-0.495064743595466	30	181539293	185786350	1	2	1	1	2	1	4247057	1	12	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	PPP1R2	3	195514425	195543386	FALSE	269	-0.263219948753545	44	189957970	195888442	0.345317016959666	3	1	0.345317016959666	3	1	5930472	2	31	7	0	FALSE	GAIN	PASS
659_bTo_pair	PPP1R21	2	48440598	48515391	FALSE	110	-0.435434252584523	30	48441014	54599245	1	2	1	1	2	1	6158231	1	18	23	2	FALSE	DIPLOID	PASS
659_bTo_pair	PPP1R26	9	135479079	135488893	FALSE	629	-0.955558414525678	9	134750808	136485014	0.291955377254426	0	0	0.291955377254426	0	0	1734206	0	30	14	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PPP1R27	17	81833492	81835050	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	PPP1R2B	5	156850538	156852528	FALSE	351	-0.617975601907695	26	154002251	157057925	NA	2	NA	NA	2	NA	3055674	NA	15	3	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PPP1R2C	23	42777368	42778247	FALSE	1290	-0.118437036786996	53	41447899	44844689	0.273255132087987	4	NA	0.273255132087987	4	NA	3396790	NA	11	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PPP1R32	11	61481120	61490931	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	12	0	FALSE	GAIN	PASS
659_bTo_pair	PPP1R35	7	100435282	100436565	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	PPP1R36	14	64549902	64589380	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	PPP1R37	19	45091396	45148077	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	PPP1R3A	7	113876777	114075920	FALSE	488	-0.464127371400283	34	107070260	116559206	NA	2	NA	NA	2	NA	9488946	NA	33	16	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PPP1R3B	8	9136255	9151574	FALSE	515	-0.798201426688095	16	9008002	10611590	0.365165917639896	1	0	0.365165917639896	1	0	1603588	1	7	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	PPP1R3C	10	91628442	91633054	FALSE	662	-0.410954559094016	36	89715119	94762760	0.365165917639896	2	0	0.365165917639896	2	0	5047641	2	33	5	0	FALSE	CNLOH	PASS
659_bTo_pair	PPP1R3D	20	59936668	59940297	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	PPP1R3E	14	23295643	23302848	FALSE	850	-0.604709518345526	26	22902059	23302562	NA	2	NA	NA	2	NA	400503	NA	18	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PPP1R3F	23	49269843	49301461	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	11	0	FALSE	AMP (many states)	PASS
659_bTo_pair	PPP1R3G	6	5084581	5089487	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	PPP1R42	8	66964099	67056604	FALSE	550	-0.186881774239562	48	60208949	67746087	0.365165917639896	3	NA	0.365165917639896	3	NA	7537138	NA	33	10	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PPP1R7	2	241149576	241183652	FALSE	194	-0.588828356865968	23	240025214	241817025	0.186356639256811	1	0	0.186356639256811	1	0	1791811	1	34	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	PPP1R8	1	27830778	27851676	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	PPP1R9A	7	94907202	95296415	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	28	0	FALSE	HETLOSS	PASS
659_bTo_pair	PPP1R9B	17	50133735	50150630	FALSE	1053	-0.561829441831031	26	49646906	50626743	NA	2	NA	NA	2	NA	979837	NA	25	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PPP2CA	5	134194334	134226142	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	PPP2CB	8	30774457	30814314	FALSE	524	-0.752404429217175	19	29337070	31032666	0.365165917639896	1	0	0.365165917639896	1	0	1695596	1	13	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	PPP2R1A	19	52190039	52229533	TRUE	1191	1.13441166529856	83	52155074	52229710	0.364342740527346	13	NA	0.364342740527346	13	NA	74636	NA	2	38	4	FALSE	AMP	PASS
659_bTo_pair	PPP2R1B	11	111726908	111766427	FALSE	723	-0.542672588801529	29	108383083	111912852	NA	2	NA	NA	2	NA	3529769	NA	24	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PPP2R2A	8	26291491	26372680	FALSE	521	0.769125971629093	74	26042080	26372711	0.364342740527346	9	NA	0.364342740527346	9	NA	330631	NA	2	33	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	PPP2R2B	5	146581146	147084784	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	14	1	FALSE	HETLOSS	PASS
659_bTo_pair	PPP2R2C	4	6320578	6563600	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	13	1	FALSE	GAIN	PASS
659_bTo_pair	PPP2R2D	10	131900644	131959834	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	9	0	FALSE	CNLOH	PASS
659_bTo_pair	PPP2R3A	3	135965673	136147891	FALSE	243	0.194698893310263	62	134795430	136855479	0.364342740527346	5	NA	0.364342740527346	5	NA	2060049	NA	6	22	2	FALSE	AMP (many states)	PASS
659_bTo_pair	PPP2R3C	14	35085467	35122517	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	PPP2R5A	1	212285537	212361863	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	PPP2R5B	11	64917553	64934473	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	14	0	FALSE	GAIN	PASS
659_bTo_pair	PPP2R5C	14	101761798	101927989	FALSE	876	-0.546199181806584	27	96039535	102050530	1	2	1	1	2	1	6010995	1	30	18	1	FALSE	DIPLOID	PASS
659_bTo_pair	PPP2R5D	6	42984499	43012342	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	16	2	FALSE	DIPLOID	PASS
659_bTo_pair	PPP2R5E	14	63371357	63543374	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	PPP3CA	4	101023409	101348278	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	PPP3CB	10	73436428	73496024	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	15	0	FALSE	CNLOH	PASS
659_bTo_pair	PPP3CC	8	22440819	22541142	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	PPP3R1	2	68178857	68256237	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	PPP3R2	9	101591615	101595021	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	PPP4C	16	30075978	30085377	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	PPP4R1	18	9546791	9615240	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	22	0	FALSE	GAIN	PASS
659_bTo_pair	PPP4R2	3	72996785	73069199	FALSE	232	-0.785224171872638	14	72888305	88156485	0.365165917639896	1	0	0.365165917639896	1	0	15268180	1	18	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	PPP4R3A	14	91457611	91510554	FALSE	870	-0.471399657488227	30	81180359	92000019	1	2	1	1	2	1	10819660	1	29	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	PPP4R3B	2	55547292	55618880	FALSE	112	-0.500204609420994	34	55349629	58154733	NA	2	NA	NA	2	NA	2805104	NA	7	19	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PPP4R3C	23	27460211	27463341	FALSE	1281	0.662601706370604	72	25004702	27981233	0.364342740527346	8	NA	0.364342740527346	8	NA	2976531	NA	9	10	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	PPP4R4	14	94146128	94279735	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	26	0	FALSE	DIPLOID	PASS
659_bTo_pair	PPP5C	19	46346994	46392981	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	14	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PPP5D1	19	46480796	46601200	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	12	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PPP6C	9	125146573	125189939	TRUE	618	1.76155949971376	98	125145456	125189931	0.364342740527346	22	NA	0.364342740527346	22	NA	44475	NA	1	23	6	FALSE	AMP	PASS
659_bTo_pair	PPP6R1	19	55229780	55258995	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	22	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PPP6R2	22	50343304	50445090	FALSE	1272	-0.260847831900416	46	50286270	50731222	0.298322295679939	3	NA	0.298322295679939	3	NA	444952	NA	19	24	4	FALSE	GAIN (many states)	PASS
659_bTo_pair	PPP6R3	11	68460731	68615334	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	25	0	FALSE	GAIN	PASS
659_bTo_pair	PPRC1	10	102132994	102150331	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	28	0	FALSE	CNLOH	PASS
659_bTo_pair	PPT1	1	40071461	40097727	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	PPT2	6	32153441	32163680	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	PPT2-EGFL8	6	32153845	32171978	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	PPTC7	12	110533245	110583320	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	PPWD1	5	65563236	65587549	FALSE	323	-0.645106866010582	25	58495036	67196614	0.365165917639896	1	0	0.365165917639896	1	0	8701578	1	31	13	1	FALSE	HETLOSS	PASS
659_bTo_pair	PPY	17	43940804	43942468	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PQBP1	23	48897912	48903143	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	7	0	FALSE	AMP (many states)	PASS
659_bTo_pair	PQLC1	18	79902420	79951664	FALSE	1113	-0.883471952658051	12	75410842	80247341	0.365165917639896	1	0	0.365165917639896	1	0	4836499	1	17	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	PQLC2	1	19312326	19329300	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	PQLC2L	3	157543246	157677749	FALSE	250	-0.231905273142314	46	156829339	161250770	0.298322295679939	3	NA	0.298322295679939	3	NA	4421431	NA	26	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PQLC3	2	11155198	11178874	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	PRAC1	17	48721719	48722522	FALSE	1050	0.118579818885908	59	48530521	48770002	0.308533751035793	5	NA	0.308533751035793	5	NA	239481	NA	13	2	0	FALSE	AMP (many states)	PASS
659_bTo_pair	PRAC2	17	48723168	48724758	FALSE	1050	0.118579818885908	59	48530521	48770002	0.308533751035793	5	NA	0.308533751035793	5	NA	239481	NA	13	3	1	FALSE	AMP (many states)	PASS
659_bTo_pair	PRADC1	2	73228006	73233238	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRAF2	23	49071156	49074071	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	PRAG1	8	8317736	8386498	FALSE	512	-0.331719190506888	43	7863565	8376842	0.192136715055622	3	NA	0.192136715055622	3	NA	513277	NA	7	19	4	TRUE	GAIN (many states)	PASS
659_bTo_pair	PRAM1	19	8490056	8503112	FALSE	1132	-0.583194501817822	26	7916513	8843246	NA	2	NA	NA	2	NA	926733	NA	25	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PRAME	22	22547701	22559361	FALSE	1248	-0.440655178794865	34	21923114	22646364	NA	2	NA	NA	2	NA	723250	NA	7	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PRAMEF1	1	12791397	12796628	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRAMEF10	1	12892896	12898270	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	6	2	FALSE	DIPLOID	PASS
659_bTo_pair	PRAMEF11	1	12824605	12831410	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRAMEF12	1	12774841	12777906	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRAMEF14	1	13342034	13347134	FALSE	5	-0.657750557858816	22	13225408	13779152	0.291335969972972	1	0	0.291335969972972	1	0	553744	1	12	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	PRAMEF15	1	13315581	13322598	FALSE	5	-0.657750557858816	22	13225408	13779152	0.291335969972972	1	0	0.291335969972972	1	0	553744	1	12	2	1	FALSE	HETLOSS	PASS
659_bTo_pair	PRAMEF17	1	13389632	13392629	FALSE	5	-0.657750557858816	22	13225408	13779152	0.291335969972972	1	0	0.291335969972972	1	0	553744	1	12	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	PRAMEF18	1	13222705	13226106	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	3	3	TRUE	DIPLOID	PASS
659_bTo_pair	PRAMEF19	1	13369067	13371900	FALSE	5	-0.657750557858816	22	13225408	13779152	0.291335969972972	1	0	0.291335969972972	1	0	553744	1	12	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	PRAMEF2	1	12857086	12861909	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRAMEF20	1	13410450	13421328	FALSE	5	-0.657750557858816	22	13225408	13779152	0.291335969972972	1	0	0.291335969972972	1	0	553744	1	12	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	PRAMEF25	1	13068677	13077884	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRAMEF26	1	13148905	13155961	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRAMEF33	1	13303539	13308907	FALSE	5	-0.657750557858816	22	13225408	13779152	0.291335969972972	1	0	0.291335969972972	1	0	553744	1	12	8	3	FALSE	HETLOSS	PASS
659_bTo_pair	PRAMEF4	1	12879224	12886201	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	PRAMEF5	1	13254212	13263314	FALSE	5	-0.657750557858816	22	13225408	13779152	0.291335969972972	1	0	0.291335969972972	1	0	553744	1	12	4	2	FALSE	HETLOSS	PASS
659_bTo_pair	PRAMEF6	1	12938472	12947580	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	4	2	FALSE	DIPLOID	PASS
659_bTo_pair	PRAMEF7	1	12916610	12920482	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	PRAMEF8	1	13281035	13285174	FALSE	5	-0.657750557858816	22	13225408	13779152	0.291335969972972	1	0	0.291335969972972	1	0	553744	1	12	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	PRAMEF9	1	13172455	13179464	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	7	2	FALSE	DIPLOID	PASS
659_bTo_pair	PRAP1	10	133347146	133352683	FALSE	676	-0.612597388333807	25	132187132	133626712	0.365165917639896	1	0	0.365165917639896	1	0	1439580	1	27	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	PRB1	12	11351823	11395566	FALSE	748	0.115902835270215	57	10722867	11717834	0.334914946507217	5	2	0.334914946507217	5	2	994967	3	26	13	5	FALSE	AMP	PASS
659_bTo_pair	PRB2	12	11391540	11501041	FALSE	748	0.115902835270215	57	10722867	11717834	0.334914946507217	5	2	0.334914946507217	5	2	994967	3	26	7	2	FALSE	AMP	PASS
659_bTo_pair	PRB3	12	11265924	11269805	FALSE	748	0.115902835270215	57	10722867	11717834	0.334914946507217	5	2	0.334914946507217	5	2	994967	3	26	6	3	FALSE	AMP	PASS
659_bTo_pair	PRB4	12	11307083	11310435	FALSE	748	0.115902835270215	57	10722867	11717834	0.334914946507217	5	2	0.334914946507217	5	2	994967	3	26	5	2	FALSE	AMP	PASS
659_bTo_pair	PRC1	15	90966038	90995629	FALSE	929	-0.700679172673924	22	90876261	92655591	0.291335969972972	1	0	0.291335969972972	1	0	1779330	1	13	15	3	FALSE	HETLOSS	PASS
659_bTo_pair	PRCC	1	156750610	156800817	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRCD	17	76527586	76553578	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	PRCP	11	82823502	82970584	FALSE	712	-0.188800010767045	48	77590086	86068715	0.365165917639896	3	NA	0.365165917639896	3	NA	8478629	NA	30	24	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	PRDM1	6	106086320	106109939	TRUE	412	2.19797647779824	108	106086516	106115043	0.364342740527346	31	NA	0.364342740527346	31	NA	28527	NA	2	28	2	FALSE	AMP	PASS
659_bTo_pair	PRDM10	11	129899706	130002835	FALSE	734	-0.516486951202814	27	128842412	134387591	1	2	1	1	2	1	5545179	1	27	24	4	FALSE	DIPLOID	PASS
659_bTo_pair	PRDM11	11	45095806	45235110	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRDM12	9	130664594	130682981	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	PRDM13	6	99606730	99615578	FALSE	411	-0.455063723695114	34	95586870	106069771	NA	2	NA	NA	2	NA	10482901	NA	27	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PRDM14	8	70051651	70071693	FALSE	553	-0.248188717260806	46	68331252	73878866	0.298322295679939	3	NA	0.298322295679939	3	NA	5547614	NA	20	10	3	FALSE	GAIN (many states)	PASS
659_bTo_pair	PRDM15	21	41798225	41879482	FALSE	1234	-0.544212636077936	27	41740855	44141314	1	2	1	1	2	1	2400459	1	31	36	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRDM16	1	3069168	3438621	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	25	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRDM2	1	13700198	13825079	FALSE	5	-0.657750557858816	22	13225408	13779152	0.291335969972972	1	0	0.291335969972972	1	0	553744	1	12	27	1	TRUE	HETLOSS	PASS
659_bTo_pair	PRDM4	12	107732866	107761272	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRDM5	4	120684919	120922870	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRDM6	5	123089121	123194266	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	PRDM7	16	90056566	90092072	FALSE	995	-0.522225769981002	29	89949539	90075863	NA	2	NA	NA	2	NA	126324	NA	5	12	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PRDM8	4	80183879	80204329	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	9	0	TRUE	DIPLOID	PASS
659_bTo_pair	PRDM9	5	23443586	23528597	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	16	1	TRUE	GAIN	PASS
659_bTo_pair	PRDX1	1	45511036	45523047	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRDX2	19	12796820	12801859	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRDX3	10	119167703	119178833	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	7	0	FALSE	CNLOH	PASS
659_bTo_pair	PRDX4	23	23664262	23686399	FALSE	1278	-0.021616497728569	55	20155391	23935235	0.328696605851359	4	NA	0.328696605851359	4	NA	3779844	NA	16	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PRDX5	11	64318088	64321811	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PRDX6	1	173477266	173488807	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	PREB	2	27130756	27134675	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRELID1	5	177303774	177306959	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	PRELID2	5	145471799	145835369	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	PRELID3A	18	12407896	12432238	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	6	0	FALSE	GAIN	PASS
659_bTo_pair	PRELID3B	20	59033145	59042909	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRELP	1	203475828	203491352	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	PREP	6	105277565	105403084	FALSE	411	-0.455063723695114	34	95586870	106069771	NA	2	NA	NA	2	NA	10482901	NA	27	16	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PREPL	2	44316281	44361862	FALSE	106	-0.392858868113437	39	42335725	46184779	NA	2	NA	NA	2	NA	3849054	NA	22	17	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PREX1	20	48624252	48827883	FALSE	1216	-0.465272765977354	30	47658376	50278257	1	2	1	1	2	1	2619881	1	18	44	9	FALSE	DIPLOID	PASS
659_bTo_pair	PREX2	8	67952118	68237030	FALSE	551	0.805694933001719	75	67952271	68224605	0.364342740527346	10	NA	0.364342740527346	10	NA	272334	NA	1	65	3	TRUE	AMP	PASS
659_bTo_pair	PRF1	10	70597348	70602775	FALSE	651	-0.523280686314431	28	68722553	70760843	0.351300687168522	2	0	0.351300687168522	2	0	2038290	2	27	8	0	FALSE	CNLOH	PASS
659_bTo_pair	PRG2	11	57386794	57390657	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	6	0	FALSE	GAIN	PASS
659_bTo_pair	PRG3	11	57376769	57381150	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	6	0	FALSE	GAIN	PASS
659_bTo_pair	PRG4	1	186296279	186314562	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	24	3	FALSE	DIPLOID	PASS
659_bTo_pair	PRH1	12	10824960	11171608	FALSE	748	0.115902835270215	57	10722867	11717834	0.334914946507217	5	2	0.334914946507217	5	2	994967	3	26	57	23	FALSE	AMP	PASS
659_bTo_pair	PRH1-PRR4	12	10845849	11171600	FALSE	748	0.115902835270215	57	10722867	11717834	0.334914946507217	5	2	0.334914946507217	5	2	994967	3	26	53	23	FALSE	AMP	PASS
659_bTo_pair	PRH2	12	10929236	10932341	FALSE	748	0.115902835270215	57	10722867	11717834	0.334914946507217	5	2	0.334914946507217	5	2	994967	3	26	4	0	FALSE	AMP	PASS
659_bTo_pair	PRICKLE1	12	42456757	42590355	FALSE	764	-0.478463991093384	34	40959192	45805435	NA	2	NA	NA	2	NA	4846243	NA	16	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PRICKLE2	3	64092242	64445476	FALSE	228	-0.860828429618822	13	64010871	69385924	0.365165917639896	1	0	0.365165917639896	1	0	5375053	1	16	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	PRICKLE3	23	49175264	49186528	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	13	0	FALSE	AMP (many states)	PASS
659_bTo_pair	PRICKLE4	6	41780762	41787372	FALSE	399	-0.575359055127692	26	41736131	41931766	NA	2	NA	NA	2	NA	195635	NA	9	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PRIM1	12	56731596	56752373	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	13	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PRIM2	6	57314805	57646849	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	PRIMA1	14	93718298	93788481	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	PRIMPOL	4	184649613	184694963	FALSE	305	-0.853036814117495	12	184629284	186555336	0.365165917639896	1	0	0.365165917639896	1	0	1926052	1	22	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	PRKAA1	5	40759379	40798374	FALSE	316	-0.143574193475256	49	39021030	43704252	0.365165917639896	3	1	0.365165917639896	3	1	4683222	2	28	14	0	FALSE	GAIN	PASS
659_bTo_pair	PRKAA2	1	56645322	56715335	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	PRKAB1	12	119667753	119681630	FALSE	808	-0.531025796359709	27	115966146	120090026	1	2	1	1	2	1	4123880	1	23	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRKAB2	1	147155106	147172550	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRKACA	19	14091688	14118084	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	12	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PRKACB	1	84078062	84238498	FALSE	27	-0.365760579101575	39	77969065	85252731	NA	2	NA	NA	2	NA	7283666	NA	23	19	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PRKACG	9	69012529	69014113	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRKAG1	12	49002274	49018825	FALSE	768	-0.491963868457131	34	48045387	49018767	NA	2	NA	NA	2	NA	973380	NA	28	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PRKAG2	7	151556111	151877125	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	21	2	FALSE	HETLOSS	PASS
659_bTo_pair	PRKAG3	2	218822383	218832086	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	PRKAR1A	17	68511780	68551319	FALSE	1071	1.92181097223419	101	68512102	68533197	0.364342740527346	25	NA	0.364342740527346	25	NA	21095	NA	1	45	6	TRUE	AMP	PASS
659_bTo_pair	PRKAR1B	7	549197	727650	FALSE	450	-0.329551508654045	40	193185	2379492	0.308149309490068	3	1	0.308149309490068	3	1	2186307	2	26	14	1	FALSE	GAIN	PASS
659_bTo_pair	PRKAR2A	3	48744597	48847846	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	PRKAR2B	7	107044649	107161811	FALSE	487	1.90667166698194	101	106248413	107045195	0.364342740527346	25	NA	0.364342740527346	25	NA	796782	NA	4	12	1	TRUE	AMP	PASS
659_bTo_pair	PRKCA	17	66302636	66810743	FALSE	1070	-0.476939588153593	30	65635933	68457397	1	2	1	1	2	1	2821464	1	18	17	2	FALSE	DIPLOID	PASS
659_bTo_pair	PRKCB	16	23835946	24220611	FALSE	960	-0.449512584299377	34	23658521	27234165	NA	2	NA	NA	2	NA	3575644	NA	16	18	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PRKCD	3	53156009	53192717	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	PRKCE	2	45651345	46187990	FALSE	106	-0.392858868113437	39	42335725	46184779	NA	2	NA	NA	2	NA	3849054	NA	22	16	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PRKCG	19	53879190	53907652	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	19	1	FALSE	DIPLOID	PASS
659_bTo_pair	PRKCH	14	61187559	61550976	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	20	1	FALSE	DIPLOID	PASS
659_bTo_pair	PRKCI	3	170222365	170305981	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	28	0	FALSE	GAIN	PASS
659_bTo_pair	PRKCQ	10	6427143	6580301	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	17	0	FALSE	CNLOH	PASS
659_bTo_pair	PRKCSH	19	11435288	11450968	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRKCZ	1	2050470	2185395	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRKD1	14	29576479	30191898	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	23	1	FALSE	DIPLOID	PASS
659_bTo_pair	PRKD2	19	46674275	46717127	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	21	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PRKD3	2	37250502	37324808	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	20	3	FALSE	DIPLOID	PASS
659_bTo_pair	PRKDC	8	47773108	47960183	FALSE	542	0.757621520920055	74	47737305	47962299	0.364342740527346	9	NA	0.364342740527346	9	NA	224994	NA	3	92	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	PRKG1	10	50990891	52298350	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	28	2	FALSE	CNLOH	PASS
659_bTo_pair	PRKG2	4	81087370	81215117	FALSE	289	-0.397475195823872	39	80335777	83458331	NA	2	NA	NA	2	NA	3122554	NA	19	19	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PRKN	6	161347420	162727771	TRUE	445	0.567075882616504	69	160991940	163563366	0.364342740527346	8	NA	0.364342740527346	8	NA	2571426	NA	5	39	5	FALSE	INDETERMINATE	PASS
659_bTo_pair	PRKRA	2	178431414	178451512	FALSE	155	-0.524315670340053	27	177420364	181062892	1	2	1	1	2	1	3642528	1	16	8	4	FALSE	DIPLOID	PASS
659_bTo_pair	PRKRIP1	7	102363872	102426676	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRKX	23	3604370	3713608	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	9	1	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	PRL	6	22287244	22297501	FALSE	372	-0.417452461149977	39	20546469	24145837	NA	2	NA	NA	2	NA	3599368	NA	5	5	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PRLH	2	237566574	237567175	FALSE	190	-0.691419458816616	21	236392006	238848635	0.140309795179477	0	0	0.140309795179477	0	0	2456629	0	22	1	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PRLHR	10	118589989	118595699	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	5	0	FALSE	CNLOH	PASS
659_bTo_pair	PRLR	5	35048756	35230589	FALSE	312	-0.206081392785099	47	24487677	35857105	0.365165917639896	3	1	0.365165917639896	3	1	11369428	2	27	12	0	FALSE	GAIN	PASS
659_bTo_pair	PRM1	16	11280836	11281350	FALSE	953	0.745805771431006	74	11178388	11281274	0.364342740527346	9	NA	0.364342740527346	9	NA	102886	NA	7	2	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	PRM2	16	11275639	11276480	FALSE	953	0.745805771431006	74	11178388	11281274	0.364342740527346	9	NA	0.364342740527346	9	NA	102886	NA	7	3	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	PRM3	16	11273218	11273641	FALSE	953	0.745805771431006	74	11178388	11281274	0.364342740527346	9	NA	0.364342740527346	9	NA	102886	NA	7	2	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	PRMT1	19	49675786	49689029	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	PRMT2	21	46635167	46665124	FALSE	1239	-0.568555801579827	23	44960223	46664365	0.186356639256811	1	0	0.186356639256811	1	0	1704142	1	18	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	PRMT3	11	20387530	20509294	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	17	1	FALSE	DIPLOID	PASS
659_bTo_pair	PRMT5	14	22920511	22929585	FALSE	850	-0.604709518345526	26	22902059	23302562	NA	2	NA	NA	2	NA	400503	NA	18	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PRMT6	1	107056679	107067636	FALSE	32	-0.441874489475641	34	100273343	107324874	NA	2	NA	NA	2	NA	7051531	NA	18	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PRMT7	16	68310974	68358563	FALSE	979	-0.429457644119204	34	67645299	68698317	NA	2	NA	NA	2	NA	1053018	NA	33	18	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PRMT8	12	3381349	3593973	FALSE	739	-0.369471841682825	39	1104785	3873202	NA	2	NA	NA	2	NA	2768417	NA	20	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PRMT9	4	147637785	147684230	FALSE	300	-0.423460920061428	34	143186078	151174790	NA	2	NA	NA	2	NA	7988712	NA	32	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PRND	20	4721910	4728460	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	3	1	FALSE	HETLOSS	PASS
659_bTo_pair	PRNP	20	4686236	4701590	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	PROB1	5	139390592	139395713	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	11	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PROC	2	127418427	127429246	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	PROCA1	17	28703197	28711854	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	PROCR	20	35172073	35216240	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRODH	22	18912777	18936553	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	1	0	FALSE	CNLOH	PASS
659_bTo_pair	PRODH2	19	35799988	35813299	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	PROK1	1	110451200	110457354	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	PROK2	3	71771656	71785206	FALSE	230	-1.02914185439516	8	71684725	71785057	0.342391532111247	0	0	0.342391532111247	0	0	100332	0	4	4	0	FALSE	HOMDEL	PASS
659_bTo_pair	PROKR1	2	68643589	68658247	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	5	2	FALSE	DIPLOID	PASS
659_bTo_pair	PROKR2	20	5302040	5314369	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	PROM1	4	15963076	16084378	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	28	2	FALSE	GAIN	PASS
659_bTo_pair	PROM2	2	95274453	95291308	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	24	2	FALSE	DIPLOID	PASS
659_bTo_pair	PROP1	5	177992235	177996242	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	PROS1	3	93873033	93980003	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	17	1	FALSE	GAIN	PASS
659_bTo_pair	PROSER1	13	39009866	39038076	FALSE	830	-0.745621963362667	19	32401848	39788354	0.365165917639896	1	0	0.365165917639896	1	0	7386506	1	30	20	1	FALSE	HETLOSS	PASS
659_bTo_pair	PROSER2	10	11823339	11872277	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	7	0	FALSE	CNLOH	PASS
659_bTo_pair	PROSER3	19	35758143	35771028	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	12	3	FALSE	HETLOSS	PASS
659_bTo_pair	PROX1	1	213983181	214041502	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	PROX2	14	74852871	74871940	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	PROZ	13	113158654	113172383	FALSE	844	-0.576217954819194	24	110150427	113263496	0.359751661895656	2	0	0.359751661895656	2	0	3113069	2	19	10	1	FALSE	CNLOH	PASS
659_bTo_pair	PRPF18	10	13586927	13630868	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	10	1	FALSE	CNLOH	PASS
659_bTo_pair	PRPF19	11	60890730	60906588	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	16	3	FALSE	GAIN	PASS
659_bTo_pair	PRPF3	1	150321476	150353195	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRPF31	19	54115410	54131719	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRPF38A	1	52404564	52420839	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRPF38B	1	108692323	108701803	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	PRPF39	14	45084099	45116282	FALSE	858	-0.388807455224718	39	37680254	45134449	NA	2	NA	NA	2	NA	7454195	NA	16	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PRPF4	9	113275343	113292905	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	PRPF40A	2	152651593	152717997	FALSE	149	-0.454179855872301	30	147845197	157628657	1	2	1	1	2	1	9783460	1	30	26	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRPF40B	12	49568218	49644666	FALSE	770	-0.500134310902258	34	49065087	50081631	NA	2	NA	NA	2	NA	1016544	NA	25	40	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PRPF4B	6	4021267	4064983	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	19	1	FALSE	DIPLOID	PASS
659_bTo_pair	PRPF6	20	63981135	64033100	FALSE	1225	-0.32421417626258	43	63733191	64273510	0.192136715055622	3	NA	0.192136715055622	3	NA	540319	NA	22	22	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	PRPF8	17	1650629	1684882	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	45	1	FALSE	HETLOSS	PASS
659_bTo_pair	PRPH	12	49293252	49298686	FALSE	770	-0.500134310902258	34	49065087	50081631	NA	2	NA	NA	2	NA	1016544	NA	25	11	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PRPH2	6	42696600	42722574	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRPS1	23	107628424	107651026	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	7	0	FALSE	AMP (many states)	PASS
659_bTo_pair	PRPS1L1	7	18026774	18027863	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	4	0	FALSE	GAIN	PASS
659_bTo_pair	PRPS2	23	12791355	12824222	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	7	1	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	PRPSAP1	17	76309486	76384521	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	PRPSAP2	17	18840085	18931287	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	12	2	FALSE	CNLOH	PASS
659_bTo_pair	PRR11	17	59155499	59204705	FALSE	1058	-0.423419268198233	34	58422367	59890994	NA	2	NA	NA	2	NA	1468627	NA	20	10	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PRR12	19	49591643	49626439	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	30	0	FALSE	HETLOSS	PASS
659_bTo_pair	PRR13	12	53441605	53446645	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRR14	16	30650717	30656440	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRR14L	22	31676256	31750140	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	30	5	FALSE	CNLOH	PASS
659_bTo_pair	PRR15	7	29563811	29567295	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	2	0	FALSE	GAIN	PASS
659_bTo_pair	PRR15L	17	47951967	47957878	FALSE	1049	-0.703360644300681	22	47810585	48529853	0.291335969972972	1	0	0.291335969972972	1	0	719268	1	15	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	PRR16	5	120464278	120687332	FALSE	331	-0.706980197323045	20	112861366	122075379	0.365165917639896	1	0	0.365165917639896	1	0	9214013	1	31	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	PRR18	6	166305300	166308448	FALSE	447	-0.721809212356928	19	165280135	167033904	0.365165917639896	1	0	0.365165917639896	1	0	1753769	1	11	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	PRR19	19	42302098	42310821	FALSE	1179	-0.582084941516902	26	42297317	43535595	NA	2	NA	NA	2	NA	1238278	NA	25	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PRR22	19	5782960	5784765	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	7	3	FALSE	DIPLOID	PASS
659_bTo_pair	PRR23A	3	139005468	139006268	FALSE	245	0.794201723555962	75	138633038	139044349	0.364342740527346	10	NA	0.364342740527346	10	NA	411311	NA	8	4	0	FALSE	AMP	PASS
659_bTo_pair	PRR23B	3	139019031	139020926	FALSE	245	0.794201723555962	75	138633038	139044349	0.364342740527346	10	NA	0.364342740527346	10	NA	411311	NA	8	4	0	FALSE	AMP	PASS
659_bTo_pair	PRR23C	3	139042102	139044892	FALSE	245	0.794201723555962	75	138633038	139044349	0.364342740527346	10	NA	0.364342740527346	10	NA	411311	NA	8	3	0	FALSE	AMP	PASS
659_bTo_pair	PRR23D1	8	7539628	7542450	FALSE	510	-0.906181747703467	12	166288	7823395	0.365165917639896	1	0	0.365165917639896	1	0	7657107	1	48	2	2	FALSE	HETLOSS	PASS
659_bTo_pair	PRR23D2	8	7778591	7781413	FALSE	510	-0.906181747703467	12	166288	7823395	0.365165917639896	1	0	0.365165917639896	1	0	7657107	1	48	1	0	FALSE	HETLOSS	PASS
659_bTo_pair	PRR26	10	649948	669581	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	7	0	FALSE	CNLOH	PASS
659_bTo_pair	PRR27	4	70133616	70176799	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRR29	17	63998351	64004304	FALSE	1066	-0.447707994366894	34	63941413	64859452	NA	2	NA	NA	2	NA	918039	NA	12	11	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PRR3	6	30556886	30563723	FALSE	379	-0.524744136561063	27	30546321	31270541	1	2	1	1	2	1	724220	1	30	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	PRR30	2	27136848	27139410	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRR32	23	126819764	126821786	FALSE	1333	-0.260466887002759	46	126819804	129920771	0.298322295679939	3	NA	0.298322295679939	3	NA	3100967	NA	9	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PRR34	22	46049478	46054144	FALSE	1271	-0.350898193716427	41	45922979	50285791	0.284729887459054	3	0	0.284729887459054	3	0	4362812	3	30	2	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	PRR35	16	560422	565528	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	8	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PRR36	19	7868719	7874379	FALSE	1130	-0.690953718254595	21	7440128	7870576	0.140309795179477	0	0	0.140309795179477	0	0	430448	0	25	16	2	TRUE	HOMDEL	suppress_large_homdel
659_bTo_pair	PRR4	12	10845849	10849475	FALSE	748	0.115902835270215	57	10722867	11717834	0.334914946507217	5	2	0.334914946507217	5	2	994967	3	26	5	1	FALSE	AMP	PASS
659_bTo_pair	PRR5	22	44668547	44737681	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	11	2	FALSE	CNLOH	PASS
659_bTo_pair	PRR5-ARHGAP8	22	44702233	44862706	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	22	3	FALSE	CNLOH	PASS
659_bTo_pair	PRR5L	11	36296288	36465204	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	PRR7	5	177446445	177456286	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	PRR9	1	153217584	153219317	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRRC1	5	127517609	127555089	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	PRRC2A	6	31620720	31637771	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	41	3	FALSE	HETLOSS	PASS
659_bTo_pair	PRRC2B	9	131373636	131500197	FALSE	625	-0.794391185935477	14	131261330	132889947	0.365165917639896	1	0	0.365165917639896	1	0	1628617	1	17	42	2	FALSE	HETLOSS	PASS
659_bTo_pair	PRRC2C	1	171485551	171593511	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	48	4	FALSE	DIPLOID	PASS
659_bTo_pair	PRRG1	23	37349275	37457295	FALSE	1285	0.80616134695852	75	36379429	37572383	0.364342740527346	10	NA	0.364342740527346	10	NA	1192954	NA	5	5	0	FALSE	AMP	PASS
659_bTo_pair	PRRG2	19	49580646	49591015	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	PRRG3	23	151695124	151705924	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	5	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	PRRG4	11	32829943	32858123	FALSE	692	-0.391103687852083	35	32583952	33774394	1	2	1	1	2	1	1190442	1	13	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	PRRT1	6	32148359	32153083	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	PRRT2	16	29811382	29815892	FALSE	965	-0.735005669796309	19	28989573	29982749	0.365165917639896	1	0	0.365165917639896	1	0	993176	1	25	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	PRRT3	3	9945542	9952394	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	PRRT4	7	128350325	128361685	FALSE	492	-0.463656181520944	30	126439208	129166764	1	2	1	1	2	1	2727556	1	27	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	PRRX1	1	170662728	170739419	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRRX2	9	129665641	129722674	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	PRSS1	7	142749468	142753076	FALSE	501	-0.513243901966068	29	142219948	142940594	NA	2	NA	NA	2	NA	720646	NA	9	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PRSS12	4	118280038	118353003	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	17	1	FALSE	DIPLOID	PASS
659_bTo_pair	PRSS16	6	27247701	27256624	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRSS2	7	142760398	142774564	FALSE	501	-0.513243901966068	29	142219948	142940594	NA	2	NA	NA	2	NA	720646	NA	9	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PRSS21	16	2817180	2826304	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	PRSS22	16	2852727	2858170	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	PRSS23	11	86791059	86952910	FALSE	714	-0.230278951577934	46	86306357	90211282	0.298322295679939	3	NA	0.298322295679939	3	NA	3904925	NA	21	13	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PRSS27	16	2712418	2720551	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	PRSS3	9	33750466	33799231	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	9	1	FALSE	CNLOH	PASS
659_bTo_pair	PRSS33	16	2783953	2787948	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	PRSS35	6	83512538	83525704	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRSS36	16	31138925	31150094	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	19	1	FALSE	DIPLOID	PASS
659_bTo_pair	PRSS37	7	141836286	141841487	FALSE	500	-0.745042700177313	19	140929950	142218464	0.365165917639896	1	0	0.365165917639896	1	0	1288514	1	15	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	PRSS38	1	227815693	227846470	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	PRSS41	16	2798485	2805302	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	PRSS42	3	46829542	46834095	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	PRSS45	3	46742092	46744755	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	PRSS48	4	151277171	151291453	FALSE	301	-0.768516841937588	19	151174942	151760928	0.365165917639896	1	0	0.365165917639896	1	0	585986	1	4	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	PRSS50	3	46712115	46812574	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	19	6	FALSE	HETLOSS	PASS
659_bTo_pair	PRSS51	8	10482878	10547585	FALSE	515	-0.798201426688095	16	9008002	10611590	0.365165917639896	1	0	0.365165917639896	1	0	1603588	1	7	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	PRSS53	16	31083425	31089628	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	13	2	FALSE	DIPLOID	PASS
659_bTo_pair	PRSS54	16	58279997	58295047	FALSE	972	-0.499158643645776	34	57931773	64947842	NA	2	NA	NA	2	NA	7016069	NA	18	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PRSS55	8	10525546	10554166	FALSE	515	-0.798201426688095	16	9008002	10611590	0.365165917639896	1	0	0.365165917639896	1	0	1603588	1	7	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	PRSS56	2	232520463	232525716	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	14	2	FALSE	DIPLOID	PASS
659_bTo_pair	PRSS57	19	685546	695498	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PRSS58	7	142252143	142258058	FALSE	501	-0.513243901966068	29	142219948	142940594	NA	2	NA	NA	2	NA	720646	NA	9	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PRSS8	16	31131433	31135762	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRTFDC1	10	24848607	24952604	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	9	0	FALSE	CNLOH	PASS
659_bTo_pair	PRTG	15	55611546	55743090	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	23	3	FALSE	HETLOSS	PASS
659_bTo_pair	PRTN3	19	840960	848175	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	7	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PRUNE1	1	151008420	151035713	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	PRUNE2	9	76611376	76906087	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	50	6	FALSE	DIPLOID	PASS
659_bTo_pair	PRX	19	40393768	40413366	FALSE	1173	-0.760690164248215	19	40322104	40807873	0.365165917639896	1	0	0.365165917639896	1	0	485769	1	21	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	PRXL2A	10	80407829	80437115	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	6	0	FALSE	CNLOH	PASS
659_bTo_pair	PRXL2B	1	2586491	2591469	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	PRXL2C	9	96639577	96655303	FALSE	608	-0.541405085979946	27	95522076	99069752	1	2	1	1	2	1	3547676	1	31	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	PSAP	10	71816298	71851375	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	15	2	FALSE	CNLOH	PASS
659_bTo_pair	PSAPL1	4	7430294	7434973	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	6	0	FALSE	GAIN	PASS
659_bTo_pair	PSAT1	9	78297143	78330093	FALSE	598	-0.546497547865564	29	78236395	83956411	NA	2	NA	NA	2	NA	5720016	NA	14	9	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PSCA	8	142670308	142682724	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	3	2	FALSE	DIPLOID	PASS
659_bTo_pair	PSD	10	102402617	102421539	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	22	0	FALSE	CNLOH	PASS
659_bTo_pair	PSD2	5	139795821	139844466	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	18	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PSD3	8	18527301	19084730	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	PSD4	2	113157325	113209396	FALSE	138	-0.423459519967032	34	112060069	113201423	NA	2	NA	NA	2	NA	1141354	NA	21	23	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PSEN1	14	73136418	73223691	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	PSEN2	1	226870184	226896105	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	PSENEN	19	35745114	35747519	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	PSG1	19	42866464	42879822	FALSE	1179	-0.582084941516902	26	42297317	43535595	NA	2	NA	NA	2	NA	1238278	NA	25	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PSG11	19	43007656	43026512	FALSE	1179	-0.582084941516902	26	42297317	43535595	NA	2	NA	NA	2	NA	1238278	NA	25	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PSG2	19	43064211	43083045	FALSE	1179	-0.582084941516902	26	42297317	43535595	NA	2	NA	NA	2	NA	1238278	NA	25	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PSG3	19	42721638	42740569	FALSE	1179	-0.582084941516902	26	42297317	43535595	NA	2	NA	NA	2	NA	1238278	NA	25	9	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PSG4	19	43192702	43207299	FALSE	1179	-0.582084941516902	26	42297317	43535595	NA	2	NA	NA	2	NA	1238278	NA	25	5	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PSG5	19	43166256	43186536	FALSE	1179	-0.582084941516902	26	42297317	43535595	NA	2	NA	NA	2	NA	1238278	NA	25	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PSG6	19	42902079	42919563	FALSE	1179	-0.582084941516902	26	42297317	43535595	NA	2	NA	NA	2	NA	1238278	NA	25	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PSG7	19	42924132	42937178	FALSE	1179	-0.582084941516902	26	42297317	43535595	NA	2	NA	NA	2	NA	1238278	NA	25	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PSG8	19	42752686	42855691	FALSE	1179	-0.582084941516902	26	42297317	43535595	NA	2	NA	NA	2	NA	1238278	NA	25	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PSG9	19	43211791	43269530	FALSE	1179	-0.582084941516902	26	42297317	43535595	NA	2	NA	NA	2	NA	1238278	NA	25	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PSIP1	9	15464066	15511019	FALSE	581	-0.746183084602222	19	10618009	19786745	0.365165917639896	1	0	0.365165917639896	1	0	9168736	1	24	16	1	FALSE	HETLOSS	PASS
659_bTo_pair	PSKH1	16	67893272	67929678	FALSE	979	-0.429457644119204	34	67645299	68698317	NA	2	NA	NA	2	NA	1053018	NA	33	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PSKH2	8	86048373	86088621	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	6	0	FALSE	GAIN	PASS
659_bTo_pair	PSMA1	11	14504874	14643635	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	PSMA2	7	42916857	42932223	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	8	0	FALSE	GAIN	PASS
659_bTo_pair	PSMA3	14	58244831	58272012	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	PSMA4	15	78540405	78552419	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	PSMA5	1	109399031	109426427	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	PSMA6	14	35278633	35317493	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	PSMA7	20	62136735	62143440	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	PSMA8	18	26133852	26193355	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	8	0	FALSE	GAIN	PASS
659_bTo_pair	PSMB1	6	170535117	170553341	FALSE	449	-0.520973998932362	27	167374374	170584540	1	2	1	1	2	1	3210166	1	18	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	PSMB10	16	67934502	67937087	FALSE	979	-0.429457644119204	34	67645299	68698317	NA	2	NA	NA	2	NA	1053018	NA	33	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PSMB11	14	23042167	23044276	FALSE	850	-0.604709518345526	26	22902059	23302562	NA	2	NA	NA	2	NA	400503	NA	18	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PSMB2	1	35599544	35641844	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	PSMB3	17	38752736	38764231	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PSMB4	1	151399534	151401944	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	PSMB5	14	23016543	23035230	FALSE	850	-0.604709518345526	26	22902059	23302562	NA	2	NA	NA	2	NA	400503	NA	18	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PSMB6	17	4796144	4798503	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	PSMB7	9	124353466	124415444	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	PSMB8	6	32840717	32844703	FALSE	385	-0.53324371793928	29	32822341	32859522	NA	2	NA	NA	2	NA	37181	NA	5	8	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PSMB9	6	32844136	32859585	FALSE	385	-0.53324371793928	29	32822341	32859522	NA	2	NA	NA	2	NA	37181	NA	5	22	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PSMC1	14	90256495	90275429	FALSE	870	-0.471399657488227	30	81180359	92000019	1	2	1	1	2	1	10819660	1	29	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	PSMC2	7	103344254	103369395	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	PSMC3	11	47418769	47426473	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	PSMC3IP	17	42572315	42577831	FALSE	1038	-0.623371137159426	26	42404937	42698887	NA	2	NA	NA	2	NA	293950	NA	13	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PSMC4	19	39971005	39981441	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	11	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PSMC5	17	63827152	63832026	FALSE	1064	-0.419094292936043	39	61867575	63873599	NA	2	NA	NA	2	NA	2006024	NA	24	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PSMC6	14	52707172	52728587	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	PSMD1	2	231056864	231172827	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	32	2	FALSE	DIPLOID	PASS
659_bTo_pair	PSMD10	23	108084207	108091618	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	PSMD11	17	32444261	32483318	FALSE	1022	-0.670211431189836	22	32030679	35026358	0.291335969972972	1	0	0.291335969972972	1	0	2995679	1	23	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	PSMD12	17	67337916	67366627	FALSE	1070	-0.476939588153593	30	65635933	68457397	1	2	1	1	2	1	2821464	1	18	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	PSMD13	11	236546	252984	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	12	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PSMD14	2	161308038	161411717	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	PSMD2	3	184298709	184309054	FALSE	259	-0.260370931250901	44	183654025	185254015	0.345317016959666	3	1	0.345317016959666	3	1	1599990	2	31	22	0	FALSE	GAIN	PASS
659_bTo_pair	PSMD3	17	39980797	39997960	FALSE	1030	-0.735138103765796	19	39868404	40278196	0.365165917639896	1	0	0.365165917639896	1	0	409792	1	14	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	PSMD4	1	151254703	151267479	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	10	2	FALSE	DIPLOID	PASS
659_bTo_pair	PSMD5	9	120815496	120842984	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	11	2	FALSE	DIPLOID	PASS
659_bTo_pair	PSMD6	3	64010549	64024010	FALSE	228	-0.860828429618822	13	64010871	69385924	0.365165917639896	1	0	0.365165917639896	1	0	5375053	1	16	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	PSMD7	16	74296775	74306288	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	PSMD8	19	38374536	38383824	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	PSMD9	12	121888731	121918297	FALSE	814	-0.652137007233431	22	121849022	122019673	0.291335969972972	1	0	0.291335969972972	1	0	170651	1	5	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	PSME1	14	24136158	24138967	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	PSME2	14	24143362	24147570	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	PSME3	17	42824385	42843758	FALSE	1040	-0.646197503395479	26	42761348	43039396	NA	2	NA	NA	2	NA	278048	NA	18	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PSME4	2	53864067	53970840	FALSE	110	-0.435434252584523	30	48441014	54599245	1	2	1	1	2	1	6158231	1	18	48	9	FALSE	DIPLOID	PASS
659_bTo_pair	PSMF1	20	1113263	1189415	FALSE	1195	-0.60512265366003	23	87765	1537211	0.186356639256811	1	0	0.186356639256811	1	0	1449446	1	33	11	2	FALSE	HETLOSS	PASS
659_bTo_pair	PSMG1	21	39174769	39183851	FALSE	1230	-0.572411047461507	26	38805300	41452836	NA	2	NA	NA	2	NA	2647536	NA	17	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PSMG2	18	12658043	12725740	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	21	1	FALSE	GAIN	PASS
659_bTo_pair	PSMG3	7	1567330	1571005	FALSE	450	-0.329551508654045	40	193185	2379492	0.308149309490068	3	1	0.308149309490068	3	1	2186307	2	26	2	0	FALSE	GAIN	PASS
659_bTo_pair	PSMG4	6	3231403	3303373	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	11	2	FALSE	DIPLOID	PASS
659_bTo_pair	PSORS1C1	6	31114750	31140092	FALSE	379	-0.524744136561063	27	30546321	31270541	1	2	1	1	2	1	724220	1	30	15	5	FALSE	DIPLOID	PASS
659_bTo_pair	PSORS1C2	6	31137536	31139350	FALSE	379	-0.524744136561063	27	30546321	31270541	1	2	1	1	2	1	724220	1	30	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	PSPC1	13	19674752	19783019	FALSE	819	-0.883807164728579	13	19173884	20902691	0.365165917639896	1	0	0.365165917639896	1	0	1728807	1	14	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	PSPH	7	56011051	56051604	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	5	2	FALSE	DIPLOID	PASS
659_bTo_pair	PSPN	19	6375148	6379058	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	PSRC1	1	109279556	109283186	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	PSTK	10	122954381	122997513	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	13	0	FALSE	CNLOH	PASS
659_bTo_pair	PSTPIP1	15	76993359	77037332	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	PSTPIP2	18	45983536	46072272	FALSE	1100	-0.758401070483502	19	45624783	47803983	0.365165917639896	1	0	0.365165917639896	1	0	2179200	1	22	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	PTAFR	1	28147166	28193936	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	PTAR1	9	69709522	69759959	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	PTBP1	19	797075	812327	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	15	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PTBP2	1	96721665	96823738	FALSE	31	-0.34979279123772	43	94820443	100270584	0.192136715055622	3	NA	0.192136715055622	3	NA	5450141	NA	22	15	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	PTBP3	9	112217716	112333667	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	PTCD1	7	99416739	99466163	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	24	0	FALSE	HETLOSS	PASS
659_bTo_pair	PTCD2	5	72320367	72368395	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	PTCD3	2	86106182	86142157	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	24	3	FALSE	DIPLOID	PASS
659_bTo_pair	PTCH1	9	95442980	95517057	TRUE	607	1.02174252972905	79	95099042	95517036	0.364342740527346	12	6	0.364342740527346	12	6	417994	6	2	61	9	FALSE	AMP	PASS
659_bTo_pair	PTCH2	1	44819844	44843063	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	27	3	FALSE	DIPLOID	PASS
659_bTo_pair	PTCHD1	23	23334016	23404372	FALSE	1278	-0.021616497728569	55	20155391	23935235	0.328696605851359	4	NA	0.328696605851359	4	NA	3779844	NA	16	12	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	PTCHD4	6	47878028	48068689	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	PTCRA	6	42915989	42925835	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	PTDSS1	8	96261715	96336995	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	13	0	FALSE	GAIN	PASS
659_bTo_pair	PTDSS2	11	448268	491399	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	13	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PTEN	10	87863113	87971930	TRUE	657	2.40016982594458	112	87862640	87977003	0.364342740527346	36	NA	0.364342740527346	36	NA	114363	NA	2	50	0	FALSE	AMP	PASS
659_bTo_pair	PTER	10	16436943	16513745	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	6	0	FALSE	CNLOH	PASS
659_bTo_pair	PTF1A	10	23192327	23194252	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	5	0	FALSE	CNLOH	PASS
659_bTo_pair	PTGDR	14	52267713	52276724	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	PTGDR2	11	60850940	60855971	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	5	1	FALSE	GAIN	PASS
659_bTo_pair	PTGDS	9	136975092	136981742	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	PTGER1	19	14472466	14475362	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PTGER2	14	52314305	52328606	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	PTGER3	1	70852353	71047808	FALSE	23	-0.326404897444941	43	65224778	71080923	0.192136715055622	3	NA	0.192136715055622	3	NA	5856145	NA	29	11	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PTGER4	5	40679498	40693735	FALSE	316	-0.143574193475256	49	39021030	43704252	0.365165917639896	3	1	0.365165917639896	3	1	4683222	2	28	7	0	FALSE	GAIN	PASS
659_bTo_pair	PTGES	9	129738331	129753047	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	PTGES2	9	128120693	128128462	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	PTGES3	12	56663341	56688408	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PTGES3L	17	42968088	42980433	FALSE	1040	-0.646197503395479	26	42761348	43039396	NA	2	NA	NA	2	NA	278048	NA	18	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PTGES3L-AARSD1	17	42950526	42980528	FALSE	1040	-0.646197503395479	26	42761348	43039396	NA	2	NA	NA	2	NA	278048	NA	18	19	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PTGFR	1	78303884	78539749	FALSE	27	-0.365760579101575	39	77969065	85252731	NA	2	NA	NA	2	NA	7283666	NA	23	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PTGFRN	1	116910057	116990358	FALSE	39	-0.830052301686955	16	116577512	117118673	0.365165917639896	1	0	0.365165917639896	1	0	541161	1	6	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	PTGIR	19	46620468	46625118	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PTGIS	20	49503874	49568146	FALSE	1216	-0.465272765977354	30	47658376	50278257	1	2	1	1	2	1	2619881	1	18	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	PTGR1	9	111549722	111599893	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	PTGR2	14	73851844	73886827	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	PTGS1	9	122370530	122395703	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	PTGS2	1	186671791	186680427	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	PTH	11	13492055	13496181	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	PTH1R	3	46877746	46903799	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	PTH2	19	49422414	49423441	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	PTH2R	2	208359714	208854503	FALSE	170	-0.412902611462209	39	208271511	209825900	NA	2	NA	NA	2	NA	1554389	NA	4	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PTHLH	12	27958084	27972705	FALSE	759	-0.427669886187443	30	25503824	31088026	1	2	1	1	2	1	5584202	1	28	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	PTK2	8	140657900	141002216	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	36	4	FALSE	DIPLOID	PASS
659_bTo_pair	PTK2B	8	27311482	27459391	FALSE	522	-0.616914645700195	26	26383178	27467373	NA	2	NA	NA	2	NA	1084195	NA	8	30	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PTK6	20	63528001	63537370	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	PTK7	6	43076268	43161719	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	24	1	FALSE	DIPLOID	PASS
659_bTo_pair	PTMA	2	231706895	231713541	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	PTMS	12	6765516	6770952	FALSE	743	-0.145896859645485	51	6620180	6938488	0.365165917639896	3	NA	0.365165917639896	3	NA	318308	NA	20	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	PTN	7	137227341	137343865	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	PTOV1	19	49850735	49860744	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	PTP4A1	6	63521746	63583377	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	PTP4A2	1	31906421	31944856	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	PTP4A3	8	141391993	141432454	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	PTPA	9	129110950	129148946	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	11	2	FALSE	HETLOSS	PASS
659_bTo_pair	PTPDC1	9	94030794	94109856	FALSE	606	-0.547644280946133	27	91214370	95094057	1	2	1	1	2	1	3879687	1	31	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	PTPMT1	11	47565430	47573461	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	PTPN1	20	50510321	50585241	TRUE	1217	1.32723436315023	87	50505435	50585064	0.364342740527346	15	NA	0.364342740527346	15	NA	79629	NA	1	32	1	FALSE	AMP	PASS
659_bTo_pair	PTPN11	12	112418351	112509913	FALSE	803	1.97621569200218	102	112419067	112509763	0.364342740527346	26	NA	0.364342740527346	26	NA	90696	NA	1	33	0	FALSE	AMP	PASS
659_bTo_pair	PTPN12	7	77537275	77640071	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	21	1	FALSE	DIPLOID	PASS
659_bTo_pair	PTPN13	4	86594315	86815171	FALSE	291	-0.458701040497953	34	83536708	87613131	NA	2	NA	NA	2	NA	4076423	NA	17	55	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PTPN14	1	214348696	214552449	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	24	2	FALSE	DIPLOID	PASS
659_bTo_pair	PTPN18	2	130356007	130375409	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	PTPN2	18	12785478	12929643	TRUE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	12	0	FALSE	GAIN	PASS
659_bTo_pair	PTPN20	10	46911396	47002488	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	3	0	FALSE	CNLOH	PASS
659_bTo_pair	PTPN21	14	88465778	88554733	FALSE	870	-0.471399657488227	30	81180359	92000019	1	2	1	1	2	1	10819660	1	29	24	2	FALSE	DIPLOID	PASS
659_bTo_pair	PTPN22	1	113813811	113871759	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	24	0	FALSE	HETLOSS	PASS
659_bTo_pair	PTPN23	3	47381011	47413441	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	31	0	FALSE	HETLOSS	PASS
659_bTo_pair	PTPN3	9	109375466	109498313	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	26	1	FALSE	DIPLOID	PASS
659_bTo_pair	PTPN4	2	119759631	119983818	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	26	0	FALSE	DIPLOID	PASS
659_bTo_pair	PTPN5	11	18727928	18792721	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	PTPN6	12	6946468	6961316	FALSE	744	1.56449506938428	91	6938748	6960737	0.364342740527346	19	NA	0.364342740527346	19	NA	21989	NA	3	17	0	FALSE	AMP	PASS
659_bTo_pair	PTPN7	1	202147013	202161588	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	PTPN9	15	75463251	75579289	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	PTPRA	20	2864184	3039076	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	30	0	FALSE	HETLOSS	PASS
659_bTo_pair	PTPRB	12	70515866	70637440	FALSE	790	-0.377310724638489	39	69586733	71157609	NA	2	NA	NA	2	NA	1570876	NA	11	53	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PTPRC	1	198638457	198757476	FALSE	60	-0.443336911293225	30	196228264	201209660	1	2	1	1	2	1	4981396	1	29	34	0	FALSE	DIPLOID	PASS
659_bTo_pair	PTPRCAP	11	67435510	67438067	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	4	0	FALSE	GAIN	PASS
659_bTo_pair	PTPRD	9	8314246	10612723	TRUE	580	0.532714568602322	68	7799458	10612656	0.364342740527346	7	NA	0.364342740527346	7	NA	2813198	NA	2	81	8	FALSE	INDETERMINATE	PASS
659_bTo_pair	PTPRE	10	127907061	128085855	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	22	8	FALSE	CNLOH	PASS
659_bTo_pair	PTPRF	1	43525187	43623666	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	42	0	FALSE	DIPLOID	PASS
659_bTo_pair	PTPRG	3	61561569	62297613	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	33	0	FALSE	HETLOSS	PASS
659_bTo_pair	PTPRH	19	55181248	55209506	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	27	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PTPRJ	11	47980558	48170841	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	32	1	FALSE	DIPLOID	PASS
659_bTo_pair	PTPRK	6	127968779	128520674	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	39	3	FALSE	DIPLOID	PASS
659_bTo_pair	PTPRM	18	7566782	8406861	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	37	3	FALSE	GAIN	PASS
659_bTo_pair	PTPRN	2	219289623	219309648	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	26	0	FALSE	HETLOSS	PASS
659_bTo_pair	PTPRN2	7	157539056	158587788	FALSE	509	-0.56054035608462	23	152759958	159144708	0.186356639256811	1	0	0.186356639256811	1	0	6384750	1	20	27	2	FALSE	HETLOSS	PASS
659_bTo_pair	PTPRO	12	15322397	15597399	FALSE	753	-0.517160615058114	27	12726042	18242949	1	2	1	1	2	1	5516907	1	31	28	2	FALSE	DIPLOID	PASS
659_bTo_pair	PTPRQ	12	80402178	80680271	FALSE	793	-0.510041181295141	29	76355979	85286979	NA	2	NA	NA	2	NA	8931000	NA	22	53	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PTPRR	12	70638073	70920843	FALSE	790	-0.377310724638489	39	69586733	71157609	NA	2	NA	NA	2	NA	1570876	NA	11	18	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PTPRS	19	5158495	5340803	TRUE	1125	1.43654718286355	88	5153547	5290963	0.364342740527346	17	NA	0.364342740527346	17	NA	137416	NA	2	56	2	TRUE	AMP	PASS
659_bTo_pair	PTPRT	20	42072752	43189970	TRUE	1208	2.29895791088971	110	42072871	42080837	0.364342740527346	34	NA	0.364342740527346	34	NA	7966	NA	1	78	3	TRUE	AMP	PASS
659_bTo_pair	PTPRU	1	29236516	29326813	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	39	2	FALSE	DIPLOID	PASS
659_bTo_pair	PTPRZ1	7	121873089	122062036	FALSE	490	-0.576498321273708	26	116888215	124790543	NA	2	NA	NA	2	NA	7902328	NA	33	43	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PTRH1	9	127690348	127724873	FALSE	619	-0.820686000870706	14	125203036	127778681	0.365165917639896	1	0	0.365165917639896	1	0	2575645	1	23	30	2	FALSE	HETLOSS	PASS
659_bTo_pair	PTRH2	17	59674636	59707626	FALSE	1058	-0.423419268198233	34	58422367	59890994	NA	2	NA	NA	2	NA	1468627	NA	20	22	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PTRHD1	2	24789734	24793382	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PTS	11	112226365	112269955	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	PTTG1	5	160421822	160428744	FALSE	353	-0.698571741790457	22	157138801	161546576	0.291335969972972	1	0	0.291335969972972	1	0	4407775	1	29	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	PTTG1IP	21	44849585	44873903	FALSE	1237	-0.454133559576209	34	44600832	44873643	NA	2	NA	NA	2	NA	272811	NA	15	7	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PTTG2	4	37960435	37961125	FALSE	278	-0.217595572850614	44	20704713	38137253	0.345317016959666	3	1	0.345317016959666	3	1	17432540	2	29	3	1	FALSE	GAIN	PASS
659_bTo_pair	PTX3	3	157436789	157443628	FALSE	250	-0.231905273142314	46	156829339	161250770	0.298322295679939	3	NA	0.298322295679939	3	NA	4421431	NA	26	6	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	PTX4	16	1485886	1488981	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	8	4	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PUDP	23	7048920	7148190	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	7	3	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	PUF60	8	143816344	143829859	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	PUM1	1	30931506	31065991	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	24	2	FALSE	DIPLOID	PASS
659_bTo_pair	PUM2	2	20248691	20352234	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	23	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PUM3	9	2720469	2844241	FALSE	574	-0.919846303005392	13	2198627	4849539	0.365165917639896	1	0	0.365165917639896	1	0	2650912	1	11	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	PURA	5	140107777	140125619	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PURB	7	44876293	44885361	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	4	0	FALSE	GAIN	PASS
659_bTo_pair	PURG	8	30995802	31033715	FALSE	524	-0.752404429217175	19	29337070	31032666	0.365165917639896	1	0	0.365165917639896	1	0	1695596	1	13	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	PUS1	12	131929200	131945896	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	PUS10	2	60940222	61018259	FALSE	118	-0.436789875977301	34	60942397	61470693	NA	2	NA	NA	2	NA	528296	NA	5	19	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PUS3	11	125893485	125903221	FALSE	732	-0.497254377564454	34	125672754	127000522	NA	2	NA	NA	2	NA	1327768	NA	19	12	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PUS7	7	105439661	105522267	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	PUS7L	12	43718993	43758817	FALSE	764	-0.478463991093384	34	40959192	45805435	NA	2	NA	NA	2	NA	4846243	NA	16	14	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PUSL1	1	1308567	1311677	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	8	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	PVALB	22	36800684	36819479	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	4	0	FALSE	CNLOH	PASS
659_bTo_pair	PVALEF	17	81165507	81183164	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	PVR	19	44643798	44663583	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	PVRIG	7	100218241	100221490	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	PWP1	12	107685732	107713167	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	PWP2	21	44107290	44131181	FALSE	1234	-0.544212636077936	27	41740855	44141314	1	2	1	1	2	1	2400459	1	31	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	PWWP2A	5	160061801	160119423	FALSE	353	-0.698571741790457	22	157138801	161546576	0.291335969972972	1	0	0.291335969972972	1	0	4407775	1	29	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	PWWP2B	10	132397168	132417863	FALSE	676	-0.612597388333807	25	132187132	133626712	0.365165917639896	1	0	0.365165917639896	1	0	1439580	1	27	9	2	FALSE	HETLOSS	PASS
659_bTo_pair	PXDC1	6	3722614	3752026	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	PXDN	2	1631887	1744852	FALSE	89	-0.524158836377085	27	41620	3847167	1	2	1	1	2	1	3805547	1	18	30	0	FALSE	DIPLOID	PASS
659_bTo_pair	PXDNL	8	51319578	51809445	FALSE	543	-0.403572692824667	39	47962754	54147613	NA	2	NA	NA	2	NA	6184859	NA	18	29	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PXK	3	58332880	58426126	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	21	2	FALSE	HETLOSS	PASS
659_bTo_pair	PXMP2	12	132687606	132704991	FALSE	818	-0.324030199616913	43	132687628	133234369	0.192136715055622	3	NA	0.192136715055622	3	NA	546741	NA	14	6	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	PXMP4	20	33702754	33720319	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	PXN	12	120210439	120265771	FALSE	810	-0.438737881374958	34	120127967	120903912	NA	2	NA	NA	2	NA	775945	NA	20	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PXT1	6	36390551	36442889	FALSE	393	-0.47521086997284	30	35476361	36677919	1	2	1	1	2	1	1201558	1	21	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	PXYLP1	3	141228726	141367753	FALSE	246	-0.322519280750539	43	139344000	142447976	0.192136715055622	3	NA	0.192136715055622	3	NA	3103976	NA	19	8	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	PYCARD	16	31201485	31203450	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	PYCR1	17	81932384	81942412	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	PYCR2	1	225919877	225924340	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	PYCR3	8	143603913	143609773	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	PYDC1	16	31215962	31217359	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	PYDC2	3	191461163	191461456	FALSE	269	-0.263219948753545	44	189957970	195888442	0.345317016959666	3	1	0.345317016959666	3	1	5930472	2	31	2	0	FALSE	GAIN	PASS
659_bTo_pair	PYGB	20	25248069	25298014	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	22	1	FALSE	DIPLOID	PASS
659_bTo_pair	PYGL	14	50857891	50944736	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	34	0	FALSE	DIPLOID	PASS
659_bTo_pair	PYGM	11	64746389	64760297	FALSE	704	-0.387292846909492	39	64556376	64803187	NA	2	NA	NA	2	NA	246811	NA	7	19	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PYGO1	15	55538890	55588947	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	PYGO2	1	154957026	154963853	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	PYHIN1	1	158930796	158977054	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	PYM1	12	55901413	55932618	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	PYROXD1	12	21437615	21471252	FALSE	755	-0.347739111320178	43	18683333	21462024	0.192136715055622	3	NA	0.192136715055622	3	NA	2778691	NA	14	21	1	TRUE	GAIN (many states)	PASS
659_bTo_pair	PYROXD2	10	98383565	98415184	FALSE	666	-0.516928660882684	29	98163350	100063639	NA	2	NA	NA	2	NA	1900289	NA	16	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PYURF	4	88520985	88523813	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	PYY	17	43952738	44004469	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	PZP	12	9148840	9208370	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	36	7	FALSE	DIPLOID	PASS
659_bTo_pair	QARS	3	49095932	49105135	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	QDPR	4	17460261	17512234	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	7	0	FALSE	GAIN	PASS
659_bTo_pair	QKI	6	163414000	163578596	FALSE	445	0.567075882616504	69	160991940	163563366	0.364342740527346	8	NA	0.364342740527346	8	NA	2571426	NA	5	60	6	TRUE	INDETERMINATE	PASS
659_bTo_pair	QPCT	2	37342827	37373322	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	QPCTL	19	45692483	45703989	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	9	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	QPRT	16	29679008	29698699	FALSE	965	-0.735005669796309	19	28989573	29982749	0.365165917639896	1	0	0.365165917639896	1	0	993176	1	25	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	QRFP	9	130892702	130896812	FALSE	622	1.90629800271629	101	130713294	130893560	0.364342740527346	25	NA	0.364342740527346	25	NA	180266	NA	2	2	0	TRUE	AMP	PASS
659_bTo_pair	QRFPR	4	121329312	121381059	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	9	2	FALSE	DIPLOID	PASS
659_bTo_pair	QRICH1	3	49029707	49094363	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	QRICH2	17	76274049	76307998	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	32	7	FALSE	DIPLOID	PASS
659_bTo_pair	QRSL1	6	106629578	106668417	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	11	4	FALSE	DIPLOID	PASS
659_bTo_pair	QSER1	11	32892820	32993316	FALSE	692	-0.391103687852083	35	32583952	33774394	1	2	1	1	2	1	1190442	1	13	27	0	FALSE	DIPLOID	PASS
659_bTo_pair	QSOX1	1	180154834	180204030	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	17	3	FALSE	DIPLOID	PASS
659_bTo_pair	QSOX2	9	136206333	136245841	FALSE	629	-0.955558414525678	9	134750808	136485014	0.291955377254426	0	0	0.291955377254426	0	0	1734206	0	30	15	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	QTRT1	19	10701430	10713437	FALSE	1141	-0.578703281933348	26	10514217	10929669	NA	2	NA	NA	2	NA	415452	NA	14	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	QTRT2	3	114005833	114088422	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	20	1	FALSE	GAIN	PASS
659_bTo_pair	R3HCC1	8	23270120	23296279	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	9	2	FALSE	HETLOSS	PASS
659_bTo_pair	R3HCC1L	10	98134624	98244897	FALSE	666	-0.516928660882684	29	98163350	100063639	NA	2	NA	NA	2	NA	1900289	NA	16	15	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	R3HDM1	2	135531455	135725270	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	28	1	FALSE	DIPLOID	PASS
659_bTo_pair	R3HDM2	12	57253762	57431005	FALSE	780	-0.355982590799428	43	57138514	57456829	0.192136715055622	3	NA	0.192136715055622	3	NA	318315	NA	9	26	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	R3HDM4	19	896503	913245	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	8	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	R3HDML	20	44336986	44351235	FALSE	1210	-0.476296426145969	34	43513997	45110019	NA	2	NA	NA	2	NA	1596022	NA	26	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RAB10	2	26034107	26137454	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	RAB11A	15	65726054	65891991	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	RAB11B	19	8389981	8404434	FALSE	1132	-0.583194501817822	26	7916513	8843246	NA	2	NA	NA	2	NA	926733	NA	25	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RAB11FIP1	8	37858618	37899467	FALSE	532	-0.898955944857558	13	37845201	38269206	0.365165917639896	1	0	0.365165917639896	1	0	424005	1	12	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	RAB11FIP2	10	118004916	118046603	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	10	0	FALSE	CNLOH	PASS
659_bTo_pair	RAB11FIP3	16	425619	523011	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	19	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RAB11FIP4	17	31391624	31538217	FALSE	1020	-0.750634304030824	19	31391980	31901545	0.365165917639896	1	0	0.365165917639896	1	0	509565	1	3	16	3	FALSE	HETLOSS	PASS
659_bTo_pair	RAB11FIP5	2	73073382	73156721	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	RAB12	18	8609437	8639382	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	6	0	FALSE	GAIN	PASS
659_bTo_pair	RAB13	1	153981617	153986358	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	RAB14	9	121178137	121223014	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	RAB15	14	64945814	64973226	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	RAB17	2	237574322	237601614	FALSE	190	-0.691419458816616	21	236392006	238848635	0.140309795179477	0	0	0.140309795179477	0	0	2456629	0	22	5	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RAB18	10	27504174	27542237	FALSE	638	-0.441875687518437	32	27112127	31908266	0.365165917639896	2	0	0.365165917639896	2	0	4796139	2	18	8	0	FALSE	CNLOH	PASS
659_bTo_pair	RAB19	7	140404043	140426250	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	RAB1A	2	65070696	65130331	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	RAB1B	11	66268533	66277492	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	6	0	FALSE	GAIN	PASS
659_bTo_pair	RAB20	13	110523066	110561733	FALSE	844	-0.576217954819194	24	110150427	113263496	0.359751661895656	2	0	0.359751661895656	2	0	3113069	2	19	5	0	FALSE	CNLOH	PASS
659_bTo_pair	RAB21	12	71754874	71800285	FALSE	792	-0.349776929755415	43	71610399	76348235	0.192136715055622	3	NA	0.192136715055622	3	NA	4737836	NA	18	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RAB22A	20	58309696	58367507	FALSE	1221	-0.44936578355072	34	56249153	58715213	NA	2	NA	NA	2	NA	2466060	NA	27	7	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RAB23	6	57186992	57222314	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	RAB24	5	177301198	177303744	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	RAB25	1	156061160	156070514	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	RAB26	16	2140803	2154165	FALSE	940	-0.616751353035103	26	2090120	2153325	NA	2	NA	NA	2	NA	63205	NA	2	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RAB27A	15	55202966	55319113	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	RAB27B	18	54717860	54895516	FALSE	1105	-0.785555027616249	16	52752095	58670682	0.365165917639896	1	0	0.365165917639896	1	0	5918587	1	19	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	RAB28	4	13361354	13484365	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	9	0	FALSE	GAIN	PASS
659_bTo_pair	RAB29	1	205767986	205775460	FALSE	68	-1.34518521733321	4	205718394	205797003	0.365165917639896	0	0	0.365165917639896	0	0	78609	0	3	5	0	FALSE	HOMDEL	PASS
659_bTo_pair	RAB2A	8	60516857	60623627	FALSE	550	-0.186881774239562	48	60208949	67746087	0.365165917639896	3	NA	0.365165917639896	3	NA	7537138	NA	33	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RAB2B	14	21459020	21476973	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	RAB30	11	82973133	83071923	FALSE	712	-0.188800010767045	48	77590086	86068715	0.365165917639896	3	NA	0.365165917639896	3	NA	8478629	NA	30	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RAB31	18	9708165	9862551	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	7	1	FALSE	GAIN	PASS
659_bTo_pair	RAB32	6	146543693	146554965	FALSE	431	-0.504239059693729	30	143136912	149638436	1	2	1	1	2	1	6501524	1	29	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	RAB33A	23	130171649	130184870	FALSE	1335	0.100243493544559	59	130066940	134244999	0.308533751035793	5	NA	0.308533751035793	5	NA	4178059	NA	21	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	RAB33B	4	139453232	139476609	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	RAB34	17	28714281	28718429	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	RAB35	12	120095095	120117502	FALSE	809	2.51056152157375	114	120093065	120116662	0.364342740527346	39	NA	0.364342740527346	39	NA	23597	NA	2	14	1	FALSE	AMP	PASS
659_bTo_pair	RAB36	22	23145326	23164350	FALSE	1250	-0.793141417924499	16	22896030	23161569	0.365165917639896	1	0	0.365165917639896	1	0	265539	1	4	12	3	FALSE	HETLOSS	PASS
659_bTo_pair	RAB37	17	74670578	74747335	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	RAB38	11	88113242	88175467	FALSE	714	-0.230278951577934	46	86306357	90211282	0.298322295679939	3	NA	0.298322295679939	3	NA	3904925	NA	21	5	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	RAB39A	11	107928503	107963482	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	RAB39B	23	155258241	155264589	FALSE	1341	-0.0231097163941018	55	154552015	155545250	0.328696605851359	4	NA	0.328696605851359	4	NA	993235	NA	23	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RAB3A	19	18196784	18204074	FALSE	1159	-0.165917001507678	49	18177228	19138502	0.365165917639896	3	1	0.365165917639896	3	1	961274	2	36	5	0	FALSE	GAIN	PASS
659_bTo_pair	RAB3B	1	51907956	51990764	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	RAB3C	5	58582221	58859394	FALSE	323	-0.645106866010582	25	58495036	67196614	0.365165917639896	1	0	0.365165917639896	1	0	8701578	1	31	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	RAB3D	19	11322046	11346270	FALSE	1143	-0.599591757528625	23	11089545	11375998	0.186356639256811	1	0	0.186356639256811	1	0	286453	1	11	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	RAB3GAP1	2	135052265	135176394	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	25	0	FALSE	DIPLOID	PASS
659_bTo_pair	RAB3GAP2	1	220148293	220272454	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	37	0	FALSE	DIPLOID	PASS
659_bTo_pair	RAB3IL1	11	61897301	61920269	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	12	3	FALSE	GAIN	PASS
659_bTo_pair	RAB3IP	12	69738681	69823204	FALSE	790	-0.377310724638489	39	69586733	71157609	NA	2	NA	NA	2	NA	1570876	NA	11	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RAB40A	23	103499130	103519489	FALSE	1322	0.637402044390066	71	103500209	103630133	0.364342740527346	8	NA	0.364342740527346	8	NA	129924	NA	4	4	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	RAB40AL	23	102937272	102938300	FALSE	1321	0.439394403838451	66	101391440	103377786	0.364342740527346	7	NA	0.364342740527346	7	NA	1986346	NA	34	4	2	FALSE	INDETERMINATE	PASS
659_bTo_pair	RAB40B	17	82654973	82698728	FALSE	1085	-0.607666454607286	26	82405295	83094473	NA	2	NA	NA	2	NA	689178	NA	13	7	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RAB40C	16	589357	629272	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RAB41	23	70282093	70285002	FALSE	1311	0.0481524733197309	56	68048478	70452009	0.365165917639896	4	NA	0.365165917639896	4	NA	2403531	NA	19	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RAB42	1	28592200	28595443	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	RAB43	3	129087569	129122801	FALSE	240	-0.311262736248051	40	128620554	130098189	0.308149309490068	3	1	0.308149309490068	3	1	1477635	2	22	4	0	FALSE	GAIN	PASS
659_bTo_pair	RAB44	6	36697810	36733183	FALSE	395	-0.486049210799182	34	36704239	37028105	NA	2	NA	NA	2	NA	323866	NA	7	18	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RAB4A	1	229271062	229305894	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	RAB4B	19	40778216	40796938	FALSE	1173	-0.760690164248215	19	40322104	40807873	0.365165917639896	1	0	0.365165917639896	1	0	485769	1	21	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	RAB4B-EGLN2	19	40778242	40808418	FALSE	1173	-0.760690164248215	19	40322104	40807873	0.365165917639896	1	0	0.365165917639896	1	0	485769	1	21	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	RAB5A	3	19947079	19985175	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	RAB5B	12	55973913	55996683	FALSE	776	-0.798270269619795	16	55987117	56074534	0.365165917639896	1	0	0.365165917639896	1	0	87417	1	4	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	RAB5C	17	42124976	42155044	FALSE	1036	-0.764029118419186	19	41624551	42193564	0.365165917639896	1	0	0.365165917639896	1	0	569013	1	25	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	RAB5IF	20	36605734	36612557	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	RAB6A	11	73675638	73761137	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	9	1	FALSE	GAIN	PASS
659_bTo_pair	RAB6B	3	133824239	133895836	FALSE	242	-0.32037413513609	40	130560427	134790274	0.308149309490068	3	1	0.308149309490068	3	1	4229847	2	29	8	0	FALSE	GAIN	PASS
659_bTo_pair	RAB6C	2	129979664	129982738	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	RAB6D	2	131361111	131364142	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	RAB7A	3	128726122	128814796	FALSE	240	-0.311262736248051	40	128620554	130098189	0.308149309490068	3	1	0.308149309490068	3	1	1477635	2	22	5	0	FALSE	GAIN	PASS
659_bTo_pair	RAB8A	19	16111629	16134234	FALSE	1152	-0.702482358931041	22	15914366	16234459	0.291335969972972	1	0	0.291335969972972	1	0	320093	1	8	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	RAB8B	15	63189469	63267782	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	RAB9A	23	13689125	13710506	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	3	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	RAB9B	23	103822322	103832228	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	3	0	FALSE	AMP (many states)	PASS
659_bTo_pair	RABAC1	19	41956681	41959390	FALSE	1177	-0.671885212726332	22	41354916	42250573	0.291335969972972	1	0	0.291335969972972	1	0	895657	1	32	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	RABEP1	17	5282265	5385812	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	20	1	FALSE	HETLOSS	PASS
659_bTo_pair	RABEP2	16	28904421	28936526	FALSE	962	-0.522336070959039	29	27403203	28925074	NA	2	NA	NA	2	NA	1521871	NA	25	23	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	RABEPK	9	125200542	125234158	FALSE	619	-0.820686000870706	14	125203036	127778681	0.365165917639896	1	0	0.365165917639896	1	0	2575645	1	23	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	RABGAP1	9	122940833	123104866	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	30	1	FALSE	HETLOSS	PASS
659_bTo_pair	RABGAP1L	1	174159410	174995308	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	34	1	FALSE	DIPLOID	PASS
659_bTo_pair	RABGEF1	7	66682164	66811464	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	RABGGTA	14	24265538	24271739	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	RABGGTB	1	75786197	75795079	FALSE	25	-0.394411030612058	39	74026891	77942032	NA	2	NA	NA	2	NA	3915141	NA	22	9	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RABIF	1	202878957	202889135	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	RABL2A	2	113627229	113643396	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	9	3	FALSE	DIPLOID	PASS
659_bTo_pair	RABL2B	22	50767501	50783663	FALSE	1273	-0.594438765059826	26	50738284	50777977	NA	2	NA	NA	2	NA	39693	NA	2	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RABL3	3	120686681	120742993	FALSE	236	-0.555107352649266	26	120168171	121419120	NA	2	NA	NA	2	NA	1250949	NA	8	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RABL6	9	136807943	136841187	FALSE	631	-1.04738377038343	8	136673897	136866235	0.342391532111247	0	0	0.342391532111247	0	0	192338	0	15	19	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RAC1	7	6374523	6403977	FALSE	456	-0.240618790532325	45	6028682	12688782	0.279823559258657	3	0	0.279823559258657	3	0	6660100	3	32	14	1	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	RAC2	22	37225261	37244448	FALSE	1263	-0.528184158498335	29	36991204	37967644	NA	2	NA	NA	2	NA	976440	NA	31	6	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RAC3	17	82031624	82034204	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	RACGAP1	12	49976923	50033136	FALSE	770	-0.500134310902258	34	49065087	50081631	NA	2	NA	NA	2	NA	1016544	NA	25	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RACK1	5	181236909	181248096	FALSE	363	-0.662769973757303	22	180739384	181260807	0.291335969972972	1	0	0.291335969972972	1	0	521423	1	12	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	RAD1	5	34905264	34918989	FALSE	312	-0.206081392785099	47	24487677	35857105	0.365165917639896	3	1	0.365165917639896	3	1	11369428	2	27	8	0	FALSE	GAIN	PASS
659_bTo_pair	RAD17	5	69369293	69414801	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	RAD18	3	8775402	8963773	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	14	1	FALSE	HETLOSS	PASS
659_bTo_pair	RAD21	8	116845935	116874866	TRUE	562	1.19147043757921	84	116771700	116938460	0.364342740527346	14	NA	0.364342740527346	14	NA	166760	NA	3	29	2	FALSE	AMP	PASS
659_bTo_pair	RAD21L1	20	1226056	1296421	FALSE	1195	-0.60512265366003	23	87765	1537211	0.186356639256811	1	0	0.186356639256811	1	0	1449446	1	33	14	1	FALSE	HETLOSS	PASS
659_bTo_pair	RAD23A	19	12945855	12953642	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RAD23B	9	107283137	107332194	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	RAD50	5	132556019	132646344	TRUE	334	0.895961408263885	76	132446676	132651365	0.364342740527346	11	NA	0.364342740527346	11	NA	204689	NA	4	56	0	FALSE	AMP	PASS
659_bTo_pair	RAD51	15	40694774	40732339	TRUE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	RAD51AP1	12	4538798	4560048	FALSE	741	-0.251609480735115	44	4489790	6567957	0.345317016959666	3	1	0.345317016959666	3	1	2078167	2	28	10	0	FALSE	GAIN	PASS
659_bTo_pair	RAD51AP2	2	17510584	17518439	FALSE	93	-0.378491391859888	39	15947306	17745967	NA	2	NA	NA	2	NA	1798661	NA	4	15	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RAD51B	14	67819779	68730218	TRUE	863	1.14186385010033	83	67819799	68796162	0.364342740527346	13	NA	0.364342740527346	13	NA	976363	NA	2	40	3	FALSE	AMP	PASS
659_bTo_pair	RAD51C	17	58692573	58735611	TRUE	1058	-0.423419268198233	34	58422367	59890994	NA	2	NA	NA	2	NA	1468627	NA	20	21	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RAD51D	17	35092208	35121522	TRUE	1023	1.57457363935839	91	35090095	35119855	0.364342740527346	19	NA	0.364342740527346	19	NA	29760	NA	2	42	1	TRUE	AMP	PASS
659_bTo_pair	RAD51L3-RFFL	17	35011349	35121493	FALSE	1022	-0.670211431189836	22	32030679	35026358	0.291335969972972	1	0	0.291335969972972	1	0	2995679	1	23	50	1	TRUE	HETLOSS	PASS
659_bTo_pair	RAD52	12	912077	990053	FALSE	738	0.753180639927267	74	896148	1083520	0.364342740527346	9	NA	0.364342740527346	9	NA	187372	NA	3	21	3	FALSE	INDETERMINATE	PASS
659_bTo_pair	RAD54B	8	94371960	94475109	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	21	2	FALSE	GAIN	PASS
659_bTo_pair	RAD54L	1	46247688	46278473	FALSE	16	-0.485631979032023	30	46175602	48453048	1	2	1	1	2	1	2277446	1	32	27	0	FALSE	DIPLOID	PASS
659_bTo_pair	RAD54L2	3	51541144	51668667	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	26	0	FALSE	HETLOSS	PASS
659_bTo_pair	RAD9A	11	67317871	67398410	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	19	2	FALSE	GAIN	PASS
659_bTo_pair	RAD9B	12	110501655	110532086	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	RADIL	7	4797055	4883719	FALSE	453	-0.32600279290147	42	3619174	5500988	0.189552622934988	3	0	0.189552622934988	3	0	1881814	3	12	29	2	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	RAE1	20	57351010	57379211	FALSE	1221	-0.44936578355072	34	56249153	58715213	NA	2	NA	NA	2	NA	2466060	NA	27	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RAET1E	6	149883375	149898102	FALSE	433	-0.531492105252902	29	149727245	150020184	NA	2	NA	NA	2	NA	292939	NA	9	7	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RAET1G	6	149916878	149923121	FALSE	433	-0.531492105252902	29	149727245	150020184	NA	2	NA	NA	2	NA	292939	NA	9	6	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RAET1L	6	150018334	150025532	FALSE	433	-0.531492105252902	29	149727245	150020184	NA	2	NA	NA	2	NA	292939	NA	9	5	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	RAF1	3	12583601	12664226	FALSE	204	0.763949885094907	74	12581833	12664136	0.364342740527346	9	NA	0.364342740527346	9	NA	82303	NA	2	83	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	RAG1	11	36510709	36593156	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	RAG2	11	36575574	36598279	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	RAI1	17	17681473	17811453	FALSE	1014	-0.559544539688918	26	17247059	18028347	NA	2	NA	NA	2	NA	781288	NA	10	24	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RAI14	5	34656237	34832627	FALSE	312	-0.206081392785099	47	24487677	35857105	0.365165917639896	3	1	0.365165917639896	3	1	11369428	2	27	24	4	FALSE	GAIN	PASS
659_bTo_pair	RAI2	23	17800049	17861337	FALSE	1276	0.0763243231691416	59	15827382	20064777	0.308533751035793	5	NA	0.308533751035793	5	NA	4237395	NA	24	7	0	FALSE	AMP (many states)	PASS
659_bTo_pair	RALA	7	39623483	39708124	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	4	0	FALSE	GAIN	PASS
659_bTo_pair	RALB	2	120240064	120294713	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	RALBP1	18	9475009	9538116	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	11	0	FALSE	GAIN	PASS
659_bTo_pair	RALGAPA1	14	35538352	35809304	FALSE	854	-0.32038786389426	43	35534938	36513130	0.192136715055622	3	NA	0.192136715055622	3	NA	978192	NA	5	53	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	RALGAPA2	20	20389552	20712488	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	42	0	FALSE	DIPLOID	PASS
659_bTo_pair	RALGAPB	20	38472816	38578861	FALSE	1205	-0.619744376635615	23	37518926	41023791	0.186356639256811	1	0	0.186356639256811	1	0	3504865	1	19	29	1	FALSE	HETLOSS	PASS
659_bTo_pair	RALGDS	9	133097720	133149334	FALSE	627	-0.867007674319489	12	132986776	134157867	0.365165917639896	1	0	0.365165917639896	1	0	1171091	1	28	24	3	FALSE	HETLOSS	PASS
659_bTo_pair	RALGPS1	9	126914774	127223166	FALSE	619	-0.820686000870706	14	125203036	127778681	0.365165917639896	1	0	0.365165917639896	1	0	2575645	1	23	29	0	FALSE	HETLOSS	PASS
659_bTo_pair	RALGPS2	1	178725147	178921841	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	27	1	FALSE	DIPLOID	PASS
659_bTo_pair	RALY	20	33993646	34108308	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	RALYL	8	84182787	84921844	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	11	1	FALSE	GAIN	PASS
659_bTo_pair	RAMAC	15	82986207	82991057	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	3	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RAMP1	2	237858893	237912114	FALSE	190	-0.691419458816616	21	236392006	238848635	0.140309795179477	0	0	0.140309795179477	0	0	2456629	0	22	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RAMP2	17	42758447	42763041	FALSE	1040	-0.646197503395479	26	42761348	43039396	NA	2	NA	NA	2	NA	278048	NA	18	5	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RAMP3	7	45157791	45186302	FALSE	464	-0.323591849229323	42	45157835	48245556	0.189552622934988	3	0	0.189552622934988	3	0	3087721	3	12	4	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	RAN	12	130871879	130877678	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	RANBP1	22	20115938	20127357	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	10	0	FALSE	CNLOH	PASS
659_bTo_pair	RANBP10	16	67723066	67806652	FALSE	979	-0.429457644119204	34	67645299	68698317	NA	2	NA	NA	2	NA	1053018	NA	33	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RANBP17	5	170861870	171300015	FALSE	356	-0.773912908266316	17	162095550	171298806	0.365165917639896	1	0	0.365165917639896	1	0	9203256	1	21	28	2	FALSE	HETLOSS	PASS
659_bTo_pair	RANBP2	2	108719481	108785811	FALSE	133	0.937687771172159	78	108719628	108785705	0.364342740527346	11	NA	0.364342740527346	11	NA	66077	NA	1	60	5	FALSE	AMP	PASS
659_bTo_pair	RANBP3	19	5916139	5978142	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	RANBP3L	5	36248434	36302114	FALSE	314	-0.173277106490387	51	35904615	38924434	0.365165917639896	3	NA	0.365165917639896	3	NA	3019819	NA	16	16	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	RANBP6	9	6011043	6015625	FALSE	579	-0.757785700087963	19	5656721	7798588	0.365165917639896	1	0	0.365165917639896	1	0	2141867	1	11	13	2	FALSE	HETLOSS	PASS
659_bTo_pair	RANBP9	6	13621498	13711564	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	RANGAP1	22	41245611	41286251	FALSE	1269	-0.443951758803067	34	41205309	42514754	NA	2	NA	NA	2	NA	1309445	NA	31	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RANGRF	17	8288497	8290092	FALSE	1005	-0.533729334585785	29	8204923	8370291	NA	2	NA	NA	2	NA	165368	NA	9	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RAP1A	1	111542218	111716691	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	RAP1B	12	68610839	68671901	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	RAP1GAP	1	21596215	21669363	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	27	2	FALSE	DIPLOID	PASS
659_bTo_pair	RAP1GAP2	17	2755705	3037739	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	25	3	FALSE	HETLOSS	PASS
659_bTo_pair	RAP1GDS1	4	98261384	98443861	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	RAP2A	13	97434222	97469128	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	3	0	FALSE	CNLOH	PASS
659_bTo_pair	RAP2B	3	153162270	153170620	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	3	0	FALSE	GAIN	PASS
659_bTo_pair	RAP2C	23	132203024	132219480	FALSE	1335	0.100243493544559	59	130066940	134244999	0.308533751035793	5	NA	0.308533751035793	5	NA	4178059	NA	21	3	0	FALSE	AMP (many states)	PASS
659_bTo_pair	RAPGEF1	9	131576770	131740074	FALSE	625	-0.794391185935477	14	131261330	132889947	0.365165917639896	1	0	0.365165917639896	1	0	1628617	1	17	30	1	FALSE	HETLOSS	PASS
659_bTo_pair	RAPGEF2	4	159103013	159360174	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	37	2	FALSE	HETLOSS	PASS
659_bTo_pair	RAPGEF3	12	47734367	47771040	FALSE	766	-0.557616146966431	26	45922034	47968195	NA	2	NA	NA	2	NA	2046161	NA	13	29	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RAPGEF4	2	172735274	173052893	FALSE	153	-0.469039793655258	34	172736055	177217715	NA	2	NA	NA	2	NA	4481660	NA	28	32	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RAPGEF5	7	22118238	22357144	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	23	0	FALSE	GAIN	PASS
659_bTo_pair	RAPGEF6	5	131423921	131635236	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	37	2	FALSE	HETLOSS	PASS
659_bTo_pair	RAPGEFL1	17	40177010	40195656	FALSE	1030	-0.735138103765796	19	39868404	40278196	0.365165917639896	1	0	0.365165917639896	1	0	409792	1	14	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	RAPH1	2	203394345	203535410	FALSE	166	-0.425780118113581	30	201288659	203854096	1	2	1	1	2	1	2565437	1	22	32	0	FALSE	DIPLOID	PASS
659_bTo_pair	RAPSN	11	47437757	47449178	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	RARA	17	40309192	40357643	FALSE	1031	1.71784444858934	97	40288030	40357572	0.364342740527346	21	NA	0.364342740527346	21	NA	69542	NA	2	70	6	FALSE	AMP	PASS
659_bTo_pair	RARB	3	25174332	25597932	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	RARG	12	53210567	53232980	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	RARRES1	3	158696892	158732696	FALSE	250	-0.231905273142314	46	156829339	161250770	0.298322295679939	3	NA	0.298322295679939	3	NA	4421431	NA	26	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RARRES2	7	150338317	150341674	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	RARRES3	11	63536809	63546462	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RARS	5	168486445	168519299	FALSE	356	-0.773912908266316	17	162095550	171298806	0.365165917639896	1	0	0.365165917639896	1	0	9203256	1	21	16	1	FALSE	HETLOSS	PASS
659_bTo_pair	RARS2	6	87514378	87590003	FALSE	407	-0.739487270214454	18	87337082	88963417	0.180216333675297	0	0	0.180216333675297	0	0	1626335	0	11	20	4	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RASA1	5	87267888	87391931	TRUE	328	0.354456346741201	65	87268109	87391848	0.364342740527346	6	NA	0.364342740527346	6	NA	123739	NA	2	45	0	FALSE	AMP (many states)	PASS
659_bTo_pair	RASA2	3	141487047	141615342	FALSE	246	-0.322519280750539	43	139344000	142447976	0.192136715055622	3	NA	0.192136715055622	3	NA	3103976	NA	19	26	4	FALSE	GAIN (many states)	PASS
659_bTo_pair	RASA3	13	113977783	114132611	FALSE	846	-0.38711803760524	39	113325636	114000814	NA	2	NA	NA	2	NA	675178	NA	11	26	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	RASA4	7	102573807	102616757	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	RASA4B	7	102482445	102517781	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	RASAL1	12	113098819	113136239	FALSE	806	-0.481242901669781	30	113099979	114403736	1	2	1	1	2	1	1303757	1	13	21	3	FALSE	DIPLOID	PASS
659_bTo_pair	RASAL2	1	178094141	178484147	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	25	0	FALSE	DIPLOID	PASS
659_bTo_pair	RASAL3	19	15451624	15464571	FALSE	1151	-0.245775583538201	44	15355095	15913929	0.345317016959666	3	1	0.345317016959666	3	1	558834	2	15	21	0	FALSE	GAIN	PASS
659_bTo_pair	RASD1	17	17494437	17496395	FALSE	1014	-0.559544539688918	26	17247059	18028347	NA	2	NA	NA	2	NA	781288	NA	10	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RASD2	22	35540868	35554001	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	5	0	FALSE	CNLOH	PASS
659_bTo_pair	RASEF	9	82979585	83063177	FALSE	598	-0.546497547865564	29	78236395	83956411	NA	2	NA	NA	2	NA	5720016	NA	14	18	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RASGEF1A	10	43194535	43266919	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	15	0	FALSE	CNLOH	PASS
659_bTo_pair	RASGEF1B	4	81426393	82044244	FALSE	289	-0.397475195823872	39	80335777	83458331	NA	2	NA	NA	2	NA	3122554	NA	19	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RASGEF1C	5	180100791	180209153	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	14	3	FALSE	HETLOSS	PASS
659_bTo_pair	RASGRF1	15	78959947	79090773	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	32	0	FALSE	HETLOSS	PASS
659_bTo_pair	RASGRF2	5	80960672	81230156	FALSE	326	0.37087457017442	65	80654497	80960844	0.364342740527346	6	NA	0.364342740527346	6	NA	306347	NA	3	29	1	TRUE	AMP (many states)	PASS
659_bTo_pair	RASGRP1	15	38488103	38565575	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	RASGRP2	11	64726911	64745456	FALSE	704	-0.387292846909492	39	64556376	64803187	NA	2	NA	NA	2	NA	246811	NA	7	17	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RASGRP3	2	33436324	33564750	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	18	1	FALSE	DIPLOID	PASS
659_bTo_pair	RASGRP4	19	38409051	38426305	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	18	3	FALSE	HETLOSS	PASS
659_bTo_pair	RASIP1	19	48720587	48740721	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	RASL10A	22	29312933	29319679	FALSE	1259	-0.52695279651924	29	29311622	29581007	NA	2	NA	NA	2	NA	269385	NA	7	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RASL10B	17	35731649	35743521	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RASL11A	13	27270327	27273690	FALSE	824	-0.820211361281197	14	23365275	27988570	0.365165917639896	1	0	0.365165917639896	1	0	4623295	1	32	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	RASL11B	4	52862290	52866835	FALSE	283	-0.7726728361031	19	49038034	54241294	0.365165917639896	1	0	0.365165917639896	1	0	5203260	1	15	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	RASL12	15	65053337	65076690	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	RASSF1	3	50329782	50340980	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	RASSF10	11	13009577	13012106	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	RASSF2	20	4780023	4823645	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	RASSF3	12	64507001	64697567	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	RASSF4	10	44959407	44995891	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	14	0	FALSE	CNLOH	PASS
659_bTo_pair	RASSF5	1	206507530	206589448	FALSE	69	-0.48847123055109	34	205798087	206732058	NA	2	NA	NA	2	NA	933971	NA	14	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RASSF6	4	73571550	73620631	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	12	4	FALSE	DIPLOID	PASS
659_bTo_pair	RASSF7	11	560404	564021	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RASSF8	12	25959029	26079892	FALSE	759	-0.427669886187443	30	25503824	31088026	1	2	1	1	2	1	5584202	1	28	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	RASSF9	12	85800697	85836570	FALSE	794	-0.258431968401282	46	85301316	91178343	0.298322295679939	3	NA	0.298322295679939	3	NA	5877027	NA	19	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RAVER1	19	10316212	10333640	FALSE	1139	-0.718742930681428	18	10252235	10467338	0.180216333675297	0	0	0.180216333675297	0	0	215103	0	13	16	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RAVER2	1	64745095	64833232	FALSE	21	-0.414935064922519	39	59321678	64830856	NA	2	NA	NA	2	NA	5509178	NA	22	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RAX	18	59267035	59274086	FALSE	1107	-0.779150604055344	19	58918284	59696746	0.365165917639896	1	0	0.365165917639896	1	0	778462	1	7	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	RAX2	19	3769089	3772221	FALSE	1122	-0.653400653967241	21	3157829	4037863	0.140309795179477	0	0	0.140309795179477	0	0	880034	0	27	4	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RB1	13	48303726	48599436	TRUE	834	1.28176747736728	86	48261244	48481826	0.364342740527346	15	NA	0.364342740527346	15	NA	220582	NA	3	65	0	TRUE	AMP	PASS
659_bTo_pair	RB1CC1	8	52622456	52745843	FALSE	543	-0.403572692824667	39	47962754	54147613	NA	2	NA	NA	2	NA	6184859	NA	18	31	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RBAK	7	5045821	5069488	FALSE	453	-0.32600279290147	42	3619174	5500988	0.189552622934988	3	0	0.189552622934988	3	0	1881814	3	12	11	4	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	RBAK-RBAKDN	7	4983718	5073221	FALSE	453	-0.32600279290147	42	3619174	5500988	0.189552622934988	3	0	0.189552622934988	3	0	1881814	3	12	12	5	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	RBBP4	1	32651142	32686211	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	RBBP5	1	205086142	205122015	FALSE	66	-0.597189828646048	26	204618263	205619845	NA	2	NA	NA	2	NA	1001582	NA	13	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RBBP6	16	24537693	24572863	FALSE	960	-0.449512584299377	34	23658521	27234165	NA	2	NA	NA	2	NA	3575644	NA	16	32	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RBBP7	23	16839283	16870414	FALSE	1276	0.0763243231691416	59	15827382	20064777	0.308533751035793	5	NA	0.308533751035793	5	NA	4237395	NA	24	16	3	FALSE	AMP (many states)	PASS
659_bTo_pair	RBBP8	18	22798261	23026488	FALSE	1091	0.432712712596202	66	22415585	22993850	0.364342740527346	7	NA	0.364342740527346	7	NA	578265	NA	2	21	0	TRUE	INDETERMINATE	PASS
659_bTo_pair	RBBP8NL	20	62410237	62427533	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	RBBP9	20	18486540	18497243	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	5	2	FALSE	DIPLOID	PASS
659_bTo_pair	RBCK1	20	407498	430966	FALSE	1195	-0.60512265366003	23	87765	1537211	0.186356639256811	1	0	0.186356639256811	1	0	1449446	1	33	13	1	FALSE	HETLOSS	PASS
659_bTo_pair	RBFA	18	80034358	80046397	FALSE	1113	-0.883471952658051	12	75410842	80247341	0.365165917639896	1	0	0.365165917639896	1	0	4836499	1	17	8	2	FALSE	HETLOSS	PASS
659_bTo_pair	RBFOX1	16	5239802	7713338	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	20	1	FALSE	DIPLOID	PASS
659_bTo_pair	RBFOX2	22	35738736	36028425	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	17	0	FALSE	CNLOH	PASS
659_bTo_pair	RBFOX3	17	79089345	79516148	FALSE	1081	-0.503130193321286	34	78873805	80288187	NA	2	NA	NA	2	NA	1414382	NA	19	12	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RBKS	2	27781364	27891098	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	RBL1	20	36996349	37095995	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	23	0	FALSE	DIPLOID	PASS
659_bTo_pair	RBL2	16	53433977	53491649	FALSE	968	-0.505434692233225	30	51151209	56683230	1	2	1	1	2	1	5532021	1	34	24	4	FALSE	DIPLOID	PASS
659_bTo_pair	RBM10	23	47144869	47186813	TRUE	1293	1.94530163953965	102	47145283	47191894	0.364342740527346	26	NA	0.364342740527346	26	NA	46611	NA	3	32	0	FALSE	AMP	PASS
659_bTo_pair	RBM11	21	14216130	14228372	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	RBM12	20	35648925	35664956	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	RBM12B	8	93729356	93741017	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	12	0	FALSE	GAIN	PASS
659_bTo_pair	RBM14	11	66616582	66627347	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	9	0	FALSE	GAIN	PASS
659_bTo_pair	RBM14-RBM4	11	66616626	66646469	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	15	0	FALSE	GAIN	PASS
659_bTo_pair	RBM15	1	110338506	110346681	TRUE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	RBM15B	3	51391268	51397908	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	RBM17	10	6088987	6117457	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	11	1	FALSE	CNLOH	PASS
659_bTo_pair	RBM18	9	122237624	122264839	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	RBM19	12	113816738	113966371	FALSE	806	-0.481242901669781	30	113099979	114403736	1	2	1	1	2	1	1303757	1	13	25	7	FALSE	DIPLOID	PASS
659_bTo_pair	RBM20	10	110644397	110839469	FALSE	670	1.04757741405252	81	110567756	110781819	0.364342740527346	12	NA	0.364342740527346	12	NA	214063	NA	2	22	2	TRUE	AMP	PASS
659_bTo_pair	RBM22	5	150690794	150701107	FALSE	350	-0.819899512516675	16	150444373	153997804	0.365165917639896	1	0	0.365165917639896	1	0	3553431	1	25	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	RBM23	14	22893206	22919184	FALSE	849	-0.198876830204613	48	21522824	22901846	0.365165917639896	3	NA	0.365165917639896	3	NA	1379022	NA	15	12	2	TRUE	GAIN (many states)	PASS
659_bTo_pair	RBM24	6	17281346	17293875	FALSE	370	-0.377368469329801	39	15246548	20212233	NA	2	NA	NA	2	NA	4965685	NA	18	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RBM25	14	73058436	73123898	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	RBM26	13	79311824	79406477	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	24	5	FALSE	CNLOH	PASS
659_bTo_pair	RBM27	5	146203600	146289132	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	23	0	FALSE	HETLOSS	PASS
659_bTo_pair	RBM28	7	128297685	128343908	FALSE	492	-0.463656181520944	30	126439208	129166764	1	2	1	1	2	1	2727556	1	27	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	RBM3	23	48574449	48579066	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	5	2	FALSE	AMP (many states)	PASS
659_bTo_pair	RBM33	7	155644451	155781485	FALSE	509	-0.56054035608462	23	152759958	159144708	0.186356639256811	1	0	0.186356639256811	1	0	6384750	1	20	26	5	FALSE	HETLOSS	PASS
659_bTo_pair	RBM34	1	235131183	235161457	FALSE	81	-0.251586090510492	46	235112135	235194117	0.298322295679939	3	NA	0.298322295679939	3	NA	81982	NA	3	13	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RBM38	20	57391407	57409333	FALSE	1221	-0.44936578355072	34	56249153	58715213	NA	2	NA	NA	2	NA	2466060	NA	27	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RBM39	20	35701347	35742312	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	RBM4	11	66638617	66668374	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	8	0	FALSE	GAIN	PASS
659_bTo_pair	RBM41	23	107064420	107118823	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	12	0	FALSE	AMP (many states)	PASS
659_bTo_pair	RBM42	19	35629030	35637686	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	RBM43	2	151247940	151261879	FALSE	149	-0.454179855872301	30	147845197	157628657	1	2	1	1	2	1	9783460	1	30	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	RBM44	2	237798389	237842808	FALSE	190	-0.691419458816616	21	236392006	238848635	0.140309795179477	0	0	0.140309795179477	0	0	2456629	0	22	21	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RBM45	2	178112424	178139011	FALSE	155	-0.524315670340053	27	177420364	181062892	1	2	1	1	2	1	3642528	1	16	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	RBM46	4	154781213	154828813	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	RBM47	4	40423267	40630875	FALSE	280	-0.191477557443324	47	38829296	41740154	0.365165917639896	3	1	0.365165917639896	3	1	2910858	2	22	8	1	FALSE	GAIN	PASS
659_bTo_pair	RBM48	7	92528773	92538005	FALSE	479	-0.448308050861149	30	87602941	92590330	1	2	1	1	2	1	4987389	1	30	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	RBM4B	11	66664998	66677921	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	7	0	FALSE	GAIN	PASS
659_bTo_pair	RBM5	3	50088908	50119021	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	23	0	FALSE	HETLOSS	PASS
659_bTo_pair	RBM6	3	49940007	50100045	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	31	0	FALSE	HETLOSS	PASS
659_bTo_pair	RBM7	11	114400030	114414203	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	RBM8A	1	145917714	145927678	FALSE	44	-0.0508975396039555	55	119911615	146019534	0.328696605851359	4	NA	0.328696605851359	4	NA	26107919	NA	33	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RBMS1	2	160272151	160493794	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	RBMS2	12	56521929	56596196	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RBMS3	3	28574791	30010391	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	16	4	TRUE	HETLOSS	PASS
659_bTo_pair	RBMX	23	136848004	136880764	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	10	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RBMX2	23	130401969	130413343	FALSE	1335	0.100243493544559	59	130066940	134244999	0.308533751035793	5	NA	0.308533751035793	5	NA	4178059	NA	21	7	0	FALSE	AMP (many states)	PASS
659_bTo_pair	RBMXL1	1	88979456	88992960	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	RBMXL2	11	7089027	7090900	FALSE	683	-0.403180715137318	35	6615199	8138345	1	2	1	1	2	1	1523146	1	28	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	RBMXL3	23	115189427	115192868	FALSE	1326	0.081501992784242	59	111246621	119452040	0.308533751035793	5	NA	0.308533751035793	5	NA	8205419	NA	28	12	1	FALSE	AMP (many states)	PASS
659_bTo_pair	RBP1	3	139517434	139539829	FALSE	246	-0.322519280750539	43	139344000	142447976	0.192136715055622	3	NA	0.192136715055622	3	NA	3103976	NA	19	6	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	RBP2	3	139452884	139480747	FALSE	246	-0.322519280750539	43	139344000	142447976	0.192136715055622	3	NA	0.192136715055622	3	NA	3103976	NA	19	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RBP3	10	47348371	47357875	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	14	0	FALSE	CNLOH	PASS
659_bTo_pair	RBP4	10	93591687	93601744	FALSE	662	-0.410954559094016	36	89715119	94762760	0.365165917639896	2	0	0.365165917639896	2	0	5047641	2	33	6	0	FALSE	CNLOH	PASS
659_bTo_pair	RBP5	12	7123684	7128942	FALSE	745	-0.243574834353832	44	6965649	8175835	0.345317016959666	3	1	0.345317016959666	3	1	1210186	2	26	4	1	FALSE	GAIN	PASS
659_bTo_pair	RBP7	1	9997206	10016020	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	RBPJ	4	26163455	26435131	FALSE	278	-0.217595572850614	44	20704713	38137253	0.345317016959666	3	1	0.345317016959666	3	1	17432540	2	29	15	0	FALSE	GAIN	PASS
659_bTo_pair	RBPJL	20	45306851	45317824	FALSE	1211	-0.249905145449482	46	45110461	45330545	0.298322295679939	3	NA	0.298322295679939	3	NA	220084	NA	9	12	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	RBPMS	8	30384479	30572261	FALSE	524	-0.752404429217175	19	29337070	31032666	0.365165917639896	1	0	0.365165917639896	1	0	1695596	1	13	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	RBPMS2	15	64739892	64775587	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	RBSN	3	15070073	15099163	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	16	1	FALSE	HETLOSS	PASS
659_bTo_pair	RBX1	22	40951347	40973309	FALSE	1267	-0.448885551917151	34	39313004	41087696	NA	2	NA	NA	2	NA	1774692	NA	24	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RC3H1	1	173931214	174022297	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	RC3H2	9	122844556	122905341	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	23	1	FALSE	HETLOSS	PASS
659_bTo_pair	RCAN1	21	34513142	34615142	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	RCAN2	6	46220736	46491972	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	RCAN3	1	24502351	24541040	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	4	2	FALSE	DIPLOID	PASS
659_bTo_pair	RCBTB1	13	49531946	49585583	FALSE	835	-0.766581964775609	19	48490223	50953919	0.365165917639896	1	0	0.365165917639896	1	0	2463696	1	18	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	RCBTB2	13	48488959	48533256	FALSE	835	-0.766581964775609	19	48490223	50953919	0.365165917639896	1	0	0.365165917639896	1	0	2463696	1	18	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	RCC1	1	28505943	28539300	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	RCC1L	7	75027122	75074228	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	RCC2	1	17406760	17439724	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	RCCD1	15	90954870	90963125	FALSE	929	-0.700679172673924	22	90876261	92655591	0.291335969972972	1	0	0.291335969972972	1	0	1779330	1	13	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	RCE1	11	66842835	66846546	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	11	1	FALSE	GAIN	PASS
659_bTo_pair	RCHY1	4	75479037	75514764	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	RCL1	9	4792869	4885917	FALSE	574	-0.919846303005392	13	2198627	4849539	0.365165917639896	1	0	0.365165917639896	1	0	2650912	1	11	9	0	TRUE	HETLOSS	PASS
659_bTo_pair	RCN1	11	32090904	32105755	FALSE	690	-0.499672577426227	34	26697185	32104345	NA	2	NA	NA	2	NA	5407160	NA	20	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RCN2	15	76931619	76954392	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	RCN3	19	49527618	49546962	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	RCOR1	14	102592661	102730576	FALSE	878	-0.78309571727566	16	102193484	102726534	0.365165917639896	1	0	0.365165917639896	1	0	533050	1	7	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	RCOR2	11	63911221	63916844	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	12	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RCOR3	1	211258377	211316385	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	RCSD1	1	167630093	167706249	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	RCVRN	17	9896320	9905621	FALSE	1006	-0.894220729735546	12	8370429	10825247	0.365165917639896	1	0	0.365165917639896	1	0	2454818	1	31	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	RD3	1	211476522	211492917	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	RD3L	14	103940426	103942561	FALSE	883	-0.69016701050987	21	103712930	104759455	0.140309795179477	0	0	0.140309795179477	0	0	1046525	0	14	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RDH10	8	73294612	73325281	FALSE	553	-0.248188717260806	46	68331252	73878866	0.298322295679939	3	NA	0.298322295679939	3	NA	5547614	NA	20	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RDH11	14	67676801	67695814	FALSE	862	-0.496151350288089	31	65561584	67816009	1	2	1	1	2	1	2254425	1	17	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	RDH12	14	67701886	67734452	FALSE	862	-0.496151350288089	31	65561584	67816009	1	2	1	1	2	1	2254425	1	17	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	RDH13	19	55039108	55071291	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	7	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RDH14	2	18554723	18560680	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RDH16	12	56951431	56959374	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RDH5	12	55720367	55724705	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	RDH8	19	10013249	10022279	FALSE	1136	-0.657304673205362	21	8981156	10119920	0.140309795179477	0	0	0.140309795179477	0	0	1138764	0	32	7	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RDM1	17	35918066	35930773	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	7	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RDX	11	109864295	110296722	FALSE	723	-0.542672588801529	29	108383083	111912852	NA	2	NA	NA	2	NA	3529769	NA	24	28	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	REC114	15	73443158	73560014	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	REC8	14	24171853	24180257	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	RECK	9	36036433	36124451	FALSE	591	0.73474920581053	74	35684233	36036976	0.364342740527346	9	NA	0.364342740527346	9	NA	352743	NA	17	26	0	TRUE	INDETERMINATE	PASS
659_bTo_pair	RECQL	12	21468911	21501669	TRUE	756	0.960887785397812	78	21462793	21508541	0.364342740527346	11	NA	0.364342740527346	11	NA	45748	NA	3	31	0	FALSE	AMP	PASS
659_bTo_pair	RECQL4	8	144511288	144517845	TRUE	568	1.29181371563823	86	144511089	144517745	0.364342740527346	15	NA	0.364342740527346	15	NA	6656	NA	2	25	8	FALSE	AMP	PASS
659_bTo_pair	RECQL5	17	75626845	75667189	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	27	0	FALSE	DIPLOID	PASS
659_bTo_pair	REELD1	4	146214515	146230878	FALSE	300	-0.423460920061428	34	143186078	151174790	NA	2	NA	NA	2	NA	7988712	NA	32	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	REEP1	2	86213993	86338083	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	REEP2	5	138439017	138446969	FALSE	336	-0.752536733071469	19	135941639	138575278	0.365165917639896	1	0	0.365165917639896	1	0	2633639	1	24	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	REEP3	10	63521363	63625123	FALSE	649	-0.498971247588349	34	63133428	68527348	NA	2	NA	NA	2	NA	5393920	NA	15	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	REEP4	8	22138020	22141951	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	REEP5	5	112876379	112922539	FALSE	331	-0.706980197323045	20	112861366	122075379	0.365165917639896	1	0	0.365165917639896	1	0	9214013	1	31	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	REEP6	19	1490747	1497927	FALSE	1116	-0.668595541323287	22	1229189	1605424	0.291335969972972	1	0	0.291335969972972	1	0	376235	1	21	6	3	FALSE	HETLOSS	PASS
659_bTo_pair	REG1A	2	79120362	79123419	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	5	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	REG1B	2	79085030	79088019	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	REG3A	2	79157003	79159753	FALSE	123	0.207940593066719	62	79122912	84431581	0.364342740527346	5	NA	0.364342740527346	5	NA	5308669	NA	5	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	REG3G	2	79025686	79028505	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	5	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	REG4	1	119794018	119811660	FALSE	43	-0.890933866500247	13	117628427	119906570	0.365165917639896	1	0	0.365165917639896	1	0	2278143	1	13	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	REL	2	60881521	60931610	FALSE	116	1.73781137837218	97	60881630	60920574	0.364342740527346	22	NA	0.364342740527346	22	NA	38944	NA	1	41	0	TRUE	AMP	PASS
659_bTo_pair	RELA	11	65653596	65663094	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	14	0	FALSE	GAIN	PASS
659_bTo_pair	RELB	19	45001430	45038198	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	RELCH	18	62187255	62310217	FALSE	1109	-0.86662286323735	13	60372339	62975524	0.365165917639896	1	0	0.365165917639896	1	0	2603185	1	8	34	3	FALSE	HETLOSS	PASS
659_bTo_pair	RELL1	4	37590800	37686376	FALSE	278	-0.217595572850614	44	20704713	38137253	0.345317016959666	3	1	0.345317016959666	3	1	17432540	2	29	7	1	FALSE	GAIN	PASS
659_bTo_pair	RELL2	5	141636950	141641077	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RELN	7	103471784	103989516	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	69	2	FALSE	DIPLOID	PASS
659_bTo_pair	RELT	11	73376264	73397474	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	12	1	FALSE	GAIN	PASS
659_bTo_pair	REM1	20	31475293	31484905	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	REM2	14	22883165	22887686	FALSE	849	-0.198876830204613	48	21522824	22901846	0.365165917639896	3	NA	0.365165917639896	3	NA	1379022	NA	15	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	REN	1	204154819	204190324	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	11	2	FALSE	DIPLOID	PASS
659_bTo_pair	RENBP	23	153935263	153944691	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	12	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	REP15	12	27696519	27697596	FALSE	759	-0.427669886187443	30	25503824	31088026	1	2	1	1	2	1	5584202	1	28	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	REPIN1	7	150368189	150374044	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	REPS1	6	138903493	138988261	FALSE	429	-0.412609995390511	39	138092232	142443520	NA	2	NA	NA	2	NA	4351288	NA	18	20	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	REPS2	23	16946691	17153280	FALSE	1276	0.0763243231691416	59	15827382	20064777	0.308533751035793	5	NA	0.308533751035793	5	NA	4237395	NA	24	18	0	FALSE	AMP (many states)	PASS
659_bTo_pair	RER1	1	2391775	2405444	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	RERE	1	8352397	8817643	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	30	0	FALSE	DIPLOID	PASS
659_bTo_pair	RERG	12	15107783	15348675	FALSE	753	-0.517160615058114	27	12726042	18242949	1	2	1	1	2	1	5516907	1	31	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	RERGL	12	18080869	18320107	FALSE	753	-0.517160615058114	27	12726042	18242949	1	2	1	1	2	1	5516907	1	31	17	1	TRUE	DIPLOID	PASS
659_bTo_pair	RESP18	2	219327409	219333177	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	REST	4	56907876	56966678	FALSE	285	-0.676685623676823	22	55346376	64409389	0.291335969972972	1	0	0.291335969972972	1	0	9063013	1	23	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	RET	10	43077027	43130351	FALSE	640	-0.421497241268382	32	32269100	43094667	0.365165917639896	2	0	0.365165917639896	2	0	10825567	2	20	66	0	TRUE	CNLOH	PASS
659_bTo_pair	RETN	19	7669044	7670454	FALSE	1130	-0.690953718254595	21	7440128	7870576	0.140309795179477	0	0	0.140309795179477	0	0	430448	0	25	3	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RETNLB	3	108743424	108757384	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	3	0	FALSE	GAIN	PASS
659_bTo_pair	RETREG1	5	16473038	16617058	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	13	2	FALSE	GAIN	PASS
659_bTo_pair	RETREG2	2	219176225	219185479	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	RETREG3	17	42579513	42610623	FALSE	1038	-0.623371137159426	26	42404937	42698887	NA	2	NA	NA	2	NA	293950	NA	13	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RETSAT	2	85342088	85354620	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	12	3	FALSE	DIPLOID	PASS
659_bTo_pair	REV1	2	99400475	99490035	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	25	2	FALSE	DIPLOID	PASS
659_bTo_pair	REV3L	6	111299028	111483715	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	56	1	FALSE	DIPLOID	PASS
659_bTo_pair	REX1BD	19	18588685	18592336	FALSE	1159	-0.165917001507678	49	18177228	19138502	0.365165917639896	3	1	0.365165917639896	3	1	961274	2	36	6	0	FALSE	GAIN	PASS
659_bTo_pair	REXO1	19	1815246	1848463	FALSE	1118	-0.58059819545476	23	1775405	2151345	0.186356639256811	1	0	0.186356639256811	1	0	375940	1	13	23	3	FALSE	HETLOSS	PASS
659_bTo_pair	REXO2	11	114439386	114450279	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	REXO4	9	133406059	133418096	FALSE	627	-0.867007674319489	12	132986776	134157867	0.365165917639896	1	0	0.365165917639896	1	0	1171091	1	28	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	REXO5	16	20806429	20849668	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	RFC1	4	39287456	39366375	FALSE	280	-0.191477557443324	47	38829296	41740154	0.365165917639896	3	1	0.365165917639896	3	1	2910858	2	22	27	2	FALSE	GAIN	PASS
659_bTo_pair	RFC2	7	74231499	74254458	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	RFC3	13	33818049	33966558	FALSE	830	-0.745621963362667	19	32401848	39788354	0.365165917639896	1	0	0.365165917639896	1	0	7386506	1	30	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	RFC4	3	186789880	186807058	FALSE	264	1.37616970345013	87	186783296	186790183	0.364342740527346	16	NA	0.364342740527346	16	NA	6887	NA	2	10	1	TRUE	AMP	PASS
659_bTo_pair	RFC5	12	118013588	118033130	FALSE	808	-0.531025796359709	27	115966146	120090026	1	2	1	1	2	1	4123880	1	23	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	RFESD	5	95646754	95684773	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	RFFL	17	35005990	35089319	FALSE	1022	-0.670211431189836	22	32030679	35026358	0.291335969972972	1	0	0.291335969972972	1	0	2995679	1	23	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	RFK	9	76385517	76394517	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	RFLNA	12	123973241	124316024	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	RFLNB	17	439978	445939	FALSE	996	-0.883704003468192	13	148164	1298296	0.365165917639896	1	0	0.365165917639896	1	0	1150132	1	14	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	RFNG	17	82047902	82051831	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	RFPL1	22	29438583	29442455	FALSE	1259	-0.52695279651924	29	29311622	29581007	NA	2	NA	NA	2	NA	269385	NA	7	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RFPL2	22	32190435	32203477	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	7	0	FALSE	CNLOH	PASS
659_bTo_pair	RFPL3	22	32354885	32361161	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	5	0	FALSE	CNLOH	PASS
659_bTo_pair	RFPL4A	19	55759014	55763175	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	5	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RFPL4AL1	19	55769141	55773179	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	4	4	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RFPL4B	6	112347330	112351296	FALSE	415	-0.653130566834058	22	112072832	113860548	0.291335969972972	1	0	0.291335969972972	1	0	1787716	1	6	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	RFT1	3	53088483	53130462	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	14	2	FALSE	HETLOSS	PASS
659_bTo_pair	RFTN1	3	16313574	16514026	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	RFTN2	2	197568224	197676045	FALSE	163	-0.632896131155704	26	197453631	198083720	NA	2	NA	NA	2	NA	630089	NA	9	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RFWD3	16	74621394	74666881	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	RFX1	19	13961538	14007039	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	24	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RFX2	19	5993164	6199572	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	33	4	FALSE	DIPLOID	PASS
659_bTo_pair	RFX3	9	3218297	3526004	FALSE	574	-0.919846303005392	13	2198627	4849539	0.365165917639896	1	0	0.365165917639896	1	0	2650912	1	11	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	RFX4	12	106582907	106762803	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	21	2	FALSE	DIPLOID	PASS
659_bTo_pair	RFX5	1	151340640	151347357	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	RFX6	6	116877212	116932163	FALSE	417	-0.520434008170675	29	114058103	117272433	NA	2	NA	NA	2	NA	3214330	NA	20	22	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RFX7	15	56087280	56243266	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	22	1	FALSE	HETLOSS	PASS
659_bTo_pair	RFX8	2	101397361	101474703	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	RFXANK	19	19192229	19201869	FALSE	1161	-0.292613860626304	46	19182590	19465611	0.298322295679939	3	NA	0.298322295679939	3	NA	283021	NA	10	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RFXAP	13	36819224	36829104	FALSE	830	-0.745621963362667	19	32401848	39788354	0.365165917639896	1	0	0.365165917639896	1	0	7386506	1	30	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	RGCC	13	41457559	41470882	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	RGL1	1	183636085	183928531	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	26	1	FALSE	DIPLOID	PASS
659_bTo_pair	RGL2	6	33291654	33299324	FALSE	389	-0.565050845620731	23	33163789	33316917	0.186356639256811	1	0	0.186356639256811	1	0	153128	1	13	16	1	FALSE	HETLOSS	PASS
659_bTo_pair	RGL3	19	11384341	11419342	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	18	2	FALSE	DIPLOID	PASS
659_bTo_pair	RGL4	22	23688136	23699176	FALSE	1252	-0.948790128902656	11	23317677	23779437	0.289956079954009	0	0	0.289956079954009	0	0	461760	0	9	14	4	FALSE	HOMDEL	PASS
659_bTo_pair	RGMA	15	93035273	93089204	FALSE	930	1.18567329271683	84	92900289	93052530	0.364342740527346	14	NA	0.364342740527346	14	NA	152241	NA	3	9	0	TRUE	AMP	PASS
659_bTo_pair	RGMB	5	98768650	98798643	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	RGN	23	47078355	47093314	FALSE	1292	0.0982305969328026	59	45151653	47144467	0.308533751035793	5	NA	0.308533751035793	5	NA	1992814	NA	9	6	0	FALSE	AMP (many states)	PASS
659_bTo_pair	RGP1	9	35749287	35758575	FALSE	591	0.73474920581053	74	35684233	36036976	0.364342740527346	9	NA	0.364342740527346	9	NA	352743	NA	17	11	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	RGPD1	2	86907953	87013976	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	RGPD2	2	87755955	87825952	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	RGPD3	2	106391290	106468376	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	26	4	FALSE	DIPLOID	PASS
659_bTo_pair	RGPD4	2	107826937	107890841	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	28	8	FALSE	DIPLOID	PASS
659_bTo_pair	RGPD6	2	110513812	110577185	FALSE	134	-0.415117895462051	39	108786846	111117811	NA	2	NA	NA	2	NA	2330965	NA	16	1	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RGPD8	2	112370092	112434488	FALSE	138	-0.423459519967032	34	112060069	113201423	NA	2	NA	NA	2	NA	1141354	NA	21	17	4	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RGR	10	84245053	84259960	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	7	0	FALSE	CNLOH	PASS
659_bTo_pair	RGS1	1	192575727	192580031	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	RGS10	10	119499828	119542708	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	6	0	FALSE	CNLOH	PASS
659_bTo_pair	RGS11	16	268301	275980	FALSE	934	-0.725703643263354	19	47610	287124	0.365165917639896	1	0	0.365165917639896	1	0	239514	1	16	15	2	FALSE	HETLOSS	PASS
659_bTo_pair	RGS12	4	3293028	3439913	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	28	3	FALSE	GAIN	PASS
659_bTo_pair	RGS13	1	192636138	192660306	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	RGS14	5	177357837	177372601	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	RGS16	1	182598623	182604408	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	RGS17	6	153004459	153131249	FALSE	440	-0.500001062559341	30	152129628	156771069	1	2	1	1	2	1	4641441	1	14	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	RGS18	1	192158457	192185815	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	RGS19	20	64073181	64079988	FALSE	1225	-0.32421417626258	43	63733191	64273510	0.192136715055622	3	NA	0.192136715055622	3	NA	540319	NA	22	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RGS2	1	192809039	192812283	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	RGS20	8	53851808	53959303	FALSE	543	-0.403572692824667	39	47962754	54147613	NA	2	NA	NA	2	NA	6184859	NA	18	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RGS21	1	192316992	192367285	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	RGS22	8	99960936	100131268	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	30	0	FALSE	GAIN	PASS
659_bTo_pair	RGS3	9	113444731	113597743	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	34	0	FALSE	DIPLOID	PASS
659_bTo_pair	RGS4	1	163068775	163076802	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	RGS5	1	163111121	163321791	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	RGS6	14	71932439	72566529	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	RGS7	1	240775515	241357230	FALSE	82	-0.550278310688863	27	235196044	241494870	1	2	1	1	2	1	6298826	1	22	18	2	FALSE	DIPLOID	PASS
659_bTo_pair	RGS7BP	5	64506257	64612312	FALSE	323	-0.645106866010582	25	58495036	67196614	0.365165917639896	1	0	0.365165917639896	1	0	8701578	1	31	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	RGS8	1	182641816	182684576	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	RGS9	17	65100812	65227703	FALSE	1068	-1.00765117414629	8	65137506	65227355	0.342391532111247	0	0	0.342391532111247	0	0	89849	0	1	20	0	FALSE	HOMDEL	PASS
659_bTo_pair	RGS9BP	19	32675407	32678300	FALSE	1165	-0.570153591761829	23	29923697	33225768	0.186356639256811	1	0	0.186356639256811	1	0	3302071	1	18	3	2	FALSE	HETLOSS	PASS
659_bTo_pair	RGSL1	1	182409192	182560599	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	24	4	FALSE	DIPLOID	PASS
659_bTo_pair	RHAG	6	49605158	49636884	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	RHBDD1	2	226835581	226999215	FALSE	185	1.82189603906799	100	226731574	226865039	0.364342740527346	23	NA	0.364342740527346	23	NA	133465	NA	2	7	0	TRUE	AMP	PASS
659_bTo_pair	RHBDD2	7	75842602	75888926	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	RHBDD3	22	29259852	29268209	FALSE	1257	-0.782237459575943	16	29058831	29265673	0.365165917639896	1	0	0.365165917639896	1	0	206842	1	4	9	2	TRUE	HETLOSS	PASS
659_bTo_pair	RHBDF1	16	58059	76355	FALSE	934	-0.725703643263354	19	47610	287124	0.365165917639896	1	0	0.365165917639896	1	0	239514	1	16	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	RHBDF2	17	76470891	76501790	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	18	1	FALSE	DIPLOID	PASS
659_bTo_pair	RHBDL1	16	675666	678268	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	9	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RHBDL2	1	38885807	38941799	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	RHBDL3	17	32266176	32324661	FALSE	1022	-0.670211431189836	22	32030679	35026358	0.291335969972972	1	0	0.291335969972972	1	0	2995679	1	23	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	RHBG	1	156369212	156385219	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	10	2	FALSE	DIPLOID	PASS
659_bTo_pair	RHCE	1	25362249	25430192	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	RHCG	15	89471398	89496613	FALSE	925	-0.863518905667221	13	89317527	90079704	0.365165917639896	1	0	0.365165917639896	1	0	762177	1	14	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	RHD	1	25272393	25330445	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	RHEB	7	151466012	151520120	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	RHEBL1	12	49064685	49070025	FALSE	770	-0.500134310902258	34	49065087	50081631	NA	2	NA	NA	2	NA	1016544	NA	25	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RHEX	1	206052723	206102459	FALSE	69	-0.48847123055109	34	205798087	206732058	NA	2	NA	NA	2	NA	933971	NA	14	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RHNO1	12	2876258	2889523	FALSE	739	-0.369471841682825	39	1104785	3873202	NA	2	NA	NA	2	NA	2768417	NA	20	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RHO	3	129528640	129535169	FALSE	240	-0.311262736248051	40	128620554	130098189	0.308149309490068	3	1	0.308149309490068	3	1	1477635	2	22	7	0	FALSE	GAIN	PASS
659_bTo_pair	RHOA	3	49359145	49412998	FALSE	217	1.43233135236461	88	49359318	49412651	0.364342740527346	17	NA	0.364342740527346	17	NA	53333	NA	2	16	0	FALSE	AMP	PASS
659_bTo_pair	RHOB	2	20447074	20449445	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RHOBTB1	10	60869438	61001440	FALSE	644	-0.637578894715957	26	60871631	61765979	NA	2	NA	NA	2	NA	894348	NA	3	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RHOBTB2	8	22987417	23020199	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	RHOBTB3	5	95713522	95824383	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	RHOC	1	112701106	112707434	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	RHOD	11	67056818	67072013	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	5	0	FALSE	GAIN	PASS
659_bTo_pair	RHOF	12	121777754	121803403	FALSE	812	-0.468438273619664	34	121006302	121793667	NA	2	NA	NA	2	NA	787365	NA	12	5	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RHOG	11	3826978	3840983	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	RHOH	4	40191053	40246967	FALSE	280	-0.191477557443324	47	38829296	41740154	0.365165917639896	3	1	0.365165917639896	3	1	2910858	2	22	3	0	FALSE	GAIN	PASS
659_bTo_pair	RHOJ	14	63204114	63293219	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	RHOQ	2	46541806	46583121	FALSE	108	-0.751130758275331	19	46479657	47176488	0.365165917639896	1	0	0.365165917639896	1	0	696831	1	11	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	RHOT1	17	32142454	32253374	FALSE	1022	-0.670211431189836	22	32030679	35026358	0.291335969972972	1	0	0.291335969972972	1	0	2995679	1	23	21	2	FALSE	HETLOSS	PASS
659_bTo_pair	RHOT2	16	668086	674174	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	16	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RHOU	1	228735077	228746669	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	RHOV	15	40872214	40874289	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	RHOXF1	23	120109053	120115937	FALSE	1328	0.070674287613007	59	119603543	121049335	0.308533751035793	5	NA	0.308533751035793	5	NA	1445792	NA	34	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	RHOXF2	23	120158561	120165630	FALSE	1328	0.070674287613007	59	119603543	121049335	0.308533751035793	5	NA	0.308533751035793	5	NA	1445792	NA	34	3	1	FALSE	AMP (many states)	PASS
659_bTo_pair	RHOXF2B	23	120070672	120077705	FALSE	1328	0.070674287613007	59	119603543	121049335	0.308533751035793	5	NA	0.308533751035793	5	NA	1445792	NA	34	1	0	FALSE	AMP (many states)	PASS
659_bTo_pair	RHPN1	8	143368887	143384220	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	15	2	FALSE	DIPLOID	PASS
659_bTo_pair	RHPN2	19	32978593	33064888	FALSE	1165	-0.570153591761829	23	29923697	33225768	0.186356639256811	1	0	0.186356639256811	1	0	3302071	1	18	17	2	FALSE	HETLOSS	PASS
659_bTo_pair	RIBC1	23	53422690	53431120	FALSE	1302	2.58849784052379	115	53374390	53422716	0.364342740527346	42	NA	0.364342740527346	42	NA	48326	NA	2	10	0	TRUE	AMP	PASS
659_bTo_pair	RIBC2	22	45413691	45432496	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	9	2	FALSE	CNLOH	PASS
659_bTo_pair	RIC1	9	5629025	5776557	FALSE	578	1.99473684462552	104	5467901	5629429	0.364342740527346	27	NA	0.364342740527346	27	NA	161528	NA	3	30	0	TRUE	AMP	PASS
659_bTo_pair	RIC3	11	8106093	8169055	FALSE	683	-0.403180715137318	35	6615199	8138345	1	2	1	1	2	1	1523146	1	28	10	1	TRUE	DIPLOID	PASS
659_bTo_pair	RIC8A	11	207511	215113	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	12	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RIC8B	12	106774595	106889316	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	RICTOR	5	38937919	39074408	FALSE	315	1.2449656098851	84	38925355	39003537	0.364342740527346	14	NA	0.364342740527346	14	NA	78182	NA	2	60	5	TRUE	AMP	PASS
659_bTo_pair	RIDA	8	98102344	98117241	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	6	0	FALSE	GAIN	PASS
659_bTo_pair	RIF1	2	151409883	151508013	FALSE	149	-0.454179855872301	30	147845197	157628657	1	2	1	1	2	1	9783460	1	30	68	8	FALSE	DIPLOID	PASS
659_bTo_pair	RIIAD1	1	151710433	151729805	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	7	2	FALSE	DIPLOID	PASS
659_bTo_pair	RILP	17	1646145	1650077	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	RILPL1	12	123470054	123533718	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	RILPL2	12	123410683	123436717	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	RIMBP2	12	130396137	130716281	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	28	1	FALSE	DIPLOID	PASS
659_bTo_pair	RIMBP3	22	18605815	18611919	FALSE	1240	-0.594689860601271	26	15528179	18606839	NA	2	NA	NA	2	NA	3078660	NA	21	11	2	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	RIMBP3B	22	21383374	21389478	FALSE	1246	-0.481954888210425	34	21001894	21693896	NA	2	NA	NA	2	NA	692002	NA	14	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RIMKLA	1	42380795	42422578	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	RIMKLB	12	8681600	8783095	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	RIMS1	6	71886703	72403143	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	45	1	FALSE	DIPLOID	PASS
659_bTo_pair	RIMS2	8	103500748	104256094	FALSE	561	-0.210477706860293	47	102652438	116770243	0.365165917639896	3	1	0.365165917639896	3	1	14117805	2	32	44	2	FALSE	GAIN	PASS
659_bTo_pair	RIMS3	1	40620679	40665657	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	RIMS4	20	44751808	44810338	FALSE	1210	-0.476296426145969	34	43513997	45110019	NA	2	NA	NA	2	NA	1596022	NA	26	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RIN1	11	66330242	66336840	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	14	0	FALSE	GAIN	PASS
659_bTo_pair	RIN2	20	19757606	20002459	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	18	1	FALSE	DIPLOID	PASS
659_bTo_pair	RIN3	14	92513774	92688994	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	20	2	FALSE	DIPLOID	PASS
659_bTo_pair	RING1	6	33208495	33212722	FALSE	389	-0.565050845620731	23	33163789	33316917	0.186356639256811	1	0	0.186356639256811	1	0	153128	1	13	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	RINL	19	38867834	38878279	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	RINT1	7	105532085	105567677	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	18	1	FALSE	DIPLOID	PASS
659_bTo_pair	RIOK1	6	7389496	7418037	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	RIOK2	5	97160867	97183260	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	13	3	FALSE	HETLOSS	PASS
659_bTo_pair	RIOK3	18	23452823	23486603	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	13	2	FALSE	GAIN	PASS
659_bTo_pair	RIOX1	14	73490964	73493392	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	RIOX2	3	97941818	97972457	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	12	0	FALSE	GAIN	PASS
659_bTo_pair	RIPK1	6	3063991	3115187	FALSE	367	1.47285136172973	90	3076905	3118764	0.364342740527346	17	NA	0.364342740527346	17	NA	41859	NA	2	13	0	FALSE	AMP	PASS
659_bTo_pair	RIPK2	8	89757747	89791063	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	12	1	FALSE	GAIN	PASS
659_bTo_pair	RIPK3	14	24336021	24340045	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	RIPK4	21	41739369	41767106	FALSE	1234	-0.544212636077936	27	41740855	44141314	1	2	1	1	2	1	2400459	1	31	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	RIPOR1	16	67518418	67546788	FALSE	976	-0.467350965811123	34	67110264	67538977	NA	2	NA	NA	2	NA	428713	NA	24	27	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	RIPOR2	6	24804281	25042170	FALSE	373	-0.695027086668472	22	24174718	26017145	0.291335969972972	1	0	0.291335969972972	1	0	1842427	1	23	31	1	FALSE	HETLOSS	PASS
659_bTo_pair	RIPOR3	20	50586108	50691528	FALSE	1218	-0.459978768286429	34	50587211	53185754	NA	2	NA	NA	2	NA	2598543	NA	12	25	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RIPPLY1	23	106900063	106903335	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	RIPPLY2	6	83853266	83857515	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	RIPPLY3	21	37006150	37019659	FALSE	1228	-0.430637379115077	30	36009679	38367602	1	2	1	1	2	1	2357923	1	17	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	RIT1	1	155897808	155911404	FALSE	50	1.53925434535977	91	155897881	155911373	0.364342740527346	18	NA	0.364342740527346	18	NA	13492	NA	1	17	0	FALSE	AMP	PASS
659_bTo_pair	RIT2	18	42743227	43115691	FALSE	1098	-0.618424500548994	26	42085793	43277316	NA	2	NA	NA	2	NA	1191523	NA	3	6	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RITA1	12	113185526	113192368	FALSE	806	-0.481242901669781	30	113099979	114403736	1	2	1	1	2	1	1303757	1	13	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	RLBP1	15	89209869	89221751	FALSE	923	-0.958549275925123	11	88459674	89218937	0.289956079954009	0	0	0.289956079954009	0	0	759263	0	11	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RLF	1	40161373	40240921	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	26	0	FALSE	DIPLOID	PASS
659_bTo_pair	RLIM	23	74585217	74614617	FALSE	1317	0.217996879888221	62	71533297	76176924	0.364342740527346	5	NA	0.364342740527346	5	NA	4643627	NA	35	9	0	FALSE	AMP (many states)	PASS
659_bTo_pair	RLN1	9	5334969	5339873	FALSE	577	-0.270687969755387	46	5163973	5467073	0.298322295679939	3	NA	0.298322295679939	3	NA	303100	NA	6	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RLN2	9	5299868	5304969	FALSE	577	-0.270687969755387	46	5163973	5467073	0.298322295679939	3	NA	0.298322295679939	3	NA	303100	NA	6	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RLN3	19	14028148	14031042	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	4	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	RMC1	18	23503470	23531807	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	20	1	FALSE	GAIN	PASS
659_bTo_pair	RMDN1	8	86468257	86514357	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	11	2	FALSE	GAIN	PASS
659_bTo_pair	RMDN2	2	37923187	38067142	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	RMDN3	15	40735884	40755851	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	RMI1	9	83980711	84004074	FALSE	600	-0.379943666479055	39	84001060	84731654	NA	2	NA	NA	2	NA	730594	NA	3	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RMI2	16	11249619	11381662	FALSE	953	0.745805771431006	74	11178388	11281274	0.364342740527346	9	NA	0.364342740527346	9	NA	102886	NA	7	31	2	TRUE	INDETERMINATE	PASS
659_bTo_pair	RMND1	6	151404762	151452181	FALSE	438	-0.675524335299184	22	151405234	151618046	0.291335969972972	1	0	0.291335969972972	1	0	212812	1	3	12	2	FALSE	HETLOSS	PASS
659_bTo_pair	RMND5A	2	86720173	86778041	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	RMND5B	5	178130996	178150565	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	RNASE1	14	20801228	20803278	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	RNASE10	14	20505537	20511169	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	RNASE11	14	20583559	20609884	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	RNASE12	14	20590193	20590823	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	RNASE13	14	21032820	21034785	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	RNASE2	14	20955452	20956436	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	RNASE3	14	20891399	20892348	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	RNASE4	14	20684100	20701215	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	RNASE6	14	20781051	20782467	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	RNASE7	14	21042226	21044234	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	2	1	FALSE	DIPLOID	PASS
659_bTo_pair	RNASE8	14	21057822	21058455	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	RNASE9	14	20556093	20560931	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	RNASEH1	2	3544793	3558616	FALSE	89	-0.524158836377085	27	41620	3847167	1	2	1	1	2	1	3805547	1	18	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	RNASEH2A	19	12806556	12815201	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	RNASEH2B	13	50909678	51024120	FALSE	835	-0.766581964775609	19	48490223	50953919	0.365165917639896	1	0	0.365165917639896	1	0	2463696	1	18	12	0	TRUE	HETLOSS	PASS
659_bTo_pair	RNASEH2C	11	65714005	65720947	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	12	0	FALSE	GAIN	PASS
659_bTo_pair	RNASEK	17	7012417	7014532	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	RNASEK-C17orf49	17	7012635	7017520	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	RNASEL	1	182573634	182589256	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	RNASET2	6	166929504	166957191	FALSE	447	-0.721809212356928	19	165280135	167033904	0.365165917639896	1	0	0.365165917639896	1	0	1753769	1	11	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	RND1	12	48857145	48865898	FALSE	768	-0.491963868457131	34	48045387	49018767	NA	2	NA	NA	2	NA	973380	NA	28	5	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RND2	17	43025241	43032036	FALSE	1040	-0.646197503395479	26	42761348	43039396	NA	2	NA	NA	2	NA	278048	NA	18	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RND3	2	150468195	150539011	FALSE	149	-0.454179855872301	30	147845197	157628657	1	2	1	1	2	1	9783460	1	30	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	RNF10	12	120533480	120577594	FALSE	810	-0.438737881374958	34	120127967	120903912	NA	2	NA	NA	2	NA	775945	NA	20	18	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RNF103	2	86603393	86623866	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	RNF103-CHMP3	2	86505668	86721122	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	RNF11	1	51236271	51273455	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	RNF111	15	58865175	59097419	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	43	2	FALSE	HETLOSS	PASS
659_bTo_pair	RNF112	17	19411125	19417276	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	15	0	FALSE	CNLOH	PASS
659_bTo_pair	RNF113A	23	119870475	119871827	FALSE	1328	0.070674287613007	59	119603543	121049335	0.308533751035793	5	NA	0.308533751035793	5	NA	1445792	NA	34	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	RNF113B	13	98175785	98177265	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	5	0	FALSE	CNLOH	PASS
659_bTo_pair	RNF114	20	49936336	49953892	FALSE	1216	-0.465272765977354	30	47658376	50278257	1	2	1	1	2	1	2619881	1	18	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	RNF115	1	145738868	145824077	FALSE	44	-0.0508975396039555	55	119911615	146019534	0.328696605851359	4	NA	0.328696605851359	4	NA	26107919	NA	33	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RNF121	11	71928701	71997597	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	9	0	FALSE	GAIN	PASS
659_bTo_pair	RNF122	8	33547755	33567125	FALSE	528	-1.13877676700397	7	33372685	36932925	0.365165917639896	0	0	0.365165917639896	0	0	3560240	0	7	6	1	FALSE	HOMDEL	PASS
659_bTo_pair	RNF123	3	49689499	49721529	FALSE	219	0.670949051201359	72	49683278	49694592	0.364342740527346	8	NA	0.364342740527346	8	NA	11314	NA	3	46	3	TRUE	INDETERMINATE	PASS
659_bTo_pair	RNF125	18	32018372	32073213	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	6	1	FALSE	GAIN	PASS
659_bTo_pair	RNF126	19	647526	663277	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	10	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RNF128	23	106693794	106796993	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	11	0	FALSE	AMP (many states)	PASS
659_bTo_pair	RNF13	3	149812708	149962139	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	10	0	FALSE	GAIN	PASS
659_bTo_pair	RNF130	5	179911651	180072118	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	RNF133	7	122697712	122699156	FALSE	490	-0.576498321273708	26	116888215	124790543	NA	2	NA	NA	2	NA	7902328	NA	33	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RNF135	17	30968785	30999911	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	RNF138	18	32091855	32131561	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	7	0	FALSE	GAIN	PASS
659_bTo_pair	RNF139	8	124474738	124487914	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	9	2	FALSE	GAIN	PASS
659_bTo_pair	RNF14	5	141958328	141990291	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RNF141	11	10511678	10541230	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	RNF144A	2	6917392	7068286	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	RNF144B	6	18387350	18468874	FALSE	370	-0.377368469329801	39	15246548	20212233	NA	2	NA	NA	2	NA	4965685	NA	18	7	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RNF145	5	159157409	159210053	FALSE	353	-0.698571741790457	22	157138801	161546576	0.291335969972972	1	0	0.291335969972972	1	0	4407775	1	29	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	RNF146	6	127266610	127288567	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	RNF148	7	122701664	122702967	FALSE	490	-0.576498321273708	26	116888215	124790543	NA	2	NA	NA	2	NA	7902328	NA	33	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RNF149	2	101271219	101308701	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	RNF150	4	140859807	141212877	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	RNF151	16	1966823	1968975	FALSE	938	-0.541386594301884	29	1947002	2038739	NA	2	NA	NA	2	NA	91737	NA	11	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RNF152	18	61808063	61894247	FALSE	1109	-0.86662286323735	13	60372339	62975524	0.365165917639896	1	0	0.365165917639896	1	0	2603185	1	8	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	RNF157	17	76142453	76240373	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	RNF165	18	46326809	46463140	FALSE	1100	-0.758401070483502	19	45624783	47803983	0.365165917639896	1	0	0.365165917639896	1	0	2179200	1	22	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	RNF166	16	88696495	88706421	FALSE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	6	2	FALSE	HETLOSS	PASS
659_bTo_pair	RNF167	17	4940008	4945222	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	RNF168	3	196468783	196503768	FALSE	271	-0.194588974812627	47	196198492	198169864	0.365165917639896	3	1	0.365165917639896	3	1	1971372	2	29	10	1	FALSE	GAIN	PASS
659_bTo_pair	RNF169	11	74748868	74842413	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	11	0	FALSE	GAIN	PASS
659_bTo_pair	RNF17	13	24764152	24879921	FALSE	824	-0.820211361281197	14	23365275	27988570	0.365165917639896	1	0	0.365165917639896	1	0	4623295	1	32	38	0	FALSE	HETLOSS	PASS
659_bTo_pair	RNF170	8	42849637	42897290	FALSE	541	-0.815492706726597	16	42338595	47735321	0.365165917639896	1	0	0.365165917639896	1	0	5396726	1	15	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	RNF175	4	153710125	153760235	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	RNF180	5	64165844	64372869	FALSE	323	-0.645106866010582	25	58495036	67196614	0.365165917639896	1	0	0.365165917639896	1	0	8701578	1	31	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	RNF181	2	85595725	85597613	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	RNF182	6	13924446	13980302	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	3	0	TRUE	DIPLOID	PASS
659_bTo_pair	RNF183	9	113297093	113303376	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	RNF185	22	31160183	31207019	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	6	0	FALSE	CNLOH	PASS
659_bTo_pair	RNF186	1	19814029	19815278	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	RNF187	1	228487061	228495766	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	RNF19A	8	100257060	100336218	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	13	0	FALSE	GAIN	PASS
659_bTo_pair	RNF19B	1	32936445	32964685	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	RNF2	1	185045364	185102608	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	RNF20	9	101533851	101563344	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	20	5	FALSE	DIPLOID	PASS
659_bTo_pair	RNF207	1	6205475	6221299	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	16	2	FALSE	DIPLOID	PASS
659_bTo_pair	RNF208	9	137220247	137221581	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	RNF212	4	1056250	1113562	FALSE	272	-0.300029378244858	40	85877	1745020	0.308149309490068	3	1	0.308149309490068	3	1	1659143	2	29	14	0	FALSE	GAIN	PASS
659_bTo_pair	RNF212B	14	23185316	23273477	FALSE	850	-0.604709518345526	26	22902059	23302562	NA	2	NA	NA	2	NA	400503	NA	18	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RNF213	17	80260866	80398786	FALSE	1081	-0.503130193321286	34	78873805	80288187	NA	2	NA	NA	2	NA	1414382	NA	19	93	4	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	RNF214	11	117232625	117286445	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	RNF215	22	30368811	30421771	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	32	0	FALSE	CNLOH	PASS
659_bTo_pair	RNF216	7	5620047	5781739	FALSE	455	0.0869447764468888	59	5592963	6026819	0.308533751035793	5	NA	0.308533751035793	5	NA	433856	NA	8	20	1	FALSE	AMP (many states)	PASS
659_bTo_pair	RNF217	6	124962545	125092633	FALSE	421	-0.534093125771784	29	117482879	126348569	NA	2	NA	NA	2	NA	8865690	NA	29	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RNF219	13	78614291	78659179	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	13	0	FALSE	CNLOH	PASS
659_bTo_pair	RNF220	1	44405194	44651724	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	RNF222	17	8390704	8397826	FALSE	1006	-0.894220729735546	12	8370429	10825247	0.365165917639896	1	0	0.365165917639896	1	0	2454818	1	31	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	RNF223	1	1070966	1074307	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	3	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RNF224	9	137227271	137229638	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	RNF225	19	58396090	58397079	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	4	0	FALSE	GAIN	PASS
659_bTo_pair	RNF227	17	7913324	7916276	FALSE	1002	-0.806633716627379	14	7689340	8047671	0.365165917639896	1	0	0.365165917639896	1	0	358331	1	15	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	RNF24	20	3927309	4015582	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	RNF25	2	218663864	218672411	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	RNF26	11	119334527	119337313	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	RNF31	14	24146683	24160661	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	24	1	FALSE	DIPLOID	PASS
659_bTo_pair	RNF32	7	156640281	156677130	FALSE	509	-0.56054035608462	23	152759958	159144708	0.186356639256811	1	0	0.186356639256811	1	0	6384750	1	20	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	RNF34	12	121400041	121430623	FALSE	812	-0.468438273619664	34	121006302	121793667	NA	2	NA	NA	2	NA	787365	NA	12	10	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RNF38	9	36336396	36487548	FALSE	592	-0.0369931589847324	55	36052313	36828293	0.328696605851359	4	NA	0.328696605851359	4	NA	775980	NA	7	12	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RNF39	6	30070266	30075887	FALSE	377	-0.687880370218139	22	29953381	30346790	0.291335969972972	1	0	0.291335969972972	1	0	393409	1	11	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	RNF4	4	2462220	2625320	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	9	0	FALSE	GAIN	PASS
659_bTo_pair	RNF40	16	30761745	30776307	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	RNF41	12	56202175	56221933	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RNF43	17	58352500	58417595	TRUE	1056	2.33438374168727	110	58353864	58358748	0.364342740527346	34	NA	0.364342740527346	34	NA	4884	NA	2	39	3	TRUE	AMP	PASS
659_bTo_pair	RNF44	5	176526697	176538025	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	RNF5	6	32178354	32180793	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	5	2	FALSE	HETLOSS	PASS
659_bTo_pair	RNF6	13	26132115	26222493	FALSE	824	-0.820211361281197	14	23365275	27988570	0.365165917639896	1	0	0.365165917639896	1	0	4623295	1	32	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	RNF7	3	141738204	141747560	FALSE	246	-0.322519280750539	43	139344000	142447976	0.192136715055622	3	NA	0.192136715055622	3	NA	3103976	NA	19	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RNF8	6	37353972	37394738	FALSE	397	-0.509151429367598	27	37213022	41687167	1	2	1	1	2	1	4474145	1	33	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	RNFT1	17	59952240	59964761	FALSE	1060	-0.47151484718074	34	59953129	60500406	NA	2	NA	NA	2	NA	547277	NA	7	10	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RNFT2	12	116738178	116853631	FALSE	808	-0.531025796359709	27	115966146	120090026	1	2	1	1	2	1	4123880	1	23	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	RNGTT	6	88610272	88963721	FALSE	407	-0.739487270214454	18	87337082	88963417	0.180216333675297	0	0	0.180216333675297	0	0	1626335	0	11	17	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RNH1	11	494512	507300	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	11	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RNLS	10	88273864	88584530	FALSE	658	-0.534531933000134	29	88275028	88948930	NA	2	NA	NA	2	NA	673902	NA	9	8	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RNMT	18	13726660	13764558	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	12	0	FALSE	GAIN	PASS
659_bTo_pair	RNPC3	1	103525691	103555239	FALSE	32	-0.441874489475641	34	100273343	107324874	NA	2	NA	NA	2	NA	7051531	NA	18	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RNPEP	1	201982372	202006147	FALSE	62	-0.579638700609711	26	201899486	202005559	NA	2	NA	NA	2	NA	106073	NA	3	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RNPEPL1	2	240565804	240581372	FALSE	194	-0.588828356865968	23	240025214	241817025	0.186356639256811	1	0	0.186356639256811	1	0	1791811	1	34	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	RNPS1	16	2253116	2268412	FALSE	942	-0.803500535593988	16	2178660	2530995	0.365165917639896	1	0	0.365165917639896	1	0	352335	1	18	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ROBO1	3	78597240	79767815	TRUE	232	-0.785224171872638	14	72888305	88156485	0.365165917639896	1	0	0.365165917639896	1	0	15268180	1	18	38	2	FALSE	HETLOSS	PASS
659_bTo_pair	ROBO2	3	75906695	77649964	FALSE	232	-0.785224171872638	14	72888305	88156485	0.365165917639896	1	0	0.365165917639896	1	0	15268180	1	18	33	1	FALSE	HETLOSS	PASS
659_bTo_pair	ROBO3	11	124865386	124881470	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	33	0	FALSE	DIPLOID	PASS
659_bTo_pair	ROBO4	11	124883691	124898500	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	21	2	FALSE	DIPLOID	PASS
659_bTo_pair	ROCK1	18	20946906	21111851	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	34	0	FALSE	GAIN	PASS
659_bTo_pair	ROCK2	2	11179761	11348330	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	36	1	FALSE	DIPLOID	PASS
659_bTo_pair	ROGDI	16	4796968	4802950	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	ROM1	11	62611722	62615120	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ROMO1	20	35699272	35700984	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	ROPN1	3	123968521	123992178	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	5	1	FALSE	GAIN	PASS
659_bTo_pair	ROPN1B	3	125969144	125983454	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	5	0	FALSE	GAIN	PASS
659_bTo_pair	ROPN1L	5	10441524	10472029	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	5	0	FALSE	GAIN	PASS
659_bTo_pair	ROR1	1	63774022	64181498	FALSE	21	-0.414935064922519	39	59321678	64830856	NA	2	NA	NA	2	NA	5509178	NA	22	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ROR2	9	91563091	91950162	FALSE	606	-0.547644280946133	27	91214370	95094057	1	2	1	1	2	1	3879687	1	31	17	3	FALSE	DIPLOID	PASS
659_bTo_pair	RORA	15	60488284	61229319	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	17	1	FALSE	HETLOSS	PASS
659_bTo_pair	RORB	9	74497365	74693177	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	RORC	1	151806071	151831872	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	ROS1	6	117288300	117425855	FALSE	418	0.416627486556076	66	117288366	117314202	0.364342740527346	7	NA	0.364342740527346	7	NA	25836	NA	1	148	26	TRUE	INDETERMINATE	PASS
659_bTo_pair	RP1	8	54509422	54871720	FALSE	545	0.0328509510438924	56	54463210	55824671	0.365165917639896	4	NA	0.365165917639896	4	NA	1361461	NA	4	27	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RP1L1	8	10606349	10712187	FALSE	515	-0.798201426688095	16	9008002	10611590	0.365165917639896	1	0	0.365165917639896	1	0	1603588	1	7	33	7	TRUE	HETLOSS	PASS
659_bTo_pair	RP2	23	46836940	46882358	FALSE	1292	0.0982305969328026	59	45151653	47144467	0.308533751035793	5	NA	0.308533751035793	5	NA	1992814	NA	9	7	0	FALSE	AMP (many states)	PASS
659_bTo_pair	RP9	7	33094797	33109401	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	7	0	FALSE	GAIN	PASS
659_bTo_pair	RPA1	17	1829702	1900082	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	RPA2	1	27891524	27914746	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	RPA3	7	7636518	7718607	FALSE	456	-0.240618790532325	45	6028682	12688782	0.279823559258657	3	0	0.279823559258657	3	0	6660100	3	32	5	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	RPA4	23	96883908	96885467	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	4	1	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	RPAIN	17	5419641	5432876	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	RPAP1	15	41517176	41544269	FALSE	894	-0.874433234740196	13	41183964	41662415	0.365165917639896	1	0	0.365165917639896	1	0	478451	1	12	28	6	FALSE	HETLOSS	PASS
659_bTo_pair	RPAP2	1	92298965	92402056	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	RPAP3	12	47661249	47706061	FALSE	766	-0.557616146966431	26	45922034	47968195	NA	2	NA	NA	2	NA	2046161	NA	13	17	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RPE	2	210002565	210022259	FALSE	171	-0.69211072472077	22	209829280	210677970	0.291335969972972	1	0	0.291335969972972	1	0	848690	1	7	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	RPE65	1	68428822	68449959	FALSE	23	-0.326404897444941	43	65224778	71080923	0.192136715055622	3	NA	0.192136715055622	3	NA	5856145	NA	29	14	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RPEL1	10	103245887	103248016	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	3	0	FALSE	CNLOH	PASS
659_bTo_pair	RPF1	1	84479259	84497790	FALSE	27	-0.365760579101575	39	77969065	85252731	NA	2	NA	NA	2	NA	7283666	NA	23	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RPF2	6	110982015	111028263	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	RPGR	23	38269163	38327564	FALSE	1286	-0.229369008369366	46	37655739	38687617	0.298322295679939	3	NA	0.298322295679939	3	NA	1031878	NA	12	22	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RPGRIP1	14	21287939	21351301	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	26	3	FALSE	DIPLOID	PASS
659_bTo_pair	RPGRIP1L	16	53598153	53703938	FALSE	968	-0.505434692233225	30	51151209	56683230	1	2	1	1	2	1	5532021	1	34	29	0	FALSE	DIPLOID	PASS
659_bTo_pair	RPH3A	12	112570380	112898881	FALSE	804	-0.570470066809856	26	112828356	113010483	NA	2	NA	NA	2	NA	182127	NA	4	21	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RPH3AL	17	212389	386254	FALSE	996	-0.883704003468192	13	148164	1298296	0.365165917639896	1	0	0.365165917639896	1	0	1150132	1	14	11	2	FALSE	HETLOSS	PASS
659_bTo_pair	RPIA	2	88691644	88750935	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	RPL10	23	154389955	154409168	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	14	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	RPL10A	6	35468408	35470785	FALSE	392	-0.183129995366178	48	35241630	35475885	0.365165917639896	3	NA	0.365165917639896	3	NA	234255	NA	7	4	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	RPL10L	14	46651010	46651821	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	RPL11	1	23691742	23696835	FALSE	9	0.0247469375259084	56	23553811	23757004	0.365165917639896	4	NA	0.365165917639896	4	NA	203193	NA	3	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RPL12	9	127447674	127451405	FALSE	619	-0.820686000870706	14	125203036	127778681	0.365165917639896	1	0	0.365165917639896	1	0	2575645	1	23	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	RPL13	16	89560657	89566828	FALSE	991	-0.654420383530572	22	89508463	89733977	0.291335969972972	1	0	0.291335969972972	1	0	225514	1	10	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	RPL13A	19	49487554	49492308	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	RPL14	3	40457292	40468587	FALSE	212	-0.750996176556328	19	38165958	40533064	0.365165917639896	1	0	0.365165917639896	1	0	2367106	1	26	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	RPL15	3	23916545	23924374	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	RPL17	18	49488453	49492523	FALSE	1103	-0.712987700962632	19	48029643	51023578	0.365165917639896	1	0	0.365165917639896	1	0	2993935	1	20	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	RPL17-C18orf32	18	49481681	49492479	FALSE	1103	-0.712987700962632	19	48029643	51023578	0.365165917639896	1	0	0.365165917639896	1	0	2993935	1	20	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	RPL18	19	48615328	48619536	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	RPL18A	19	17859876	17864153	FALSE	1157	-0.332253297419471	43	17859980	18149705	0.192136715055622	3	NA	0.192136715055622	3	NA	289725	NA	7	6	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	RPL19	17	39200283	39204732	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RPL21	13	27251309	27256691	FALSE	824	-0.820211361281197	14	23365275	27988570	0.365165917639896	1	0	0.365165917639896	1	0	4623295	1	32	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	RPL22	1	6185020	6209389	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	RPL22L1	3	170864875	170870483	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	4	0	FALSE	GAIN	PASS
659_bTo_pair	RPL23	17	38847865	38853843	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RPL23A	17	28719393	28724359	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	RPL24	3	101681091	101686782	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	6	1	FALSE	GAIN	PASS
659_bTo_pair	RPL26	17	8377516	8383250	FALSE	1006	-0.894220729735546	12	8370429	10825247	0.365165917639896	1	0	0.365165917639896	1	0	2454818	1	31	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	RPL26L1	5	172958729	172969771	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	RPL27	17	42998273	43002959	FALSE	1040	-0.646197503395479	26	42761348	43039396	NA	2	NA	NA	2	NA	278048	NA	18	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RPL27A	11	8682411	8714759	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	19	2	FALSE	DIPLOID	PASS
659_bTo_pair	RPL28	19	55385345	55403250	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	8	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RPL29	3	51993522	51995942	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	RPL3	22	39312882	39320389	FALSE	1267	-0.448885551917151	34	39313004	41087696	NA	2	NA	NA	2	NA	1774692	NA	24	10	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RPL30	8	98024851	98046469	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	11	1	FALSE	GAIN	PASS
659_bTo_pair	RPL31	2	101001715	101024032	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	13	3	FALSE	DIPLOID	PASS
659_bTo_pair	RPL32	3	12834485	12841588	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	RPL34	4	108620566	108630412	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	RPL35	9	124857880	124861981	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	RPL35A	3	197949980	197956610	FALSE	271	-0.194588974812627	47	196198492	198169864	0.365165917639896	3	1	0.365165917639896	3	1	1971372	2	29	4	0	FALSE	GAIN	PASS
659_bTo_pair	RPL36	19	5674947	5691876	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	RPL36A	23	101390824	101396154	FALSE	1320	1.97260294899883	102	101348659	101391051	0.364342740527346	26	NA	0.364342740527346	26	NA	42392	NA	4	6	0	TRUE	AMP	PASS
659_bTo_pair	RPL36A-HNRNPH2	23	101391011	101412297	FALSE	1320	1.97260294899883	102	101348659	101391051	0.364342740527346	26	NA	0.364342740527346	26	NA	42392	NA	4	14	2	TRUE	AMP	PASS
659_bTo_pair	RPL36AL	14	49618519	49620685	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	RPL37	5	40825262	40835335	FALSE	316	-0.143574193475256	49	39021030	43704252	0.365165917639896	3	1	0.365165917639896	3	1	4683222	2	28	4	0	FALSE	GAIN	PASS
659_bTo_pair	RPL37A	2	216498189	216579180	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	RPL38	17	74203582	74210655	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	RPL39	23	119786504	119791643	FALSE	1328	0.070674287613007	59	119603543	121049335	0.308533751035793	5	NA	0.308533751035793	5	NA	1445792	NA	34	3	0	FALSE	AMP (many states)	PASS
659_bTo_pair	RPL39L	3	187120948	187180908	FALSE	265	-0.393829618143586	39	186790414	187702028	NA	2	NA	NA	2	NA	911614	NA	9	1	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RPL3L	16	1943974	1957606	FALSE	937	-1.70810798820954	2	1834331	1946734	0.364342740527346	0	0	0.364342740527346	0	0	112403	0	5	11	0	TRUE	HOMDEL	PASS
659_bTo_pair	RPL4	15	66498015	66524532	FALSE	910	-0.956752978196304	11	66494510	66716498	0.289956079954009	0	0	0.289956079954009	0	0	221988	0	5	18	0	FALSE	HOMDEL	PASS
659_bTo_pair	RPL41	12	56116586	56117943	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RPL5	1	92831983	92841924	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	RPL6	12	112405190	112418838	FALSE	802	-0.463173510714366	34	111455064	112408626	NA	2	NA	NA	2	NA	953562	NA	12	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RPL7	8	73290267	73295789	FALSE	553	-0.248188717260806	46	68331252	73878866	0.298322295679939	3	NA	0.298322295679939	3	NA	5547614	NA	20	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RPL7A	9	133348214	133351426	FALSE	627	-0.867007674319489	12	132986776	134157867	0.365165917639896	1	0	0.365165917639896	1	0	1171091	1	28	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	RPL7L1	6	42879618	42889925	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	RPL8	8	144789765	144792587	FALSE	569	-0.29739638799535	43	144518163	145054121	0.192136715055622	3	NA	0.192136715055622	3	NA	535958	NA	13	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RPL9	4	39452521	39458949	FALSE	280	-0.191477557443324	47	38829296	41740154	0.365165917639896	3	1	0.365165917639896	3	1	2910858	2	22	6	1	FALSE	GAIN	PASS
659_bTo_pair	RPLP0	12	120196686	120201235	FALSE	810	-0.438737881374958	34	120127967	120903912	NA	2	NA	NA	2	NA	775945	NA	20	7	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RPLP1	15	69452784	69456194	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	RPLP2	11	809647	812880	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RPN1	3	128619970	128681075	FALSE	240	-0.311262736248051	40	128620554	130098189	0.308149309490068	3	1	0.308149309490068	3	1	1477635	2	22	13	0	FALSE	GAIN	PASS
659_bTo_pair	RPN2	20	37178410	37241623	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	19	3	FALSE	DIPLOID	PASS
659_bTo_pair	RPP14	3	58306247	58324695	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	RPP21	6	30345131	30346884	FALSE	377	-0.687880370218139	22	29953381	30346790	0.291335969972972	1	0	0.291335969972972	1	0	393409	1	11	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	RPP25	15	74954416	74957464	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	RPP25L	9	34610486	34612104	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	3	0	FALSE	CNLOH	PASS
659_bTo_pair	RPP30	10	90871716	90908553	FALSE	662	-0.410954559094016	36	89715119	94762760	0.365165917639896	2	0	0.365165917639896	2	0	5047641	2	33	12	0	FALSE	CNLOH	PASS
659_bTo_pair	RPP38	10	15097180	15139818	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	15	0	FALSE	CNLOH	PASS
659_bTo_pair	RPP40	6	4994732	5004063	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	RPRD1A	18	35984387	36067576	FALSE	1095	-0.699288883997088	20	33734323	36718652	0.365165917639896	1	0	0.365165917639896	1	0	2984329	1	17	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	RPRD1B	20	38033546	38127780	FALSE	1205	-0.619744376635615	23	37518926	41023791	0.186356639256811	1	0	0.186356639256811	1	0	3504865	1	19	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	RPRD2	1	150363091	150476566	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	23	0	FALSE	DIPLOID	PASS
659_bTo_pair	RPRM	2	153477338	153478808	FALSE	149	-0.454179855872301	30	147845197	157628657	1	2	1	1	2	1	9783460	1	30	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	RPRML	17	46978156	46979248	FALSE	1046	-0.746772159255206	19	45395806	47696360	0.365165917639896	1	0	0.365165917639896	1	0	2300554	1	26	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	RPS10	6	34417454	34426125	FALSE	391	-0.499783837646083	34	33391964	35241176	NA	2	NA	NA	2	NA	1849212	NA	26	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RPS10-NUDT3	6	34284887	34426071	FALSE	391	-0.499783837646083	34	33391964	35241176	NA	2	NA	NA	2	NA	1849212	NA	26	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RPS11	19	49496365	49499689	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	RPS12	6	132814441	132817564	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	RPS13	11	17074389	17077787	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	RPS14	5	150442635	150449756	FALSE	350	-0.819899512516675	16	150444373	153997804	0.365165917639896	1	0	0.365165917639896	1	0	3553431	1	25	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	RPS15	19	1438358	1440494	FALSE	1116	-0.668595541323287	22	1229189	1605424	0.291335969972972	1	0	0.291335969972972	1	0	376235	1	21	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	RPS15A	16	18781295	18790383	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	RPS16	19	39433207	39435948	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	5	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RPS17	15	82536750	82540564	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	2	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RPS18	6	33272010	33276510	FALSE	389	-0.565050845620731	23	33163789	33316917	0.186356639256811	1	0	0.186356639256811	1	0	153128	1	13	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	RPS19	19	41859918	41872926	FALSE	1177	-0.671885212726332	22	41354916	42250573	0.291335969972972	1	0	0.291335969972972	1	0	895657	1	32	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	RPS19BP1	22	39529093	39532855	FALSE	1267	-0.448885551917151	34	39313004	41087696	NA	2	NA	NA	2	NA	1774692	NA	24	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RPS2	16	1962052	1964860	FALSE	938	-0.541386594301884	29	1947002	2038739	NA	2	NA	NA	2	NA	91737	NA	11	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RPS20	8	56067295	56074581	FALSE	547	0.0601932906587055	59	56069824	56168120	0.308533751035793	5	NA	0.308533751035793	5	NA	98296	NA	3	5	3	FALSE	AMP (many states)	PASS
659_bTo_pair	RPS21	20	62387116	62388520	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	RPS23	5	82273358	82278577	FALSE	327	-0.729214269739125	19	80961009	86619409	0.365165917639896	1	0	0.365165917639896	1	0	5658400	1	14	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	RPS24	10	78033732	78056813	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	10	0	FALSE	CNLOH	PASS
659_bTo_pair	RPS25	11	119015712	119018691	FALSE	728	-0.487905654975058	30	118527582	119195409	1	2	1	1	2	1	667827	1	26	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	RPS26	12	56041351	56044697	FALSE	776	-0.798270269619795	16	55987117	56074534	0.365165917639896	1	0	0.365165917639896	1	0	87417	1	4	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	RPS27	1	153990755	153992155	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	RPS27A	2	55231903	55235853	FALSE	111	-0.244883980498374	46	54612139	55346218	0.298322295679939	3	NA	0.298322295679939	3	NA	734079	NA	7	5	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	RPS27L	15	63125872	63158021	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	RPS28	19	8321158	8323340	FALSE	1132	-0.583194501817822	26	7916513	8843246	NA	2	NA	NA	2	NA	926733	NA	25	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RPS29	14	49570984	49599164	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	RPS3	11	75399486	75422280	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	6	0	FALSE	GAIN	PASS
659_bTo_pair	RPS3A	4	151099573	151104652	FALSE	300	-0.423460920061428	34	143186078	151174790	NA	2	NA	NA	2	NA	7988712	NA	32	6	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RPS4X	23	72255679	72277300	FALSE	1317	0.217996879888221	62	71533297	76176924	0.364342740527346	5	NA	0.364342740527346	5	NA	4643627	NA	35	8	1	FALSE	AMP (many states)	PASS
659_bTo_pair	RPS5	19	58386400	58394806	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	5	1	FALSE	GAIN	PASS
659_bTo_pair	RPS6	9	19375715	19380254	FALSE	581	-0.746183084602222	19	10618009	19786745	0.365165917639896	1	0	0.365165917639896	1	0	9168736	1	24	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	RPS6KA1	1	26529761	26575030	FALSE	11	-0.0648968270692269	55	26460136	26787177	0.328696605851359	4	NA	0.328696605851359	4	NA	327041	NA	4	24	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	RPS6KA2	6	166409364	166906451	FALSE	447	-0.721809212356928	19	165280135	167033904	0.365165917639896	1	0	0.365165917639896	1	0	1753769	1	11	24	2	FALSE	HETLOSS	PASS
659_bTo_pair	RPS6KA3	23	20149911	20267519	FALSE	1278	-0.021616497728569	55	20155391	23935235	0.328696605851359	4	NA	0.328696605851359	4	NA	3779844	NA	16	22	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RPS6KA4	11	64359148	64372215	FALSE	703	1.76300320161995	98	64359269	64556030	0.364342740527346	22	NA	0.364342740527346	22	NA	196761	NA	2	22	0	FALSE	AMP	PASS
659_bTo_pair	RPS6KA5	14	90847862	91060636	FALSE	870	-0.471399657488227	30	81180359	92000019	1	2	1	1	2	1	10819660	1	29	19	1	FALSE	DIPLOID	PASS
659_bTo_pair	RPS6KA6	23	84058346	84187907	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	23	2	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	RPS6KB1	17	59893046	59950564	FALSE	1059	1.9344109429888	101	59893143	59950512	0.364342740527346	25	NA	0.364342740527346	25	NA	57369	NA	2	31	1	FALSE	AMP	PASS
659_bTo_pair	RPS6KB2	11	67428460	67435408	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	14	2	FALSE	GAIN	PASS
659_bTo_pair	RPS6KC1	1	213051233	213274773	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	RPS6KL1	14	74903954	74923396	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	13	2	FALSE	DIPLOID	PASS
659_bTo_pair	RPS7	2	3575205	3580920	FALSE	89	-0.524158836377085	27	41620	3847167	1	2	1	1	2	1	3805547	1	18	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	RPS8	1	44775251	44778779	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	RPS9	19	54200742	54249003	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	29	11	FALSE	DIPLOID	PASS
659_bTo_pair	RPSA	3	39406689	39412542	FALSE	212	-0.750996176556328	19	38165958	40533064	0.365165917639896	1	0	0.365165917639896	1	0	2367106	1	26	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	RPTN	1	152153595	152159228	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	RPTOR	17	80544819	80966371	FALSE	1083	0.865301347480642	76	80545040	80966382	0.364342740527346	10	NA	0.364342740527346	10	NA	421342	NA	1	47	4	FALSE	AMP	PASS
659_bTo_pair	RPUSD1	16	784974	788397	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RPUSD2	15	40569300	40574943	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	RPUSD3	3	9837849	9844602	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	RPUSD4	11	126202094	126211692	FALSE	732	-0.497254377564454	34	125672754	127000522	NA	2	NA	NA	2	NA	1327768	NA	19	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RRAD	16	66921679	66925644	FALSE	974	-0.455513775034755	34	66912726	67009122	NA	2	NA	NA	2	NA	96396	NA	6	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RRAGA	9	19049395	19050983	FALSE	581	-0.746183084602222	19	10618009	19786745	0.365165917639896	1	0	0.365165917639896	1	0	9168736	1	24	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	RRAGB	23	55717739	55758774	FALSE	1303	0.0232492223836125	56	53426353	57488811	0.365165917639896	4	NA	0.365165917639896	4	NA	4062458	NA	32	11	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RRAGC	1	38838198	38859823	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	RRAGD	6	89364636	89412270	FALSE	409	-0.443147941484883	34	89098919	90586786	NA	2	NA	NA	2	NA	1487867	NA	13	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RRAS	19	49635292	49640201	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	RRAS2	11	14277926	14364506	FALSE	686	2.25827323229373	109	14278175	14359047	0.364342740527346	33	NA	0.364342740527346	33	NA	80872	NA	1	17	2	TRUE	AMP	PASS
659_bTo_pair	RRBP1	20	17613678	17682295	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	26	4	FALSE	DIPLOID	PASS
659_bTo_pair	RREB1	6	7107597	7251980	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	24	1	FALSE	DIPLOID	PASS
659_bTo_pair	RRH	4	109827994	109844604	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	7	2	FALSE	DIPLOID	PASS
659_bTo_pair	RRM1	11	4094707	4138876	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	19	3	FALSE	HETLOSS	PASS
659_bTo_pair	RRM2	2	10120698	10131419	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	RRM2B	8	102204502	102239118	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	10	0	FALSE	GAIN	PASS
659_bTo_pair	RRN3	16	15060022	15094317	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	17	1	FALSE	DIPLOID	PASS
659_bTo_pair	RRNAD1	1	156728442	156736960	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	RRP1	21	43789513	43805293	FALSE	1234	-0.544212636077936	27	41740855	44141314	1	2	1	1	2	1	2400459	1	31	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	RRP12	10	97356358	97426076	FALSE	664	-0.371799025630062	36	96955124	97864220	0.365165917639896	2	0	0.365165917639896	2	0	909096	2	23	34	6	FALSE	CNLOH	PASS
659_bTo_pair	RRP15	1	218285287	218337983	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	RRP1B	21	43659548	43696079	FALSE	1234	-0.544212636077936	27	41740855	44141314	1	2	1	1	2	1	2400459	1	31	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	RRP36	6	43021645	43034156	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	RRP7A	22	42509968	42519802	FALSE	1269	-0.443951758803067	34	41205309	42514754	NA	2	NA	NA	2	NA	1309445	NA	31	7	1	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	RRP8	11	6595075	6603620	FALSE	682	-0.308581000695747	43	6240079	6614875	0.192136715055622	3	NA	0.192136715055622	3	NA	374796	NA	15	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RRP9	3	51933430	51941941	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	RRS1	8	66429028	66430733	FALSE	550	-0.186881774239562	48	60208949	67746087	0.365165917639896	3	NA	0.365165917639896	3	NA	7537138	NA	33	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RS1	23	18639910	18672109	FALSE	1276	0.0763243231691416	59	15827382	20064777	0.308533751035793	5	NA	0.308533751035793	5	NA	4237395	NA	24	9	0	FALSE	AMP (many states)	PASS
659_bTo_pair	RSAD1	17	50478800	50485975	FALSE	1053	-0.561829441831031	26	49646906	50626743	NA	2	NA	NA	2	NA	979837	NA	25	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RSAD2	2	6865806	6898239	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	RSBN1	1	113761832	113812476	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	RSBN1L	7	77696443	77783022	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	RSC1A1	1	15659869	15661722	FALSE	6	-0.41295085321191	39	13779356	15847467	NA	2	NA	NA	2	NA	2068111	NA	18	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RSF1	11	77659996	77821017	FALSE	712	-0.188800010767045	48	77590086	86068715	0.365165917639896	3	NA	0.365165917639896	3	NA	8478629	NA	30	24	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	RSL1D1	16	11833850	11851585	FALSE	954	-0.618769947650953	26	11345676	11941160	NA	2	NA	NA	2	NA	595484	NA	9	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RSL24D1	15	55180806	55197067	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	RSPH1	21	42472486	42496354	FALSE	1234	-0.544212636077936	27	41740855	44141314	1	2	1	1	2	1	2400459	1	31	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	RSPH10B	7	5925550	5970683	FALSE	455	0.0869447764468888	59	5592963	6026819	0.308533751035793	5	NA	0.308533751035793	5	NA	433856	NA	8	12	3	FALSE	AMP (many states)	PASS
659_bTo_pair	RSPH10B2	7	6754109	6799365	FALSE	456	-0.240618790532325	45	6028682	12688782	0.279823559258657	3	0	0.279823559258657	3	0	6660100	3	32	10	2	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	RSPH14	22	23059415	23145021	FALSE	1250	-0.793141417924499	16	22896030	23161569	0.365165917639896	1	0	0.365165917639896	1	0	265539	1	4	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	RSPH3	6	158972871	159000187	FALSE	444	-0.505238631103688	30	158776425	160753038	1	2	1	1	2	1	1976613	1	17	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	RSPH4A	6	116616479	116632985	FALSE	417	-0.520434008170675	29	114058103	117272433	NA	2	NA	NA	2	NA	3214330	NA	20	11	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RSPH6A	19	45795710	45815319	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	12	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RSPH9	6	43645046	43672599	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	RSPO1	1	37611350	37634923	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	RSPO2	8	107899316	108083648	FALSE	561	-0.210477706860293	47	102652438	116770243	0.365165917639896	3	1	0.365165917639896	3	1	14117805	2	32	7	0	FALSE	GAIN	PASS
659_bTo_pair	RSPO3	6	127118604	127197765	FALSE	422	2.12432500359668	106	127119278	127150448	0.364342740527346	29	15	0.364342740527346	29	15	31170	14	1	113	20	TRUE	AMP	PASS
659_bTo_pair	RSPO4	20	958452	1002264	FALSE	1195	-0.60512265366003	23	87765	1537211	0.186356639256811	1	0	0.186356639256811	1	0	1449446	1	33	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	RSPRY1	16	57186137	57240475	FALSE	971	-0.537344591536493	29	57069860	57923335	NA	2	NA	NA	2	NA	853475	NA	21	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RSRC1	3	158105855	158545730	FALSE	250	-0.231905273142314	46	156829339	161250770	0.298322295679939	3	NA	0.298322295679939	3	NA	4421431	NA	26	11	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RSRC2	12	122503458	122527000	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	RSRP1	1	25242237	25338213	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	RSU1	10	16590611	16817528	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	8	0	FALSE	CNLOH	PASS
659_bTo_pair	RTBDN	19	12825478	12835428	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	RTCA	1	100266207	100292769	FALSE	31	-0.34979279123772	43	94820443	100270584	0.192136715055622	3	NA	0.192136715055622	3	NA	5450141	NA	22	11	0	TRUE	GAIN (many states)	PASS
659_bTo_pair	RTCB	22	32387582	32412255	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	12	0	FALSE	CNLOH	PASS
659_bTo_pair	RTEL1	20	63657810	63696253	TRUE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	38	8	FALSE	DIPLOID	PASS
659_bTo_pair	RTEL1-TNFRSF6B	20	63659300	63698684	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	44	10	TRUE	DIPLOID	PASS
659_bTo_pair	RTF1	15	41408408	41483563	FALSE	894	-0.874433234740196	13	41183964	41662415	0.365165917639896	1	0	0.365165917639896	1	0	478451	1	12	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	RTF2	20	56468585	56519449	FALSE	1221	-0.44936578355072	34	56249153	58715213	NA	2	NA	NA	2	NA	2466060	NA	27	16	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RTKN	2	74425836	74442422	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RTKN2	10	62183035	62268707	FALSE	646	2.68650863538675	117	62091199	62198367	0.364342740527346	45	NA	0.364342740527346	45	NA	107168	NA	2	14	0	TRUE	AMP	PASS
659_bTo_pair	RTL1	14	100879753	100903722	FALSE	876	-0.546199181806584	27	96039535	102050530	1	2	1	1	2	1	6010995	1	30	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	RTL10	22	19846138	19854896	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	5	0	FALSE	CNLOH	PASS
659_bTo_pair	RTL3	23	78656069	78659328	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	6	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	RTL4	23	112454500	112457112	FALSE	1326	0.081501992784242	59	111246621	119452040	0.308533751035793	5	NA	0.308533751035793	5	NA	8205419	NA	28	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	RTL5	23	72127110	72131901	FALSE	1317	0.217996879888221	62	71533297	76176924	0.364342740527346	5	NA	0.364342740527346	5	NA	4643627	NA	35	7	0	FALSE	AMP (many states)	PASS
659_bTo_pair	RTL6	22	44492572	44498298	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	4	0	FALSE	CNLOH	PASS
659_bTo_pair	RTL8A	23	135050932	135052196	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RTL8B	23	135020504	135022529	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	2	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RTL8C	23	135032366	135033546	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	2	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RTL9	23	110358816	110456334	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	18	0	FALSE	AMP (many states)	PASS
659_bTo_pair	RTN1	14	59595976	59870966	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	RTN2	19	45485289	45497061	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	13	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	RTN3	11	63681446	63759891	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	18	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RTN4	2	54972187	55112621	FALSE	111	-0.244883980498374	46	54612139	55346218	0.298322295679939	3	NA	0.298322295679939	3	NA	734079	NA	7	21	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RTN4IP1	6	106571971	106629487	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	RTN4R	22	20241415	20283246	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	7	0	FALSE	CNLOH	PASS
659_bTo_pair	RTN4RL1	17	1934677	2025345	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	RTN4RL2	11	57460549	57477534	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	7	0	FALSE	GAIN	PASS
659_bTo_pair	RTP1	3	187197486	187201465	FALSE	265	-0.393829618143586	39	186790414	187702028	NA	2	NA	NA	2	NA	911614	NA	9	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RTP2	3	187698259	187702557	FALSE	265	-0.393829618143586	39	186790414	187702028	NA	2	NA	NA	2	NA	911614	NA	9	3	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RTP3	3	46497491	46500949	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	RTP4	3	187368332	187372076	FALSE	265	-0.393829618143586	39	186790414	187702028	NA	2	NA	NA	2	NA	911614	NA	9	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RTP5	2	241869600	241873823	FALSE	196	-0.436283153377974	34	241858748	241873250	NA	2	NA	NA	2	NA	14502	NA	2	9	6	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RTRAF	14	51989475	52010691	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	RTTN	18	70003031	70205945	FALSE	1111	-0.872352968035647	12	63331800	74584528	0.365165917639896	1	0	0.365165917639896	1	0	11252728	1	31	51	3	FALSE	HETLOSS	PASS
659_bTo_pair	RUBCN	3	197671393	197749727	FALSE	271	-0.194588974812627	47	196198492	198169864	0.365165917639896	3	1	0.365165917639896	3	1	1971372	2	29	24	0	FALSE	GAIN	PASS
659_bTo_pair	RUBCNL	13	46342000	46438190	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	RUFY1	5	179550558	179610026	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	19	3	FALSE	HETLOSS	PASS
659_bTo_pair	RUFY2	10	68341107	68407294	FALSE	649	-0.498971247588349	34	63133428	68527348	NA	2	NA	NA	2	NA	5393920	NA	15	24	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RUFY3	4	70704204	70807315	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	RUFY4	2	218034960	218090581	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	12	3	FALSE	HETLOSS	PASS
659_bTo_pair	RUNDC1	17	42980565	42993690	FALSE	1040	-0.646197503395479	26	42761348	43039396	NA	2	NA	NA	2	NA	278048	NA	18	10	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RUNDC3A	17	44308413	44318671	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	12	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RUNDC3B	7	87627548	87832296	FALSE	479	-0.448308050861149	30	87602941	92590330	1	2	1	1	2	1	4987389	1	30	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	RUNX1	21	34787801	36004667	TRUE	1227	1.78436451763269	98	34782905	35922110	0.364342740527346	22	NA	0.364342740527346	22	NA	1139205	NA	2	50	2	FALSE	AMP	PASS
659_bTo_pair	RUNX1T1	8	91954967	92103286	FALSE	558	2.04691261465897	105	91959063	92095596	0.364342740527346	28	NA	0.364342740527346	28	NA	136533	NA	1	29	0	TRUE	AMP	PASS
659_bTo_pair	RUNX2	6	45328157	45664349	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	RUNX3	1	24899511	24965121	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	RUSC1	1	155320896	155331114	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	RUSC2	9	35490127	35561898	FALSE	590	0.518634267342274	67	35107891	35683151	0.364342740527346	7	2	0.364342740527346	7	2	575260	5	11	23	1	FALSE	AMP	PASS
659_bTo_pair	RUVBL1	3	128064778	128153914	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	20	0	FALSE	GAIN	PASS
659_bTo_pair	RUVBL2	19	48993448	49015995	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	RWDD1	6	116571367	116597675	FALSE	417	-0.520434008170675	29	114058103	117272433	NA	2	NA	NA	2	NA	3214330	NA	20	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	RWDD2A	6	83193379	83198932	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	RWDD2B	21	29004384	29019378	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	RWDD3	1	95234155	95247225	FALSE	31	-0.34979279123772	43	94820443	100270584	0.192136715055622	3	NA	0.192136715055622	3	NA	5450141	NA	22	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	RWDD4	4	183639635	183659225	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	RXFP1	4	158315311	158653372	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	RXFP2	13	31739542	31803388	FALSE	828	-0.893717680890687	13	28659152	32311865	0.365165917639896	1	0	0.365165917639896	1	0	3652713	1	17	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	RXFP3	5	33936386	33938237	FALSE	312	-0.206081392785099	47	24487677	35857105	0.365165917639896	3	1	0.365165917639896	3	1	11369428	2	27	6	0	FALSE	GAIN	PASS
659_bTo_pair	RXFP4	1	155941710	155942949	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	RXRA	9	134317098	134440585	FALSE	628	1.37408336359478	87	134326595	134750608	0.364342740527346	16	NA	0.364342740527346	16	NA	424013	NA	2	34	4	FALSE	AMP	PASS
659_bTo_pair	RXRB	6	33193588	33200688	FALSE	389	-0.565050845620731	23	33163789	33316917	0.186356639256811	1	0	0.186356639256811	1	0	153128	1	13	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	RXRG	1	165400917	165445355	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	RXYLT1	12	63779803	63809558	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	RYBP	3	72371825	72446621	TRUE	231	0.956477369753309	78	72372068	72867016	0.364342740527346	11	NA	0.364342740527346	11	NA	494948	NA	2	39	2	FALSE	AMP	PASS
659_bTo_pair	RYK	3	134065303	134250744	FALSE	242	-0.32037413513609	40	130560427	134790274	0.308149309490068	3	1	0.308149309490068	3	1	4229847	2	29	15	0	FALSE	GAIN	PASS
659_bTo_pair	RYR1	19	38433699	38587564	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	124	4	FALSE	HETLOSS	PASS
659_bTo_pair	RYR2	1	237042205	237833988	FALSE	82	-0.550278310688863	27	235196044	241494870	1	2	1	1	2	1	6298826	1	22	118	4	FALSE	DIPLOID	PASS
659_bTo_pair	RYR3	15	33310945	33866121	FALSE	888	-0.723950250184678	19	32774281	34342000	0.365165917639896	1	0	0.365165917639896	1	0	1567719	1	10	116	8	FALSE	HETLOSS	PASS
659_bTo_pair	S100A1	1	153627926	153632039	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	S100A10	1	151982915	151994390	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	S100A11	1	152032506	152047907	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	S100A12	1	153373706	153375649	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	S100A13	1	153618787	153631360	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	S100A14	1	153614255	153616986	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	S100A16	1	153606886	153613145	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	S100A2	1	153561108	153567890	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	S100A3	1	153547329	153549372	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	S100A4	1	153543613	153550136	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	S100A5	1	153537147	153541765	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	S100A6	1	153534599	153536244	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	S100A7	1	153457744	153460701	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	S100A7A	1	153416524	153423225	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	S100A7L2	1	153437058	153439949	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	S100A8	1	153390032	153391188	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	S100A9	1	153357854	153361027	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	S100B	21	46598962	46605208	FALSE	1239	-0.568555801579827	23	44960223	46664365	0.186356639256811	1	0	0.186356639256811	1	0	1704142	1	18	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	S100G	23	16650158	16654670	FALSE	1276	0.0763243231691416	59	15827382	20064777	0.308533751035793	5	NA	0.308533751035793	5	NA	4237395	NA	24	2	1	FALSE	AMP (many states)	PASS
659_bTo_pair	S100P	4	6693069	6697170	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	2	0	FALSE	GAIN	PASS
659_bTo_pair	S100PBP	1	32816767	32858879	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	S100Z	5	76850001	76921650	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	S1PR1	1	101236865	101243713	FALSE	32	-0.441874489475641	34	100273343	107324874	NA	2	NA	NA	2	NA	7051531	NA	18	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	S1PR2	19	10221433	10231331	FALSE	1138	2.08126331560962	105	10194925	10231337	0.364342740527346	28	NA	0.364342740527346	28	NA	36412	NA	2	10	1	FALSE	AMP	PASS
659_bTo_pair	S1PR3	9	88990863	89005010	FALSE	604	-0.547885090101936	27	85547201	90613824	1	2	1	1	2	1	5066623	1	21	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	S1PR4	19	3172346	3180332	FALSE	1122	-0.653400653967241	21	3157829	4037863	0.140309795179477	0	0	0.140309795179477	0	0	880034	0	27	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	S1PR5	19	10512742	10517931	FALSE	1140	1.39093669578364	87	10467544	10514059	0.364342740527346	16	NA	0.364342740527346	16	NA	46515	NA	3	5	1	TRUE	AMP	PASS
659_bTo_pair	SAA1	11	18266174	18269977	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	3	2	FALSE	DIPLOID	PASS
659_bTo_pair	SAA2	11	18239223	18248643	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	SAA2-SAA4	11	18231423	18248635	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	SAA4	11	18231349	18236893	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	SAAL1	11	18069935	18106091	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	SAC3D1	11	65040901	65044828	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	5	0	FALSE	GAIN	PASS
659_bTo_pair	SACM1L	3	45689056	45745424	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	20	4	FALSE	HETLOSS	PASS
659_bTo_pair	SACS	13	23328826	23433740	FALSE	823	-0.240903716824123	46	23203852	23358404	0.298322295679939	3	NA	0.298322295679939	3	NA	154552	NA	2	59	4	TRUE	GAIN (many states)	PASS
659_bTo_pair	SAE1	19	47113274	47210636	FALSE	1187	-0.64296711085636	26	47021158	48297657	NA	2	NA	NA	2	NA	1276499	NA	31	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SAFB	19	5623035	5668478	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	SAFB2	19	5586999	5624046	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	SAG	2	233307816	233347055	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	15	2	FALSE	DIPLOID	PASS
659_bTo_pair	SAGE1	23	135889205	135913061	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	20	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SALL1	16	51135975	51151367	FALSE	967	0.500726112014677	68	50742104	51142141	0.364342740527346	7	NA	0.364342740527346	7	NA	400037	NA	2	16	0	TRUE	INDETERMINATE	PASS
659_bTo_pair	SALL2	14	21521081	21537216	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	15	1	TRUE	DIPLOID	PASS
659_bTo_pair	SALL3	18	78980275	79002677	FALSE	1113	-0.883471952658051	12	75410842	80247341	0.365165917639896	1	0	0.365165917639896	1	0	4836499	1	17	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	SALL4	20	51782331	51802520	FALSE	1218	-0.459978768286429	34	50587211	53185754	NA	2	NA	NA	2	NA	2598543	NA	12	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SAMD1	19	14087840	14091036	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SAMD10	20	63974113	63980008	FALSE	1225	-0.32421417626258	43	63733191	64273510	0.192136715055622	3	NA	0.192136715055622	3	NA	540319	NA	22	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SAMD11	1	923928	944581	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	15	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SAMD12	8	118189455	118622112	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	6	0	FALSE	GAIN	PASS
659_bTo_pair	SAMD13	1	84298366	84389957	FALSE	27	-0.365760579101575	39	77969065	85252731	NA	2	NA	NA	2	NA	7283666	NA	23	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SAMD14	17	50110040	50129882	FALSE	1053	-0.561829441831031	26	49646906	50626743	NA	2	NA	NA	2	NA	979837	NA	25	12	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SAMD15	14	77376689	77391497	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	10	4	FALSE	DIPLOID	PASS
659_bTo_pair	SAMD3	6	130144315	130365425	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	SAMD4A	14	54567097	54793315	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	SAMD4B	19	39342396	39385710	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	16	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SAMD5	6	147508927	147737547	FALSE	431	-0.504239059693729	30	143136912	149638436	1	2	1	1	2	1	6501524	1	29	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	SAMD7	3	169911572	169939175	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	9	0	FALSE	GAIN	PASS
659_bTo_pair	SAMD8	10	75099586	75182123	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	14	0	FALSE	CNLOH	PASS
659_bTo_pair	SAMD9	7	93099513	93118023	FALSE	481	0.263270810386775	63	92617224	93135669	0.364342740527346	6	NA	0.364342740527346	6	NA	518445	NA	3	19	1	FALSE	AMP (many states)	PASS
659_bTo_pair	SAMD9L	7	93130055	93148369	FALSE	481	0.263270810386775	63	92617224	93135669	0.364342740527346	6	NA	0.364342740527346	6	NA	518445	NA	3	19	2	TRUE	AMP (many states)	PASS
659_bTo_pair	SAMHD1	20	36889773	36951901	TRUE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	SAMM50	22	43955421	44010531	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	17	0	FALSE	CNLOH	PASS
659_bTo_pair	SAMSN1	21	14485228	14658821	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	17	3	FALSE	DIPLOID	PASS
659_bTo_pair	SAP130	2	127941217	128028120	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	23	0	FALSE	DIPLOID	PASS
659_bTo_pair	SAP18	13	21140514	21149084	FALSE	820	1.55574896614582	91	20973065	21146817	0.364342740527346	19	NA	0.364342740527346	19	NA	173752	NA	2	4	1	TRUE	AMP	PASS
659_bTo_pair	SAP25	7	100572228	100573820	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	SAP30	4	173369969	173377532	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	SAP30BP	17	75667116	75708062	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	SAP30L	5	154445957	154461054	FALSE	351	-0.617975601907695	26	154002251	157057925	NA	2	NA	NA	2	NA	3055674	NA	15	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SAPCD1	6	31762799	31764851	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	SAPCD2	9	137062124	137070588	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	SAR1A	10	70147289	70170523	FALSE	651	-0.523280686314431	28	68722553	70760843	0.351300687168522	2	0	0.351300687168522	2	0	2038290	2	27	6	0	FALSE	CNLOH	PASS
659_bTo_pair	SAR1B	5	134601144	134649271	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	SARAF	8	30063012	30083208	FALSE	524	-0.752404429217175	19	29337070	31032666	0.365165917639896	1	0	0.365165917639896	1	0	1695596	1	13	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	SARDH	9	133663560	133739955	FALSE	627	-0.867007674319489	12	132986776	134157867	0.365165917639896	1	0	0.365165917639896	1	0	1171091	1	28	23	4	FALSE	HETLOSS	PASS
659_bTo_pair	SARM1	17	28364356	28404049	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	27	0	FALSE	DIPLOID	PASS
659_bTo_pair	SARNP	12	55752463	55817756	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	SARS	1	109213918	109238169	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	SARS2	19	38915266	38930896	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	SART1	11	65961689	65979828	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	21	3	FALSE	GAIN	PASS
659_bTo_pair	SART3	12	108522580	108561400	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	21	4	FALSE	DIPLOID	PASS
659_bTo_pair	SASH1	6	148272304	148552050	FALSE	431	-0.504239059693729	30	143136912	149638436	1	2	1	1	2	1	6501524	1	29	32	1	FALSE	DIPLOID	PASS
659_bTo_pair	SASH3	23	129779979	129795201	FALSE	1333	-0.260466887002759	46	126819804	129920771	0.298322295679939	3	NA	0.298322295679939	3	NA	3100967	NA	9	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SASS6	1	100083563	100132955	FALSE	31	-0.34979279123772	43	94820443	100270584	0.192136715055622	3	NA	0.192136715055622	3	NA	5450141	NA	22	17	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	SAT1	23	23783173	23786226	FALSE	1278	-0.021616497728569	55	20155391	23935235	0.328696605851359	4	NA	0.328696605851359	4	NA	3779844	NA	16	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SAT2	17	7626234	7627876	FALSE	1000	-0.750226164220686	19	7324407	7655594	0.365165917639896	1	0	0.365165917639896	1	0	331187	1	31	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	SATB1	3	18345387	18445588	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	SATB2	2	199269500	199471266	FALSE	164	-0.381871160033202	39	198084145	201228955	NA	2	NA	NA	2	NA	3144810	NA	19	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SATL1	23	85092287	85243961	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	11	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	SAV1	14	50632058	50668331	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	SAXO1	9	18858906	19049358	FALSE	581	-0.746183084602222	19	10618009	19786745	0.365165917639896	1	0	0.365165917639896	1	0	9168736	1	24	15	3	FALSE	HETLOSS	PASS
659_bTo_pair	SAXO2	15	82262810	82284930	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	10	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SAYSD1	6	39104064	39115189	FALSE	397	-0.509151429367598	27	37213022	41687167	1	2	1	1	2	1	4474145	1	33	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	SBDS	7	66987677	66995601	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	SBF1	22	50445000	50475024	FALSE	1272	-0.260847831900416	46	50286270	50731222	0.298322295679939	3	NA	0.298322295679939	3	NA	444952	NA	19	40	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	SBF2	11	9778667	10294207	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	41	0	FALSE	DIPLOID	PASS
659_bTo_pair	SBK1	16	28292519	28323849	FALSE	962	-0.522336070959039	29	27403203	28925074	NA	2	NA	NA	2	NA	1521871	NA	25	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SBK2	19	55529733	55537089	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SBK3	19	55540656	55545543	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	6	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SBNO1	12	123289109	123364843	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	33	0	FALSE	DIPLOID	PASS
659_bTo_pair	SBNO2	19	1107636	1174283	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	35	2	TRUE	HOMDEL	suppress_large_homdel
659_bTo_pair	SBSN	19	35523367	35528351	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	SBSPON	8	73064540	73124088	FALSE	553	-0.248188717260806	46	68331252	73878866	0.298322295679939	3	NA	0.298322295679939	3	NA	5547614	NA	20	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SC5D	11	121292453	121308694	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	SCAF1	19	49642125	49658642	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	SCAF11	12	45919131	45992120	FALSE	766	-0.557616146966431	26	45922034	47968195	NA	2	NA	NA	2	NA	2046161	NA	13	25	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SCAF4	21	31671033	31732075	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	23	1	FALSE	DIPLOID	PASS
659_bTo_pair	SCAF8	6	154733325	154834244	FALSE	440	-0.500001062559341	30	152129628	156771069	1	2	1	1	2	1	4641441	1	14	27	0	FALSE	DIPLOID	PASS
659_bTo_pair	SCAI	9	124942608	125143506	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	SCAMP1	5	78360583	78479071	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	SCAMP2	15	74843730	74873365	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	SCAMP3	1	155255979	155262430	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	SCAMP4	19	1905214	1926013	FALSE	1118	-0.58059819545476	23	1775405	2151345	0.186356639256811	1	0	0.186356639256811	1	0	375940	1	13	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	SCAMP5	15	74957219	75021496	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	7	2	FALSE	HETLOSS	PASS
659_bTo_pair	SCAND1	20	35953617	35959472	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	SCAP	3	47413694	47477126	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	27	0	FALSE	HETLOSS	PASS
659_bTo_pair	SCAPER	15	76347904	76905444	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	35	0	FALSE	HETLOSS	PASS
659_bTo_pair	SCARA3	8	27633868	27676776	FALSE	523	-1.08188475411826	8	27469296	29263060	0.342391532111247	0	0	0.342391532111247	0	0	1793764	0	18	12	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SCARA5	8	27869882	27992727	FALSE	523	-1.08188475411826	8	27469296	29263060	0.342391532111247	0	0	0.342391532111247	0	0	1793764	0	18	10	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SCARB1	12	124776856	124882668	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	SCARB2	4	76158733	76234536	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	SCARF1	17	1633858	1645747	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	SCARF2	22	20424815	20437826	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	15	0	FALSE	CNLOH	PASS
659_bTo_pair	SCCPDH	1	246724047	246768137	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	SCD	10	100347124	100364834	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	7	1	FALSE	CNLOH	PASS
659_bTo_pair	SCD5	4	82629539	82798857	FALSE	289	-0.397475195823872	39	80335777	83458331	NA	2	NA	NA	2	NA	3122554	NA	19	8	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SCEL	13	77535674	77645263	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	32	0	FALSE	CNLOH	PASS
659_bTo_pair	SCFD1	14	30622112	30735812	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	25	2	FALSE	DIPLOID	PASS
659_bTo_pair	SCFD2	4	52872982	53366075	FALSE	283	-0.7726728361031	19	49038034	54241294	0.365165917639896	1	0	0.365165917639896	1	0	5203260	1	15	12	2	FALSE	HETLOSS	PASS
659_bTo_pair	SCG2	2	223596940	223602503	FALSE	181	-0.697161202800517	22	222304006	224401731	0.291335969972972	1	0	0.291335969972972	1	0	2097725	1	12	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	SCG3	15	51681353	51721031	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	SCG5	15	32641676	32697098	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	SCGB1A1	11	62405103	62423195	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	3	0	FALSE	GAIN	PASS
659_bTo_pair	SCGB1C1	11	193080	194573	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	2	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SCGB1D1	11	62190216	62193539	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	3	1	FALSE	GAIN	PASS
659_bTo_pair	SCGB1D2	11	62242210	62244808	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	3	1	FALSE	GAIN	PASS
659_bTo_pair	SCGB1D4	11	62296277	62299064	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	3	0	FALSE	GAIN	PASS
659_bTo_pair	SCGB2A1	11	62208668	62213939	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	3	0	FALSE	GAIN	PASS
659_bTo_pair	SCGB2A2	11	62270155	62273156	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	3	0	FALSE	GAIN	PASS
659_bTo_pair	SCGB2B2	19	34593329	34675699	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	SCGB3A1	5	180590103	180591540	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	SCGB3A2	5	147870682	147882191	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	3	1	FALSE	HETLOSS	PASS
659_bTo_pair	SCGN	6	25652201	25701783	FALSE	373	-0.695027086668472	22	24174718	26017145	0.291335969972972	1	0	0.291335969972972	1	0	1842427	1	23	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	SCHIP1	3	159839861	159897360	FALSE	250	-0.231905273142314	46	156829339	161250770	0.298322295679939	3	NA	0.298322295679939	3	NA	4421431	NA	26	7	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	SCIMP	17	5208961	5234860	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	SCIN	7	12570577	12660179	FALSE	456	-0.240618790532325	45	6028682	12688782	0.279823559258657	3	0	0.279823559258657	3	0	6660100	3	32	17	1	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	SCLT1	4	128864921	129093607	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	27	1	FALSE	DIPLOID	PASS
659_bTo_pair	SCLY	2	238060889	238099413	FALSE	190	-0.691419458816616	21	236392006	238848635	0.140309795179477	0	0	0.140309795179477	0	0	2456629	0	22	12	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SCMH1	1	41027200	41242154	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	SCML1	23	17737449	17754988	FALSE	1276	0.0763243231691416	59	15827382	20064777	0.308533751035793	5	NA	0.308533751035793	5	NA	4237395	NA	24	8	0	FALSE	AMP (many states)	PASS
659_bTo_pair	SCML2	23	18239314	18354727	FALSE	1276	0.0763243231691416	59	15827382	20064777	0.308533751035793	5	NA	0.308533751035793	5	NA	4237395	NA	24	18	0	FALSE	AMP (many states)	PASS
659_bTo_pair	SCML4	6	107704104	107824317	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	9	2	FALSE	DIPLOID	PASS
659_bTo_pair	SCN10A	3	38696807	38816217	FALSE	212	-0.750996176556328	19	38165958	40533064	0.365165917639896	1	0	0.365165917639896	1	0	2367106	1	26	37	5	FALSE	HETLOSS	PASS
659_bTo_pair	SCN11A	3	38845769	38950561	FALSE	212	-0.750996176556328	19	38165958	40533064	0.365165917639896	1	0	0.365165917639896	1	0	2367106	1	26	36	0	FALSE	HETLOSS	PASS
659_bTo_pair	SCN1A	2	165984641	166149214	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	38	1	FALSE	DIPLOID	PASS
659_bTo_pair	SCN1B	19	35030466	35040449	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	SCN2A	2	165194993	165392310	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	39	4	FALSE	DIPLOID	PASS
659_bTo_pair	SCN2B	11	118161951	118176673	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	SCN3A	2	165087522	165204067	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	38	0	FALSE	DIPLOID	PASS
659_bTo_pair	SCN3B	11	123629187	123655244	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	SCN4A	17	63938554	63972918	FALSE	1065	0.610950559170025	71	63880340	63941272	0.364342740527346	8	NA	0.364342740527346	8	NA	60932	NA	7	33	3	TRUE	INDETERMINATE	PASS
659_bTo_pair	SCN4B	11	118133377	118152888	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	SCN5A	3	38548057	38649673	FALSE	212	-0.750996176556328	19	38165958	40533064	0.365165917639896	1	0	0.365165917639896	1	0	2367106	1	26	40	0	FALSE	HETLOSS	PASS
659_bTo_pair	SCN7A	2	166403573	166494326	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	34	2	FALSE	DIPLOID	PASS
659_bTo_pair	SCN8A	12	51590266	51812864	FALSE	772	-0.61197679162419	26	50109466	51920864	NA	2	NA	NA	2	NA	1811398	NA	27	40	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SCN9A	2	166195185	166376001	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	38	5	FALSE	DIPLOID	PASS
659_bTo_pair	SCNM1	1	151156664	151170297	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	SCNN1A	12	6346843	6377730	FALSE	741	-0.251609480735115	44	4489790	6567957	0.345317016959666	3	1	0.345317016959666	3	1	2078167	2	28	17	1	FALSE	GAIN	PASS
659_bTo_pair	SCNN1B	16	23278231	23381299	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	SCNN1D	1	1280436	1292029	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	20	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SCNN1G	16	23182715	23216883	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	SCO1	17	10672474	10698375	FALSE	1006	-0.894220729735546	12	8370429	10825247	0.365165917639896	1	0	0.365165917639896	1	0	2454818	1	31	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	SCO2	22	50523568	50526439	FALSE	1272	-0.260847831900416	46	50286270	50731222	0.298322295679939	3	NA	0.298322295679939	3	NA	444952	NA	19	7	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	SCOC	4	140257286	140385726	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	SCP2	1	52927229	53051703	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	17	1	FALSE	DIPLOID	PASS
659_bTo_pair	SCP2D1	20	18813726	18814392	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	SCPEP1	17	56978105	57006768	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SCRG1	4	173384701	173406380	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	SCRIB	8	143790920	143815379	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	36	2	FALSE	DIPLOID	PASS
659_bTo_pair	SCRN1	7	29920103	29990289	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	8	0	FALSE	GAIN	PASS
659_bTo_pair	SCRN2	17	47837692	47841333	FALSE	1049	-0.703360644300681	22	47810585	48529853	0.291335969972972	1	0	0.291335969972972	1	0	719268	1	15	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	SCRN3	2	174395730	174429575	FALSE	153	-0.469039793655258	34	172736055	177217715	NA	2	NA	NA	2	NA	4481660	NA	28	10	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SCRT1	8	144330565	144336281	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	SCRT2	20	661596	676179	FALSE	1195	-0.60512265366003	23	87765	1537211	0.186356639256811	1	0	0.186356639256811	1	0	1449446	1	33	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	SCT	11	626431	627143	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	3	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SCTR	2	119439843	119525301	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	13	3	FALSE	DIPLOID	PASS
659_bTo_pair	SCUBE1	22	43197283	43343388	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	22	0	FALSE	CNLOH	PASS
659_bTo_pair	SCUBE2	11	9019498	9138114	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	24	4	FALSE	DIPLOID	PASS
659_bTo_pair	SCUBE3	6	35214419	35253079	FALSE	391	-0.499783837646083	34	33391964	35241176	NA	2	NA	NA	2	NA	1849212	NA	26	23	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	SCX	8	144266560	144268481	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	SCYL1	11	65525077	65538704	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	17	0	FALSE	GAIN	PASS
659_bTo_pair	SCYL2	12	100267140	100341724	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	SCYL3	1	169849631	169894267	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	SDAD1	4	75940950	75990962	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	23	0	FALSE	DIPLOID	PASS
659_bTo_pair	SDC1	2	20200797	20225433	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SDC2	8	96493351	96611780	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	5	0	FALSE	GAIN	PASS
659_bTo_pair	SDC3	1	30869467	30908761	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	SDC4	20	45325288	45348424	FALSE	1211	-0.249905145449482	46	45110461	45330545	0.298322295679939	3	NA	0.298322295679939	3	NA	220084	NA	9	13	2	TRUE	GAIN (many states)	PASS
659_bTo_pair	SDCBP	8	58552924	58582860	FALSE	548	-0.313898052002086	43	56168306	58659618	0.192136715055622	3	NA	0.192136715055622	3	NA	2491312	NA	10	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SDCBP2	20	1309909	1329239	FALSE	1195	-0.60512265366003	23	87765	1537211	0.186356639256811	1	0	0.186356639256811	1	0	1449446	1	33	10	3	FALSE	HETLOSS	PASS
659_bTo_pair	SDCCAG8	1	243256034	243500092	FALSE	84	-0.392646983169906	39	241532515	243426393	NA	2	NA	NA	2	NA	1893878	NA	10	21	1	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	SDE2	1	225982702	225999331	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	SDF2	17	28648356	28662189	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	SDF2L1	22	21642261	21644298	FALSE	1246	-0.481954888210425	34	21001894	21693896	NA	2	NA	NA	2	NA	692002	NA	14	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SDF4	1	1216908	1232031	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	9	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SDHA	5	218241	256700	TRUE	308	-0.255094097331532	44	92297	1246091	0.345317016959666	3	1	0.345317016959666	3	1	1153794	2	18	24	13	FALSE	GAIN	PASS
659_bTo_pair	SDHAF1	19	35995199	35996315	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	SDHAF2	11	61430042	61447529	TRUE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	13	0	FALSE	GAIN	PASS
659_bTo_pair	SDHAF3	7	97116590	97181763	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	SDHAF4	6	70566917	70589569	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	SDHB	1	17018722	17054170	TRUE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	SDHC	1	161314257	161375340	TRUE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	25	0	FALSE	DIPLOID	PASS
659_bTo_pair	SDHD	11	112086773	112120013	TRUE	725	1.72492693683901	97	112086942	112121950	0.364342740527346	21	NA	0.364342740527346	21	NA	35008	NA	2	14	0	FALSE	AMP	PASS
659_bTo_pair	SDK1	7	3301448	4269000	FALSE	452	1.72831760854182	97	2906135	3301584	0.364342740527346	21	NA	0.364342740527346	21	NA	395449	NA	2	52	2	TRUE	AMP	PASS
659_bTo_pair	SDK2	17	73334384	73644089	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	54	4	FALSE	DIPLOID	PASS
659_bTo_pair	SDR16C5	8	56300010	56320776	FALSE	548	-0.313898052002086	43	56168306	58659618	0.192136715055622	3	NA	0.192136715055622	3	NA	2491312	NA	10	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SDR39U1	14	24439766	24442905	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	7	3	FALSE	DIPLOID	PASS
659_bTo_pair	SDR42E1	16	81988855	82011488	FALSE	987	-0.578642888038652	23	81999201	85806436	0.186356639256811	1	0	0.186356639256811	1	0	3807235	1	31	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	SDR9C7	12	56923154	56934405	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	5	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SDS	12	113392445	113426301	FALSE	806	-0.481242901669781	30	113099979	114403736	1	2	1	1	2	1	1303757	1	13	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	SDSL	12	113422237	113438276	FALSE	806	-0.481242901669781	30	113099979	114403736	1	2	1	1	2	1	1303757	1	13	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	SEBOX	17	28364268	28365244	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	SEC11A	15	84669538	84716716	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SEC11C	18	59139477	59158836	FALSE	1107	-0.779150604055344	19	58918284	59696746	0.365165917639896	1	0	0.365165917639896	1	0	778462	1	7	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	SEC13	3	10293131	10321178	FALSE	199	-1.0441448018759	8	10200366	12187515	0.342391532111247	0	0	0.342391532111247	0	0	1987149	0	14	11	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SEC14L1	17	77088749	77217101	FALSE	1080	-0.537824093701074	27	76741010	78870935	1	2	1	1	2	1	2129925	1	20	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	SEC14L2	22	30396857	30425317	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	13	0	FALSE	CNLOH	PASS
659_bTo_pair	SEC14L3	22	30447959	30472049	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	13	0	FALSE	CNLOH	PASS
659_bTo_pair	SEC14L4	22	30488913	30505711	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	13	0	FALSE	CNLOH	PASS
659_bTo_pair	SEC14L5	16	4958317	5019158	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	SEC14L6	22	30522799	30546682	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	11	1	FALSE	CNLOH	PASS
659_bTo_pair	SEC16A	9	136440096	136483759	FALSE	629	-0.955558414525678	9	134750808	136485014	0.291955377254426	0	0	0.291955377254426	0	0	1734206	0	30	43	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SEC16B	1	177923956	177984303	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	28	9	FALSE	DIPLOID	PASS
659_bTo_pair	SEC22A	3	123201927	123274130	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	6	0	FALSE	GAIN	PASS
659_bTo_pair	SEC22B	1	120150898	120176515	FALSE	44	-0.0508975396039555	55	119911615	146019534	0.328696605851359	4	NA	0.328696605851359	4	NA	26107919	NA	33	1	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SEC22C	3	42547969	42601080	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	10	2	FALSE	HETLOSS	PASS
659_bTo_pair	SEC23A	14	39031919	39109646	FALSE	858	-0.388807455224718	39	37680254	45134449	NA	2	NA	NA	2	NA	7454195	NA	16	21	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SEC23B	20	18507482	18561415	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	SEC23IP	10	119892711	119944658	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	20	6	FALSE	CNLOH	PASS
659_bTo_pair	SEC24A	5	134648789	134727823	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	25	0	FALSE	HETLOSS	PASS
659_bTo_pair	SEC24B	4	109433772	109540896	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	27	0	FALSE	DIPLOID	PASS
659_bTo_pair	SEC24C	10	73744384	73772161	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	23	1	FALSE	CNLOH	PASS
659_bTo_pair	SEC24D	4	118722823	118838683	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	23	2	FALSE	DIPLOID	PASS
659_bTo_pair	SEC31A	4	82818661	82901166	FALSE	289	-0.397475195823872	39	80335777	83458331	NA	2	NA	NA	2	NA	3122554	NA	19	29	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SEC31B	10	100486642	100519864	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	28	0	FALSE	CNLOH	PASS
659_bTo_pair	SEC61A1	3	128051641	128071683	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	14	0	FALSE	GAIN	PASS
659_bTo_pair	SEC61A2	10	12129637	12169961	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	14	0	FALSE	CNLOH	PASS
659_bTo_pair	SEC61B	9	99222064	99230615	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	SEC61G	7	54752250	54759974	FALSE	467	-0.115184963745349	53	50463290	54757565	0.273255132087987	4	NA	0.273255132087987	4	NA	4294275	NA	7	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SEC62	3	169966635	169998373	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	11	0	FALSE	GAIN	PASS
659_bTo_pair	SEC63	6	107867756	107958189	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	21	2	FALSE	DIPLOID	PASS
659_bTo_pair	SECISBP2	9	89318506	89359662	FALSE	604	-0.547885090101936	27	85547201	90613824	1	2	1	1	2	1	5066623	1	21	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	SECISBP2L	15	48988476	49046563	FALSE	904	-0.666047806656427	20	44736698	49422632	0.365165917639896	1	0	0.365165917639896	1	0	4685934	1	30	22	1	FALSE	HETLOSS	PASS
659_bTo_pair	SECTM1	17	82321024	82334074	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	SEH1L	18	12947133	12987536	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	10	1	FALSE	GAIN	PASS
659_bTo_pair	SEL1L	14	81471549	81533861	FALSE	870	-0.471399657488227	30	81180359	92000019	1	2	1	1	2	1	10819660	1	29	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	SEL1L2	20	13849247	13996443	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	19	1	FALSE	DIPLOID	PASS
659_bTo_pair	SEL1L3	4	25747427	25863760	FALSE	278	-0.217595572850614	44	20704713	38137253	0.345317016959666	3	1	0.345317016959666	3	1	17432540	2	29	27	2	FALSE	GAIN	PASS
659_bTo_pair	SELE	1	169722641	169764705	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	13	2	FALSE	DIPLOID	PASS
659_bTo_pair	SELENBP1	1	151364302	151372733	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	SELENOF	1	86862445	86914424	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	SELENOH	11	57741250	57743554	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	3	1	FALSE	GAIN	PASS
659_bTo_pair	SELENOI	2	26308547	26395891	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	31	2	FALSE	DIPLOID	PASS
659_bTo_pair	SELENOK	3	53884410	53891988	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	SELENOM	22	31104772	31120069	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	5	0	FALSE	CNLOH	PASS
659_bTo_pair	SELENON	1	25800176	25818224	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	SELENOO	22	50200979	50217616	FALSE	1271	-0.350898193716427	41	45922979	50285791	0.284729887459054	3	0	0.284729887459054	3	0	4362812	3	30	12	5	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	SELENOP	5	42799880	42887392	FALSE	316	-0.143574193475256	49	39021030	43704252	0.365165917639896	3	1	0.365165917639896	3	1	4683222	2	28	6	0	FALSE	GAIN	PASS
659_bTo_pair	SELENOS	15	101270817	101277500	FALSE	933	-0.918772702357227	12	98968746	101922991	0.365165917639896	1	0	0.365165917639896	1	0	2954245	1	21	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	SELENOT	3	150602875	150630445	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	5	1	FALSE	GAIN	PASS
659_bTo_pair	SELENOV	19	39515113	39520686	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	7	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SELENOW	19	47778572	47784686	FALSE	1187	-0.64296711085636	26	47021158	48297657	NA	2	NA	NA	2	NA	1276499	NA	31	4	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SELL	1	169690667	169711698	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	SELP	1	169588849	169630193	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	18	1	FALSE	DIPLOID	PASS
659_bTo_pair	SELPLG	12	108622277	108633959	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	SEM1	7	96481626	96709891	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	SEMA3A	7	83955777	84492724	FALSE	475	-0.558789392330973	26	81950430	85121864	NA	2	NA	NA	2	NA	3171434	NA	5	19	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SEMA3B	3	50267558	50277546	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	18	2	FALSE	HETLOSS	PASS
659_bTo_pair	SEMA3C	7	80742538	80922359	FALSE	473	-0.307246163881374	43	80661065	80922245	0.192136715055622	3	NA	0.192136715055622	3	NA	261180	NA	2	20	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	SEMA3D	7	84995553	85186855	FALSE	475	-0.558789392330973	26	81950430	85121864	NA	2	NA	NA	2	NA	3171434	NA	5	19	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SEMA3E	7	83363238	83649113	FALSE	475	-0.558789392330973	26	81950430	85121864	NA	2	NA	NA	2	NA	3171434	NA	5	19	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SEMA3F	3	50155045	50189075	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	19	2	FALSE	HETLOSS	PASS
659_bTo_pair	SEMA3G	3	52433053	52445085	FALSE	224	-0.84777820586227	13	52412877	52540527	0.365165917639896	1	0	0.365165917639896	1	0	127650	1	7	18	1	FALSE	HETLOSS	PASS
659_bTo_pair	SEMA4A	1	156147366	156177752	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	SEMA4B	15	90160604	90229679	FALSE	927	-0.86531749998723	13	90191956	90642068	0.365165917639896	1	0	0.365165917639896	1	0	450112	1	11	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	SEMA4C	2	96859716	96870757	FALSE	128	-0.534748403488722	29	96267335	97158701	NA	2	NA	NA	2	NA	891366	NA	17	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SEMA4D	9	89360787	89498130	FALSE	604	-0.547885090101936	27	85547201	90613824	1	2	1	1	2	1	5066623	1	21	22	1	FALSE	DIPLOID	PASS
659_bTo_pair	SEMA4F	2	74654228	74683853	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	16	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SEMA4G	10	100969518	100985871	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	21	2	FALSE	CNLOH	PASS
659_bTo_pair	SEMA5A	5	9035026	9546075	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	25	3	FALSE	GAIN	PASS
659_bTo_pair	SEMA5B	3	122909082	123028605	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	28	4	FALSE	GAIN	PASS
659_bTo_pair	SEMA6A	5	116443616	116574934	FALSE	331	-0.706980197323045	20	112861366	122075379	0.365165917639896	1	0	0.365165917639896	1	0	9214013	1	31	23	4	FALSE	HETLOSS	PASS
659_bTo_pair	SEMA6B	19	4542593	4559808	FALSE	1124	-0.62008955817668	23	4168484	5151543	0.186356639256811	1	0	0.186356639256811	1	0	983059	1	28	19	1	FALSE	HETLOSS	PASS
659_bTo_pair	SEMA6C	1	151131685	151146664	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	22	1	FALSE	DIPLOID	PASS
659_bTo_pair	SEMA6D	15	47184101	47774223	FALSE	904	-0.666047806656427	20	44736698	49422632	0.365165917639896	1	0	0.365165917639896	1	0	4685934	1	30	24	1	FALSE	HETLOSS	PASS
659_bTo_pair	SEMA7A	15	74409289	74433958	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	16	2	FALSE	HETLOSS	PASS
659_bTo_pair	SEMG1	20	45206997	45209772	FALSE	1211	-0.249905145449482	46	45110461	45330545	0.298322295679939	3	NA	0.298322295679939	3	NA	220084	NA	9	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SEMG2	20	45221300	45224458	FALSE	1211	-0.249905145449482	46	45110461	45330545	0.298322295679939	3	NA	0.298322295679939	3	NA	220084	NA	9	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SENP1	12	48042898	48106308	FALSE	768	-0.491963868457131	34	48045387	49018767	NA	2	NA	NA	2	NA	973380	NA	28	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SENP2	3	185582496	185633551	FALSE	261	-0.625921534938974	26	185491707	185937908	NA	2	NA	NA	2	NA	446201	NA	5	17	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SENP3	17	7561875	7571969	FALSE	1000	-0.750226164220686	19	7324407	7655594	0.365165917639896	1	0	0.365165917639896	1	0	331187	1	31	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	SENP3-EIF4A1	17	7563287	7578715	FALSE	1000	-0.750226164220686	19	7324407	7655594	0.365165917639896	1	0	0.365165917639896	1	0	331187	1	31	22	1	FALSE	HETLOSS	PASS
659_bTo_pair	SENP5	3	196867856	196934714	FALSE	271	-0.194588974812627	47	196198492	198169864	0.365165917639896	3	1	0.365165917639896	3	1	1971372	2	29	15	0	FALSE	GAIN	PASS
659_bTo_pair	SENP6	6	75601509	75718278	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	27	1	FALSE	DIPLOID	PASS
659_bTo_pair	SENP7	3	101324205	101513241	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	26	0	FALSE	GAIN	PASS
659_bTo_pair	SENP8	15	72114258	72143688	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	SEPHS1	10	13317424	13348298	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	9	1	FALSE	CNLOH	PASS
659_bTo_pair	SEPHS2	16	30443631	30446181	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	SEPSECS	4	25120014	25160442	FALSE	278	-0.217595572850614	44	20704713	38137253	0.345317016959666	3	1	0.345317016959666	3	1	17432540	2	29	12	0	FALSE	GAIN	PASS
659_bTo_pair	SEPT1	16	30378133	30395991	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	SEPT10	2	109542982	109614206	FALSE	134	-0.415117895462051	39	108786846	111117811	NA	2	NA	NA	2	NA	2330965	NA	16	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SEPT11	4	76949703	77040384	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	SEPT12	16	4777669	4788521	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	SEPT14	7	55793544	55862789	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	SEPT2	2	241315100	241354027	FALSE	194	-0.588828356865968	23	240025214	241817025	0.186356639256811	1	0	0.186356639256811	1	0	1791811	1	34	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	SEPT3	22	41969475	41998221	FALSE	1269	-0.443951758803067	34	41205309	42514754	NA	2	NA	NA	2	NA	1309445	NA	31	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SEPT4	17	58520250	58540818	FALSE	1058	-0.423419268198233	34	58422367	59890994	NA	2	NA	NA	2	NA	1468627	NA	20	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SEPT5	22	19714464	19724224	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	15	0	FALSE	CNLOH	PASS
659_bTo_pair	SEPT5-GP1BB	22	19717220	19724772	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	15	0	FALSE	CNLOH	PASS
659_bTo_pair	SEPT6	23	119615724	119693370	FALSE	1328	0.070674287613007	59	119603543	121049335	0.308533751035793	5	NA	0.308533751035793	5	NA	1445792	NA	34	12	0	FALSE	AMP (many states)	PASS
659_bTo_pair	SEPT7	7	35800932	35907105	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	15	1	FALSE	GAIN	PASS
659_bTo_pair	SEPT8	5	132750817	132807241	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	SEPT9	17	77280569	77500596	FALSE	1080	-0.537824093701074	27	76741010	78870935	1	2	1	1	2	1	2129925	1	20	19	1	FALSE	DIPLOID	PASS
659_bTo_pair	SERAC1	6	158109515	158168280	FALSE	442	-0.485239870020868	34	157293045	158767513	NA	2	NA	NA	2	NA	1474468	NA	11	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SERBP1	1	67407810	67430415	FALSE	23	-0.326404897444941	43	65224778	71080923	0.192136715055622	3	NA	0.192136715055622	3	NA	5856145	NA	29	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SERF1B	5	70025247	70043113	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	1	0	FALSE	HETLOSS	PASS
659_bTo_pair	SERF2	15	43777087	43802589	FALSE	902	-0.672637691845835	22	43521582	44676538	0.291335969972972	1	0	0.291335969972972	1	0	1154956	1	21	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	SERGEF	11	17788048	18013162	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	SERHL2	22	42553617	42574382	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	9	0	FALSE	CNLOH	PASS
659_bTo_pair	SERINC1	6	122443354	122471822	FALSE	421	-0.534093125771784	29	117482879	126348569	NA	2	NA	NA	2	NA	8865690	NA	29	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SERINC2	1	31409565	31434680	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	14	6	FALSE	DIPLOID	PASS
659_bTo_pair	SERINC3	20	44496221	44522109	FALSE	1210	-0.476296426145969	34	43513997	45110019	NA	2	NA	NA	2	NA	1596022	NA	26	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SERINC4	15	43794162	43800221	FALSE	902	-0.672637691845835	22	43521582	44676538	0.291335969972972	1	0	0.291335969972972	1	0	1154956	1	21	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	SERINC5	5	80111651	80256079	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	SERP1	3	150541994	150603228	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	19	2	FALSE	GAIN	PASS
659_bTo_pair	SERP2	13	44373665	44397714	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	SERPINA1	14	94376747	94390693	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	SERPINA10	14	94280455	94293271	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	SERPINA11	14	94442464	94452790	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	SERPINA12	14	94487274	94517844	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	SERPINA3	14	94612377	94624055	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	SERPINA4	14	94561091	94569913	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	9	2	FALSE	DIPLOID	PASS
659_bTo_pair	SERPINA5	14	94561442	94593120	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	16	5	FALSE	DIPLOID	PASS
659_bTo_pair	SERPINA6	14	94304248	94323394	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	SERPINA7	23	106032442	106038738	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	7	0	FALSE	AMP (many states)	PASS
659_bTo_pair	SERPINA9	14	94462717	94479689	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	8	3	FALSE	DIPLOID	PASS
659_bTo_pair	SERPINB1	6	2832332	2842006	FALSE	366	-0.56930463675583	26	486737	3019480	NA	2	NA	NA	2	NA	2532743	NA	12	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SERPINB10	18	63897174	63936111	FALSE	1111	-0.872352968035647	12	63331800	74584528	0.365165917639896	1	0	0.365165917639896	1	0	11252728	1	31	13	3	FALSE	HETLOSS	PASS
659_bTo_pair	SERPINB11	18	63647579	63726432	FALSE	1111	-0.872352968035647	12	63331800	74584528	0.365165917639896	1	0	0.365165917639896	1	0	11252728	1	31	16	5	FALSE	HETLOSS	PASS
659_bTo_pair	SERPINB12	18	63556160	63567011	FALSE	1111	-0.872352968035647	12	63331800	74584528	0.365165917639896	1	0	0.365165917639896	1	0	11252728	1	31	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	SERPINB13	18	63586989	63604639	FALSE	1111	-0.872352968035647	12	63331800	74584528	0.365165917639896	1	0	0.365165917639896	1	0	11252728	1	31	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	SERPINB2	18	63871692	63903890	FALSE	1111	-0.872352968035647	12	63331800	74584528	0.365165917639896	1	0	0.365165917639896	1	0	11252728	1	31	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	SERPINB3	18	63655197	63661963	FALSE	1111	-0.872352968035647	12	63331800	74584528	0.365165917639896	1	0	0.365165917639896	1	0	11252728	1	31	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	SERPINB4	18	63637259	63644298	FALSE	1111	-0.872352968035647	12	63331800	74584528	0.365165917639896	1	0	0.365165917639896	1	0	11252728	1	31	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	SERPINB5	18	63476761	63505085	FALSE	1111	-0.872352968035647	12	63331800	74584528	0.365165917639896	1	0	0.365165917639896	1	0	11252728	1	31	7	5	FALSE	HETLOSS	PASS
659_bTo_pair	SERPINB6	6	2948159	2972165	FALSE	366	-0.56930463675583	26	486737	3019480	NA	2	NA	NA	2	NA	2532743	NA	12	10	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SERPINB7	18	63752935	63805376	FALSE	1111	-0.872352968035647	12	63331800	74584528	0.365165917639896	1	0	0.365165917639896	1	0	11252728	1	31	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	SERPINB8	18	63969925	64019779	FALSE	1111	-0.872352968035647	12	63331800	74584528	0.365165917639896	1	0	0.365165917639896	1	0	11252728	1	31	9	2	FALSE	HETLOSS	PASS
659_bTo_pair	SERPINB9	6	2887266	2903280	FALSE	366	-0.56930463675583	26	486737	3019480	NA	2	NA	NA	2	NA	2532743	NA	12	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SERPINC1	1	173903804	173917378	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	SERPIND1	22	20773879	20787720	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	8	0	FALSE	CNLOH	PASS
659_bTo_pair	SERPINE1	7	101127089	101139266	FALSE	484	-0.570670723449775	26	101042591	102111653	NA	2	NA	NA	2	NA	1069062	NA	15	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SERPINE2	2	223975112	224039319	FALSE	181	-0.697161202800517	22	222304006	224401731	0.291335969972972	1	0	0.291335969972972	1	0	2097725	1	12	12	2	FALSE	HETLOSS	PASS
659_bTo_pair	SERPINE3	13	51335773	51364735	FALSE	836	-0.444239733377228	32	50956423	72747004	0.365165917639896	2	0	0.365165917639896	2	0	21790581	2	40	9	0	FALSE	CNLOH	PASS
659_bTo_pair	SERPINF1	17	1761959	1777574	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	SERPINF2	17	1742836	1755268	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	SERPING1	11	57597387	57614853	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	9	0	FALSE	GAIN	PASS
659_bTo_pair	SERPINH1	11	75562056	75572783	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	7	2	FALSE	GAIN	PASS
659_bTo_pair	SERPINI1	3	167735243	167825568	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	9	2	FALSE	GAIN	PASS
659_bTo_pair	SERPINI2	3	167441789	167479004	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	12	0	FALSE	GAIN	PASS
659_bTo_pair	SERTAD1	19	40421592	40426025	FALSE	1173	-0.760690164248215	19	40322104	40807873	0.365165917639896	1	0	0.365165917639896	1	0	485769	1	21	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	SERTAD2	2	64631621	64751005	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	SERTAD3	19	40440844	40444705	FALSE	1173	-0.760690164248215	19	40322104	40807873	0.365165917639896	1	0	0.365165917639896	1	0	485769	1	21	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	SERTAD4	1	210232799	210246631	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	SERTM1	13	36673912	36697839	FALSE	830	-0.745621963362667	19	32401848	39788354	0.365165917639896	1	0	0.365165917639896	1	0	7386506	1	30	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	SERTM2	23	111511662	111522399	FALSE	1326	0.081501992784242	59	111246621	119452040	0.308533751035793	5	NA	0.308533751035793	5	NA	8205419	NA	28	1	0	FALSE	AMP (many states)	PASS
659_bTo_pair	SESN1	6	108986437	109094819	TRUE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	SESN2	1	28259527	28282491	TRUE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	SESN3	11	95165513	95232541	TRUE	717	-0.427991611956568	34	94512673	100992623	NA	2	NA	NA	2	NA	6479950	NA	19	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SESTD1	2	179101692	179264790	FALSE	155	-0.524315670340053	27	177420364	181062892	1	2	1	1	2	1	3642528	1	16	17	1	FALSE	DIPLOID	PASS
659_bTo_pair	SET	9	128683424	128696400	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	11	2	FALSE	HETLOSS	PASS
659_bTo_pair	SETBP1	18	44680173	45068510	FALSE	1099	1.95449317806151	102	44680323	45068541	0.364342740527346	26	NA	0.364342740527346	26	NA	388218	NA	1	49	0	FALSE	AMP	PASS
659_bTo_pair	SETD1A	16	30957294	30984664	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	28	0	FALSE	DIPLOID	PASS
659_bTo_pair	SETD1B	12	121804180	121832584	FALSE	813	1.84084887353134	100	121804799	121847106	0.364342740527346	23	NA	0.364342740527346	23	NA	42307	NA	2	30	3	FALSE	AMP	PASS
659_bTo_pair	SETD2	3	47016429	47163967	TRUE	215	0.809854160971137	75	47011475	47124503	0.364342740527346	10	NA	0.364342740527346	10	NA	113028	NA	1	55	0	TRUE	AMP	PASS
659_bTo_pair	SETD3	14	99397746	99480889	FALSE	876	-0.546199181806584	27	96039535	102050530	1	2	1	1	2	1	6010995	1	30	15	2	FALSE	DIPLOID	PASS
659_bTo_pair	SETD4	21	36034541	36079389	FALSE	1228	-0.430637379115077	30	36009679	38367602	1	2	1	1	2	1	2357923	1	17	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	SETD5	3	9397615	9479240	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	31	0	FALSE	HETLOSS	PASS
659_bTo_pair	SETD6	16	58515479	58521181	FALSE	972	-0.499158643645776	34	57931773	64947842	NA	2	NA	NA	2	NA	7016069	NA	18	11	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SETD7	4	139495941	139606699	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	SETD9	5	56909260	56925532	FALSE	321	-0.708699637138103	22	56909652	57262746	0.291335969972972	1	0	0.291335969972972	1	0	353094	1	3	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	SETDB1	1	150926263	150964744	TRUE	48	0.944067476880734	78	150926494	150964670	0.364342740527346	11	NA	0.364342740527346	11	NA	38176	NA	2	34	0	FALSE	AMP	PASS
659_bTo_pair	SETDB2	13	49444374	49495003	TRUE	835	-0.766581964775609	19	48490223	50953919	0.365165917639896	1	0	0.365165917639896	1	0	2463696	1	18	18	2	FALSE	HETLOSS	PASS
659_bTo_pair	SETMAR	3	4303304	4317567	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	6	2	FALSE	HETLOSS	PASS
659_bTo_pair	SETSIP	1	92074533	92075441	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	SETX	9	132261356	132354985	FALSE	625	-0.794391185935477	14	131261330	132889947	0.365165917639896	1	0	0.365165917639896	1	0	1628617	1	17	43	7	FALSE	HETLOSS	PASS
659_bTo_pair	SEZ6	17	28954901	29006440	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	21	1	FALSE	DIPLOID	PASS
659_bTo_pair	SEZ6L	22	26169474	26383597	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	20	0	FALSE	CNLOH	PASS
659_bTo_pair	SEZ6L2	16	29871159	29899547	FALSE	965	-0.735005669796309	19	28989573	29982749	0.365165917639896	1	0	0.365165917639896	1	0	993176	1	25	23	2	FALSE	HETLOSS	PASS
659_bTo_pair	SF1	11	64764606	64778786	FALSE	704	-0.387292846909492	39	64556376	64803187	NA	2	NA	NA	2	NA	246811	NA	7	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SF3A1	22	30331988	30356947	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	17	0	FALSE	CNLOH	PASS
659_bTo_pair	SF3A2	19	2236504	2248679	FALSE	1120	-0.63588318052236	23	2233887	3062886	0.186356639256811	1	0	0.186356639256811	1	0	828999	1	28	10	2	FALSE	HETLOSS	PASS
659_bTo_pair	SF3A3	1	37956975	37990921	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	SF3B1	2	197389784	197435091	FALSE	162	1.47125924740168	90	197383583	197436153	0.364342740527346	17	NA	0.364342740527346	17	NA	52570	NA	1	46	0	FALSE	AMP	PASS
659_bTo_pair	SF3B2	11	66050729	66069308	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	22	0	FALSE	GAIN	PASS
659_bTo_pair	SF3B3	16	70523788	70577670	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	26	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SF3B4	1	149923317	149928344	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	SF3B5	6	144094881	144095573	FALSE	431	-0.504239059693729	30	143136912	149638436	1	2	1	1	2	1	6501524	1	29	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	SF3B6	2	24067584	24076443	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SFI1	22	31488688	31618586	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	33	0	FALSE	CNLOH	PASS
659_bTo_pair	SFMBT1	3	52903572	53046750	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	SFMBT2	10	7158624	7411486	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	23	0	FALSE	CNLOH	PASS
659_bTo_pair	SFN	1	26863138	26864457	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	SFPQ	1	35176378	35193148	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	SFR1	10	104122058	104126385	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	5	1	FALSE	CNLOH	PASS
659_bTo_pair	SFRP1	8	41261958	41309497	FALSE	536	-0.812766686991614	14	38512585	41896345	0.365165917639896	1	0	0.365165917639896	1	0	3383760	1	19	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	SFRP2	4	153780592	153789120	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	SFRP4	7	37905932	38025695	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	12	3	FALSE	GAIN	PASS
659_bTo_pair	SFRP5	10	97766751	97771952	FALSE	664	-0.371799025630062	36	96955124	97864220	0.365165917639896	2	0	0.365165917639896	2	0	909096	2	23	6	1	FALSE	CNLOH	PASS
659_bTo_pair	SFSWAP	12	131711081	131799737	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	23	0	FALSE	DIPLOID	PASS
659_bTo_pair	SFT2D1	6	166319728	166342591	FALSE	447	-0.721809212356928	19	165280135	167033904	0.365165917639896	1	0	0.365165917639896	1	0	1753769	1	11	8	2	FALSE	HETLOSS	PASS
659_bTo_pair	SFT2D2	1	168225938	168253025	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	7	2	FALSE	DIPLOID	PASS
659_bTo_pair	SFT2D3	2	127701508	127705242	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	SFTA2	6	30931353	30955636	FALSE	379	-0.524744136561063	27	30546321	31270541	1	2	1	1	2	1	724220	1	30	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	SFTA3	14	36473288	36513829	FALSE	854	-0.32038786389426	43	35534938	36513130	0.192136715055622	3	NA	0.192136715055622	3	NA	978192	NA	5	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SFTPA1	10	79610939	79615455	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	6	4	FALSE	CNLOH	PASS
659_bTo_pair	SFTPA2	10	79555852	79560402	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	6	2	FALSE	CNLOH	PASS
659_bTo_pair	SFTPB	2	85657314	85668741	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	11	2	FALSE	DIPLOID	PASS
659_bTo_pair	SFTPC	8	22156913	22164479	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	5	2	FALSE	HETLOSS	PASS
659_bTo_pair	SFTPD	10	79937740	79982614	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	9	0	FALSE	CNLOH	PASS
659_bTo_pair	SFXN1	5	175477062	175529742	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	SFXN2	10	102714538	102743492	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	12	0	FALSE	CNLOH	PASS
659_bTo_pair	SFXN3	10	101031234	101041244	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	11	0	FALSE	CNLOH	PASS
659_bTo_pair	SFXN4	10	119140767	119165667	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	14	0	FALSE	CNLOH	PASS
659_bTo_pair	SFXN5	2	72942036	73075619	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	SGCA	17	50164214	50175931	FALSE	1053	-0.561829441831031	26	49646906	50626743	NA	2	NA	NA	2	NA	979837	NA	25	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SGCB	4	52020706	52038482	FALSE	283	-0.7726728361031	19	49038034	54241294	0.365165917639896	1	0	0.365165917639896	1	0	5203260	1	15	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	SGCD	5	155870344	156767788	FALSE	351	-0.617975601907695	26	154002251	157057925	NA	2	NA	NA	2	NA	3055674	NA	15	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SGCE	7	94524204	94656572	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	32	0	FALSE	HETLOSS	PASS
659_bTo_pair	SGCG	13	23180952	23325165	FALSE	823	-0.240903716824123	46	23203852	23358404	0.298322295679939	3	NA	0.298322295679939	3	NA	154552	NA	2	7	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	SGCZ	8	14089864	15238339	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	SGF29	16	28553915	28591790	FALSE	962	-0.522336070959039	29	27403203	28925074	NA	2	NA	NA	2	NA	1521871	NA	25	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SGIP1	1	66533383	66748299	FALSE	23	-0.326404897444941	43	65224778	71080923	0.192136715055622	3	NA	0.192136715055622	3	NA	5856145	NA	29	29	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	SGK1	6	134169246	134318112	FALSE	424	2.05014965621958	105	134052482	134317881	0.364342740527346	28	NA	0.364342740527346	28	NA	265399	NA	2	31	4	FALSE	AMP	PASS
659_bTo_pair	SGK2	20	43558968	43588237	FALSE	1210	-0.476296426145969	34	43513997	45110019	NA	2	NA	NA	2	NA	1596022	NA	26	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SGK3	8	66667596	66862022	FALSE	550	-0.186881774239562	48	60208949	67746087	0.365165917639896	3	NA	0.365165917639896	3	NA	7537138	NA	33	19	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SGK494	17	28607964	28614200	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	SGMS1	10	50305586	50625163	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	7	0	FALSE	CNLOH	PASS
659_bTo_pair	SGMS2	4	107824563	107915047	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	SGO1	3	20160593	20186292	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	SGO2	2	200510008	200583782	FALSE	164	-0.381871160033202	39	198084145	201228955	NA	2	NA	NA	2	NA	3144810	NA	19	20	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SGPL1	10	70815961	70881173	FALSE	652	-0.821968360096703	16	70771379	71285405	0.365165917639896	1	0	0.365165917639896	1	0	514026	1	4	14	1	FALSE	HETLOSS	PASS
659_bTo_pair	SGPP1	14	63684214	63728039	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	SGPP2	2	222424517	222560948	FALSE	181	-0.697161202800517	22	222304006	224401731	0.291335969972972	1	0	0.291335969972972	1	0	2097725	1	12	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	SGSH	17	80206716	80220923	FALSE	1081	-0.503130193321286	34	78873805	80288187	NA	2	NA	NA	2	NA	1414382	NA	19	13	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SGSM1	22	24806169	24927578	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	27	1	FALSE	CNLOH	PASS
659_bTo_pair	SGSM2	17	2337498	2381058	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	26	1	FALSE	HETLOSS	PASS
659_bTo_pair	SGSM3	22	40370591	40410289	FALSE	1267	-0.448885551917151	34	39313004	41087696	NA	2	NA	NA	2	NA	1774692	NA	24	22	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SGTA	19	2754714	2783371	FALSE	1120	-0.63588318052236	23	2233887	3062886	0.186356639256811	1	0	0.186356639256811	1	0	828999	1	28	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	SGTB	5	65665928	65723035	FALSE	323	-0.645106866010582	25	58495036	67196614	0.365165917639896	1	0	0.365165917639896	1	0	8701578	1	31	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	SH2B1	16	28846600	28874212	FALSE	962	-0.522336070959039	29	27403203	28925074	NA	2	NA	NA	2	NA	1521871	NA	25	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SH2B2	7	102285091	102321711	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	SH2B3	12	111405948	111451623	TRUE	801	2.09861363294872	105	111406030	111453853	0.364342740527346	29	NA	0.364342740527346	29	NA	47823	NA	2	25	2	FALSE	AMP	PASS
659_bTo_pair	SH2D1A	23	124227868	124373197	TRUE	1330	1.75700231074177	98	123733010	124378275	0.364342740527346	22	NA	0.364342740527346	22	NA	645265	NA	6	35	6	FALSE	AMP	PASS
659_bTo_pair	SH2D1B	1	162395266	162412138	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	SH2D2A	1	156806243	156816862	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	SH2D3A	19	6752160	6767588	FALSE	1128	-0.566723388755247	23	6665178	7083719	0.186356639256811	1	0	0.186356639256811	1	0	418541	1	13	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	SH2D3C	9	127738317	127778741	FALSE	619	-0.820686000870706	14	125203036	127778681	0.365165917639896	1	0	0.365165917639896	1	0	2575645	1	23	23	1	FALSE	HETLOSS	PASS
659_bTo_pair	SH2D4A	8	19313617	19396218	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	10	3	FALSE	HETLOSS	PASS
659_bTo_pair	SH2D4B	10	80537902	80646560	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	8	2	FALSE	CNLOH	PASS
659_bTo_pair	SH2D5	1	20719732	20732837	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	SH2D6	2	85418721	85437029	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	SH2D7	15	78077808	78104909	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	SH3BGR	21	39445855	39515506	FALSE	1230	-0.572411047461507	26	38805300	41452836	NA	2	NA	NA	2	NA	2647536	NA	17	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SH3BGRL	23	81201943	81298547	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	4	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	SH3BGRL2	6	79631283	79703659	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	SH3BGRL3	1	26279176	26281522	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	SH3BP1	22	37634654	37656119	FALSE	1263	-0.528184158498335	29	36991204	37967644	NA	2	NA	NA	2	NA	976440	NA	31	20	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SH3BP2	4	2793023	2841098	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	16	2	FALSE	GAIN	PASS
659_bTo_pair	SH3BP4	2	234951973	235055714	FALSE	189	-0.580904316133535	23	233779383	236380649	0.186356639256811	1	0	0.186356639256811	1	0	2601266	1	10	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	SH3BP5	3	15254853	15341368	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	SH3BP5L	1	248810446	248826633	FALSE	88	-0.491817591117162	34	248559031	248918142	NA	2	NA	NA	2	NA	359111	NA	12	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SH3D19	4	151102751	151325632	FALSE	300	-0.423460920061428	34	143186078	151174790	NA	2	NA	NA	2	NA	7988712	NA	32	28	2	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	SH3D21	1	36306387	36324886	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	SH3GL1	19	4360370	4400547	FALSE	1124	-0.62008955817668	23	4168484	5151543	0.186356639256811	1	0	0.186356639256811	1	0	983059	1	28	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	SH3GL2	9	17579082	17797129	FALSE	581	-0.746183084602222	19	10618009	19786745	0.365165917639896	1	0	0.365165917639896	1	0	9168736	1	24	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	SH3GL3	15	83447228	83618743	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	11	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SH3GLB1	1	86704570	86748184	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	SH3GLB2	9	129007036	129028303	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	SH3KBP1	23	19533975	19887601	FALSE	1276	0.0763243231691416	59	15827382	20064777	0.308533751035793	5	NA	0.308533751035793	5	NA	4237395	NA	24	21	0	FALSE	AMP (many states)	PASS
659_bTo_pair	SH3PXD2A	10	103594027	103855543	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	22	1	FALSE	CNLOH	PASS
659_bTo_pair	SH3PXD2B	5	172325000	172454523	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	SH3RF1	4	169094256	169271105	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	SH3RF2	5	145936579	146081791	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	SH3RF3	2	109129348	109504632	FALSE	134	-0.415117895462051	39	108786846	111117811	NA	2	NA	NA	2	NA	2330965	NA	16	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SH3TC1	4	8182072	8241803	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	27	4	FALSE	GAIN	PASS
659_bTo_pair	SH3TC2	5	148923639	149063163	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	23	0	FALSE	HETLOSS	PASS
659_bTo_pair	SH3YL1	2	217730	266398	FALSE	89	-0.524158836377085	27	41620	3847167	1	2	1	1	2	1	3805547	1	18	12	3	FALSE	DIPLOID	PASS
659_bTo_pair	SHANK1	19	50661827	50719450	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	39	2	FALSE	HETLOSS	PASS
659_bTo_pair	SHANK2	11	70467856	71252577	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	34	1	FALSE	GAIN	PASS
659_bTo_pair	SHANK3	22	50674415	50733298	FALSE	1272	-0.260847831900416	46	50286270	50731222	0.298322295679939	3	NA	0.298322295679939	3	NA	444952	NA	19	32	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SHARPIN	8	144098633	144108124	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	SHB	9	37919134	38069211	FALSE	595	-0.209027397852981	47	37442028	67884575	0.365165917639896	3	1	0.365165917639896	3	1	30442547	2	35	9	0	FALSE	GAIN	PASS
659_bTo_pair	SHBG	17	7613946	7633383	FALSE	1000	-0.750226164220686	19	7324407	7655594	0.365165917639896	1	0	0.365165917639896	1	0	331187	1	31	16	1	FALSE	HETLOSS	PASS
659_bTo_pair	SHC1	1	154962298	154974395	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	SHC2	19	416583	460996	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	14	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SHC3	9	89005771	89178767	FALSE	604	-0.547885090101936	27	85547201	90613824	1	2	1	1	2	1	5066623	1	21	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	SHC4	15	48823735	48963444	FALSE	904	-0.666047806656427	20	44736698	49422632	0.365165917639896	1	0	0.365165917639896	1	0	4685934	1	30	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	SHCBP1	16	46580554	46621626	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	SHCBP1L	1	182899865	182953525	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	SHD	19	4278601	4290724	FALSE	1124	-0.62008955817668	23	4168484	5151543	0.186356639256811	1	0	0.186356639256811	1	0	983059	1	28	8	2	FALSE	HETLOSS	PASS
659_bTo_pair	SHE	1	154469772	154502113	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	SHF	15	45167214	45201175	FALSE	904	-0.666047806656427	20	44736698	49422632	0.365165917639896	1	0	0.365165917639896	1	0	4685934	1	30	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	SHH	7	155799986	155812273	FALSE	509	-0.56054035608462	23	152759958	159144708	0.186356639256811	1	0	0.186356639256811	1	0	6384750	1	20	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	SHISA2	13	26044597	26051031	FALSE	824	-0.820211361281197	14	23365275	27988570	0.365165917639896	1	0	0.365165917639896	1	0	4623295	1	32	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	SHISA3	4	42397839	42402487	FALSE	282	-0.204234033978701	47	41752697	49032685	0.365165917639896	3	1	0.365165917639896	3	1	7279988	2	31	4	0	FALSE	GAIN	PASS
659_bTo_pair	SHISA4	1	201888680	201892306	FALSE	61	-0.50531963543648	34	201209721	201898337	NA	2	NA	NA	2	NA	688616	NA	11	5	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SHISA5	3	48467798	48504826	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	SHISA6	17	11241263	11564063	FALSE	1007	-0.622785267243661	26	10825621	11992799	NA	2	NA	NA	2	NA	1167178	NA	4	10	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SHISA7	19	55428740	55442863	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SHISA8	22	41909554	41914667	FALSE	1269	-0.443951758803067	34	41205309	42514754	NA	2	NA	NA	2	NA	1309445	NA	31	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SHISA9	16	12901620	13240413	FALSE	956	-0.605095519339522	26	11976781	13235390	NA	2	NA	NA	2	NA	1258609	NA	3	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SHISAL1	22	44243667	44312851	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	5	0	FALSE	CNLOH	PASS
659_bTo_pair	SHISAL2A	1	52633344	52669683	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	SHISAL2B	5	64690308	64718090	FALSE	323	-0.645106866010582	25	58495036	67196614	0.365165917639896	1	0	0.365165917639896	1	0	8701578	1	31	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	SHKBP1	19	40576851	40591399	FALSE	1173	-0.760690164248215	19	40322104	40807873	0.365165917639896	1	0	0.365165917639896	1	0	485769	1	21	19	1	FALSE	HETLOSS	PASS
659_bTo_pair	SHLD1	20	5750393	5863912	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	SHLD2	10	87094161	87191468	FALSE	656	-0.313191165123093	43	86936767	87862427	0.192136715055622	3	NA	0.192136715055622	3	NA	925660	NA	12	15	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	SHLD3	5	65624765	65630891	FALSE	323	-0.645106866010582	25	58495036	67196614	0.365165917639896	1	0	0.365165917639896	1	0	8701578	1	31	1	0	FALSE	HETLOSS	PASS
659_bTo_pair	SHMT1	17	18327860	18363563	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	11	0	FALSE	CNLOH	PASS
659_bTo_pair	SHMT2	12	57229327	57234935	FALSE	780	-0.355982590799428	43	57138514	57456829	0.192136715055622	3	NA	0.192136715055622	3	NA	318315	NA	9	12	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SHOC2	10	110919547	111013667	FALSE	671	-0.443752838916331	34	110781853	112815244	NA	2	NA	NA	2	NA	2033391	NA	10	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SHOX2	3	158095954	158106503	FALSE	250	-0.231905273142314	46	156829339	161250770	0.298322295679939	3	NA	0.298322295679939	3	NA	4421431	NA	26	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SHPK	17	3608262	3636322	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	SHPRH	6	145864245	145964423	FALSE	431	-0.504239059693729	30	143136912	149638436	1	2	1	1	2	1	6501524	1	29	38	1	FALSE	DIPLOID	PASS
659_bTo_pair	SHQ1	3	72749277	72861914	TRUE	231	0.956477369753309	78	72372068	72867016	0.364342740527346	11	NA	0.364342740527346	11	NA	494948	NA	2	28	0	FALSE	AMP	PASS
659_bTo_pair	SHROOM1	5	132822141	132830898	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	SHROOM2	23	9786456	9949443	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	25	2	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	SHROOM3	4	76435100	76783253	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	29	3	FALSE	DIPLOID	PASS
659_bTo_pair	SHROOM4	23	50591647	50814302	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	23	0	FALSE	AMP (many states)	PASS
659_bTo_pair	SHTN1	10	116881482	117126586	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	19	0	FALSE	CNLOH	PASS
659_bTo_pair	SI	3	164978898	165078495	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	47	1	FALSE	GAIN	PASS
659_bTo_pair	SIAE	11	124633113	124695707	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	SIAH1	16	48356364	48448402	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	SIAH2	3	150741127	150763477	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	5	0	FALSE	GAIN	PASS
659_bTo_pair	SIAH3	13	45777243	45851736	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	SIDT1	3	113532296	113629578	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	28	1	FALSE	GAIN	PASS
659_bTo_pair	SIDT2	11	117178733	117197445	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	26	1	FALSE	HETLOSS	PASS
659_bTo_pair	SIGIRR	11	405716	417455	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	10	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SIGLEC1	20	3686970	3707128	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	34	8	FALSE	HETLOSS	PASS
659_bTo_pair	SIGLEC10	19	51410021	51417803	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	SIGLEC11	19	49948985	49961172	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	14	4	FALSE	HETLOSS	PASS
659_bTo_pair	SIGLEC12	19	51491357	51501789	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	SIGLEC14	19	51642553	51646801	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	SIGLEC15	18	45825512	45844080	FALSE	1100	-0.758401070483502	19	45624783	47803983	0.365165917639896	1	0	0.365165917639896	1	0	2179200	1	22	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	SIGLEC5	19	51611927	51645545	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	14	1	FALSE	HETLOSS	PASS
659_bTo_pair	SIGLEC6	19	51519525	51531856	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	SIGLEC7	19	51142299	51153526	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	SIGLEC8	19	51450847	51458456	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	SIGLEC9	19	51124908	51136651	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	12	2	FALSE	HETLOSS	PASS
659_bTo_pair	SIGLECL1	19	51246348	51269330	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	SIGMAR1	9	34634722	34637809	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	5	0	FALSE	CNLOH	PASS
659_bTo_pair	SIK2	11	111602391	111730853	FALSE	723	-0.542672588801529	29	108383083	111912852	NA	2	NA	NA	2	NA	3529769	NA	24	20	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SIK3	11	116843402	117098437	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	28	2	FALSE	HETLOSS	PASS
659_bTo_pair	SIKE1	1	114769479	114780685	FALSE	37	-0.781726809773331	16	114718157	116404480	0.365165917639896	1	0	0.365165917639896	1	0	1686323	1	12	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	SIL1	5	138946720	139293557	FALSE	337	0.55019851258722	68	138753479	138951173	0.364342740527346	8	NA	0.364342740527346	8	NA	197694	NA	3	10	0	TRUE	INDETERMINATE	PASS
659_bTo_pair	SIM1	6	100385015	100464929	FALSE	411	-0.455063723695114	34	95586870	106069771	NA	2	NA	NA	2	NA	10482901	NA	27	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SIM2	21	36699133	36749917	FALSE	1228	-0.430637379115077	30	36009679	38367602	1	2	1	1	2	1	2357923	1	17	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	SIMC1	5	176238367	176345991	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	SIN3A	15	75369379	75455842	FALSE	915	1.83210282958439	100	75369601	75455854	0.364342740527346	23	NA	0.364342740527346	23	NA	86253	NA	1	48	0	FALSE	AMP	PASS
659_bTo_pair	SIN3B	19	16829400	16880353	FALSE	1154	-0.533888138892061	27	16361883	17271664	1	2	1	1	2	1	909781	1	23	24	2	FALSE	DIPLOID	PASS
659_bTo_pair	SINHCAF	12	31280584	31327058	FALSE	760	-0.171000692864655	50	31089058	38321207	0.218007130395584	4	2	0.218007130395584	4	2	7232149	2	15	5	0	FALSE	TETRAPLOID	PASS
659_bTo_pair	SIPA1	11	65638097	65650930	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	19	0	FALSE	GAIN	PASS
659_bTo_pair	SIPA1L1	14	71320449	71741229	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	33	0	FALSE	DIPLOID	PASS
659_bTo_pair	SIPA1L2	1	232397965	232561558	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	32	4	FALSE	HETLOSS	PASS
659_bTo_pair	SIPA1L3	19	37907228	38208372	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	32	2	FALSE	HETLOSS	PASS
659_bTo_pair	SIRPA	20	1894167	1940592	FALSE	1196	0.0145909737502021	56	1551807	2207199	0.365165917639896	4	NA	0.365165917639896	4	NA	655392	NA	7	12	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SIRPB1	20	1563521	1620061	FALSE	1196	0.0145909737502021	56	1551807	2207199	0.365165917639896	4	NA	0.365165917639896	4	NA	655392	NA	7	12	6	FALSE	GAIN (many states)	PASS
659_bTo_pair	SIRPB2	20	1470741	1491587	FALSE	1195	-0.60512265366003	23	87765	1537211	0.186356639256811	1	0	0.186356639256811	1	0	1449446	1	33	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	SIRPD	20	1534251	1558843	FALSE	1195	-0.60512265366003	23	87765	1537211	0.186356639256811	1	0	0.186356639256811	1	0	1449446	1	33	5	1	TRUE	HETLOSS	PASS
659_bTo_pair	SIRPG	20	1629152	1657779	FALSE	1196	0.0145909737502021	56	1551807	2207199	0.365165917639896	4	NA	0.365165917639896	4	NA	655392	NA	7	8	4	FALSE	GAIN (many states)	PASS
659_bTo_pair	SIRT1	10	67884669	67918390	FALSE	649	-0.498971247588349	34	63133428	68527348	NA	2	NA	NA	2	NA	5393920	NA	15	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SIRT2	19	38878555	38899862	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	SIRT3	11	215458	236931	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	8	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SIRT4	12	120302316	120313249	FALSE	810	-0.438737881374958	34	120127967	120903912	NA	2	NA	NA	2	NA	775945	NA	20	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SIRT5	6	13574529	13615158	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	SIRT6	19	4174109	4182604	FALSE	1124	-0.62008955817668	23	4168484	5151543	0.186356639256811	1	0	0.186356639256811	1	0	983059	1	28	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	SIRT7	17	81911939	81921323	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	SIT1	9	35649295	35650950	FALSE	590	0.518634267342274	67	35107891	35683151	0.364342740527346	7	2	0.364342740527346	7	2	575260	5	11	4	1	FALSE	AMP	PASS
659_bTo_pair	SIVA1	14	104753100	104768494	FALSE	883	-0.69016701050987	21	103712930	104759455	0.140309795179477	0	0	0.140309795179477	0	0	1046525	0	14	4	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SIX1	14	60643415	60658259	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	SIX2	2	45005161	45009430	FALSE	106	-0.392858868113437	39	42335725	46184779	NA	2	NA	NA	2	NA	3849054	NA	22	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SIX3	2	44941898	44946077	FALSE	106	-0.392858868113437	39	42335725	46184779	NA	2	NA	NA	2	NA	3849054	NA	22	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SIX4	14	60709528	60724348	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	SIX5	19	45764785	45769226	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	11	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SIX6	14	60508951	60512850	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	SKA1	18	50374995	50394173	FALSE	1103	-0.712987700962632	19	48029643	51023578	0.365165917639896	1	0	0.365165917639896	1	0	2993935	1	20	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	SKA2	17	59109951	59155269	FALSE	1058	-0.423419268198233	34	58422367	59890994	NA	2	NA	NA	2	NA	1468627	NA	20	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SKA3	13	21153595	21176602	FALSE	821	-0.916323932116457	13	21147296	21604174	0.365165917639896	1	0	0.365165917639896	1	0	456878	1	5	11	3	FALSE	HETLOSS	PASS
659_bTo_pair	SKAP1	17	48133440	48430275	FALSE	1049	-0.703360644300681	22	47810585	48529853	0.291335969972972	1	0	0.291335969972972	1	0	719268	1	15	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	SKAP2	7	26667062	26995239	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	12	1	FALSE	GAIN	PASS
659_bTo_pair	SKI	1	2228695	2310119	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	SKIDA1	10	21513478	21526368	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	11	1	FALSE	CNLOH	PASS
659_bTo_pair	SKIL	3	170357678	170396835	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	12	0	FALSE	GAIN	PASS
659_bTo_pair	SKIV2L	6	31959080	31969755	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	28	4	FALSE	HETLOSS	PASS
659_bTo_pair	SKOR1	15	67819704	67834561	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	SKOR2	18	47206322	47251603	FALSE	1100	-0.758401070483502	19	45624783	47803983	0.365165917639896	1	0	0.365165917639896	1	0	2179200	1	22	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	SKP1	5	134148935	134177038	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	SKP2	5	36151989	36184319	FALSE	314	-0.173277106490387	51	35904615	38924434	0.365165917639896	3	NA	0.365165917639896	3	NA	3019819	NA	16	12	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	SLA	8	133036724	133103054	FALSE	565	-0.282741903777565	44	129748604	134610527	0.345317016959666	3	1	0.345317016959666	3	1	4861923	2	18	10	2	FALSE	GAIN	PASS
659_bTo_pair	SLA2	20	36612318	36646216	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLAIN1	13	77697854	77764242	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	13	0	FALSE	CNLOH	PASS
659_bTo_pair	SLAIN2	4	48341322	48426212	FALSE	282	-0.204234033978701	47	41752697	49032685	0.365165917639896	3	1	0.365165917639896	3	1	7279988	2	31	12	1	FALSE	GAIN	PASS
659_bTo_pair	SLAMF1	1	160608100	160647295	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	SLAMF6	1	160485030	160523262	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLAMF7	1	160739057	160754821	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLAMF8	1	159826750	159837249	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLAMF9	1	159951492	159954254	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLBP	4	1692800	1712555	FALSE	272	-0.300029378244858	40	85877	1745020	0.308149309490068	3	1	0.308149309490068	3	1	1659143	2	29	8	1	FALSE	GAIN	PASS
659_bTo_pair	SLC10A1	14	69775417	69797289	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC10A2	13	103043998	103066846	FALSE	842	-0.555564796404534	26	103046205	109206791	NA	2	NA	NA	2	NA	6160586	NA	9	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC10A3	23	154487306	154490690	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	6	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	SLC10A4	4	48483343	48489196	FALSE	282	-0.204234033978701	47	41752697	49032685	0.365165917639896	3	1	0.365165917639896	3	1	7279988	2	31	6	0	FALSE	GAIN	PASS
659_bTo_pair	SLC10A5	8	81693607	81696174	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	6	0	FALSE	GAIN	PASS
659_bTo_pair	SLC10A6	4	86823468	86849263	FALSE	291	-0.458701040497953	34	83536708	87613131	NA	2	NA	NA	2	NA	4076423	NA	17	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC10A7	4	146253975	146521964	FALSE	300	-0.423460920061428	34	143186078	151174790	NA	2	NA	NA	2	NA	7988712	NA	32	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC11A1	2	218382029	218396894	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	15	2	FALSE	HETLOSS	PASS
659_bTo_pair	SLC11A2	12	50979401	51028566	FALSE	772	-0.61197679162419	26	50109466	51920864	NA	2	NA	NA	2	NA	1811398	NA	27	18	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC12A1	15	48178438	48304078	FALSE	904	-0.666047806656427	20	44736698	49422632	0.365165917639896	1	0	0.365165917639896	1	0	4685934	1	30	30	2	FALSE	HETLOSS	PASS
659_bTo_pair	SLC12A2	5	128083766	128189688	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	29	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC12A3	16	56865207	56915850	FALSE	970	-0.446547319806241	34	56865490	57067828	NA	2	NA	NA	2	NA	202338	NA	4	27	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC12A4	16	67943474	67969601	FALSE	979	-0.429457644119204	34	67645299	68698317	NA	2	NA	NA	2	NA	1053018	NA	33	28	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC12A5	20	46021690	46060152	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	28	2	FALSE	DIPLOID	PASS
659_bTo_pair	SLC12A6	15	34229996	34338060	FALSE	888	-0.723950250184678	19	32774281	34342000	0.365165917639896	1	0	0.365165917639896	1	0	1567719	1	10	27	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC12A7	5	1050376	1112035	FALSE	308	-0.255094097331532	44	92297	1246091	0.345317016959666	3	1	0.345317016959666	3	1	1153794	2	18	26	7	FALSE	GAIN	PASS
659_bTo_pair	SLC12A8	3	125082636	125212864	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	15	0	FALSE	GAIN	PASS
659_bTo_pair	SLC12A9	7	100826820	100867009	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC13A1	7	123113531	123199986	FALSE	490	-0.576498321273708	26	116888215	124790543	NA	2	NA	NA	2	NA	7902328	NA	33	17	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC13A2	17	28473293	28497781	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	SLC13A3	20	46557823	46684467	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	SLC13A4	7	135681237	135729258	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	16	2	FALSE	DIPLOID	PASS
659_bTo_pair	SLC13A5	17	6684713	6713567	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	14	1	FALSE	HETLOSS	PASS
659_bTo_pair	SLC14A1	18	45687025	45752520	FALSE	1100	-0.758401070483502	19	45624783	47803983	0.365165917639896	1	0	0.365165917639896	1	0	2179200	1	22	9	4	FALSE	HETLOSS	PASS
659_bTo_pair	SLC14A2	18	45212995	45683686	FALSE	1100	-0.758401070483502	19	45624783	47803983	0.365165917639896	1	0	0.365165917639896	1	0	2179200	1	22	20	5	FALSE	HETLOSS	PASS
659_bTo_pair	SLC15A1	13	98683801	98752654	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	23	3	FALSE	CNLOH	PASS
659_bTo_pair	SLC15A2	3	121894089	121944102	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	22	0	FALSE	GAIN	PASS
659_bTo_pair	SLC15A3	11	60937084	60952530	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	12	0	FALSE	GAIN	PASS
659_bTo_pair	SLC15A4	12	128793191	128823983	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC15A5	12	16188485	16277685	FALSE	753	-0.517160615058114	27	12726042	18242949	1	2	1	1	2	1	5516907	1	31	10	2	FALSE	DIPLOID	PASS
659_bTo_pair	SLC16A1	1	112911847	112957013	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	8	3	FALSE	HETLOSS	PASS
659_bTo_pair	SLC16A10	6	111087503	111231194	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC16A11	17	7041630	7043923	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC16A12	10	89430299	89556641	FALSE	660	-0.0564321858974841	55	89034693	89433298	0.328696605851359	4	NA	0.328696605851359	4	NA	398605	NA	8	10	0	TRUE	GAIN (many states)	PASS
659_bTo_pair	SLC16A13	17	7036075	7040121	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	7	2	FALSE	HETLOSS	PASS
659_bTo_pair	SLC16A14	2	230034974	230068999	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC16A2	23	74421461	74533917	FALSE	1317	0.217996879888221	62	71533297	76176924	0.364342740527346	5	NA	0.364342740527346	5	NA	4643627	NA	35	10	0	FALSE	AMP (many states)	PASS
659_bTo_pair	SLC16A3	17	82228397	82261129	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC16A4	1	110362848	110391082	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC16A5	17	75087727	75106162	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	SLC16A6	17	68267026	68291267	FALSE	1070	-0.476939588153593	30	65635933	68457397	1	2	1	1	2	1	2821464	1	18	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC16A7	12	59596067	59789855	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC16A8	22	38078134	38084093	FALSE	1265	-0.53141020507802	29	38041114	39152464	NA	2	NA	NA	2	NA	1111350	NA	31	9	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC16A9	10	59650761	59736002	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	8	0	FALSE	CNLOH	PASS
659_bTo_pair	SLC17A1	6	25782897	25832059	FALSE	373	-0.695027086668472	22	24174718	26017145	0.291335969972972	1	0	0.291335969972972	1	0	1842427	1	23	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC17A2	6	25912754	25930726	FALSE	373	-0.695027086668472	22	24174718	26017145	0.291335969972972	1	0	0.291335969972972	1	0	1842427	1	23	11	2	FALSE	HETLOSS	PASS
659_bTo_pair	SLC17A3	6	25833066	25882286	FALSE	373	-0.695027086668472	22	24174718	26017145	0.291335969972972	1	0	0.291335969972972	1	0	1842427	1	23	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	SLC17A4	6	25754699	25781191	FALSE	373	-0.695027086668472	22	24174718	26017145	0.291335969972972	1	0	0.291335969972972	1	0	1842427	1	23	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	SLC17A5	6	73593379	73654155	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	SLC17A6	11	22338097	22379503	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	14	0	TRUE	DIPLOID	PASS
659_bTo_pair	SLC17A7	19	49429401	49442360	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC17A8	12	100357079	100422059	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC17A9	20	62952647	62969585	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC18A1	8	20144855	20183206	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	16	2	FALSE	HETLOSS	PASS
659_bTo_pair	SLC18A2	10	117241073	117279430	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	15	2	FALSE	CNLOH	PASS
659_bTo_pair	SLC18A3	10	49610301	49612720	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	6	1	FALSE	CNLOH	PASS
659_bTo_pair	SLC18B1	6	132769370	132813339	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC19A1	21	45493572	45544411	FALSE	1239	-0.568555801579827	23	44960223	46664365	0.186356639256811	1	0	0.186356639256811	1	0	1704142	1	18	32	6	FALSE	HETLOSS	PASS
659_bTo_pair	SLC19A2	1	169463909	169486003	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	SLC19A3	2	227683763	227718031	FALSE	186	-0.695736902539597	22	226867246	227993567	0.291335969972972	1	0	0.291335969972972	1	0	1126321	1	19	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC1A1	9	4490444	4587469	FALSE	574	-0.919846303005392	13	2198627	4849539	0.365165917639896	1	0	0.365165917639896	1	0	2650912	1	11	13	3	FALSE	HETLOSS	PASS
659_bTo_pair	SLC1A2	11	35251205	35420063	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC1A3	5	36606355	36688334	FALSE	314	-0.173277106490387	51	35904615	38924434	0.365165917639896	3	NA	0.365165917639896	3	NA	3019819	NA	16	11	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	SLC1A4	2	64988477	65023865	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	SLC1A5	19	46774883	46788594	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	11	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SLC1A6	19	14950034	15022990	FALSE	1149	-0.413849407553013	38	14562540	15157819	0.164051638880412	2	0	0.164051638880412	2	0	595279	2	17	22	4	FALSE	CNLOH	PASS
659_bTo_pair	SLC1A7	1	53087179	53142632	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	SLC20A1	2	112645857	112663827	FALSE	138	-0.423459519967032	34	112060069	113201423	NA	2	NA	NA	2	NA	1141354	NA	21	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC20A2	8	42416475	42541926	FALSE	541	-0.815492706726597	16	42338595	47735321	0.365165917639896	1	0	0.365165917639896	1	0	5396726	1	15	13	2	FALSE	HETLOSS	PASS
659_bTo_pair	SLC22A1	6	160121789	160158718	FALSE	444	-0.505238631103688	30	158776425	160753038	1	2	1	1	2	1	1976613	1	17	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC22A10	11	63137867	63369718	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	24	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SLC22A11	11	64555626	64572875	FALSE	703	1.76300320161995	98	64359269	64556030	0.364342740527346	22	NA	0.364342740527346	22	NA	196761	NA	2	12	0	TRUE	AMP	PASS
659_bTo_pair	SLC22A12	11	64590641	64602353	FALSE	704	-0.387292846909492	39	64556376	64803187	NA	2	NA	NA	2	NA	246811	NA	7	13	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC22A13	3	38265812	38278757	FALSE	212	-0.750996176556328	19	38165958	40533064	0.365165917639896	1	0	0.365165917639896	1	0	2367106	1	26	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC22A14	3	38282294	38318575	FALSE	212	-0.750996176556328	19	38165958	40533064	0.365165917639896	1	0	0.365165917639896	1	0	2367106	1	26	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	SLC22A15	1	115976498	116070054	FALSE	37	-0.781726809773331	16	114718157	116404480	0.365165917639896	1	0	0.365165917639896	1	0	1686323	1	12	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC22A16	6	110424687	110476641	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC22A17	14	23346306	23352912	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC22A18	11	2899721	2925246	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC22A18AS	11	2887780	2903740	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC22A2	6	160171061	160277638	FALSE	444	-0.505238631103688	30	158776425	160753038	1	2	1	1	2	1	1976613	1	17	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	SLC22A23	6	3268962	3457022	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	13	2	FALSE	DIPLOID	PASS
659_bTo_pair	SLC22A24	11	63079940	63144221	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	12	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SLC22A25	11	63163776	63229652	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	11	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SLC22A3	6	160348268	160452581	FALSE	444	-0.505238631103688	30	158776425	160753038	1	2	1	1	2	1	1976613	1	17	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	SLC22A31	16	89195761	89201664	FALSE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	7	3	FALSE	HETLOSS	PASS
659_bTo_pair	SLC22A4	5	132294443	132344206	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC22A5	5	132369752	132395614	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC22A6	11	62936385	62984983	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	12	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SLC22A7	6	43295694	43305538	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC22A8	11	62989154	63015839	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	11	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SLC22A9	11	63369789	63410294	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	11	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SLC23A1	5	139367196	139384553	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	16	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SLC23A2	20	4852356	5010293	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	SLC23A3	2	219161465	219170095	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC24A1	15	65611366	65660995	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	20	3	FALSE	HETLOSS	PASS
659_bTo_pair	SLC24A2	9	19507452	19786928	FALSE	581	-0.746183084602222	19	10618009	19786745	0.365165917639896	1	0	0.365165917639896	1	0	9168736	1	24	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC24A3	20	19212646	19722937	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC24A4	14	92322581	92501483	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	18	1	FALSE	DIPLOID	PASS
659_bTo_pair	SLC24A5	15	48120972	48142672	FALSE	904	-0.666047806656427	20	44736698	49422632	0.365165917639896	1	0	0.365165917639896	1	0	4685934	1	30	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC25A1	22	19175575	19178830	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	9	0	FALSE	CNLOH	PASS
659_bTo_pair	SLC25A10	17	81712236	81721016	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	SLC25A11	17	4937130	4940251	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC25A12	2	171784370	171999859	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	29	2	FALSE	DIPLOID	PASS
659_bTo_pair	SLC25A13	7	96120220	96322147	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC25A14	23	130339888	130373361	FALSE	1335	0.100243493544559	59	130066940	134244999	0.308533751035793	5	NA	0.308533751035793	5	NA	4178059	NA	21	10	0	FALSE	AMP (many states)	PASS
659_bTo_pair	SLC25A15	13	40789412	40810111	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	SLC25A16	10	68477999	68527474	FALSE	649	-0.498971247588349	34	63133428	68527348	NA	2	NA	NA	2	NA	5393920	NA	15	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC25A17	22	40769630	40819399	FALSE	1267	-0.448885551917151	34	39313004	41087696	NA	2	NA	NA	2	NA	1774692	NA	24	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC25A18	22	17563439	17590994	FALSE	1240	-0.594689860601271	26	15528179	18606839	NA	2	NA	NA	2	NA	3078660	NA	21	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC25A19	17	75272981	75289510	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC25A2	5	141302629	141304045	FALSE	339	-0.747375863769128	19	140786750	141303022	0.365165917639896	1	0	0.365165917639896	1	0	516272	1	34	4	0	TRUE	HETLOSS	PASS
659_bTo_pair	SLC25A20	3	48856931	48898993	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC25A21	14	36678431	37172866	FALSE	856	-0.275818745994621	46	36581441	37500152	0.298322295679939	3	NA	0.298322295679939	3	NA	918711	NA	4	11	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	SLC25A22	11	790475	798333	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	12	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SLC25A23	19	6436079	6465203	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	SLC25A24	1	108134036	108200849	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC25A25	9	128068201	128109245	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC25A26	3	66133610	66388116	FALSE	228	-0.860828429618822	13	64010871	69385924	0.365165917639896	1	0	0.365165917639896	1	0	5375053	1	16	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC25A27	6	46652915	46678193	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC25A28	10	99610522	99620609	FALSE	666	-0.516928660882684	29	98163350	100063639	NA	2	NA	NA	2	NA	1900289	NA	16	6	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC25A29	14	100291111	100306547	FALSE	876	-0.546199181806584	27	96039535	102050530	1	2	1	1	2	1	6010995	1	30	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC25A3	12	98593591	98606379	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC25A30	13	45393316	45418455	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC25A31	4	127730378	127774299	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC25A32	8	103398635	103415189	FALSE	561	-0.210477706860293	47	102652438	116770243	0.365165917639896	3	1	0.365165917639896	3	1	14117805	2	32	8	0	FALSE	GAIN	PASS
659_bTo_pair	SLC25A33	1	9539482	9585179	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	SLC25A34	1	15736405	15741396	FALSE	6	-0.41295085321191	39	13779356	15847467	NA	2	NA	NA	2	NA	2068111	NA	18	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC25A35	17	8287763	8295343	FALSE	1005	-0.533729334585785	29	8204923	8370291	NA	2	NA	NA	2	NA	165368	NA	9	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC25A36	3	140941830	140980961	FALSE	246	-0.322519280750539	43	139344000	142447976	0.192136715055622	3	NA	0.192136715055622	3	NA	3103976	NA	19	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SLC25A37	8	23528805	23575463	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC25A38	3	39383324	39397351	FALSE	212	-0.750996176556328	19	38165958	40533064	0.365165917639896	1	0	0.365165917639896	1	0	2367106	1	26	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC25A39	17	44319625	44324870	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	12	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC25A4	4	185143241	185150382	FALSE	305	-0.853036814117495	12	184629284	186555336	0.365165917639896	1	0	0.365165917639896	1	0	1926052	1	22	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC25A40	7	87833568	87876357	FALSE	479	-0.448308050861149	30	87602941	92590330	1	2	1	1	2	1	4987389	1	30	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC25A41	19	6426037	6433779	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	SLC25A42	19	19063999	19112888	FALSE	1159	-0.165917001507678	49	18177228	19138502	0.365165917639896	3	1	0.365165917639896	3	1	961274	2	36	8	0	FALSE	GAIN	PASS
659_bTo_pair	SLC25A43	23	119399060	119454478	FALSE	1326	0.081501992784242	59	111246621	119452040	0.308533751035793	5	NA	0.308533751035793	5	NA	8205419	NA	28	8	2	TRUE	AMP (many states)	PASS
659_bTo_pair	SLC25A44	1	156193932	156212796	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC25A45	11	65375192	65383701	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	8	0	FALSE	GAIN	PASS
659_bTo_pair	SLC25A46	5	110738136	110765161	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC25A47	14	100323337	100330378	FALSE	876	-0.546199181806584	27	96039535	102050530	1	2	1	1	2	1	6010995	1	30	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	SLC25A48	5	135579202	135889770	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	SLC25A5	23	119468400	119471319	FALSE	1327	1.0307148866152	81	119453040	119592470	0.364342740527346	12	NA	0.364342740527346	12	NA	139430	NA	5	6	1	FALSE	AMP	PASS
659_bTo_pair	SLC25A51	9	37879400	37904353	FALSE	595	-0.209027397852981	47	37442028	67884575	0.365165917639896	3	1	0.365165917639896	3	1	30442547	2	35	4	1	FALSE	GAIN	PASS
659_bTo_pair	SLC25A52	18	31759562	31760880	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	4	0	FALSE	GAIN	PASS
659_bTo_pair	SLC25A53	23	104099214	104157027	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	9	0	FALSE	AMP (many states)	PASS
659_bTo_pair	SLC26A1	4	979073	993440	FALSE	272	-0.300029378244858	40	85877	1745020	0.308149309490068	3	1	0.308149309490068	3	1	1659143	2	29	12	2	FALSE	GAIN	PASS
659_bTo_pair	SLC26A10	12	57619527	57626151	FALSE	782	-0.458497547164839	34	57472671	57623111	NA	2	NA	NA	2	NA	150440	NA	11	19	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC26A11	17	80219699	80253500	FALSE	1081	-0.503130193321286	34	78873805	80288187	NA	2	NA	NA	2	NA	1414382	NA	19	20	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC26A2	5	149960737	149993455	FALSE	344	-0.892413249330443	13	149616577	150050506	0.365165917639896	1	0	0.365165917639896	1	0	433929	1	6	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC26A3	7	107765467	107803225	FALSE	488	-0.464127371400283	34	107070260	116559206	NA	2	NA	NA	2	NA	9488946	NA	33	21	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC26A4	7	107660635	107717809	FALSE	488	-0.464127371400283	34	107070260	116559206	NA	2	NA	NA	2	NA	9488946	NA	33	21	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC26A5	7	103352730	103446177	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	30	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC26A6	3	48625723	48635493	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	21	2	FALSE	HETLOSS	PASS
659_bTo_pair	SLC26A7	8	91209494	91398152	FALSE	557	-0.436164323203642	34	90006291	91395139	NA	2	NA	NA	2	NA	1388848	NA	9	20	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC26A8	6	35943514	36024868	FALSE	393	-0.47521086997284	30	35476361	36677919	1	2	1	1	2	1	1201558	1	21	21	1	FALSE	DIPLOID	PASS
659_bTo_pair	SLC26A9	1	205913048	205943460	FALSE	69	-0.48847123055109	34	205798087	206732058	NA	2	NA	NA	2	NA	933971	NA	14	23	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC27A1	19	17468769	17506168	FALSE	1155	-0.249305971018279	46	17273895	17821522	0.298322295679939	3	NA	0.298322295679939	3	NA	547627	NA	25	13	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SLC27A2	15	50182196	50236395	FALSE	906	-0.753975485974629	19	49508303	51105073	0.365165917639896	1	0	0.365165917639896	1	0	1596770	1	12	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC27A3	1	153774354	153780157	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	SLC27A4	9	128340646	128361470	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC27A5	19	58479512	58512413	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	19	1	FALSE	GAIN	PASS
659_bTo_pair	SLC27A6	5	128538013	129033642	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC28A1	15	84884654	84945796	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	19	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SLC28A2	15	45252230	45277845	FALSE	904	-0.666047806656427	20	44736698	49422632	0.365165917639896	1	0	0.365165917639896	1	0	4685934	1	30	17	3	FALSE	HETLOSS	PASS
659_bTo_pair	SLC28A3	9	84275457	84340683	FALSE	600	-0.379943666479055	39	84001060	84731654	NA	2	NA	NA	2	NA	730594	NA	3	18	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC29A1	6	44219505	44234151	FALSE	403	-0.460377194073257	34	44113878	44253574	NA	2	NA	NA	2	NA	139696	NA	6	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC29A2	11	66362521	66372214	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	12	0	FALSE	GAIN	PASS
659_bTo_pair	SLC29A3	10	71319258	71381423	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	8	3	FALSE	CNLOH	PASS
659_bTo_pair	SLC29A4	7	5274369	5306870	FALSE	453	-0.32600279290147	42	3619174	5500988	0.189552622934988	3	0	0.189552622934988	3	0	1881814	3	12	13	1	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	SLC2A1	1	42925375	42959176	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC2A10	20	46709487	46736347	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC2A11	22	23856703	23886309	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	15	0	FALSE	CNLOH	PASS
659_bTo_pair	SLC2A12	6	133988697	134052636	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	10	0	TRUE	DIPLOID	PASS
659_bTo_pair	SLC2A13	12	39755021	40106089	FALSE	761	-0.518834393047475	27	38323923	40473121	1	2	1	1	2	1	2149198	1	8	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC2A14	12	7812512	7891148	FALSE	745	-0.243574834353832	44	6965649	8175835	0.345317016959666	3	1	0.345317016959666	3	1	1210186	2	26	11	1	FALSE	GAIN	PASS
659_bTo_pair	SLC2A2	3	170996348	171026750	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	12	0	FALSE	GAIN	PASS
659_bTo_pair	SLC2A3	12	7919230	7936275	FALSE	745	-0.243574834353832	44	6965649	8175835	0.345317016959666	3	1	0.345317016959666	3	1	1210186	2	26	10	3	FALSE	GAIN	PASS
659_bTo_pair	SLC2A4	17	7281667	7288257	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	SLC2A4RG	20	63739861	63743505	FALSE	1225	-0.32421417626258	43	63733191	64273510	0.192136715055622	3	NA	0.192136715055622	3	NA	540319	NA	22	8	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	SLC2A5	1	9035107	9088478	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC2A6	9	133471095	133479137	FALSE	627	-0.867007674319489	12	132986776	134157867	0.365165917639896	1	0	0.365165917639896	1	0	1171091	1	28	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC2A7	1	9003300	9026345	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	SLC2A8	9	127397138	127408424	FALSE	619	-0.820686000870706	14	125203036	127778681	0.365165917639896	1	0	0.365165917639896	1	0	2575645	1	23	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	SLC2A9	4	9771153	10054936	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	20	5	FALSE	GAIN	PASS
659_bTo_pair	SLC30A1	1	211571568	211578742	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC30A10	1	219685427	219958647	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC30A2	1	26037252	26046133	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC30A3	2	27253684	27275817	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC30A4	15	45479611	45522807	FALSE	904	-0.666047806656427	20	44736698	49422632	0.365165917639896	1	0	0.365165917639896	1	0	4685934	1	30	8	2	FALSE	HETLOSS	PASS
659_bTo_pair	SLC30A5	5	69093646	69131069	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	19	1	FALSE	HETLOSS	PASS
659_bTo_pair	SLC30A6	2	32165841	32224379	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC30A7	1	100896076	100981753	FALSE	32	-0.441874489475641	34	100273343	107324874	NA	2	NA	NA	2	NA	7051531	NA	18	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC30A8	8	116950273	117176714	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	9	2	FALSE	GAIN	PASS
659_bTo_pair	SLC30A9	4	41990472	42090457	FALSE	282	-0.204234033978701	47	41752697	49032685	0.365165917639896	3	1	0.365165917639896	3	1	7279988	2	31	18	0	FALSE	GAIN	PASS
659_bTo_pair	SLC31A1	9	113221562	113264492	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC31A2	9	113150942	113164137	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	SLC32A1	20	38724462	38729372	FALSE	1205	-0.619744376635615	23	37518926	41023791	0.186356639256811	1	0	0.186356639256811	1	0	3504865	1	19	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC33A1	3	155821024	155854456	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	9	0	FALSE	GAIN	PASS
659_bTo_pair	SLC34A1	5	177379235	177398848	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC34A2	4	25648011	25678748	FALSE	278	-0.217595572850614	44	20704713	38137253	0.345317016959666	3	1	0.345317016959666	3	1	17432540	2	29	19	0	FALSE	GAIN	PASS
659_bTo_pair	SLC34A3	9	137230757	137236554	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	13	1	FALSE	HETLOSS	PASS
659_bTo_pair	SLC35A1	6	87470623	87512336	FALSE	407	-0.739487270214454	18	87337082	88963417	0.180216333675297	0	0	0.180216333675297	0	0	1626335	0	11	8	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SLC35A2	23	48903180	48911958	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	10	1	FALSE	AMP (many states)	PASS
659_bTo_pair	SLC35A3	1	99969351	100035637	FALSE	31	-0.34979279123772	43	94820443	100270584	0.192136715055622	3	NA	0.192136715055622	3	NA	5450141	NA	22	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SLC35A4	5	140564456	140569103	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SLC35A5	3	112561709	112585577	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	9	0	FALSE	GAIN	PASS
659_bTo_pair	SLC35B1	17	49700934	49709014	FALSE	1053	-0.561829441831031	26	49646906	50626743	NA	2	NA	NA	2	NA	979837	NA	25	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC35B2	6	44254096	44257890	FALSE	404	1.2877892239248	86	44254772	44265729	0.364342740527346	15	NA	0.364342740527346	15	NA	10957	NA	2	7	0	FALSE	AMP	PASS
659_bTo_pair	SLC35B3	6	8411463	8435611	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC35B4	7	134289332	134317051	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC35C1	11	45804072	45813015	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC35C2	20	46345980	46364458	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC35D1	1	66999332	67054099	FALSE	23	-0.326404897444941	43	65224778	71080923	0.192136715055622	3	NA	0.192136715055622	3	NA	5856145	NA	29	12	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SLC35D2	9	96313444	96383710	FALSE	608	-0.541405085979946	27	95522076	99069752	1	2	1	1	2	1	3547676	1	31	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC35D3	6	136922264	136925639	FALSE	427	-0.614116824618693	26	135285680	137161691	NA	2	NA	NA	2	NA	1876011	NA	10	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC35E1	19	16549831	16572382	FALSE	1154	-0.533888138892061	27	16361883	17271664	1	2	1	1	2	1	909781	1	23	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC35E2A	1	1724838	1745999	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	SLC35E2B	1	1659529	1692728	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	SLC35E3	12	68746106	68793964	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC35E4	22	30635652	30669016	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	10	0	FALSE	CNLOH	PASS
659_bTo_pair	SLC35F1	6	117907526	118317676	FALSE	421	-0.534093125771784	29	117482879	126348569	NA	2	NA	NA	2	NA	8865690	NA	29	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC35F2	11	107790991	107928293	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC35F3	1	233904933	234324516	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC35F4	14	57563922	57982194	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	13	3	FALSE	DIPLOID	PASS
659_bTo_pair	SLC35F5	2	113705011	113756823	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	18	2	FALSE	DIPLOID	PASS
659_bTo_pair	SLC35F6	2	26764284	26781231	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC35G1	10	93893973	93956062	FALSE	662	-0.410954559094016	36	89715119	94762760	0.365165917639896	2	0	0.365165917639896	2	0	5047641	2	33	7	0	FALSE	CNLOH	PASS
659_bTo_pair	SLC35G2	3	136818647	136855892	FALSE	243	0.194698893310263	62	134795430	136855479	0.364342740527346	5	NA	0.364342740527346	5	NA	2060049	NA	6	6	0	TRUE	AMP (many states)	PASS
659_bTo_pair	SLC35G3	17	35192520	35194523	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SLC35G4	18	11609596	11610612	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	4	2	FALSE	GAIN	PASS
659_bTo_pair	SLC35G5	8	11330888	11332208	FALSE	516	-0.746159577374248	19	10611830	11564127	0.365165917639896	1	0	0.365165917639896	1	0	952297	1	9	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	SLC35G6	17	7481332	7483496	FALSE	1000	-0.750226164220686	19	7324407	7655594	0.365165917639896	1	0	0.365165917639896	1	0	331187	1	31	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	SLC36A1	5	151437046	151492381	FALSE	350	-0.819899512516675	16	150444373	153997804	0.365165917639896	1	0	0.365165917639896	1	0	3553431	1	25	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC36A2	5	151314978	151347590	FALSE	350	-0.819899512516675	16	150444373	153997804	0.365165917639896	1	0	0.365165917639896	1	0	3553431	1	25	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC36A3	5	151276762	151303766	FALSE	350	-0.819899512516675	16	150444373	153997804	0.365165917639896	1	0	0.365165917639896	1	0	3553431	1	25	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	SLC36A4	11	93144171	93197964	FALSE	715	-0.44311716102168	34	90214063	94410681	NA	2	NA	NA	2	NA	4196618	NA	16	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC37A1	21	42496008	42581440	FALSE	1234	-0.544212636077936	27	41740855	44141314	1	2	1	1	2	1	2400459	1	31	20	1	FALSE	DIPLOID	PASS
659_bTo_pair	SLC37A2	11	125063067	125090312	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	20	1	FALSE	DIPLOID	PASS
659_bTo_pair	SLC37A3	7	140293693	140404433	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	SLC37A4	11	119024114	119030906	FALSE	728	-0.487905654975058	30	118527582	119195409	1	2	1	1	2	1	667827	1	26	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC38A1	12	46183063	46270017	FALSE	766	-0.557616146966431	26	45922034	47968195	NA	2	NA	NA	2	NA	2046161	NA	13	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC38A10	17	81245000	81295547	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	22	1	FALSE	DIPLOID	PASS
659_bTo_pair	SLC38A11	2	164896186	164955525	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC38A2	12	46358189	46372867	FALSE	766	-0.557616146966431	26	45922034	47968195	NA	2	NA	NA	2	NA	2046161	NA	13	15	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC38A3	3	50205246	50221486	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC38A4	12	46764761	46832408	FALSE	766	-0.557616146966431	26	45922034	47968195	NA	2	NA	NA	2	NA	2046161	NA	13	16	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC38A5	23	48458537	48470256	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	15	0	FALSE	AMP (many states)	PASS
659_bTo_pair	SLC38A6	14	60981114	61083733	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC38A7	16	58665109	58685104	FALSE	972	-0.499158643645776	34	57931773	64947842	NA	2	NA	NA	2	NA	7016069	NA	18	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC38A8	16	84009667	84042636	FALSE	987	-0.578642888038652	23	81999201	85806436	0.186356639256811	1	0	0.186356639256811	1	0	3807235	1	31	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC38A9	5	55625845	55773194	FALSE	319	-0.764156631411702	19	50399919	56556187	0.365165917639896	1	0	0.365165917639896	1	0	6156268	1	28	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC39A1	1	153959099	153968184	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC39A10	2	195575977	195737702	FALSE	161	-0.46057869782823	30	190057617	197310624	1	2	1	1	2	1	7253007	1	23	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC39A11	17	72645949	73092712	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC39A12	10	17951839	18043292	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	14	1	FALSE	CNLOH	PASS
659_bTo_pair	SLC39A13	11	47407132	47416501	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC39A14	8	22367249	22434129	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	11	2	FALSE	HETLOSS	PASS
659_bTo_pair	SLC39A2	14	20999255	21001871	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	SLC39A3	19	2732204	2740152	FALSE	1120	-0.63588318052236	23	2233887	3062886	0.186356639256811	1	0	0.186356639256811	1	0	828999	1	28	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC39A4	8	144409742	144416895	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	SLC39A5	12	56230049	56237846	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC39A6	18	36108532	36129385	FALSE	1095	-0.699288883997088	20	33734323	36718652	0.365165917639896	1	0	0.365165917639896	1	0	2984329	1	17	13	3	FALSE	HETLOSS	PASS
659_bTo_pair	SLC39A7	6	33200445	33204439	FALSE	389	-0.565050845620731	23	33163789	33316917	0.186356639256811	1	0	0.186356639256811	1	0	153128	1	13	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC39A8	4	102251041	102431258	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	11	2	FALSE	DIPLOID	PASS
659_bTo_pair	SLC39A9	14	69398015	69462388	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	SLC3A1	2	44275458	44321494	FALSE	106	-0.392858868113437	39	42335725	46184779	NA	2	NA	NA	2	NA	3849054	NA	22	13	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC3A2	11	62856102	62888875	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	12	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	SLC40A1	2	189560579	189583758	FALSE	159	-0.50094907723407	34	185815441	189771912	NA	2	NA	NA	2	NA	3956471	NA	17	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC41A1	1	205789093	205813748	FALSE	68	-1.34518521733321	4	205718394	205797003	0.365165917639896	0	0	0.365165917639896	0	0	78609	0	3	12	1	TRUE	HOMDEL	PASS
659_bTo_pair	SLC41A2	12	104802553	104958744	FALSE	798	-0.492720037723834	34	102839233	105367537	NA	2	NA	NA	2	NA	2528304	NA	20	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC41A3	3	126006355	126101561	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	13	3	FALSE	GAIN	PASS
659_bTo_pair	SLC43A1	11	57484534	57515786	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	14	0	FALSE	GAIN	PASS
659_bTo_pair	SLC43A2	17	1569267	1628886	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC43A3	11	57406954	57427580	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	13	1	FALSE	GAIN	PASS
659_bTo_pair	SLC44A1	9	105244622	105439171	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC44A2	19	10602457	10644559	FALSE	1141	-0.578703281933348	26	10514217	10929669	NA	2	NA	NA	2	NA	415452	NA	14	21	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC44A3	1	94820342	94895246	FALSE	31	-0.34979279123772	43	94820443	100270584	0.192136715055622	3	NA	0.192136715055622	3	NA	5450141	NA	22	16	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SLC44A4	6	31863192	31879046	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	20	4	FALSE	HETLOSS	PASS
659_bTo_pair	SLC44A5	1	75202131	75611116	FALSE	25	-0.394411030612058	39	74026891	77942032	NA	2	NA	NA	2	NA	3915141	NA	22	25	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC45A1	1	8317826	8344167	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	SLC45A2	5	33944616	33984730	FALSE	312	-0.206081392785099	47	24487677	35857105	0.365165917639896	3	1	0.365165917639896	3	1	11369428	2	27	10	1	FALSE	GAIN	PASS
659_bTo_pair	SLC45A3	1	205657851	205680459	FALSE	67	1.60592155704916	93	205620128	205680199	0.364342740527346	19	NA	0.364342740527346	19	NA	60071	NA	2	71	12	FALSE	AMP	PASS
659_bTo_pair	SLC45A4	8	141207166	141308305	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	16	3	FALSE	DIPLOID	PASS
659_bTo_pair	SLC46A1	17	28394756	28407197	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC46A2	9	112878920	112890913	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC46A3	13	28700064	28718970	FALSE	828	-0.893717680890687	13	28659152	32311865	0.365165917639896	1	0	0.365165917639896	1	0	3652713	1	17	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC47A1	17	19495385	19579034	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	17	0	FALSE	CNLOH	PASS
659_bTo_pair	SLC47A2	17	19678288	19718979	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	19	4	FALSE	CNLOH	PASS
659_bTo_pair	SLC48A1	12	47753916	47782753	FALSE	766	-0.557616146966431	26	45922034	47968195	NA	2	NA	NA	2	NA	2046161	NA	13	6	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC49A3	4	681829	689441	FALSE	272	-0.300029378244858	40	85877	1745020	0.308149309490068	3	1	0.308149309490068	3	1	1659143	2	29	12	1	FALSE	GAIN	PASS
659_bTo_pair	SLC4A1	17	44248385	44268141	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	21	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC4A10	2	161424332	161985282	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	31	1	FALSE	DIPLOID	PASS
659_bTo_pair	SLC4A11	20	3227417	3239559	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	21	3	FALSE	HETLOSS	PASS
659_bTo_pair	SLC4A1AP	2	27663471	27694976	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC4A2	7	151057210	151076527	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	28	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC4A3	2	219627327	219641980	FALSE	177	-0.713780356009728	19	219579555	221572276	0.365165917639896	1	0	0.365165917639896	1	0	1992721	1	3	28	1	FALSE	HETLOSS	PASS
659_bTo_pair	SLC4A4	4	71062667	71572087	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	26	2	FALSE	DIPLOID	PASS
659_bTo_pair	SLC4A5	2	74216242	74343414	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	28	4	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC4A7	3	27372721	27484420	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	30	3	FALSE	HETLOSS	PASS
659_bTo_pair	SLC4A8	12	51391317	51515763	FALSE	772	-0.61197679162419	26	50109466	51920864	NA	2	NA	NA	2	NA	1811398	NA	27	26	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC4A9	5	140360202	140375143	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	24	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SLC50A1	1	155135344	155138857	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC51A	3	196211487	196243178	FALSE	271	-0.194588974812627	47	196198492	198169864	0.365165917639896	3	1	0.365165917639896	3	1	1971372	2	29	14	0	FALSE	GAIN	PASS
659_bTo_pair	SLC51B	15	65045370	65053396	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC52A1	17	5032600	5052009	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	SLC52A2	8	144354135	144361286	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	19	1	FALSE	DIPLOID	PASS
659_bTo_pair	SLC52A3	20	760080	776015	FALSE	1195	-0.60512265366003	23	87765	1537211	0.186356639256811	1	0	0.186356639256811	1	0	1449446	1	33	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	SLC5A1	22	32043032	32113029	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	16	1	FALSE	CNLOH	PASS
659_bTo_pair	SLC5A10	17	18950345	19022595	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	32	1	FALSE	CNLOH	PASS
659_bTo_pair	SLC5A11	16	24845841	24911628	FALSE	960	-0.449512584299377	34	23658521	27234165	NA	2	NA	NA	2	NA	3575644	NA	16	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC5A12	11	26667019	26723427	FALSE	689	-0.596895402665017	26	22674905	26692543	NA	2	NA	NA	2	NA	4017638	NA	7	16	3	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC5A2	16	31483002	31490860	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC5A3	21	34073570	34106262	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC5A4	22	32218476	32255341	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	15	1	FALSE	CNLOH	PASS
659_bTo_pair	SLC5A5	19	17871973	17895174	FALSE	1157	-0.332253297419471	43	17859980	18149705	0.192136715055622	3	NA	0.192136715055622	3	NA	289725	NA	7	16	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SLC5A6	2	27199587	27212958	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC5A7	2	107986523	108013994	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC5A8	12	101155493	101210407	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	SLC5A9	1	48222685	48248644	FALSE	16	-0.485631979032023	30	46175602	48453048	1	2	1	1	2	1	2277446	1	32	16	5	FALSE	DIPLOID	PASS
659_bTo_pair	SLC6A1	3	10992186	11039249	FALSE	199	-1.0441448018759	8	10200366	12187515	0.342391532111247	0	0	0.342391532111247	0	0	1987149	0	14	14	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SLC6A11	3	10816200	10940733	FALSE	199	-1.0441448018759	8	10200366	12187515	0.342391532111247	0	0	0.342391532111247	0	0	1987149	0	14	15	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SLC6A12	12	190077	214570	FALSE	735	-0.363502334794913	39	66864	260044	NA	2	NA	NA	2	NA	193180	NA	3	15	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC6A13	12	220621	262873	FALSE	735	-0.363502334794913	39	66864	260044	NA	2	NA	NA	2	NA	193180	NA	3	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC6A14	23	116436622	116461458	FALSE	1326	0.081501992784242	59	111246621	119452040	0.308533751035793	5	NA	0.308533751035793	5	NA	8205419	NA	28	16	0	FALSE	AMP (many states)	PASS
659_bTo_pair	SLC6A15	12	84859488	84913615	FALSE	793	-0.510041181295141	29	76355979	85286979	NA	2	NA	NA	2	NA	8931000	NA	22	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC6A16	19	49289638	49325225	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC6A17	1	110150486	110202202	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	16	3	FALSE	HETLOSS	PASS
659_bTo_pair	SLC6A18	5	1225355	1246189	FALSE	308	-0.255094097331532	44	92297	1246091	0.345317016959666	3	1	0.345317016959666	3	1	1153794	2	18	14	0	FALSE	GAIN	PASS
659_bTo_pair	SLC6A19	5	1201595	1225117	FALSE	308	-0.255094097331532	44	92297	1246091	0.345317016959666	3	1	0.345317016959666	3	1	1153794	2	18	15	2	FALSE	GAIN	PASS
659_bTo_pair	SLC6A2	16	55655604	55706192	FALSE	968	-0.505434692233225	30	51151209	56683230	1	2	1	1	2	1	5532021	1	34	17	1	FALSE	DIPLOID	PASS
659_bTo_pair	SLC6A20	3	45755450	45796535	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	12	3	FALSE	HETLOSS	PASS
659_bTo_pair	SLC6A3	5	1392790	1445430	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	16	0	FALSE	GAIN	PASS
659_bTo_pair	SLC6A4	17	30194319	30236002	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC6A5	11	20599400	20659285	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	18	3	FALSE	DIPLOID	PASS
659_bTo_pair	SLC6A6	3	14402576	14489349	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC6A7	5	150189957	150222788	FALSE	348	-0.944402178600545	11	150166869	150399003	0.289956079954009	0	0	0.289956079954009	0	0	232134	0	5	17	4	FALSE	HOMDEL	PASS
659_bTo_pair	SLC6A8	23	153688099	153696593	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	14	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	SLC6A9	1	43991500	44031467	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	24	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC7A1	13	29509410	29595688	FALSE	828	-0.893717680890687	13	28659152	32311865	0.365165917639896	1	0	0.365165917639896	1	0	3652713	1	17	14	1	FALSE	HETLOSS	PASS
659_bTo_pair	SLC7A10	19	33208664	33225850	FALSE	1165	-0.570153591761829	23	29923697	33225768	0.186356639256811	1	0	0.186356639256811	1	0	3302071	1	18	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC7A11	4	138164097	138242349	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC7A13	8	86214052	86321146	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	8	0	FALSE	GAIN	PASS
659_bTo_pair	SLC7A14	3	170459584	170586074	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	13	0	FALSE	GAIN	PASS
659_bTo_pair	SLC7A2	8	17497088	17570573	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	15	2	FALSE	HETLOSS	PASS
659_bTo_pair	SLC7A3	23	70925582	70931125	FALSE	1313	0.277003378144951	63	70925855	71111565	0.364342740527346	6	NA	0.364342740527346	6	NA	185710	NA	6	12	2	FALSE	AMP (many states)	PASS
659_bTo_pair	SLC7A4	22	21028718	21032840	FALSE	1246	-0.481954888210425	34	21001894	21693896	NA	2	NA	NA	2	NA	692002	NA	14	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC7A5	16	87830023	87869488	FALSE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLC7A6	16	68264516	68301823	FALSE	979	-0.429457644119204	34	67645299	68698317	NA	2	NA	NA	2	NA	1053018	NA	33	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC7A6OS	16	68284503	68310946	FALSE	979	-0.429457644119204	34	67645299	68698317	NA	2	NA	NA	2	NA	1053018	NA	33	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC7A7	14	22773222	22829820	FALSE	849	-0.198876830204613	48	21522824	22901846	0.365165917639896	3	NA	0.365165917639896	3	NA	1379022	NA	15	11	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SLC7A8	14	23125295	23183674	FALSE	850	-0.604709518345526	26	22902059	23302562	NA	2	NA	NA	2	NA	400503	NA	18	15	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC7A9	19	32830509	32869766	FALSE	1165	-0.570153591761829	23	29923697	33225768	0.186356639256811	1	0	0.186356639256811	1	0	3302071	1	18	13	4	FALSE	HETLOSS	PASS
659_bTo_pair	SLC8A1	2	40097270	40611053	FALSE	104	-0.491151156674762	34	39178660	42057603	NA	2	NA	NA	2	NA	2878943	NA	7	20	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC8A2	19	47428017	47472168	FALSE	1187	-0.64296711085636	26	47021158	48297657	NA	2	NA	NA	2	NA	1276499	NA	31	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC8A3	14	70044217	70189070	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC8B1	12	113298759	113359493	FALSE	806	-0.481242901669781	30	113099979	114403736	1	2	1	1	2	1	1303757	1	13	18	2	FALSE	DIPLOID	PASS
659_bTo_pair	SLC9A1	1	27098815	27166981	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	17	2	FALSE	DIPLOID	PASS
659_bTo_pair	SLC9A2	2	102619707	102711318	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC9A3	5	470458	524332	FALSE	308	-0.255094097331532	44	92297	1246091	0.345317016959666	3	1	0.345317016959666	3	1	1153794	2	18	21	0	FALSE	GAIN	PASS
659_bTo_pair	SLC9A3R1	17	74748652	74769353	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC9A3R2	16	2025356	2039026	FALSE	938	-0.541386594301884	29	1947002	2038739	NA	2	NA	NA	2	NA	91737	NA	11	12	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC9A4	2	102473303	102533972	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	SLC9A5	16	67237683	67272190	FALSE	976	-0.467350965811123	34	67110264	67538977	NA	2	NA	NA	2	NA	428713	NA	24	26	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SLC9A6	23	135973841	136047269	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	19	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	SLC9A7	23	46599252	46759172	FALSE	1292	0.0982305969328026	59	45151653	47144467	0.308533751035793	5	NA	0.308533751035793	5	NA	1992814	NA	9	19	0	FALSE	AMP (many states)	PASS
659_bTo_pair	SLC9A8	20	49812713	49892242	FALSE	1216	-0.465272765977354	30	47658376	50278257	1	2	1	1	2	1	2619881	1	18	17	2	FALSE	DIPLOID	PASS
659_bTo_pair	SLC9A9	3	143265222	143848531	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	16	0	FALSE	GAIN	PASS
659_bTo_pair	SLC9B1	4	102885048	103019739	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	13	5	FALSE	DIPLOID	PASS
659_bTo_pair	SLC9B2	4	103019868	103085829	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLC9C1	3	112140887	112294258	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	30	7	FALSE	GAIN	PASS
659_bTo_pair	SLC9C2	1	173500464	173603094	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	29	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLCO1A2	12	21264600	21419594	FALSE	755	-0.347739111320178	43	18683333	21462024	0.192136715055622	3	NA	0.192136715055622	3	NA	2778691	NA	14	18	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	SLCO1B1	12	21131202	21239246	FALSE	755	-0.347739111320178	43	18683333	21462024	0.192136715055622	3	NA	0.192136715055622	3	NA	2778691	NA	14	15	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SLCO1B3	12	20810702	20916911	FALSE	755	-0.347739111320178	43	18683333	21462024	0.192136715055622	3	NA	0.192136715055622	3	NA	2778691	NA	14	15	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	SLCO1B7	12	20962768	21092745	FALSE	755	-0.347739111320178	43	18683333	21462024	0.192136715055622	3	NA	0.192136715055622	3	NA	2778691	NA	14	13	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SLCO1C1	12	20695355	20753386	FALSE	755	-0.347739111320178	43	18683333	21462024	0.192136715055622	3	NA	0.192136715055622	3	NA	2778691	NA	14	17	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SLCO2A1	3	133928145	134052184	FALSE	242	-0.32037413513609	40	130560427	134790274	0.308149309490068	3	1	0.308149309490068	3	1	4229847	2	29	17	1	FALSE	GAIN	PASS
659_bTo_pair	SLCO2B1	11	75100563	75206549	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	16	2	FALSE	GAIN	PASS
659_bTo_pair	SLCO3A1	15	91853695	92172435	FALSE	929	-0.700679172673924	22	90876261	92655591	0.291335969972972	1	0	0.291335969972972	1	0	1779330	1	13	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLCO4A1	20	62642445	62685785	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLCO4C1	5	102233986	102296549	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLCO5A1	8	69667047	69835064	FALSE	553	-0.248188717260806	46	68331252	73878866	0.298322295679939	3	NA	0.298322295679939	3	NA	5547614	NA	20	14	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SLCO6A1	5	102371782	102499016	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	14	1	FALSE	HETLOSS	PASS
659_bTo_pair	SLF1	5	94618347	94739436	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	28	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLF2	10	100912569	100965136	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	28	0	FALSE	CNLOH	PASS
659_bTo_pair	SLFN11	17	35350305	35373701	TRUE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	13	0	FALSE	HOMDEL	RESCUE
659_bTo_pair	SLFN12	17	35411060	35433283	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	9	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SLFN12L	17	35464249	35537861	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	10	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SLFN13	17	35435096	35448837	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	13	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SLFN14	17	35548125	35558098	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	14	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SLFN5	17	35243036	35273655	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	14	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SLFNL1	1	41015597	41023237	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLIRP	14	77708071	77761104	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLIT1	10	96998038	97185920	FALSE	664	-0.371799025630062	36	96955124	97864220	0.365165917639896	2	0	0.365165917639896	2	0	909096	2	23	42	0	FALSE	CNLOH	PASS
659_bTo_pair	SLIT2	4	20253260	20620561	FALSE	277	0.271123815908725	63	17633730	20704492	0.364342740527346	6	NA	0.364342740527346	6	NA	3070762	NA	7	49	2	FALSE	AMP (many states)	PASS
659_bTo_pair	SLIT3	5	168661733	169301129	FALSE	356	-0.773912908266316	17	162095550	171298806	0.365165917639896	1	0	0.365165917639896	1	0	9203256	1	21	40	3	FALSE	HETLOSS	PASS
659_bTo_pair	SLITRK1	13	83877205	83882393	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	9	0	FALSE	CNLOH	PASS
659_bTo_pair	SLITRK2	23	145817832	145829856	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	12	2	FALSE	INDETERMINATE	PASS
659_bTo_pair	SLITRK3	3	165186720	165197109	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	12	0	FALSE	GAIN	PASS
659_bTo_pair	SLITRK4	23	143622790	143635777	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	10	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	SLITRK5	13	87672615	87696272	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	11	0	FALSE	CNLOH	PASS
659_bTo_pair	SLITRK6	13	85792787	85806683	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	11	0	FALSE	CNLOH	PASS
659_bTo_pair	SLK	10	103967201	104029233	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	24	1	FALSE	CNLOH	PASS
659_bTo_pair	SLMAP	3	57755450	57929168	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	25	1	FALSE	HETLOSS	PASS
659_bTo_pair	SLN	11	107707378	107719693	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	1	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLPI	20	45252239	45254564	FALSE	1211	-0.249905145449482	46	45110461	45330545	0.298322295679939	3	NA	0.298322295679939	3	NA	220084	NA	9	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SLTM	15	58879045	58933653	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	23	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLU7	5	160401641	160421711	FALSE	353	-0.698571741790457	22	157138801	161546576	0.291335969972972	1	0	0.291335969972972	1	0	4407775	1	29	15	2	FALSE	HETLOSS	PASS
659_bTo_pair	SLURP1	8	142740944	142742411	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLURP2	8	142764338	142769844	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLX1A	16	30193887	30197561	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	SLX1B	16	29454501	29458219	FALSE	965	-0.735005669796309	19	28989573	29982749	0.365165917639896	1	0	0.365165917639896	1	0	993176	1	25	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	SLX4	16	3581181	3611598	TRUE	945	1.68058857380658	96	3576222	3610947	0.364342740527346	21	NA	0.364342740527346	21	NA	34725	NA	2	37	0	FALSE	AMP	PASS
659_bTo_pair	SLX4IP	20	10435303	10636829	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	SMAD1	4	145481194	145558079	FALSE	300	-0.423460920061428	34	143186078	151174790	NA	2	NA	NA	2	NA	7988712	NA	32	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SMAD2	18	47808957	47931146	TRUE	1101	2.00689409566242	104	47809020	47835563	0.364342740527346	27	NA	0.364342740527346	27	NA	26543	NA	1	126	13	TRUE	AMP	PASS
659_bTo_pair	SMAD3	15	67063763	67195195	TRUE	911	1.86449889847255	100	66781211	67200256	0.364342740527346	24	NA	0.364342740527346	24	NA	419045	NA	2	45	10	FALSE	AMP	PASS
659_bTo_pair	SMAD4	18	51028394	51085045	TRUE	1104	0.400415307174904	66	51028378	52340795	0.364342740527346	6	NA	0.364342740527346	6	NA	1312417	NA	4	26	0	FALSE	AMP (many states)	PASS
659_bTo_pair	SMAD5	5	136132845	136188747	FALSE	336	-0.752536733071469	19	135941639	138575278	0.365165917639896	1	0	0.365165917639896	1	0	2633639	1	24	10	2	FALSE	HETLOSS	PASS
659_bTo_pair	SMAD6	15	66702228	66782848	FALSE	910	-0.956752978196304	11	66494510	66716498	0.289956079954009	0	0	0.289956079954009	0	0	221988	0	5	8	3	TRUE	HOMDEL	PASS
659_bTo_pair	SMAD7	18	48919853	48952052	FALSE	1103	-0.712987700962632	19	48029643	51023578	0.365165917639896	1	0	0.365165917639896	1	0	2993935	1	20	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	SMAD9	13	36844831	36920765	FALSE	830	-0.745621963362667	19	32401848	39788354	0.365165917639896	1	0	0.365165917639896	1	0	7386506	1	30	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	SMAGP	12	51244558	51270890	FALSE	772	-0.61197679162419	26	50109466	51920864	NA	2	NA	NA	2	NA	1811398	NA	27	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SMAP1	6	70667776	70862015	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	16	3	FALSE	DIPLOID	PASS
659_bTo_pair	SMAP2	1	40344850	40423326	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	13	2	FALSE	DIPLOID	PASS
659_bTo_pair	SMARCA1	23	129446501	129523500	FALSE	1333	-0.260466887002759	46	126819804	129920771	0.298322295679939	3	NA	0.298322295679939	3	NA	3100967	NA	9	25	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SMARCA2	9	1980290	2193624	TRUE	571	1.58588351408713	93	1975395	2048006	0.364342740527346	19	NA	0.364342740527346	19	NA	72611	NA	1	86	7	TRUE	AMP	PASS
659_bTo_pair	SMARCA4	19	10960825	11079426	TRUE	1142	1.34445136265369	87	10960884	11079088	0.364342740527346	16	NA	0.364342740527346	16	NA	118204	NA	1	64	5	FALSE	AMP	PASS
659_bTo_pair	SMARCA5	4	143513463	143557486	FALSE	300	-0.423460920061428	34	143186078	151174790	NA	2	NA	NA	2	NA	7988712	NA	32	25	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SMARCAD1	4	94207611	94291292	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	24	0	FALSE	DIPLOID	PASS
659_bTo_pair	SMARCAL1	2	216412414	216483053	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	SMARCB1	22	23786931	23838008	TRUE	1253	1.07529412333471	81	23780478	23837898	0.364342740527346	12	NA	0.364342740527346	12	NA	57420	NA	3	31	4	FALSE	AMP	PASS
659_bTo_pair	SMARCC1	3	47585272	47782106	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	28	0	FALSE	HETLOSS	PASS
659_bTo_pair	SMARCC2	12	56162983	56189567	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	32	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SMARCD1	12	50084972	50100712	FALSE	771	0.790237382667226	75	50085248	50108077	0.364342740527346	10	NA	0.364342740527346	10	NA	22829	NA	2	20	1	FALSE	AMP	PASS
659_bTo_pair	SMARCD2	17	63832081	63843065	FALSE	1064	-0.419094292936043	39	61867575	63873599	NA	2	NA	NA	2	NA	2006024	NA	24	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SMARCD3	7	151238764	151277896	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	SMARCE1	17	40624962	40648864	TRUE	1033	1.57926160783251	91	40624994	40656553	0.364342740527346	19	NA	0.364342740527346	19	NA	31559	NA	3	56	0	FALSE	AMP	PASS
659_bTo_pair	SMC1A	23	53374149	53422728	TRUE	1302	2.58849784052379	115	53374390	53422716	0.364342740527346	42	NA	0.364342740527346	42	NA	48326	NA	2	52	0	FALSE	AMP	PASS
659_bTo_pair	SMC1B	22	45344063	45413619	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	26	5	FALSE	CNLOH	PASS
659_bTo_pair	SMC2	9	104094260	104141417	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	26	0	FALSE	DIPLOID	PASS
659_bTo_pair	SMC3	10	110567691	110604636	TRUE	670	1.04757741405252	81	110567756	110781819	0.364342740527346	12	NA	0.364342740527346	12	NA	214063	NA	2	39	4	FALSE	AMP	PASS
659_bTo_pair	SMC4	3	160399274	160434962	FALSE	250	-0.231905273142314	46	156829339	161250770	0.298322295679939	3	NA	0.298322295679939	3	NA	4421431	NA	26	26	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	SMC5	9	70258962	70354888	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	27	1	FALSE	DIPLOID	PASS
659_bTo_pair	SMC6	2	17663812	17800242	FALSE	93	-0.378491391859888	39	15947306	17745967	NA	2	NA	NA	2	NA	1798661	NA	4	66	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	SMCHD1	18	2655738	2805017	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	49	4	FALSE	GAIN	PASS
659_bTo_pair	SMCO1	3	196506877	196515366	FALSE	271	-0.194588974812627	47	196198492	198169864	0.365165917639896	3	1	0.365165917639896	3	1	1971372	2	29	4	0	FALSE	GAIN	PASS
659_bTo_pair	SMCO2	12	27466810	27502185	FALSE	759	-0.427669886187443	30	25503824	31088026	1	2	1	1	2	1	5584202	1	28	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	SMCO3	12	14804650	14814182	FALSE	753	-0.517160615058114	27	12726042	18242949	1	2	1	1	2	1	5516907	1	31	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	SMCO4	11	93478472	93543508	FALSE	715	-0.44311716102168	34	90214063	94410681	NA	2	NA	NA	2	NA	4196618	NA	16	1	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SMCP	1	152878317	152885047	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	SMCR8	17	18315310	18328055	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	12	0	FALSE	CNLOH	PASS
659_bTo_pair	SMDT1	22	42079691	42084284	FALSE	1269	-0.443951758803067	34	41205309	42514754	NA	2	NA	NA	2	NA	1309445	NA	31	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SMG1	16	18804853	18926454	TRUE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	72	0	FALSE	DIPLOID	PASS
659_bTo_pair	SMG5	1	156249224	156282825	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	24	0	FALSE	DIPLOID	PASS
659_bTo_pair	SMG6	17	2059839	2303771	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	27	0	FALSE	HETLOSS	PASS
659_bTo_pair	SMG7	1	183472216	183598246	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	43	0	FALSE	DIPLOID	PASS
659_bTo_pair	SMG8	17	59209400	59215247	FALSE	1058	-0.423419268198233	34	58422367	59890994	NA	2	NA	NA	2	NA	1468627	NA	20	13	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SMG9	19	43727992	43754990	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	SMIM1	1	3772761	3775982	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	SMIM10	23	134990938	134992473	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	1	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SMIM10L1	12	11171222	11176016	FALSE	748	0.115902835270215	57	10722867	11717834	0.334914946507217	5	2	0.334914946507217	5	2	994967	3	26	2	1	FALSE	AMP	PASS
659_bTo_pair	SMIM10L2A	23	135421943	135428074	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	1	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SMIM10L2B	23	135094987	135098634	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	1	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SMIM12	1	34712737	34859816	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	SMIM13	6	11094033	11138733	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	SMIM14	4	39546330	39639090	FALSE	280	-0.191477557443324	47	38829296	41740154	0.365165917639896	3	1	0.365165917639896	3	1	2910858	2	22	4	0	FALSE	GAIN	PASS
659_bTo_pair	SMIM15	5	61157709	61162474	FALSE	323	-0.645106866010582	25	58495036	67196614	0.365165917639896	1	0	0.365165917639896	1	0	8701578	1	31	1	1	FALSE	HETLOSS	PASS
659_bTo_pair	SMIM17	19	56643145	56655766	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	3	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SMIM18	8	30638600	30646064	FALSE	524	-0.752404429217175	19	29337070	31032666	0.365165917639896	1	0	0.365165917639896	1	0	1695596	1	13	1	0	FALSE	HETLOSS	PASS
659_bTo_pair	SMIM19	8	42541155	42555193	FALSE	541	-0.815492706726597	16	42338595	47735321	0.365165917639896	1	0	0.365165917639896	1	0	5396726	1	15	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	SMIM2	13	44143543	44161257	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	SMIM20	4	25861830	25929874	FALSE	278	-0.217595572850614	44	20704713	38137253	0.345317016959666	3	1	0.345317016959666	3	1	17432540	2	29	5	0	FALSE	GAIN	PASS
659_bTo_pair	SMIM21	18	75409476	75427703	FALSE	1113	-0.883471952658051	12	75410842	80247341	0.365165917639896	1	0	0.365165917639896	1	0	4836499	1	17	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	SMIM22	16	4788397	4796491	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	SMIM23	5	171782432	171796126	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	SMIM24	19	3473986	3480542	FALSE	1122	-0.653400653967241	21	3157829	4037863	0.140309795179477	0	0	0.140309795179477	0	0	880034	0	27	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SMIM26	20	18567347	18569563	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	SMIM27	9	32551144	32568621	FALSE	585	-0.464842894155678	32	22447079	32572950	0.365165917639896	2	0	0.365165917639896	2	0	10125871	2	19	4	0	FALSE	CNLOH	PASS
659_bTo_pair	SMIM29	6	34246380	34249470	FALSE	391	-0.499783837646083	34	33391964	35241176	NA	2	NA	NA	2	NA	1849212	NA	26	4	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SMIM3	5	150777946	150796734	FALSE	350	-0.819899512516675	16	150444373	153997804	0.365165917639896	1	0	0.365165917639896	1	0	3553431	1	25	1	0	FALSE	HETLOSS	PASS
659_bTo_pair	SMIM30	7	113116718	113118613	FALSE	488	-0.464127371400283	34	107070260	116559206	NA	2	NA	NA	2	NA	9488946	NA	33	1	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SMIM31	4	164754064	164803795	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	2	1	FALSE	HETLOSS	PASS
659_bTo_pair	SMIM32	5	136191468	136193134	FALSE	336	-0.752536733071469	19	135941639	138575278	0.365165917639896	1	0	0.365165917639896	1	0	2633639	1	24	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	SMIM35	11	118003634	118088299	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	SMIM4	3	52534013	52579237	FALSE	224	-0.84777820586227	13	52412877	52540527	0.365165917639896	1	0	0.365165917639896	1	0	127650	1	7	24	2	TRUE	HETLOSS	PASS
659_bTo_pair	SMIM5	17	75633434	75641404	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	SMIM6	17	75646243	75647977	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	SMIM7	19	16630751	16660442	FALSE	1154	-0.533888138892061	27	16361883	17271664	1	2	1	1	2	1	909781	1	23	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	SMIM8	6	87322583	87399749	FALSE	407	-0.739487270214454	18	87337082	88963417	0.180216333675297	0	0	0.180216333675297	0	0	1626335	0	11	9	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SMIM9	23	154823348	154834662	FALSE	1341	-0.0231097163941018	55	154552015	155545250	0.328696605851359	4	NA	0.328696605851359	4	NA	993235	NA	23	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SMKR1	7	129502479	129512932	FALSE	494	-0.536776174448359	29	129225418	130685270	NA	2	NA	NA	2	NA	1459852	NA	17	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SMLR1	6	130827406	130837135	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	SMN1	5	70925030	70953942	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	SMN2	5	70049612	70078522	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	SMNDC1	10	110290730	110304951	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	5	0	FALSE	CNLOH	PASS
659_bTo_pair	SMO	7	129188872	129213545	FALSE	493	1.58426434903535	93	129167447	129225099	0.364342740527346	19	NA	0.364342740527346	19	NA	57652	NA	3	22	2	FALSE	AMP	PASS
659_bTo_pair	SMOC1	14	69854131	70032366	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	12	3	FALSE	DIPLOID	PASS
659_bTo_pair	SMOC2	6	168441151	168673445	FALSE	449	-0.520973998932362	27	167374374	170584540	1	2	1	1	2	1	3210166	1	18	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	SMOX	20	4120980	4187747	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	SMPD1	11	6390431	6394998	FALSE	682	-0.308581000695747	43	6240079	6614875	0.192136715055622	3	NA	0.192136715055622	3	NA	374796	NA	15	11	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SMPD2	6	109440763	109443919	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	SMPD3	16	68358325	68448688	FALSE	979	-0.429457644119204	34	67645299	68698317	NA	2	NA	NA	2	NA	1053018	NA	33	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SMPD4	2	130151392	130182750	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	25	3	FALSE	DIPLOID	PASS
659_bTo_pair	SMPDL3A	6	122789049	122809720	FALSE	421	-0.534093125771784	29	117482879	126348569	NA	2	NA	NA	2	NA	8865690	NA	29	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SMPDL3B	1	27934993	27959157	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	SMPX	23	21705972	21758163	FALSE	1278	-0.021616497728569	55	20155391	23935235	0.328696605851359	4	NA	0.328696605851359	4	NA	3779844	NA	16	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SMR3A	4	70360761	70367158	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	SMR3B	4	70370093	70390244	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	SMS	23	21940573	21994835	FALSE	1278	-0.021616497728569	55	20155391	23935235	0.328696605851359	4	NA	0.328696605851359	4	NA	3779844	NA	16	11	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SMTN	22	31064105	31104757	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	25	0	FALSE	CNLOH	PASS
659_bTo_pair	SMTNL1	11	57542641	57550274	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	10	0	FALSE	GAIN	PASS
659_bTo_pair	SMTNL2	17	4583999	4608319	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	11	2	FALSE	HETLOSS	PASS
659_bTo_pair	SMU1	9	33041764	33076659	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	12	0	FALSE	CNLOH	PASS
659_bTo_pair	SMUG1	12	54121277	54189008	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	SMURF1	7	99027438	99144100	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	20	1	FALSE	HETLOSS	PASS
659_bTo_pair	SMURF2	17	64542295	64662068	FALSE	1066	-0.447707994366894	34	63941413	64859452	NA	2	NA	NA	2	NA	918039	NA	12	18	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SMYD1	2	88067780	88113387	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	10	2	FALSE	DIPLOID	PASS
659_bTo_pair	SMYD2	1	214281102	214337131	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	SMYD3	1	245749342	246507312	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	SMYD4	17	1779485	1830634	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	15	2	FALSE	HETLOSS	PASS
659_bTo_pair	SMYD5	2	73214222	73227237	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	SNAI1	20	49982999	49988886	FALSE	1216	-0.465272765977354	30	47658376	50278257	1	2	1	1	2	1	2619881	1	18	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	SNAI2	8	48917604	48921740	FALSE	543	-0.403572692824667	39	47962754	54147613	NA	2	NA	NA	2	NA	6184859	NA	18	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SNAI3	16	88677682	88686493	FALSE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	SNAP23	15	42491233	42545356	FALSE	898	-0.892191685906218	12	42081573	42681446	0.365165917639896	1	0	0.365165917639896	1	0	599873	1	13	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	SNAP25	20	10218830	10307418	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	SNAP29	22	20858983	20891218	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	6	0	FALSE	CNLOH	PASS
659_bTo_pair	SNAP47	1	227728539	227781231	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	18	1	FALSE	HETLOSS	PASS
659_bTo_pair	SNAP91	6	83552880	83709691	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	30	0	FALSE	DIPLOID	PASS
659_bTo_pair	SNAPC1	14	61762357	61796428	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	SNAPC2	19	7920316	7923250	FALSE	1132	-0.583194501817822	26	7916513	8843246	NA	2	NA	NA	2	NA	926733	NA	25	6	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SNAPC3	9	15422704	15465953	FALSE	581	-0.746183084602222	19	10618009	19786745	0.365165917639896	1	0	0.365165917639896	1	0	9168736	1	24	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	SNAPC4	9	136375577	136400168	FALSE	629	-0.955558414525678	9	134750808	136485014	0.291955377254426	0	0	0.291955377254426	0	0	1734206	0	30	30	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SNAPC5	15	66490135	66497813	FALSE	909	1.03264997998535	81	66386896	66491669	0.364342740527346	12	NA	0.364342740527346	12	NA	104773	NA	2	8	0	TRUE	AMP	PASS
659_bTo_pair	SNAPIN	1	153658654	153661830	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	SNCA	4	89724099	89838315	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	SNCAIP	5	122311354	122464219	FALSE	332	0.458116582973227	66	122076938	122775147	0.364342740527346	7	NA	0.364342740527346	7	NA	698209	NA	5	26	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	SNCB	5	176620084	176630556	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	SNCG	10	86958618	86963260	FALSE	656	-0.313191165123093	43	86936767	87862427	0.192136715055622	3	NA	0.192136715055622	3	NA	925660	NA	12	6	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	SND1	7	127652180	128092609	FALSE	492	-0.463656181520944	30	126439208	129166764	1	2	1	1	2	1	2727556	1	27	33	1	FALSE	DIPLOID	PASS
659_bTo_pair	SNED1	2	240998838	241095568	FALSE	194	-0.588828356865968	23	240025214	241817025	0.186356639256811	1	0	0.186356639256811	1	0	1791811	1	34	40	3	FALSE	HETLOSS	PASS
659_bTo_pair	SNF8	17	48929316	48945117	FALSE	1051	-0.636429062465303	26	48785033	49576193	NA	2	NA	NA	2	NA	791160	NA	15	9	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SNHG28	1	159834474	159873053	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	SNIP1	1	37534449	37554344	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	SNN	16	11668414	11679159	FALSE	954	-0.618769947650953	26	11345676	11941160	NA	2	NA	NA	2	NA	595484	NA	9	2	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SNORC	2	232857270	232878708	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	SNPH	20	1266280	1309328	FALSE	1195	-0.60512265366003	23	87765	1537211	0.186356639256811	1	0	0.186356639256811	1	0	1449446	1	33	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	SNRK	3	43286512	43424764	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	SNRNP200	2	96274336	96305515	FALSE	128	-0.534748403488722	29	96267335	97158701	NA	2	NA	NA	2	NA	891366	NA	17	47	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SNRNP25	16	53010	57669	FALSE	934	-0.725703643263354	19	47610	287124	0.365165917639896	1	0	0.365165917639896	1	0	239514	1	16	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	SNRNP27	2	69893560	69905575	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	SNRNP35	12	123457641	123473154	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	SNRNP40	1	31259568	31296782	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	10	2	FALSE	DIPLOID	PASS
659_bTo_pair	SNRNP48	6	7590199	7611967	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	SNRNP70	19	49085419	49108605	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	SNRPA	19	40750637	40765389	FALSE	1173	-0.760690164248215	19	40322104	40807873	0.365165917639896	1	0	0.365165917639896	1	0	485769	1	21	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	SNRPA1	15	101281510	101295282	FALSE	933	-0.918772702357227	12	98968746	101922991	0.365165917639896	1	0	0.365165917639896	1	0	2954245	1	21	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	SNRPB	20	2461634	2470853	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	SNRPB2	20	16729961	16742563	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	SNRPC	6	34757406	34773794	FALSE	391	-0.499783837646083	34	33391964	35241176	NA	2	NA	NA	2	NA	1849212	NA	26	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SNRPD1	18	21612267	21633524	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	4	0	FALSE	GAIN	PASS
659_bTo_pair	SNRPD2	19	45687454	45692569	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	3	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SNRPD3	22	24555503	24609980	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	11	0	FALSE	CNLOH	PASS
659_bTo_pair	SNRPE	1	203861603	203870550	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	SNRPF	12	95858928	95903828	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	15	3	FALSE	DIPLOID	PASS
659_bTo_pair	SNRPG	2	70281362	70293771	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	SNRPN	15	24823637	24978723	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	SNTA1	20	33407955	33443892	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	SNTB1	8	120535745	120813273	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	9	1	FALSE	GAIN	PASS
659_bTo_pair	SNTB2	16	69187129	69309052	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SNTG1	8	49909789	50796691	FALSE	543	-0.403572692824667	39	47962754	54147613	NA	2	NA	NA	2	NA	6184859	NA	18	17	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SNTG2	2	950868	1367613	FALSE	89	-0.524158836377085	27	41620	3847167	1	2	1	1	2	1	3805547	1	18	17	1	FALSE	DIPLOID	PASS
659_bTo_pair	SNTN	3	63652668	63679020	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	SNU13	22	41673930	41690504	FALSE	1269	-0.443951758803067	34	41205309	42514754	NA	2	NA	NA	2	NA	1309445	NA	31	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SNUPN	15	75598083	75626469	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	SNURF	15	24954986	24977850	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	SNW1	14	77717599	77761207	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	SNX1	15	64094123	64146090	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	SNX10	7	26291895	26374329	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	8	0	FALSE	GAIN	PASS
659_bTo_pair	SNX11	17	48103357	48123074	FALSE	1049	-0.703360644300681	22	47810585	48529853	0.291335969972972	1	0	0.291335969972972	1	0	719268	1	15	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	SNX12	23	71056332	71073426	FALSE	1313	0.277003378144951	63	70925855	71111565	0.364342740527346	6	NA	0.364342740527346	6	NA	185710	NA	6	4	1	FALSE	AMP (many states)	PASS
659_bTo_pair	SNX13	7	17790761	17940501	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	29	0	FALSE	GAIN	PASS
659_bTo_pair	SNX14	6	85505496	85594156	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	31	0	FALSE	DIPLOID	PASS
659_bTo_pair	SNX15	11	65027408	65040572	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	8	0	FALSE	GAIN	PASS
659_bTo_pair	SNX16	8	81799581	81842866	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	8	0	FALSE	GAIN	PASS
659_bTo_pair	SNX17	2	27370496	27377533	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	SNX18	5	54517759	54546585	FALSE	319	-0.764156631411702	19	50399919	56556187	0.365165917639896	1	0	0.365165917639896	1	0	6156268	1	28	10	3	FALSE	HETLOSS	PASS
659_bTo_pair	SNX19	11	130875436	130916509	FALSE	734	-0.516486951202814	27	128842412	134387591	1	2	1	1	2	1	5545179	1	27	20	5	FALSE	DIPLOID	PASS
659_bTo_pair	SNX2	5	122774996	122830108	FALSE	332	0.458116582973227	66	122076938	122775147	0.364342740527346	7	NA	0.364342740527346	7	NA	698209	NA	5	16	1	TRUE	INDETERMINATE	PASS
659_bTo_pair	SNX20	16	50666300	50681353	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	SNX21	20	45833810	45843275	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	SNX22	15	64151715	64157481	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	SNX24	5	122843439	123029354	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	SNX25	4	185204237	185370185	FALSE	305	-0.853036814117495	12	184629284	186555336	0.365165917639896	1	0	0.365165917639896	1	0	1926052	1	22	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	SNX27	1	151612006	151699091	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	SNX29	16	11976737	12574289	FALSE	956	-0.605095519339522	26	11976781	13235390	NA	2	NA	NA	2	NA	1258609	NA	3	23	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SNX3	6	108211222	108261260	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	SNX30	9	112750838	112881671	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	SNX31	8	100572882	100663415	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	14	2	FALSE	GAIN	PASS
659_bTo_pair	SNX32	11	65833641	65856896	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	16	0	FALSE	GAIN	PASS
659_bTo_pair	SNX33	15	75647906	75662301	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	SNX4	3	125446644	125520197	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	14	0	FALSE	GAIN	PASS
659_bTo_pair	SNX5	20	17941597	17968980	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	SNX6	14	34561094	34630183	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	SNX7	1	98661701	98760500	FALSE	31	-0.34979279123772	43	94820443	100270584	0.192136715055622	3	NA	0.192136715055622	3	NA	5450141	NA	22	10	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SNX8	7	2251770	2354318	FALSE	450	-0.329551508654045	40	193185	2379492	0.308149309490068	3	1	0.308149309490068	3	1	2186307	2	26	12	0	FALSE	GAIN	PASS
659_bTo_pair	SNX9	6	157700387	157945077	FALSE	442	-0.485239870020868	34	157293045	158767513	NA	2	NA	NA	2	NA	1474468	NA	11	18	4	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SOAT1	1	179293714	179358680	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	16	3	FALSE	DIPLOID	PASS
659_bTo_pair	SOAT2	12	53103518	53124538	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	16	4	FALSE	DIPLOID	PASS
659_bTo_pair	SOBP	6	107489958	107660167	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	SOCS1	16	11254405	11256200	TRUE	953	0.745805771431006	74	11178388	11281274	0.364342740527346	9	NA	0.364342740527346	9	NA	102886	NA	7	6	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	SOCS2	12	93569814	93583487	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	SOCS3	17	78356778	78360077	FALSE	1080	-0.537824093701074	27	76741010	78870935	1	2	1	1	2	1	2129925	1	20	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	SOCS4	14	55027230	55049488	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	SOCS5	2	46698952	46780245	FALSE	108	-0.751130758275331	19	46479657	47176488	0.365165917639896	1	0	0.365165917639896	1	0	696831	1	11	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	SOCS6	18	70288901	70330200	FALSE	1111	-0.872352968035647	12	63331800	74584528	0.365165917639896	1	0	0.365165917639896	1	0	11252728	1	31	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	SOCS7	17	38352228	38405593	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	12	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SOD1	21	31659622	31668931	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	SOD2	6	159669057	159762529	FALSE	444	-0.505238631103688	30	158776425	160753038	1	2	1	1	2	1	1976613	1	17	17	1	FALSE	DIPLOID	PASS
659_bTo_pair	SOD3	4	24789912	24800842	FALSE	278	-0.217595572850614	44	20704713	38137253	0.345317016959666	3	1	0.345317016959666	3	1	17432540	2	29	3	0	FALSE	GAIN	PASS
659_bTo_pair	SOGA1	20	36777442	36863686	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	27	0	FALSE	DIPLOID	PASS
659_bTo_pair	SOGA3	6	127472794	127519191	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	15	2	FALSE	DIPLOID	PASS
659_bTo_pair	SOHLH1	9	135693407	135699528	FALSE	629	-0.955558414525678	9	134750808	136485014	0.291955377254426	0	0	0.291955377254426	0	0	1734206	0	30	11	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SOHLH2	13	36168208	36214615	FALSE	830	-0.745621963362667	19	32401848	39788354	0.365165917639896	1	0	0.365165917639896	1	0	7386506	1	30	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	SON	21	33542618	33577481	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	36	0	FALSE	DIPLOID	PASS
659_bTo_pair	SORBS1	10	95311771	95561414	FALSE	663	-0.556688707084635	24	94775074	96952170	0.359751661895656	2	0	0.359751661895656	2	0	2177096	2	21	35	3	FALSE	CNLOH	PASS
659_bTo_pair	SORBS2	4	185585444	185956652	FALSE	305	-0.853036814117495	12	184629284	186555336	0.365165917639896	1	0	0.365165917639896	1	0	1926052	1	22	33	2	FALSE	HETLOSS	PASS
659_bTo_pair	SORBS3	8	22544986	22575788	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	SORCS1	10	106573663	107164534	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	30	3	FALSE	CNLOH	PASS
659_bTo_pair	SORCS2	4	7192538	7742836	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	36	1	FALSE	GAIN	PASS
659_bTo_pair	SORCS3	10	104641101	105265235	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	30	0	FALSE	CNLOH	PASS
659_bTo_pair	SORD	15	45023104	45077185	FALSE	904	-0.666047806656427	20	44736698	49422632	0.365165917639896	1	0	0.365165917639896	1	0	4685934	1	30	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	SORL1	11	121452203	121633693	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	50	0	FALSE	DIPLOID	PASS
659_bTo_pair	SORT1	1	109309568	109397951	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	SOS1	2	38981396	39124345	FALSE	103	1.34044093965019	87	38962337	39121003	0.364342740527346	16	NA	0.364342740527346	16	NA	158666	NA	2	57	9	FALSE	AMP	PASS
659_bTo_pair	SOS2	14	50117120	50231558	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	29	0	FALSE	DIPLOID	PASS
659_bTo_pair	SOST	17	43753731	43758788	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SOSTDC1	7	16461481	16530580	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	4	0	FALSE	GAIN	PASS
659_bTo_pair	SOWAHA	5	132813587	132816797	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	SOWAHB	4	76894928	76898147	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	10	2	FALSE	DIPLOID	PASS
659_bTo_pair	SOWAHC	2	109614334	109618990	FALSE	134	-0.415117895462051	39	108786846	111117811	NA	2	NA	NA	2	NA	2330965	NA	16	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SOWAHD	23	119758613	119760164	FALSE	1328	0.070674287613007	59	119603543	121049335	0.308533751035793	5	NA	0.308533751035793	5	NA	1445792	NA	34	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	SOX1	13	112067647	112070488	FALSE	844	-0.576217954819194	24	110150427	113263496	0.359751661895656	2	0	0.359751661895656	2	0	3113069	2	19	4	0	FALSE	CNLOH	PASS
659_bTo_pair	SOX10	22	37970686	37987422	FALSE	1264	2.09522824624576	105	37970942	37987420	0.364342740527346	29	NA	0.364342740527346	29	NA	16478	NA	2	22	3	FALSE	AMP	PASS
659_bTo_pair	SOX11	2	5692667	5701385	FALSE	90	2.30135992055277	110	5692647	5701260	0.364342740527346	34	NA	0.364342740527346	34	NA	8613	NA	1	33	3	FALSE	AMP	PASS
659_bTo_pair	SOX12	20	325595	330224	FALSE	1195	-0.60512265366003	23	87765	1537211	0.186356639256811	1	0	0.186356639256811	1	0	1449446	1	33	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	SOX13	1	204073115	204127743	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	SOX14	3	137764284	137766338	FALSE	244	-0.465451876797886	34	136855703	138629155	NA	2	NA	NA	2	NA	1773452	NA	14	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SOX15	17	7588178	7590170	FALSE	1000	-0.750226164220686	19	7324407	7655594	0.365165917639896	1	0	0.365165917639896	1	0	331187	1	31	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	SOX17	8	54457935	54460888	TRUE	544	2.25064966810332	109	54453014	54461327	0.364342740527346	32	NA	0.364342740527346	32	NA	8313	NA	1	11	0	FALSE	AMP	PASS
659_bTo_pair	SOX18	20	64047582	64049641	FALSE	1225	-0.32421417626258	43	63733191	64273510	0.192136715055622	3	NA	0.192136715055622	3	NA	540319	NA	22	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SOX2	3	181711924	181714436	FALSE	254	3.31923036983022	121	181712144	182793802	0.364342740527346	72	NA	0.364342740527346	72	NA	1081658	NA	2	10	0	FALSE	AMP	PASS
659_bTo_pair	SOX21	13	94709622	94712399	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	4	1	FALSE	CNLOH	PASS
659_bTo_pair	SOX3	23	140502985	140505116	FALSE	1338	0.767200084690243	74	139931991	141176986	0.364342740527346	9	NA	0.364342740527346	9	NA	1244995	NA	6	5	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	SOX30	5	157625679	157671480	FALSE	353	-0.698571741790457	22	157138801	161546576	0.291335969972972	1	0	0.291335969972972	1	0	4407775	1	29	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	SOX4	6	21592768	21598619	FALSE	372	-0.417452461149977	39	20546469	24145837	NA	2	NA	NA	2	NA	3599368	NA	5	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SOX5	12	23529500	24562544	FALSE	757	-0.490002350483383	34	21512373	25195063	NA	2	NA	NA	2	NA	3682690	NA	15	18	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SOX6	11	15966449	16739591	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	18	1	FALSE	DIPLOID	PASS
659_bTo_pair	SOX7	8	10723768	10730512	FALSE	516	-0.746159577374248	19	10611830	11564127	0.365165917639896	1	0	0.365165917639896	1	0	952297	1	9	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	SOX8	16	981808	986979	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	6	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SOX9	17	72121020	72126420	TRUE	1074	1.86295308649125	100	70175538	72126210	0.364342740527346	24	NA	0.364342740527346	24	NA	1950672	NA	2	17	3	FALSE	AMP	PASS
659_bTo_pair	SP1	12	53380176	53416446	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	SP100	2	230415942	230544090	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	32	0	FALSE	DIPLOID	PASS
659_bTo_pair	SP110	2	230167293	230225729	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	SP140	2	230203110	230313215	TRUE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	37	0	FALSE	DIPLOID	PASS
659_bTo_pair	SP140L	2	230327184	230403732	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	SP2	17	47896150	47928957	FALSE	1049	-0.703360644300681	22	47810585	48529853	0.291335969972972	1	0	0.291335969972972	1	0	719268	1	15	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	SP3	2	173906459	173965702	FALSE	153	-0.469039793655258	34	172736055	177217715	NA	2	NA	NA	2	NA	4481660	NA	28	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SP4	7	21428034	21514822	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	14	1	FALSE	GAIN	PASS
659_bTo_pair	SP5	2	170715351	170718078	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	SP6	17	47844908	47855874	FALSE	1049	-0.703360644300681	22	47810585	48529853	0.291335969972972	1	0	0.291335969972972	1	0	719268	1	15	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	SP7	12	53326575	53345315	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	SP8	7	20782283	20786886	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	7	1	FALSE	GAIN	PASS
659_bTo_pair	SP9	2	174334946	174338492	FALSE	153	-0.469039793655258	34	172736055	177217715	NA	2	NA	NA	2	NA	4481660	NA	28	6	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SPA17	11	124673798	124697518	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	SPAAR	9	35909483	35937153	FALSE	591	0.73474920581053	74	35684233	36036976	0.364342740527346	9	NA	0.364342740527346	9	NA	352743	NA	17	2	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	SPACA1	6	88047789	88066832	FALSE	407	-0.739487270214454	18	87337082	88963417	0.180216333675297	0	0	0.180216333675297	0	0	1626335	0	11	8	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SPACA3	17	32970376	32997877	FALSE	1022	-0.670211431189836	22	32030679	35026358	0.291335969972972	1	0	0.291335969972972	1	0	2995679	1	23	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPACA4	19	48606743	48607714	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPACA5B	23	48130657	48132613	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	1	0	FALSE	AMP (many states)	PASS
659_bTo_pair	SPACA6	19	51689128	51712387	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPACA7	13	112376319	112434689	FALSE	844	-0.576217954819194	24	110150427	113263496	0.359751661895656	2	0	0.359751661895656	2	0	3113069	2	19	7	2	FALSE	CNLOH	PASS
659_bTo_pair	SPACA9	9	132878027	132890201	FALSE	625	-0.794391185935477	14	131261330	132889947	0.365165917639896	1	0	0.365165917639896	1	0	1628617	1	17	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPAG1	8	100157906	100259278	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	23	0	FALSE	GAIN	PASS
659_bTo_pair	SPAG11A	8	7847876	7868867	FALSE	511	-2.36610512212239	1	7823742	7848738	0.364342740527346	0	0	0.364342740527346	0	0	24996	0	4	2	0	TRUE	HOMDEL	PASS
659_bTo_pair	SPAG11B	8	7442684	7463674	FALSE	510	-0.906181747703467	12	166288	7823395	0.365165917639896	1	0	0.365165917639896	1	0	7657107	1	48	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPAG16	2	213284379	214410501	FALSE	174	-0.596604116836576	26	213007521	214575779	NA	2	NA	NA	2	NA	1568258	NA	3	16	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SPAG17	1	117953861	118185223	FALSE	43	-0.890933866500247	13	117628427	119906570	0.365165917639896	1	0	0.365165917639896	1	0	2278143	1	13	55	6	FALSE	HETLOSS	PASS
659_bTo_pair	SPAG4	20	35615892	35621049	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	SPAG5	17	28577565	28599279	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	27	0	FALSE	DIPLOID	PASS
659_bTo_pair	SPAG6	10	22345445	22454224	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	14	1	FALSE	CNLOH	PASS
659_bTo_pair	SPAG7	17	4959226	4967872	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	SPAG8	9	35808045	35812272	FALSE	591	0.73474920581053	74	35684233	36036976	0.364342740527346	9	NA	0.364342740527346	9	NA	352743	NA	17	14	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	SPAG9	17	50962174	51120865	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	34	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SPAM1	7	123925237	123971414	FALSE	490	-0.576498321273708	26	116888215	124790543	NA	2	NA	NA	2	NA	7902328	NA	33	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SPANXC	23	141241463	141242496	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	2	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	SPANXD	23	141697411	141698739	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	2	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	SPANXN1	23	145246828	145256112	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	2	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	SPANXN2	23	143711955	143721423	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	3	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	SPANXN3	23	143508735	143517475	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	3	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	SPANXN4	23	143025918	143034702	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	3	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	SPANXN5	23	52796144	52798101	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	2	0	FALSE	AMP (many states)	PASS
659_bTo_pair	SPARC	5	151661096	151687165	FALSE	350	-0.819899512516675	16	150444373	153997804	0.365165917639896	1	0	0.365165917639896	1	0	3553431	1	25	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPARCL1	4	87473335	87531061	FALSE	291	-0.458701040497953	34	83536708	87613131	NA	2	NA	NA	2	NA	4076423	NA	17	14	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SPART	13	36301638	36370180	FALSE	830	-0.745621963362667	19	32401848	39788354	0.365165917639896	1	0	0.365165917639896	1	0	7386506	1	30	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPAST	2	32063547	32157637	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	SPATA1	1	84506300	84566194	FALSE	27	-0.365760579101575	39	77969065	85252731	NA	2	NA	NA	2	NA	7283666	NA	23	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SPATA12	3	57060441	57075432	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPATA13	13	23979805	24307074	FALSE	824	-0.820211361281197	14	23365275	27988570	0.365165917639896	1	0	0.365165917639896	1	0	4623295	1	32	25	1	FALSE	HETLOSS	PASS
659_bTo_pair	SPATA16	3	172889358	173141268	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	12	0	FALSE	GAIN	PASS
659_bTo_pair	SPATA17	1	217631324	217871696	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	SPATA18	4	52051331	52097292	FALSE	283	-0.7726728361031	19	49038034	54241294	0.365165917639896	1	0	0.365165917639896	1	0	5203260	1	15	13	1	FALSE	HETLOSS	PASS
659_bTo_pair	SPATA19	11	133840631	133845538	FALSE	734	-0.516486951202814	27	128842412	134387591	1	2	1	1	2	1	5545179	1	27	6	2	FALSE	DIPLOID	PASS
659_bTo_pair	SPATA2	20	49903391	49915508	FALSE	1216	-0.465272765977354	30	47658376	50278257	1	2	1	1	2	1	2619881	1	18	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	SPATA20	17	50543058	50555852	FALSE	1053	-0.561829441831031	26	49646906	50626743	NA	2	NA	NA	2	NA	979837	NA	25	18	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SPATA21	1	16387117	16437424	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	16	3	FALSE	DIPLOID	PASS
659_bTo_pair	SPATA22	17	3440019	3513852	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPATA24	5	139396563	139404088	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SPATA25	20	45886489	45887635	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	SPATA2L	16	89696343	89701705	FALSE	991	-0.654420383530572	22	89508463	89733977	0.291335969972972	1	0	0.291335969972972	1	0	225514	1	10	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPATA3	2	230990324	231025055	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	5	2	FALSE	DIPLOID	PASS
659_bTo_pair	SPATA31A1	9	39355669	39361959	FALSE	595	-0.209027397852981	47	37442028	67884575	0.365165917639896	3	1	0.365165917639896	3	1	30442547	2	35	10	0	FALSE	GAIN	PASS
659_bTo_pair	SPATA31A3	9	66986304	66992583	FALSE	595	-0.209027397852981	47	37442028	67884575	0.365165917639896	3	1	0.365165917639896	3	1	30442547	2	35	12	2	FALSE	GAIN	PASS
659_bTo_pair	SPATA31A6	9	42183659	42189882	FALSE	595	-0.209027397852981	47	37442028	67884575	0.365165917639896	3	1	0.365165917639896	3	1	30442547	2	35	2	0	FALSE	GAIN	PASS
659_bTo_pair	SPATA31A7	9	61190003	61196280	FALSE	595	-0.209027397852981	47	37442028	67884575	0.365165917639896	3	1	0.365165917639896	3	1	30442547	2	35	6	1	FALSE	GAIN	PASS
659_bTo_pair	SPATA31D1	9	81988772	81995256	FALSE	598	-0.546497547865564	29	78236395	83956411	NA	2	NA	NA	2	NA	5720016	NA	14	21	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SPATA31D3	9	81943586	81950038	FALSE	598	-0.546497547865564	29	78236395	83956411	NA	2	NA	NA	2	NA	5720016	NA	14	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SPATA31D4	9	81928514	81934948	FALSE	598	-0.546497547865564	29	78236395	83956411	NA	2	NA	NA	2	NA	5720016	NA	14	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SPATA31E1	9	87882826	87888899	FALSE	604	-0.547885090101936	27	85547201	90613824	1	2	1	1	2	1	5066623	1	21	19	3	FALSE	DIPLOID	PASS
659_bTo_pair	SPATA32	17	45254393	45262112	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SPATA33	16	89657802	89671272	FALSE	991	-0.654420383530572	22	89508463	89733977	0.291335969972972	1	0	0.291335969972972	1	0	225514	1	10	3	1	FALSE	HETLOSS	PASS
659_bTo_pair	SPATA4	4	176184638	176195671	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	SPATA45	1	212830141	212847649	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	SPATA46	1	162373203	162376870	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	SPATA48	7	50096036	50159830	FALSE	465	0.0412518069674403	56	48245888	50159047	0.365165917639896	4	NA	0.365165917639896	4	NA	1913159	NA	5	11	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SPATA5	4	122923074	123319450	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	SPATA5L1	15	45402331	45421419	FALSE	904	-0.666047806656427	20	44736698	49422632	0.365165917639896	1	0	0.365165917639896	1	0	4685934	1	30	13	1	FALSE	HETLOSS	PASS
659_bTo_pair	SPATA6	1	48295372	48472208	FALSE	16	-0.485631979032023	30	46175602	48453048	1	2	1	1	2	1	2277446	1	32	14	1	TRUE	DIPLOID	PASS
659_bTo_pair	SPATA6L	9	4553386	4666674	FALSE	574	-0.919846303005392	13	2198627	4849539	0.365165917639896	1	0	0.365165917639896	1	0	2650912	1	11	28	5	FALSE	HETLOSS	PASS
659_bTo_pair	SPATA7	14	88384924	88470350	FALSE	870	-0.471399657488227	30	81180359	92000019	1	2	1	1	2	1	10819660	1	29	20	3	FALSE	DIPLOID	PASS
659_bTo_pair	SPATA8	15	96783389	96785615	FALSE	931	-1.05463640239282	8	93072946	98485928	0.342391532111247	0	0	0.342391532111247	0	0	5412982	0	6	3	0	FALSE	HOMDEL	PASS
659_bTo_pair	SPATA9	5	95652181	95698711	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPATC1	8	144012414	144047085	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	SPATC1L	21	46161148	46184476	FALSE	1239	-0.568555801579827	23	44960223	46664365	0.186356639256811	1	0	0.186356639256811	1	0	1704142	1	18	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPATS1	6	44342660	44377167	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	SPATS2	12	49366584	49527424	FALSE	770	-0.500134310902258	34	49065087	50081631	NA	2	NA	NA	2	NA	1016544	NA	25	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SPATS2L	2	200305881	200482263	FALSE	164	-0.381871160033202	39	198084145	201228955	NA	2	NA	NA	2	NA	3144810	NA	19	14	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SPC24	19	11131520	11155808	FALSE	1143	-0.599591757528625	23	11089545	11375998	0.186356639256811	1	0	0.186356639256811	1	0	286453	1	11	6	2	FALSE	HETLOSS	PASS
659_bTo_pair	SPC25	2	168834132	168913371	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	24	2	FALSE	DIPLOID	PASS
659_bTo_pair	SPCS1	3	52704955	52711146	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPCS2	11	74949247	74979031	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	5	1	FALSE	GAIN	PASS
659_bTo_pair	SPCS3	4	176319964	176332245	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPDEF	6	34537802	34556333	FALSE	391	-0.499783837646083	34	33391964	35241176	NA	2	NA	NA	2	NA	1849212	NA	26	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SPDL1	5	169583634	169604778	FALSE	356	-0.773912908266316	17	162095550	171298806	0.365165917639896	1	0	0.365165917639896	1	0	9203256	1	21	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPDYA	2	28782517	28850611	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	SPDYC	11	65170154	65173244	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	7	1	FALSE	GAIN	PASS
659_bTo_pair	SPDYE1	7	44000889	44010122	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	8	1	FALSE	GAIN	PASS
659_bTo_pair	SPDYE16	7	76531319	76541459	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	SPDYE2	7	102551232	102562308	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	SPDYE2B	7	102650325	102661398	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	2	1	FALSE	DIPLOID	PASS
659_bTo_pair	SPDYE3	7	100307702	100322196	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPDYE4	17	8753106	8758559	FALSE	1006	-0.894220729735546	12	8370429	10825247	0.365165917639896	1	0	0.365165917639896	1	0	2454818	1	31	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPDYE5	7	75493625	75504304	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	SPDYE6	7	102347206	102356444	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	SPECC1	17	20009344	20319026	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	22	0	FALSE	CNLOH	PASS
659_bTo_pair	SPECC1L	22	24270817	24417740	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	21	1	FALSE	CNLOH	PASS
659_bTo_pair	SPECC1L-ADORA2A	22	24270898	24442356	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	27	1	FALSE	CNLOH	PASS
659_bTo_pair	SPEF1	20	3777504	3781448	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPEF2	5	35617844	35814611	FALSE	312	-0.206081392785099	47	24487677	35857105	0.365165917639896	3	1	0.365165917639896	3	1	11369428	2	27	42	6	FALSE	GAIN	PASS
659_bTo_pair	SPEG	2	219434846	219498287	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	68	6	FALSE	HETLOSS	PASS
659_bTo_pair	SPEM1	17	7420360	7421632	FALSE	1000	-0.750226164220686	19	7324407	7655594	0.365165917639896	1	0	0.365165917639896	1	0	331187	1	31	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPEM2	17	7425615	7427568	FALSE	1000	-0.750226164220686	19	7324407	7655594	0.365165917639896	1	0	0.365165917639896	1	0	331187	1	31	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPEN	1	15847864	15940460	TRUE	7	-0.0129557771133261	55	15847823	15940242	0.328696605851359	4	NA	0.328696605851359	4	NA	92419	NA	1	60	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	SPERT	13	45702311	45714559	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	SPESP1	15	68818221	68946811	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPG11	15	44562696	44663678	FALSE	902	-0.672637691845835	22	43521582	44676538	0.291335969972972	1	0	0.291335969972972	1	0	1154956	1	21	46	1	FALSE	HETLOSS	PASS
659_bTo_pair	SPG21	15	64963021	64990310	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPG7	16	89490719	89557768	FALSE	991	-0.654420383530572	22	89508463	89733977	0.291335969972972	1	0	0.291335969972972	1	0	225514	1	10	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPHAR	1	229304857	229305504	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPHK1	17	76376584	76387860	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	10	2	FALSE	DIPLOID	PASS
659_bTo_pair	SPHK2	19	48619291	48630717	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	SPHKAP	2	227979950	228181645	FALSE	186	-0.695736902539597	22	226867246	227993567	0.291335969972972	1	0	0.291335969972972	1	0	1126321	1	19	27	2	TRUE	HETLOSS	PASS
659_bTo_pair	SPI1	11	47354860	47378576	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	SPIB	19	50418938	50431313	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPIC	12	101475421	101486997	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	SPICE1	3	113442718	113515187	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	19	1	FALSE	GAIN	PASS
659_bTo_pair	SPIDR	8	47260575	47736306	FALSE	541	-0.815492706726597	16	42338595	47735321	0.365165917639896	1	0	0.365165917639896	1	0	5396726	1	15	21	2	FALSE	HETLOSS	PASS
659_bTo_pair	SPIN1	9	88388419	88478694	FALSE	604	-0.547885090101936	27	85547201	90613824	1	2	1	1	2	1	5066623	1	21	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	SPIN2A	23	57134530	57137625	FALSE	1303	0.0232492223836125	56	53426353	57488811	0.365165917639896	4	NA	0.365165917639896	4	NA	4062458	NA	32	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SPIN2B	23	57118551	57121546	FALSE	1303	0.0232492223836125	56	53426353	57488811	0.365165917639896	4	NA	0.365165917639896	4	NA	4062458	NA	32	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SPIN3	23	56818298	56995827	FALSE	1303	0.0232492223836125	56	53426353	57488811	0.365165917639896	4	NA	0.365165917639896	4	NA	4062458	NA	32	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SPIN4	23	63347228	63351344	FALSE	1305	-0.186408694068352	48	57909690	63785131	0.365165917639896	3	NA	0.365165917639896	3	NA	5875441	NA	3	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SPINDOC	11	63813388	63827718	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SPINK1	5	147824568	147831786	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPINK13	5	148268180	148286254	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	4	2	FALSE	HETLOSS	PASS
659_bTo_pair	SPINK14	5	148169733	148175398	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	1	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPINK2	4	56809860	56821742	FALSE	285	-0.676685623676823	22	55346376	64409389	0.291335969972972	1	0	0.291335969972972	1	0	9063013	1	23	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPINK4	9	33218365	33248567	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	4	2	FALSE	CNLOH	PASS
659_bTo_pair	SPINK5	5	148025683	148137289	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	34	14	FALSE	HETLOSS	PASS
659_bTo_pair	SPINK6	5	148202794	148215137	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPINK7	5	148312419	148315922	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPINK8	3	48306842	48328341	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPINK9	5	148321203	148339849	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPINT1	15	40844018	40858207	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPINT2	19	38244035	38292614	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPINT3	20	45512461	45515624	FALSE	1213	-0.238233999759016	46	45348351	45515632	0.298322295679939	3	NA	0.298322295679939	3	NA	167281	NA	8	1	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	SPINT4	20	45722351	45725830	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	SPIRE1	18	12446512	12658134	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	18	0	FALSE	GAIN	PASS
659_bTo_pair	SPIRE2	16	89818179	89871319	FALSE	993	-0.673014862380027	22	89828600	89919507	0.291335969972972	1	0	0.291335969972972	1	0	90907	1	4	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPN	16	29662979	29670876	FALSE	965	-0.735005669796309	19	28989573	29982749	0.365165917639896	1	0	0.365165917639896	1	0	993176	1	25	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	SPNS1	16	28974221	28984548	FALSE	964	-0.363781394946907	39	28951039	28986896	NA	2	NA	NA	2	NA	35857	NA	3	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SPNS2	17	4498838	4539035	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	16	1	FALSE	HETLOSS	PASS
659_bTo_pair	SPNS3	17	4433688	4488208	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	15	5	FALSE	HETLOSS	PASS
659_bTo_pair	SPO11	20	57329759	57343994	FALSE	1221	-0.44936578355072	34	56249153	58715213	NA	2	NA	NA	2	NA	2466060	NA	27	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SPOCD1	1	31790422	31816051	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	SPOCK1	5	136975298	137598379	FALSE	336	-0.752536733071469	19	135941639	138575278	0.365165917639896	1	0	0.365165917639896	1	0	2633639	1	24	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPOCK2	10	72059035	72089032	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	14	1	FALSE	CNLOH	PASS
659_bTo_pair	SPOCK3	4	166733384	167234796	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPON1	11	13962689	14267884	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	SPON2	4	1166932	1208962	FALSE	272	-0.300029378244858	40	85877	1745020	0.308149309490068	3	1	0.308149309490068	3	1	1659143	2	29	8	0	FALSE	GAIN	PASS
659_bTo_pair	SPOP	17	49598884	49678234	TRUE	1052	0.943183056183035	78	49578592	49646629	0.364342740527346	11	NA	0.364342740527346	11	NA	68037	NA	2	28	1	TRUE	AMP	PASS
659_bTo_pair	SPOPL	2	138501801	138573547	FALSE	145	-0.807795522727044	16	136882284	138780220	0.365165917639896	1	0	0.365165917639896	1	0	1897936	1	4	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPOUT1	9	128819651	128829821	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	16	4	FALSE	HETLOSS	PASS
659_bTo_pair	SPP1	4	87975650	87983426	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	SPP2	2	234050679	234077134	FALSE	189	-0.580904316133535	23	233779383	236380649	0.186356639256811	1	0	0.186356639256811	1	0	2601266	1	10	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	SPPL2A	15	50702266	50765808	FALSE	906	-0.753975485974629	19	49508303	51105073	0.365165917639896	1	0	0.365165917639896	1	0	1596770	1	12	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPPL2B	19	2328615	2354806	FALSE	1120	-0.63588318052236	23	2233887	3062886	0.186356639256811	1	0	0.186356639256811	1	0	828999	1	28	15	2	FALSE	HETLOSS	PASS
659_bTo_pair	SPPL2C	17	45844835	45847072	FALSE	1046	-0.746772159255206	19	45395806	47696360	0.365165917639896	1	0	0.365165917639896	1	0	2300554	1	26	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPPL3	12	120762510	120904371	FALSE	810	-0.438737881374958	34	120127967	120903912	NA	2	NA	NA	2	NA	775945	NA	20	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SPR	2	72887360	72892158	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	SPRED1	15	38252326	38357249	TRUE	891	1.95248286337193	102	38247839	38357218	0.364342740527346	26	NA	0.364342740527346	26	NA	109379	NA	1	39	0	FALSE	AMP	PASS
659_bTo_pair	SPRED2	2	65310851	65432637	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	SPRED3	19	38388421	38399587	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	SPRN	10	133420666	133424572	FALSE	676	-0.612597388333807	25	132187132	133626712	0.365165917639896	1	0	0.365165917639896	1	0	1439580	1	27	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPRR1A	1	152985231	152985500	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	2	1	FALSE	DIPLOID	PASS
659_bTo_pair	SPRR1B	1	153031202	153032900	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	1	1	FALSE	DIPLOID	PASS
659_bTo_pair	SPRR2A	1	153056113	153057537	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	SPRR2B	1	153070224	153070840	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	SPRR2D	1	153039725	153041931	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	1	1	FALSE	DIPLOID	PASS
659_bTo_pair	SPRR2E	1	153093135	153106184	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	1	1	FALSE	DIPLOID	PASS
659_bTo_pair	SPRR2F	1	153112114	153113515	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	1	1	FALSE	DIPLOID	PASS
659_bTo_pair	SPRR2G	1	153149582	153150869	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	1	0	FALSE	DIPLOID	PASS
659_bTo_pair	SPRR3	1	153001747	153003856	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	2	1	FALSE	DIPLOID	PASS
659_bTo_pair	SPRR4	1	152970666	152972574	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	1	1	FALSE	DIPLOID	PASS
659_bTo_pair	SPRTN	1	231337104	231355023	TRUE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	13	2	FALSE	HETLOSS	PASS
659_bTo_pair	SPRY1	4	123396795	123403760	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	SPRY2	13	80335976	80340951	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	4	0	FALSE	CNLOH	PASS
659_bTo_pair	SPRY4	5	142310427	142326455	FALSE	340	-0.601911474553767	26	141303298	142319732	NA	2	NA	NA	2	NA	1016434	NA	36	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SPRYD3	12	53064316	53079420	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	SPRYD4	12	56468567	56479707	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	19	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SPRYD7	13	49912706	49936490	FALSE	835	-0.766581964775609	19	48490223	50953919	0.365165917639896	1	0	0.365165917639896	1	0	2463696	1	18	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	SPSB1	1	9292880	9369532	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	SPSB2	12	6870935	6889358	FALSE	743	-0.145896859645485	51	6620180	6938488	0.365165917639896	3	NA	0.365165917639896	3	NA	318308	NA	20	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SPSB3	16	1776712	1793700	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	24	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SPSB4	3	141051402	141148611	FALSE	246	-0.322519280750539	43	139344000	142447976	0.192136715055622	3	NA	0.192136715055622	3	NA	3103976	NA	19	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SPTA1	1	158610706	158686715	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	60	4	FALSE	DIPLOID	PASS
659_bTo_pair	SPTAN1	9	128552558	128633662	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	60	1	FALSE	HETLOSS	PASS
659_bTo_pair	SPTB	14	64746283	64879907	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	48	6	FALSE	DIPLOID	PASS
659_bTo_pair	SPTBN1	2	54456285	54671445	FALSE	110	-0.435434252584523	30	48441014	54599245	1	2	1	1	2	1	6158231	1	18	47	2	TRUE	DIPLOID	PASS
659_bTo_pair	SPTBN2	11	66685248	66729226	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	48	1	FALSE	GAIN	PASS
659_bTo_pair	SPTBN4	19	40466241	40576464	FALSE	1173	-0.760690164248215	19	40322104	40807873	0.365165917639896	1	0	0.365165917639896	1	0	485769	1	21	49	3	FALSE	HETLOSS	PASS
659_bTo_pair	SPTBN5	15	41848144	41894077	FALSE	897	-0.755497767970361	19	41841591	42081025	0.365165917639896	1	0	0.365165917639896	1	0	239434	1	6	77	5	FALSE	HETLOSS	PASS
659_bTo_pair	SPTLC1	9	92000087	92115384	FALSE	606	-0.547644280946133	27	91214370	95094057	1	2	1	1	2	1	3879687	1	31	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	SPTLC2	14	77505997	77616773	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	SPTLC3	20	13008979	13169103	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	SPTSSA	14	34432789	34462356	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	SPTSSB	3	161344792	161372880	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	2	0	FALSE	GAIN	PASS
659_bTo_pair	SPTY2D1	11	18606401	18634791	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	SPTY2D1OS	11	18588781	18610255	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	SPX	12	21526307	21541249	FALSE	757	-0.490002350483383	34	21512373	25195063	NA	2	NA	NA	2	NA	3682690	NA	15	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SPZ1	5	80319625	80321842	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	SQLE	8	124998497	125022283	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	13	0	FALSE	GAIN	PASS
659_bTo_pair	SQOR	15	45631148	45691294	FALSE	904	-0.666047806656427	20	44736698	49422632	0.365165917639896	1	0	0.365165917639896	1	0	4685934	1	30	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	SQSTM1	5	179806398	179838078	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	SRA1	5	140537340	140558252	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	14	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SRARP	1	16004236	16008807	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	SRBD1	2	45388680	45612165	FALSE	106	-0.392858868113437	39	42335725	46184779	NA	2	NA	NA	2	NA	3849054	NA	22	22	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SRC	20	37344685	37406050	FALSE	1204	1.83415787315144	100	37346109	37405996	0.364342740527346	23	NA	0.364342740527346	23	NA	59887	NA	1	31	2	FALSE	AMP	PASS
659_bTo_pair	SRCAP	16	30698209	30741409	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	54	0	FALSE	DIPLOID	PASS
659_bTo_pair	SRCIN1	17	38530016	38605930	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	24	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SRD5A1	5	6633343	6674386	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	7	2	FALSE	GAIN	PASS
659_bTo_pair	SRD5A2	2	31522480	31581067	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	SRD5A3	4	55346109	55373096	FALSE	285	-0.676685623676823	22	55346376	64409389	0.291335969972972	1	0	0.291335969972972	1	0	9063013	1	23	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	SREBF1	17	17810399	17837002	FALSE	1014	-0.559544539688918	26	17247059	18028347	NA	2	NA	NA	2	NA	781288	NA	10	23	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SREBF2	22	41833079	41907308	FALSE	1269	-0.443951758803067	34	41205309	42514754	NA	2	NA	NA	2	NA	1309445	NA	31	21	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SREK1	5	66139971	66183615	FALSE	323	-0.645106866010582	25	58495036	67196614	0.365165917639896	1	0	0.365165917639896	1	0	8701578	1	31	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	SREK1IP1	5	64718144	64768685	FALSE	323	-0.645106866010582	25	58495036	67196614	0.365165917639896	1	0	0.365165917639896	1	0	8701578	1	31	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	SRF	6	43171299	43181507	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	SRFBP1	5	121961961	122075570	FALSE	331	-0.706980197323045	20	112861366	122075379	0.365165917639896	1	0	0.365165917639896	1	0	9214013	1	31	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	SRGAP1	12	63844293	64162221	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	26	0	FALSE	DIPLOID	PASS
659_bTo_pair	SRGAP2	1	206203345	206464443	FALSE	69	-0.48847123055109	34	205798087	206732058	NA	2	NA	NA	2	NA	933971	NA	14	25	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SRGAP2B	1	144887265	145095528	FALSE	44	-0.0508975396039555	55	119911615	146019534	0.328696605851359	4	NA	0.328696605851359	4	NA	26107919	NA	33	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SRGAP2C	1	121184810	121392822	FALSE	44	-0.0508975396039555	55	119911615	146019534	0.328696605851359	4	NA	0.328696605851359	4	NA	26107919	NA	33	1	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SRGAP3	3	8980591	9363053	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	26	1	FALSE	HETLOSS	PASS
659_bTo_pair	SRGN	10	69088106	69104811	FALSE	651	-0.523280686314431	28	68722553	70760843	0.351300687168522	2	0	0.351300687168522	2	0	2038290	2	27	4	1	FALSE	CNLOH	PASS
659_bTo_pair	SRI	7	88205118	88226993	FALSE	479	-0.448308050861149	30	87602941	92590330	1	2	1	1	2	1	4987389	1	30	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	SRL	16	4189374	4242080	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	SRM	1	11054584	11060024	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	SRMS	20	63540810	63547504	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	SRP14	15	40035739	40039188	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	6	2	FALSE	HETLOSS	PASS
659_bTo_pair	SRP19	5	112861188	112898371	FALSE	331	-0.706980197323045	20	112861366	122075379	0.365165917639896	1	0	0.365165917639896	1	0	9214013	1	31	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	SRP54	14	34981957	35029567	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	SRP68	17	76038775	76072653	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	SRP72	4	56467336	56503681	FALSE	285	-0.676685623676823	22	55346376	64409389	0.291335969972972	1	0	0.291335969972972	1	0	9063013	1	23	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	SRP9	1	225777813	225790466	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	SRPK1	6	35832966	35921342	FALSE	393	-0.47521086997284	30	35476361	36677919	1	2	1	1	2	1	1201558	1	21	17	1	FALSE	DIPLOID	PASS
659_bTo_pair	SRPK2	7	105110704	105399308	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	30	0	FALSE	DIPLOID	PASS
659_bTo_pair	SRPK3	23	153776412	153785732	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	23	4	FALSE	INDETERMINATE	PASS
659_bTo_pair	SRPRA	11	126262919	126269144	FALSE	732	-0.497254377564454	34	125672754	127000522	NA	2	NA	NA	2	NA	1327768	NA	19	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SRPRB	3	133784033	133825772	FALSE	242	-0.32037413513609	40	130560427	134790274	0.308149309490068	3	1	0.308149309490068	3	1	4229847	2	29	7	0	FALSE	GAIN	PASS
659_bTo_pair	SRPX	23	38149336	38220924	FALSE	1286	-0.229369008369366	46	37655739	38687617	0.298322295679939	3	NA	0.298322295679939	3	NA	1031878	NA	12	10	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SRPX2	23	100644166	100675788	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	11	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	SRR	17	2303383	2325260	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	SRRD	22	26483877	26494658	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	12	0	FALSE	CNLOH	PASS
659_bTo_pair	SRRM1	1	24631716	24673267	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	20	1	FALSE	DIPLOID	PASS
659_bTo_pair	SRRM2	16	2752329	2772538	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	41	3	FALSE	HETLOSS	PASS
659_bTo_pair	SRRM3	7	76201900	76287288	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	SRRM4	12	118981495	119163051	FALSE	808	-0.531025796359709	27	115966146	120090026	1	2	1	1	2	1	4123880	1	23	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	SRRM5	19	43596617	43614497	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	SRRT	7	100875111	100888664	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	SRSF1	17	58003360	58007346	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SRSF10	1	23964804	23980927	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	SRSF11	1	70205682	70253052	FALSE	23	-0.326404897444941	43	65224778	71080923	0.192136715055622	3	NA	0.192136715055622	3	NA	5856145	NA	29	12	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SRSF12	6	89095959	89118081	FALSE	408	2.21380467584721	108	89080771	89098700	0.364342740527346	31	NA	0.364342740527346	31	NA	17929	NA	2	6	0	TRUE	AMP	PASS
659_bTo_pair	SRSF2	17	76734115	76737374	FALSE	1079	1.98096544338825	104	76734274	76738977	0.364342740527346	26	NA	0.364342740527346	26	NA	4703	NA	3	12	0	FALSE	AMP	PASS
659_bTo_pair	SRSF3	6	36594353	36605600	FALSE	393	-0.47521086997284	30	35476361	36677919	1	2	1	1	2	1	1201558	1	21	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	SRSF4	1	29147743	29181987	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	9	2	FALSE	DIPLOID	PASS
659_bTo_pair	SRSF5	14	69726900	69772005	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	SRSF6	20	43457928	43464247	FALSE	1209	0.298091148204376	63	42081860	43513601	0.364342740527346	6	NA	0.364342740527346	6	NA	1431741	NA	3	7	0	FALSE	AMP (many states)	PASS
659_bTo_pair	SRSF7	2	38743599	38751494	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	SRSF8	11	95067197	95071224	FALSE	717	-0.427991611956568	34	94512673	100992623	NA	2	NA	NA	2	NA	6479950	NA	19	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SRSF9	12	120461668	120469793	FALSE	810	-0.438737881374958	34	120127967	120903912	NA	2	NA	NA	2	NA	775945	NA	20	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SRXN1	20	646615	653370	FALSE	1195	-0.60512265366003	23	87765	1537211	0.186356639256811	1	0	0.186356639256811	1	0	1449446	1	33	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	SS18	18	26016253	26091217	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	11	0	FALSE	GAIN	PASS
659_bTo_pair	SS18L1	20	62143795	62182484	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	SS18L2	3	42581840	42595114	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	SSB	2	169791933	169812064	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	SSBP1	7	141738321	141787922	FALSE	500	-0.745042700177313	19	140929950	142218464	0.365165917639896	1	0	0.365165917639896	1	0	1288514	1	15	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	SSBP2	5	81413021	81751797	FALSE	327	-0.729214269739125	19	80961009	86619409	0.365165917639896	1	0	0.365165917639896	1	0	5658400	1	14	17	1	FALSE	HETLOSS	PASS
659_bTo_pair	SSBP3	1	54225432	54413479	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	SSBP4	19	18418864	18434562	FALSE	1159	-0.165917001507678	49	18177228	19138502	0.365165917639896	3	1	0.365165917639896	3	1	961274	2	36	15	0	FALSE	GAIN	PASS
659_bTo_pair	SSC4D	7	76389334	76409695	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	14	3	FALSE	DIPLOID	PASS
659_bTo_pair	SSC5D	19	55488404	55519098	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	28	7	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SSH1	12	108778192	108857590	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	23	1	FALSE	DIPLOID	PASS
659_bTo_pair	SSH2	17	29625938	29930276	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	29	1	FALSE	DIPLOID	PASS
659_bTo_pair	SSH3	11	67303448	67312607	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	17	0	FALSE	GAIN	PASS
659_bTo_pair	SSMEM1	7	130206344	130216844	FALSE	494	-0.536776174448359	29	129225418	130685270	NA	2	NA	NA	2	NA	1459852	NA	17	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SSNA1	9	137188647	137190370	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	SSPN	12	26121991	26299290	FALSE	759	-0.427669886187443	30	25503824	31088026	1	2	1	1	2	1	5584202	1	28	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	SSPO	7	149776042	149833979	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	120	15	FALSE	HETLOSS	PASS
659_bTo_pair	SSR1	6	7268306	7347446	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	SSR2	1	156009048	156020959	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	SSR3	3	156540140	156555184	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	5	2	TRUE	GAIN	PASS
659_bTo_pair	SSR4	23	153793516	153798505	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	8	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	SSRP1	11	57325985	57335877	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	17	0	FALSE	GAIN	PASS
659_bTo_pair	SSSCA1	11	65570430	65573942	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	9	0	FALSE	GAIN	PASS
659_bTo_pair	SST	3	187668906	187670399	FALSE	265	-0.393829618143586	39	186790414	187702028	NA	2	NA	NA	2	NA	911614	NA	9	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SSTR1	14	38207999	38213067	FALSE	858	-0.388807455224718	39	37680254	45134449	NA	2	NA	NA	2	NA	7454195	NA	16	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SSTR2	17	73165012	73176633	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	SSTR3	22	37204238	37212322	FALSE	1263	-0.528184158498335	29	36991204	37967644	NA	2	NA	NA	2	NA	976440	NA	31	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SSTR4	20	23035386	23036812	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	SSTR5	16	1078781	1080142	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	5	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SSU72	1	1541673	1574869	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	SSUH2	3	8619400	8745040	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	SSX1	23	48255317	48267444	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	6	0	FALSE	AMP (many states)	PASS
659_bTo_pair	SSX2IP	1	84643707	84690803	FALSE	27	-0.365760579101575	39	77969065	85252731	NA	2	NA	NA	2	NA	7283666	NA	23	14	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SSX3	23	48346428	48356707	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	6	0	FALSE	AMP (many states)	PASS
659_bTo_pair	SSX4	23	48383516	48393347	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	1	0	FALSE	AMP (many states)	PASS
659_bTo_pair	SSX4B	23	48402078	48411910	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	2	0	FALSE	AMP (many states)	PASS
659_bTo_pair	SSX5	23	48186220	48196763	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	7	0	FALSE	AMP (many states)	PASS
659_bTo_pair	SSX7	23	52644090	52654900	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	6	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ST13	22	40824535	40857022	FALSE	1267	-0.448885551917151	34	39313004	41087696	NA	2	NA	NA	2	NA	1774692	NA	24	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ST14	11	130159562	130210376	FALSE	734	-0.516486951202814	27	128842412	134387591	1	2	1	1	2	1	5545179	1	27	22	2	FALSE	DIPLOID	PASS
659_bTo_pair	ST18	8	52110839	52460959	FALSE	543	-0.403572692824667	39	47962754	54147613	NA	2	NA	NA	2	NA	6184859	NA	18	26	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ST20	15	79898840	79923702	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	1	0	FALSE	HETLOSS	PASS
659_bTo_pair	ST20-MTHFS	15	79845150	79923754	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	ST3GAL1	8	133454848	133571940	FALSE	565	-0.282741903777565	44	129748604	134610527	0.345317016959666	3	1	0.345317016959666	3	1	4861923	2	18	7	2	FALSE	GAIN	PASS
659_bTo_pair	ST3GAL2	16	70375978	70439237	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ST3GAL3	1	43705824	43931165	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	ST3GAL4	11	126355640	126440344	FALSE	732	-0.497254377564454	34	125672754	127000522	NA	2	NA	NA	2	NA	1327768	NA	19	20	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ST3GAL5	2	85837120	85905199	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	ST3GAL6	3	98732236	98821201	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	24	1	FALSE	GAIN	PASS
659_bTo_pair	ST5	11	8693351	8910951	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	23	2	FALSE	DIPLOID	PASS
659_bTo_pair	ST6GAL1	3	186930485	187078553	FALSE	265	-0.393829618143586	39	186790414	187702028	NA	2	NA	NA	2	NA	911614	NA	9	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ST6GAL2	2	106801600	106887108	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	10	2	FALSE	DIPLOID	PASS
659_bTo_pair	ST6GALNAC1	17	76624761	76643838	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	ST6GALNAC2	17	76565379	76586956	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ST6GALNAC3	1	76074719	76634601	FALSE	25	-0.394411030612058	39	74026891	77942032	NA	2	NA	NA	2	NA	3915141	NA	22	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ST6GALNAC4	9	127907886	127917038	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	ST6GALNAC5	1	76867441	77065711	FALSE	25	-0.394411030612058	39	74026891	77942032	NA	2	NA	NA	2	NA	3915141	NA	22	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ST6GALNAC6	9	127885321	127905408	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ST7	7	116953238	117230103	FALSE	490	-0.576498321273708	26	116888215	124790543	NA	2	NA	NA	2	NA	7902328	NA	33	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ST7L	1	112523518	112620825	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	16	1	FALSE	HETLOSS	PASS
659_bTo_pair	ST8SIA1	12	22063773	22437041	FALSE	757	-0.490002350483383	34	21512373	25195063	NA	2	NA	NA	2	NA	3682690	NA	15	9	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ST8SIA2	15	92393828	92468728	FALSE	929	-0.700679172673924	22	90876261	92655591	0.291335969972972	1	0	0.291335969972972	1	0	1779330	1	13	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	ST8SIA3	18	57350813	57371731	FALSE	1105	-0.785555027616249	16	52752095	58670682	0.365165917639896	1	0	0.365165917639896	1	0	5918587	1	19	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	ST8SIA4	5	100806935	100903266	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ST8SIA5	18	46667821	46759257	FALSE	1100	-0.758401070483502	19	45624783	47803983	0.365165917639896	1	0	0.365165917639896	1	0	2179200	1	22	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	ST8SIA6	10	17318383	17454330	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	9	0	FALSE	CNLOH	PASS
659_bTo_pair	STAB1	3	52495338	52524495	FALSE	224	-0.84777820586227	13	52412877	52540527	0.365165917639896	1	0	0.365165917639896	1	0	127650	1	7	68	5	FALSE	HETLOSS	PASS
659_bTo_pair	STAB2	12	103587273	103766727	FALSE	798	-0.492720037723834	34	102839233	105367537	NA	2	NA	NA	2	NA	2528304	NA	20	70	4	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	STAC	3	36380344	36548007	FALSE	209	-0.637968449787088	26	31990360	37328493	NA	2	NA	NA	2	NA	5338133	NA	26	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	STAC2	17	39210536	39225872	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	12	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	STAC3	12	57243453	57251193	FALSE	780	-0.355982590799428	43	57138514	57456829	0.192136715055622	3	NA	0.192136715055622	3	NA	318315	NA	9	12	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	STAG1	3	136336233	136752403	TRUE	243	0.194698893310263	62	134795430	136855479	0.364342740527346	5	NA	0.364342740527346	5	NA	2060049	NA	6	51	1	FALSE	AMP (many states)	PASS
659_bTo_pair	STAG2	23	123960212	124422664	TRUE	1330	1.75700231074177	98	123733010	124378275	0.364342740527346	22	NA	0.364342740527346	22	NA	645265	NA	6	115	6	TRUE	AMP	PASS
659_bTo_pair	STAG3	7	100177563	100221488	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	39	1	FALSE	HETLOSS	PASS
659_bTo_pair	STAM	10	17644125	17715914	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	15	0	FALSE	CNLOH	PASS
659_bTo_pair	STAM2	2	152116801	152175992	FALSE	149	-0.454179855872301	30	147845197	157628657	1	2	1	1	2	1	9783460	1	30	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	STAMBP	2	73828916	73873659	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	STAMBPL1	10	88879734	88975153	FALSE	658	-0.534531933000134	29	88275028	88948930	NA	2	NA	NA	2	NA	673902	NA	9	23	2	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	STAP1	4	67558728	67607337	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	STAP2	19	4324043	4342786	FALSE	1124	-0.62008955817668	23	4168484	5151543	0.186356639256811	1	0	0.186356639256811	1	0	983059	1	28	12	3	FALSE	HETLOSS	PASS
659_bTo_pair	STAR	8	38143649	38151265	FALSE	532	-0.898955944857558	13	37845201	38269206	0.365165917639896	1	0	0.365165917639896	1	0	424005	1	12	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	STARD10	11	72754729	72793681	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	7	0	FALSE	GAIN	PASS
659_bTo_pair	STARD13	13	33103135	33350630	FALSE	830	-0.745621963362667	19	32401848	39788354	0.365165917639896	1	0	0.365165917639896	1	0	7386506	1	30	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	STARD3	17	39637065	39663484	FALSE	1026	-0.886931394907893	13	39564387	39685917	0.365165917639896	1	0	0.365165917639896	1	0	121530	1	7	14	1	FALSE	HETLOSS	PASS
659_bTo_pair	STARD3NL	7	38178222	38230671	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	8	0	FALSE	GAIN	PASS
659_bTo_pair	STARD4	5	111496033	111512590	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	STARD5	15	81309053	81324183	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	STARD6	18	54324358	54357964	FALSE	1105	-0.785555027616249	16	52752095	58670682	0.365165917639896	1	0	0.365165917639896	1	0	5918587	1	19	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	STARD7	2	96184859	96208825	FALSE	126	-0.498143911483876	34	95935616	96208449	NA	2	NA	NA	2	NA	272833	NA	6	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	STARD8	23	68647666	68725842	FALSE	1311	0.0481524733197309	56	68048478	70452009	0.365165917639896	4	NA	0.365165917639896	4	NA	2403531	NA	19	22	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	STARD9	15	42575659	42720981	FALSE	898	-0.892191685906218	12	42081573	42681446	0.365165917639896	1	0	0.365165917639896	1	0	599873	1	13	71	0	TRUE	HETLOSS	PASS
659_bTo_pair	STAT1	2	190964358	191020960	FALSE	161	-0.46057869782823	30	190057617	197310624	1	2	1	1	2	1	7253007	1	23	23	2	FALSE	DIPLOID	PASS
659_bTo_pair	STAT2	12	56341597	56360155	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	22	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	STAT3	17	42313324	42388568	FALSE	1037	1.09688418143906	81	42199373	42388507	0.364342740527346	13	NA	0.364342740527346	13	NA	189134	NA	3	33	0	FALSE	AMP	PASS
659_bTo_pair	STAT4	2	191029576	191151596	FALSE	161	-0.46057869782823	30	190057617	197310624	1	2	1	1	2	1	7253007	1	23	25	2	FALSE	DIPLOID	PASS
659_bTo_pair	STAT5A	17	42287547	42311943	FALSE	1037	1.09688418143906	81	42199373	42388507	0.364342740527346	13	NA	0.364342740527346	13	NA	189134	NA	3	28	0	FALSE	AMP	PASS
659_bTo_pair	STAT5B	17	42199168	42276707	FALSE	1037	1.09688418143906	81	42199373	42388507	0.364342740527346	13	NA	0.364342740527346	13	NA	189134	NA	3	31	0	FALSE	AMP	PASS
659_bTo_pair	STAT6	12	57095408	57132139	FALSE	779	2.01501303392276	104	57089281	57128995	0.364342740527346	27	NA	0.364342740527346	27	NA	39714	NA	3	32	3	FALSE	AMP	PASS
659_bTo_pair	STATH	4	69995930	70002570	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	STAU1	20	49113339	49188367	FALSE	1216	-0.465272765977354	30	47658376	50278257	1	2	1	1	2	1	2619881	1	18	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	STAU2	8	73420369	73747708	FALSE	553	-0.248188717260806	46	68331252	73878866	0.298322295679939	3	NA	0.298322295679939	3	NA	5547614	NA	20	15	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	STBD1	4	76306026	76311599	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	STC1	8	23841915	23854807	FALSE	520	-0.862302460890099	13	23703081	26040940	0.365165917639896	1	0	0.365165917639896	1	0	2337859	1	12	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	STC2	5	173314713	173329503	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	STEAP1	7	90154375	90164829	FALSE	479	-0.448308050861149	30	87602941	92590330	1	2	1	1	2	1	4987389	1	30	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	STEAP1B	7	22419444	22727613	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	10	2	FALSE	GAIN	PASS
659_bTo_pair	STEAP2	7	90167590	90238137	FALSE	479	-0.448308050861149	30	87602941	92590330	1	2	1	1	2	1	4987389	1	30	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	STEAP3	2	119223831	119265652	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	STEAP4	7	88270892	88306891	FALSE	479	-0.448308050861149	30	87602941	92590330	1	2	1	1	2	1	4987389	1	30	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	STH	17	45999250	45999694	FALSE	1046	-0.746772159255206	19	45395806	47696360	0.365165917639896	1	0	0.365165917639896	1	0	2300554	1	26	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	STIL	1	47250139	47314147	FALSE	16	-0.485631979032023	30	46175602	48453048	1	2	1	1	2	1	2277446	1	32	26	1	FALSE	DIPLOID	PASS
659_bTo_pair	STIM1	11	3854527	4093210	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	18	1	FALSE	HETLOSS	PASS
659_bTo_pair	STIM2	4	26857678	27025381	FALSE	278	-0.217595572850614	44	20704713	38137253	0.345317016959666	3	1	0.345317016959666	3	1	17432540	2	29	17	1	FALSE	GAIN	PASS
659_bTo_pair	STIMATE	3	52836219	52897596	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	STIP1	11	64185272	64204543	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	15	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	STK10	5	172042073	172188386	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	22	2	FALSE	HETLOSS	PASS
659_bTo_pair	STK11	19	1177558	1228435	TRUE	1115	1.20380003387696	84	1172664	1228189	0.364342740527346	14	NA	0.364342740527346	14	NA	55525	NA	2	24	4	FALSE	AMP	PASS
659_bTo_pair	STK11IP	2	219597860	219616451	FALSE	177	-0.713780356009728	19	219579555	221572276	0.365165917639896	1	0	0.365165917639896	1	0	1992721	1	3	27	0	FALSE	HETLOSS	PASS
659_bTo_pair	STK16	2	219245455	219250337	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	STK17A	7	43582758	43650713	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	15	1	FALSE	GAIN	PASS
659_bTo_pair	STK17B	2	196133566	196176503	FALSE	161	-0.46057869782823	30	190057617	197310624	1	2	1	1	2	1	7253007	1	23	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	STK19	6	31971091	31982821	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	STK24	13	98445185	98577940	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	16	3	FALSE	CNLOH	PASS
659_bTo_pair	STK25	2	241492674	241509730	FALSE	194	-0.588828356865968	23	240025214	241817025	0.186356639256811	1	0	0.186356639256811	1	0	1791811	1	34	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	STK26	23	132023265	132075943	FALSE	1335	0.100243493544559	59	130066940	134244999	0.308533751035793	5	NA	0.308533751035793	5	NA	4178059	NA	21	12	0	FALSE	AMP (many states)	PASS
659_bTo_pair	STK3	8	98371228	98942827	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	18	0	FALSE	GAIN	PASS
659_bTo_pair	STK31	7	23710167	23832513	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	26	3	FALSE	GAIN	PASS
659_bTo_pair	STK32A	5	147234963	147387852	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	14	2	FALSE	HETLOSS	PASS
659_bTo_pair	STK32B	4	5051442	5500998	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	12	1	FALSE	GAIN	PASS
659_bTo_pair	STK32C	10	132207492	132331847	FALSE	676	-0.612597388333807	25	132187132	133626712	0.365165917639896	1	0	0.365165917639896	1	0	1439580	1	27	18	4	FALSE	HETLOSS	PASS
659_bTo_pair	STK33	11	8391868	8594289	FALSE	684	1.64099925987129	96	8140103	8392667	0.364342740527346	20	NA	0.364342740527346	20	NA	252564	NA	3	15	3	TRUE	AMP	PASS
659_bTo_pair	STK35	20	2101611	2177038	FALSE	1196	0.0145909737502021	56	1551807	2207199	0.365165917639896	4	NA	0.365165917639896	4	NA	655392	NA	7	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	STK36	2	218672026	218702716	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	28	0	FALSE	HETLOSS	PASS
659_bTo_pair	STK38	6	36493892	36547470	FALSE	393	-0.47521086997284	30	35476361	36677919	1	2	1	1	2	1	1201558	1	21	13	2	FALSE	DIPLOID	PASS
659_bTo_pair	STK38L	12	27243968	27325959	FALSE	759	-0.427669886187443	30	25503824	31088026	1	2	1	1	2	1	5584202	1	28	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	STK39	2	167954020	168248141	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	18	1	FALSE	DIPLOID	PASS
659_bTo_pair	STK4	20	44966474	45079959	FALSE	1210	-0.476296426145969	34	43513997	45110019	NA	2	NA	NA	2	NA	1596022	NA	26	12	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	STK40	1	36339624	36385896	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	23	0	FALSE	DIPLOID	PASS
659_bTo_pair	STKLD1	9	133376367	133406096	FALSE	627	-0.867007674319489	12	132986776	134157867	0.365165917639896	1	0	0.365165917639896	1	0	1171091	1	28	19	1	FALSE	HETLOSS	PASS
659_bTo_pair	STMN1	1	25884181	25906991	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	STMN2	8	79610814	79666175	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	6	0	FALSE	GAIN	PASS
659_bTo_pair	STMN3	20	63639705	63657682	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	STMN4	8	27235323	27258420	FALSE	522	-0.616914645700195	26	26383178	27467373	NA	2	NA	NA	2	NA	1084195	NA	8	7	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	STMND1	6	17102258	17131372	FALSE	370	-0.377368469329801	39	15246548	20212233	NA	2	NA	NA	2	NA	4965685	NA	18	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	STMP1	7	135662496	135693418	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	STN1	10	103882542	103918205	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	9	0	FALSE	CNLOH	PASS
659_bTo_pair	STOM	9	121338988	121370304	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	STOML1	15	73978923	73994622	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	STOML2	9	35099776	35103195	FALSE	589	-0.372578422434124	39	35089175	35107712	NA	2	NA	NA	2	NA	18537	NA	3	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	STOML3	13	38965925	38991066	FALSE	830	-0.745621963362667	19	32401848	39788354	0.365165917639896	1	0	0.365165917639896	1	0	7386506	1	30	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	STON1	2	48529383	48598513	FALSE	110	-0.435434252584523	30	48441014	54599245	1	2	1	1	2	1	6158231	1	18	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	STON1-GTF2A1L	2	48529925	48776517	FALSE	110	-0.435434252584523	30	48441014	54599245	1	2	1	1	2	1	6158231	1	18	38	1	FALSE	DIPLOID	PASS
659_bTo_pair	STON2	14	81260656	81436465	FALSE	870	-0.471399657488227	30	81180359	92000019	1	2	1	1	2	1	10819660	1	29	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	STOX1	10	68827541	68895432	FALSE	651	-0.523280686314431	28	68722553	70760843	0.351300687168522	2	0	0.351300687168522	2	0	2038290	2	27	13	1	FALSE	CNLOH	PASS
659_bTo_pair	STOX2	4	183797692	184023526	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	STPG1	1	24356999	24416934	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	10	3	FALSE	DIPLOID	PASS
659_bTo_pair	STPG2	4	97184093	98143240	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	STPG3	9	137251261	137253483	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	STPG4	2	47045538	47155378	FALSE	108	-0.751130758275331	19	46479657	47176488	0.365165917639896	1	0	0.365165917639896	1	0	696831	1	11	16	2	FALSE	HETLOSS	PASS
659_bTo_pair	STRA6	15	74179466	74212267	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	22	3	FALSE	HETLOSS	PASS
659_bTo_pair	STRA8	7	135231979	135258492	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	STRADA	17	63682336	63741986	FALSE	1064	-0.419094292936043	39	61867575	63873599	NA	2	NA	NA	2	NA	2006024	NA	24	27	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	STRADB	2	201387858	201480846	FALSE	166	-0.425780118113581	30	201288659	203854096	1	2	1	1	2	1	2565437	1	22	23	3	FALSE	DIPLOID	PASS
659_bTo_pair	STRAP	12	15882391	15903478	FALSE	753	-0.517160615058114	27	12726042	18242949	1	2	1	1	2	1	5516907	1	31	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	STRBP	9	123109500	123268576	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	18	1	FALSE	HETLOSS	PASS
659_bTo_pair	STRC	15	43599563	43618800	FALSE	902	-0.672637691845835	22	43521582	44676538	0.291335969972972	1	0	0.291335969972972	1	0	1154956	1	21	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	STRIP1	1	110031577	110074641	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	28	0	FALSE	HETLOSS	PASS
659_bTo_pair	STRIP2	7	129434433	129488399	FALSE	494	-0.536776174448359	29	129225418	130685270	NA	2	NA	NA	2	NA	1459852	NA	17	23	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	STRN	2	36843640	36966472	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	STRN3	14	30893799	31026401	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	STRN4	19	46719507	46746994	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	19	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	STS	23	7219456	7354810	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	12	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	STT3A	11	125591712	125625215	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	19	2	FALSE	DIPLOID	PASS
659_bTo_pair	STT3B	3	31532638	31637622	FALSE	207	-0.954774113940666	11	30728408	31636070	0.289956079954009	0	0	0.289956079954009	0	0	907662	0	2	17	0	FALSE	HOMDEL	PASS
659_bTo_pair	STUB1	16	680224	682870	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	STUM	1	226548800	226609214	FALSE	76	-0.00392767001280583	55	226359415	226631680	0.328696605851359	4	NA	0.328696605851359	4	NA	272265	NA	2	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	STX10	19	13144058	13150383	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	STX11	6	144150526	144188370	FALSE	431	-0.504239059693729	30	143136912	149638436	1	2	1	1	2	1	6501524	1	29	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	STX12	1	27773183	27824452	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	STX16	20	58651253	58679526	FALSE	1221	-0.44936578355072	34	56249153	58715213	NA	2	NA	NA	2	NA	2466060	NA	27	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	STX16-NPEPL1	20	58651434	58715410	FALSE	1221	-0.44936578355072	34	56249153	58715213	NA	2	NA	NA	2	NA	2466060	NA	27	22	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	STX17	9	99906633	99970341	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	STX18	4	4415742	4542346	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	13	0	FALSE	GAIN	PASS
659_bTo_pair	STX19	3	94014369	94028610	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	4	0	FALSE	GAIN	PASS
659_bTo_pair	STX1A	7	73699206	73719672	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	STX1B	16	30989256	31010661	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	STX2	12	130789600	130839266	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	STX3	11	59713456	59805882	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	14	1	FALSE	GAIN	PASS
659_bTo_pair	STX4	16	31032889	31042975	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	STX5	11	62806897	62832088	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	11	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	STX6	1	180972712	181023121	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	STX7	6	132445867	132513198	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	STX8	17	9250471	9576591	FALSE	1006	-0.894220729735546	12	8370429	10825247	0.365165917639896	1	0	0.365165917639896	1	0	2454818	1	31	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	STXBP1	9	127579370	127696027	FALSE	619	-0.820686000870706	14	125203036	127778681	0.365165917639896	1	0	0.365165917639896	1	0	2575645	1	23	20	1	FALSE	HETLOSS	PASS
659_bTo_pair	STXBP2	19	7636881	7647873	FALSE	1130	-0.690953718254595	21	7440128	7870576	0.140309795179477	0	0	0.140309795179477	0	0	430448	0	25	18	4	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	STXBP3	1	108746674	108809526	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	19	1	FALSE	HETLOSS	PASS
659_bTo_pair	STXBP4	17	54968727	55173632	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	17	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	STXBP5	6	147204425	147390476	FALSE	431	-0.504239059693729	30	143136912	149638436	1	2	1	1	2	1	6501524	1	29	30	0	FALSE	DIPLOID	PASS
659_bTo_pair	STXBP5L	3	120908072	121424761	FALSE	236	-0.555107352649266	26	120168171	121419120	NA	2	NA	NA	2	NA	1250949	NA	8	29	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	STXBP6	14	24809656	25050297	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	STYK1	12	10618939	10674318	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	11	2	FALSE	DIPLOID	PASS
659_bTo_pair	STYX	14	52730180	52774998	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	STYXL1	7	75996338	76048004	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	SUB1	5	32531633	32604079	FALSE	312	-0.206081392785099	47	24487677	35857105	0.365165917639896	3	1	0.365165917639896	3	1	11369428	2	27	4	0	FALSE	GAIN	PASS
659_bTo_pair	SUCLA2	13	47745736	48037968	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	SUCLG1	2	84423523	84460045	FALSE	123	0.207940593066719	62	79122912	84431581	0.364342740527346	5	NA	0.364342740527346	5	NA	5308669	NA	5	9	0	TRUE	AMP (many states)	PASS
659_bTo_pair	SUCLG2	3	67360460	67654614	FALSE	228	-0.860828429618822	13	64010871	69385924	0.365165917639896	1	0	0.365165917639896	1	0	5375053	1	16	12	2	FALSE	HETLOSS	PASS
659_bTo_pair	SUCNR1	3	151873643	151884619	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	6	0	FALSE	GAIN	PASS
659_bTo_pair	SUCO	1	172532349	172611833	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	32	0	FALSE	DIPLOID	PASS
659_bTo_pair	SUDS3	12	118376380	118418031	FALSE	808	-0.531025796359709	27	115966146	120090026	1	2	1	1	2	1	4123880	1	23	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	SUFU	10	102503987	102633535	TRUE	668	2.05905819665372	105	102504164	102645101	0.364342740527346	28	NA	0.364342740527346	28	NA	140937	NA	2	40	9	FALSE	AMP	PASS
659_bTo_pair	SUGCT	7	40134977	40860763	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	15	2	FALSE	GAIN	PASS
659_bTo_pair	SUGP1	19	19276018	19320844	FALSE	1161	-0.292613860626304	46	19182590	19465611	0.298322295679939	3	NA	0.298322295679939	3	NA	283021	NA	10	17	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SUGP2	19	18990888	19034023	FALSE	1159	-0.165917001507678	49	18177228	19138502	0.365165917639896	3	1	0.365165917639896	3	1	961274	2	36	19	0	FALSE	GAIN	PASS
659_bTo_pair	SUGT1	13	52652709	52700909	FALSE	836	-0.444239733377228	32	50956423	72747004	0.365165917639896	2	0	0.365165917639896	2	0	21790581	2	40	14	0	FALSE	CNLOH	PASS
659_bTo_pair	SULF1	8	69466624	69660915	FALSE	553	-0.248188717260806	46	68331252	73878866	0.298322295679939	3	NA	0.298322295679939	3	NA	5547614	NA	20	20	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SULF2	20	47656348	47786616	FALSE	1215	1.55100709289964	91	47501904	47656846	0.364342740527346	19	NA	0.364342740527346	19	NA	154942	NA	2	26	0	TRUE	AMP	PASS
659_bTo_pair	SULT1A1	16	28605196	28623625	FALSE	962	-0.522336070959039	29	27403203	28925074	NA	2	NA	NA	2	NA	1521871	NA	25	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SULT1A2	16	28591943	28597109	FALSE	962	-0.522336070959039	29	27403203	28925074	NA	2	NA	NA	2	NA	1521871	NA	25	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SULT1A3	16	30199228	30204310	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	SULT1A4	16	29459889	29464976	FALSE	965	-0.735005669796309	19	28989573	29982749	0.365165917639896	1	0	0.365165917639896	1	0	993176	1	25	1	0	FALSE	HETLOSS	PASS
659_bTo_pair	SULT1B1	4	69721162	69787961	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	SULT1C2	2	108288639	108309915	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	SULT1C3	2	108247195	108265351	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	SULT1C4	2	108377911	108388057	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	SULT1E1	4	69841212	69860152	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	SULT2A1	19	47870466	47886397	FALSE	1187	-0.64296711085636	26	47021158	48297657	NA	2	NA	NA	2	NA	1276499	NA	31	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SULT2B1	19	48552075	48599425	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	9	2	FALSE	HETLOSS	PASS
659_bTo_pair	SULT4A1	22	43824509	43862503	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	8	0	FALSE	CNLOH	PASS
659_bTo_pair	SULT6B1	2	37167820	37196598	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	SUMF1	3	3700814	4467281	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	25	4	FALSE	HETLOSS	PASS
659_bTo_pair	SUMF2	7	56064002	56080670	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	SUMO1	2	202206180	202238608	FALSE	166	-0.425780118113581	30	201288659	203854096	1	2	1	1	2	1	2565437	1	22	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	SUMO2	17	75165586	75182983	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	SUMO3	21	44805617	44818779	FALSE	1237	-0.454133559576209	34	44600832	44873643	NA	2	NA	NA	2	NA	272811	NA	15	5	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SUMO4	6	149400227	149401292	FALSE	431	-0.504239059693729	30	143136912	149638436	1	2	1	1	2	1	6501524	1	29	2	1	FALSE	DIPLOID	PASS
659_bTo_pair	SUN1	7	816615	896435	FALSE	450	-0.329551508654045	40	193185	2379492	0.308149309490068	3	1	0.308149309490068	3	1	2186307	2	26	31	1	FALSE	GAIN	PASS
659_bTo_pair	SUN2	22	38734725	38794143	FALSE	1265	-0.53141020507802	29	38041114	39152464	NA	2	NA	NA	2	NA	1111350	NA	31	21	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SUN3	7	47987148	48029119	FALSE	464	-0.323591849229323	42	45157835	48245556	0.189552622934988	3	0	0.189552622934988	3	0	3087721	3	12	10	1	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	SUN5	20	32983773	33004433	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	SUOX	12	55997180	56006641	FALSE	776	-0.798270269619795	16	55987117	56074534	0.365165917639896	1	0	0.365165917639896	1	0	87417	1	4	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	SUPT16H	14	21351472	21384266	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	25	0	FALSE	DIPLOID	PASS
659_bTo_pair	SUPT20H	13	37009312	37059713	FALSE	830	-0.745621963362667	19	32401848	39788354	0.365165917639896	1	0	0.365165917639896	1	0	7386506	1	30	27	0	FALSE	HETLOSS	PASS
659_bTo_pair	SUPT3H	6	44809317	45377953	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	SUPT4H1	17	58345175	58353093	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SUPT5H	19	39436156	39476670	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	28	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SUPT6H	17	28662091	28702684	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	37	0	FALSE	DIPLOID	PASS
659_bTo_pair	SUPT7L	2	27650812	27663840	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	SUPV3L1	10	69180232	69209099	FALSE	651	-0.523280686314431	28	68722553	70760843	0.351300687168522	2	0	0.351300687168522	2	0	2038290	2	27	18	0	FALSE	CNLOH	PASS
659_bTo_pair	SURF1	9	133351755	133356676	FALSE	627	-0.867007674319489	12	132986776	134157867	0.365165917639896	1	0	0.365165917639896	1	0	1171091	1	28	9	2	FALSE	HETLOSS	PASS
659_bTo_pair	SURF2	9	133356552	133361169	FALSE	627	-0.867007674319489	12	132986776	134157867	0.365165917639896	1	0	0.365165917639896	1	0	1171091	1	28	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	SURF4	9	133361449	133376166	FALSE	627	-0.867007674319489	12	132986776	134157867	0.365165917639896	1	0	0.365165917639896	1	0	1171091	1	28	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	SURF6	9	133328774	133336398	FALSE	627	-0.867007674319489	12	132986776	134157867	0.365165917639896	1	0	0.365165917639896	1	0	1171091	1	28	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	SUSD1	9	112040785	112175408	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	18	1	FALSE	DIPLOID	PASS
659_bTo_pair	SUSD2	22	24181259	24189110	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	17	2	FALSE	CNLOH	PASS
659_bTo_pair	SUSD3	9	93058688	93085138	FALSE	606	-0.547644280946133	27	91214370	95094057	1	2	1	1	2	1	3879687	1	31	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	SUSD4	1	223220819	223364202	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	SUSD5	3	33150042	33219215	FALSE	209	-0.637968449787088	26	31990360	37328493	NA	2	NA	NA	2	NA	5338133	NA	26	10	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SUSD6	14	69611596	69715142	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	SUV39H1	23	48695554	48709012	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	9	0	FALSE	AMP (many states)	PASS
659_bTo_pair	SUV39H2	10	14878820	14904315	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	9	0	FALSE	CNLOH	PASS
659_bTo_pair	SUZ12	17	31937018	32001045	FALSE	1021	0.88632241734584	76	31932034	32027770	0.364342740527346	10	NA	0.364342740527346	10	NA	95736	NA	2	32	0	FALSE	AMP	PASS
659_bTo_pair	SV2A	1	149903318	149917882	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	SV2B	15	91099950	91301309	FALSE	929	-0.700679172673924	22	90876261	92655591	0.291335969972972	1	0	0.291335969972972	1	0	1779330	1	13	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	SV2C	5	76083172	76353939	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	SVBP	1	42807052	42817252	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	SVEP1	9	110365251	110579880	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	65	4	FALSE	DIPLOID	PASS
659_bTo_pair	SVIL	10	29457338	29736781	FALSE	638	-0.441875687518437	32	27112127	31908266	0.365165917639896	2	0	0.365165917639896	2	0	4796139	2	18	43	1	FALSE	CNLOH	PASS
659_bTo_pair	SVIP	11	22813799	22830299	FALSE	689	-0.596895402665017	26	22674905	26692543	NA	2	NA	NA	2	NA	4017638	NA	7	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SVOP	12	108907741	109021240	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	SVOPL	7	138594285	138701352	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	15	3	FALSE	DIPLOID	PASS
659_bTo_pair	SWAP70	11	9664077	9752991	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	SWI5	9	128275379	128288990	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	SWSAP1	19	11374685	11376951	FALSE	1143	-0.599591757528625	23	11089545	11375998	0.186356639256811	1	0	0.186356639256811	1	0	286453	1	11	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	SWT1	1	185157080	185291765	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	SYAP1	23	16719632	16765336	FALSE	1276	0.0763243231691416	59	15827382	20064777	0.308533751035793	5	NA	0.308533751035793	5	NA	4237395	NA	24	9	0	FALSE	AMP (many states)	PASS
659_bTo_pair	SYBU	8	109573978	109691791	FALSE	561	-0.210477706860293	47	102652438	116770243	0.365165917639896	3	1	0.365165917639896	3	1	14117805	2	32	14	0	FALSE	GAIN	PASS
659_bTo_pair	SYCE1	10	133553901	133569835	FALSE	676	-0.612597388333807	25	132187132	133626712	0.365165917639896	1	0	0.365165917639896	1	0	1439580	1	27	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	SYCE1L	16	77199397	77213215	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	11	2	FALSE	DIPLOID	PASS
659_bTo_pair	SYCE2	19	12898786	12919276	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	SYCE3	22	50551112	50562905	FALSE	1272	-0.260847831900416	46	50286270	50731222	0.298322295679939	3	NA	0.298322295679939	3	NA	444952	NA	19	2	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SYCN	19	39202831	39204266	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	3	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SYCP1	1	114854803	114995370	FALSE	37	-0.781726809773331	16	114718157	116404480	0.365165917639896	1	0	0.365165917639896	1	0	1686323	1	12	31	1	FALSE	HETLOSS	PASS
659_bTo_pair	SYCP2	20	59863563	59933655	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	46	2	FALSE	DIPLOID	PASS
659_bTo_pair	SYCP2L	6	10886831	10979320	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	28	2	FALSE	DIPLOID	PASS
659_bTo_pair	SYCP3	12	101728648	101739472	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	SYDE1	19	15107403	15114988	FALSE	1149	-0.413849407553013	38	14562540	15157819	0.164051638880412	2	0	0.164051638880412	2	0	595279	2	17	13	0	FALSE	CNLOH	PASS
659_bTo_pair	SYDE2	1	85156873	85201046	FALSE	27	-0.365760579101575	39	77969065	85252731	NA	2	NA	NA	2	NA	7283666	NA	23	18	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SYF2	1	25222679	25232502	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	SYK	9	90801787	90898549	FALSE	605	1.37781204630002	87	90802013	90898367	0.364342740527346	16	NA	0.364342740527346	16	NA	96354	NA	1	28	2	FALSE	AMP	PASS
659_bTo_pair	SYMPK	19	45815410	45863290	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	30	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SYN1	23	47571898	47619943	FALSE	1295	1.60267874947713	93	47556283	47574016	0.364342740527346	19	NA	0.364342740527346	19	NA	17733	NA	2	24	1	TRUE	AMP	PASS
659_bTo_pair	SYN2	3	12004402	12191400	FALSE	199	-1.0441448018759	8	10200366	12187515	0.342391532111247	0	0	0.342391532111247	0	0	1987149	0	14	20	1	TRUE	HOMDEL	suppress_large_homdel
659_bTo_pair	SYN3	22	32512552	33058372	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	20	2	FALSE	CNLOH	PASS
659_bTo_pair	SYNC	1	32680360	32703596	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	9	4	FALSE	DIPLOID	PASS
659_bTo_pair	SYNCRIP	6	85607785	85643792	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	SYNDIG1	20	24469199	24666616	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	SYNDIG1L	14	74405893	74426102	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	SYNE1	6	152121684	152637801	FALSE	439	2.32958881776228	110	151651774	152129335	0.364342740527346	34	NA	0.364342740527346	34	NA	477561	NA	2	196	29	TRUE	AMP	PASS
659_bTo_pair	SYNE2	14	63852983	64226433	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	134	10	FALSE	DIPLOID	PASS
659_bTo_pair	SYNE3	14	95407266	95475836	FALSE	874	-0.38394723851277	39	95191724	95543957	NA	2	NA	NA	2	NA	352233	NA	3	20	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SYNE4	19	36003299	36008793	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	10	2	FALSE	HETLOSS	PASS
659_bTo_pair	SYNGAP1	6	33419661	33457541	FALSE	391	-0.499783837646083	34	33391964	35241176	NA	2	NA	NA	2	NA	1849212	NA	26	32	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SYNGR1	22	39349925	39385588	FALSE	1267	-0.448885551917151	34	39313004	41087696	NA	2	NA	NA	2	NA	1774692	NA	24	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SYNGR2	17	78168558	78173527	FALSE	1080	-0.537824093701074	27	76741010	78870935	1	2	1	1	2	1	2129925	1	20	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	SYNGR3	16	1989660	1994275	FALSE	938	-0.541386594301884	29	1947002	2038739	NA	2	NA	NA	2	NA	91737	NA	11	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SYNGR4	19	48364395	48376376	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	SYNJ1	21	32628759	32728048	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	36	3	FALSE	DIPLOID	PASS
659_bTo_pair	SYNJ2	6	157981887	158099176	FALSE	442	-0.485239870020868	34	157293045	158767513	NA	2	NA	NA	2	NA	1474468	NA	11	32	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SYNJ2BP	14	70366496	70417061	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	SYNJ2BP-COX16	14	70326064	70417074	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	SYNM	15	99098217	99135593	FALSE	933	-0.918772702357227	12	98968746	101922991	0.365165917639896	1	0	0.365165917639896	1	0	2954245	1	21	21	4	FALSE	HETLOSS	PASS
659_bTo_pair	SYNPO	5	150601080	150659220	FALSE	350	-0.819899512516675	16	150444373	153997804	0.365165917639896	1	0	0.365165917639896	1	0	3553431	1	25	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	SYNPO2	4	118850688	119061247	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	SYNPO2L	10	73644881	73663803	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	14	1	FALSE	CNLOH	PASS
659_bTo_pair	SYNPR	3	63228315	63616921	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	SYNRG	17	37514797	37609496	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	28	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SYP	23	49187804	49200259	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	8	0	FALSE	AMP (many states)	PASS
659_bTo_pair	SYPL1	7	106090503	106112576	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	SYPL2	1	109466628	109482137	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	SYS1	20	45361937	45376798	FALSE	1213	-0.238233999759016	46	45348351	45515632	0.298322295679939	3	NA	0.298322295679939	3	NA	167281	NA	8	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SYS1-DBNDD2	20	45363200	45410610	FALSE	1213	-0.238233999759016	46	45348351	45515632	0.298322295679939	3	NA	0.298322295679939	3	NA	167281	NA	8	17	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SYT1	12	78863993	79452008	FALSE	793	-0.510041181295141	29	76355979	85286979	NA	2	NA	NA	2	NA	8931000	NA	22	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SYT10	12	33374238	33439819	FALSE	760	-0.171000692864655	50	31089058	38321207	0.218007130395584	4	2	0.218007130395584	4	2	7232149	2	15	10	0	FALSE	TETRAPLOID	PASS
659_bTo_pair	SYT11	1	155859509	155885199	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	SYT12	11	67006778	67050863	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	10	0	FALSE	GAIN	PASS
659_bTo_pair	SYT13	11	45240301	45286319	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	SYT14	1	209938174	210171389	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	SYT15	10	46578217	46594173	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	5	0	FALSE	CNLOH	PASS
659_bTo_pair	SYT16	14	61811974	62112550	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	11	3	FALSE	DIPLOID	PASS
659_bTo_pair	SYT17	16	19167971	19268334	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	SYT2	1	202590596	202710417	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	SYT3	19	50621307	50639827	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	SYT4	18	43267878	43277650	FALSE	1098	-0.618424500548994	26	42085793	43277316	NA	2	NA	NA	2	NA	1191523	NA	3	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SYT5	19	55171199	55180441	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	10	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SYT6	1	114089291	114153919	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	SYT7	11	61515313	61581148	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	15	0	FALSE	GAIN	PASS
659_bTo_pair	SYT8	11	1828307	1837521	FALSE	679	-0.702000712925199	21	1256247	1938477	0.140309795179477	0	0	0.140309795179477	0	0	682230	0	19	9	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	SYT9	11	7238778	7469042	FALSE	683	-0.403180715137318	35	6615199	8138345	1	2	1	1	2	1	1523146	1	28	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	SYTL1	1	27342020	27353937	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	16	3	FALSE	DIPLOID	PASS
659_bTo_pair	SYTL2	11	85694224	85811159	FALSE	712	-0.188800010767045	48	77590086	86068715	0.365165917639896	3	NA	0.365165917639896	3	NA	8478629	NA	30	22	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SYTL3	6	158650014	158764876	FALSE	442	-0.485239870020868	34	157293045	158767513	NA	2	NA	NA	2	NA	1474468	NA	11	16	4	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	SYTL4	23	100674491	100732123	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	16	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	SYTL5	23	38006582	38128819	FALSE	1286	-0.229369008369366	46	37655739	38687617	0.298322295679939	3	NA	0.298322295679939	3	NA	1031878	NA	12	17	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	SYVN1	11	65121780	65134533	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	18	0	FALSE	GAIN	PASS
659_bTo_pair	SZRD1	1	16352575	16398145	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	SZT2	1	43389882	43454247	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	81	0	FALSE	DIPLOID	PASS
659_bTo_pair	TAAR1	6	132644984	132646003	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	5	2	FALSE	DIPLOID	PASS
659_bTo_pair	TAAR2	6	132617022	132624275	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	TAAR5	6	132588673	132589686	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	TAAR6	6	132570322	132571359	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	TAAR8	6	132552693	132553721	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	TAAR9	6	132538290	132539336	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	TAB1	22	39399741	39437060	FALSE	1267	-0.448885551917151	34	39313004	41087696	NA	2	NA	NA	2	NA	1774692	NA	24	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TAB2	6	149218641	149411613	FALSE	431	-0.504239059693729	30	143136912	149638436	1	2	1	1	2	1	6501524	1	29	14	2	FALSE	DIPLOID	PASS
659_bTo_pair	TAB3	23	30827442	30975084	FALSE	1282	-0.198839212217093	48	28789325	33339312	0.365165917639896	3	NA	0.365165917639896	3	NA	4549987	NA	11	12	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TAC1	7	97731908	97740472	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	TAC3	12	57010000	57028883	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TAC4	17	49838309	49848017	FALSE	1053	-0.561829441831031	26	49646906	50626743	NA	2	NA	NA	2	NA	979837	NA	25	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TACC1	8	38728186	38853028	FALSE	536	-0.812766686991614	14	38512585	41896345	0.365165917639896	1	0	0.365165917639896	1	0	3383760	1	19	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	TACC2	10	121989174	122254545	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	48	9	FALSE	CNLOH	PASS
659_bTo_pair	TACC3	4	1721490	1745176	FALSE	272	-0.300029378244858	40	85877	1745020	0.308149309490068	3	1	0.308149309490068	3	1	1659143	2	29	18	1	FALSE	GAIN	PASS
659_bTo_pair	TACO1	17	63600872	63608365	FALSE	1064	-0.419094292936043	39	61867575	63873599	NA	2	NA	NA	2	NA	2006024	NA	24	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TACR1	2	75046463	75199700	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TACR2	10	69403903	69416867	FALSE	651	-0.523280686314431	28	68722553	70760843	0.351300687168522	2	0	0.351300687168522	2	0	2038290	2	27	6	0	FALSE	CNLOH	PASS
659_bTo_pair	TACR3	4	103586031	103719816	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	TACSTD2	1	58575423	58577773	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	TADA1	1	166856510	166876327	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	TADA2A	17	37406874	37479730	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	15	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TADA2B	4	7041899	7057952	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	9	0	FALSE	GAIN	PASS
659_bTo_pair	TADA3	3	9779860	9793011	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	TAF1	23	71366239	71532374	FALSE	1316	1.04206548234375	81	71366326	71529797	0.364342740527346	12	NA	0.364342740527346	12	NA	163471	NA	1	50	0	FALSE	AMP	PASS
659_bTo_pair	TAF10	11	6606296	6612667	FALSE	682	-0.308581000695747	43	6240079	6614875	0.192136715055622	3	NA	0.192136715055622	3	NA	374796	NA	15	16	3	FALSE	GAIN (many states)	PASS
659_bTo_pair	TAF11	6	34877462	34888089	FALSE	391	-0.499783837646083	34	33391964	35241176	NA	2	NA	NA	2	NA	1849212	NA	26	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TAF12	1	28589323	28643085	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	TAF13	1	109062486	109076002	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	TAF15	17	35713791	35864615	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	65	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TAF1A	1	222557902	222589933	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	TAF1B	2	9843354	9934416	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	15	4	FALSE	DIPLOID	PASS
659_bTo_pair	TAF1C	16	84177847	84187070	FALSE	987	-0.578642888038652	23	81999201	85806436	0.186356639256811	1	0	0.186356639256811	1	0	3807235	1	31	16	2	FALSE	HETLOSS	PASS
659_bTo_pair	TAF1D	11	93729948	93784391	FALSE	715	-0.44311716102168	34	90214063	94410681	NA	2	NA	NA	2	NA	4196618	NA	16	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TAF1L	9	32629454	32635669	FALSE	586	1.40811151760028	88	32630356	32784840	0.364342740527346	16	NA	0.364342740527346	16	NA	154484	NA	2	22	1	FALSE	AMP	PASS
659_bTo_pair	TAF2	8	119730775	119832863	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	29	0	FALSE	GAIN	PASS
659_bTo_pair	TAF3	10	7818504	8016627	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	13	2	TRUE	CNLOH	PASS
659_bTo_pair	TAF4	20	61953469	62065810	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	20	2	FALSE	DIPLOID	PASS
659_bTo_pair	TAF4B	18	26225936	26391685	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	18	0	FALSE	GAIN	PASS
659_bTo_pair	TAF5	10	103367967	103389065	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	15	0	FALSE	CNLOH	PASS
659_bTo_pair	TAF5L	1	229593111	229626047	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	TAF6	7	100107070	100119841	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	TAF6L	11	62771303	62787342	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	12	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TAF7	5	141260225	141320821	FALSE	339	-0.747375863769128	19	140786750	141303022	0.365165917639896	1	0	0.365165917639896	1	0	516272	1	34	9	0	TRUE	HETLOSS	PASS
659_bTo_pair	TAF7L	23	101268253	101293057	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	13	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	TAF8	6	42050513	42087461	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	TAF9	5	69364743	69370013	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	TAF9B	23	78129748	78139706	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	7	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	TAGAP	6	159034468	159045152	FALSE	444	-0.505238631103688	30	158776425	160753038	1	2	1	1	2	1	1976613	1	17	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	TAGLN	11	117199321	117204782	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	TAGLN2	1	159918107	159925732	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	TAGLN3	3	111998664	112013887	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	4	0	FALSE	GAIN	PASS
659_bTo_pair	TAL1	1	47216290	47232220	FALSE	16	-0.485631979032023	30	46175602	48453048	1	2	1	1	2	1	2277446	1	32	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	TAL2	9	105662457	105663112	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	TALDO1	11	747329	765024	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	8	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TAMM41	3	11790442	11846919	FALSE	199	-1.0441448018759	8	10200366	12187515	0.342391532111247	0	0	0.342391532111247	0	0	1987149	0	14	9	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TANC1	2	158968671	159232659	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	34	1	FALSE	DIPLOID	PASS
659_bTo_pair	TANC2	17	63009556	63427699	FALSE	1064	-0.419094292936043	39	61867575	63873599	NA	2	NA	NA	2	NA	2006024	NA	24	36	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TANGO2	22	20017014	20065926	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	10	0	FALSE	CNLOH	PASS
659_bTo_pair	TANGO6	16	68843604	69085180	FALSE	980	1.20622892385685	84	68732393	68860244	0.364342740527346	14	NA	0.364342740527346	14	NA	127851	NA	2	22	2	TRUE	AMP	PASS
659_bTo_pair	TANK	2	161136908	161236221	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	TAOK1	17	29390464	29551904	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	20	2	FALSE	DIPLOID	PASS
659_bTo_pair	TAOK2	16	29973641	29992261	FALSE	965	-0.735005669796309	19	28989573	29982749	0.365165917639896	1	0	0.365165917639896	1	0	993176	1	25	27	0	TRUE	HETLOSS	PASS
659_bTo_pair	TAOK3	12	118149801	118372945	FALSE	808	-0.531025796359709	27	115966146	120090026	1	2	1	1	2	1	4123880	1	23	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	TAP1	6	32845209	32853978	FALSE	385	-0.53324371793928	29	32822341	32859522	NA	2	NA	NA	2	NA	37181	NA	5	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TAP2	6	32821833	32838780	FALSE	385	-0.53324371793928	29	32822341	32859522	NA	2	NA	NA	2	NA	37181	NA	5	13	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TAPBP	6	33299694	33314387	FALSE	389	-0.565050845620731	23	33163789	33316917	0.186356639256811	1	0	0.186356639256811	1	0	153128	1	13	11	2	FALSE	HETLOSS	PASS
659_bTo_pair	TAPBPL	12	6451690	6466517	FALSE	741	-0.251609480735115	44	4489790	6567957	0.345317016959666	3	1	0.345317016959666	3	1	2078167	2	28	15	0	FALSE	GAIN	PASS
659_bTo_pair	TAPT1	4	16160505	16227410	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	15	0	FALSE	GAIN	PASS
659_bTo_pair	TARBP1	1	234391313	234479103	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	34	6	TRUE	HETLOSS	PASS
659_bTo_pair	TARBP2	12	53500921	53506431	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	TARDBP	1	11012344	11026420	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	TARM1	19	54069895	54081365	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	TARS	5	33440696	33469539	FALSE	312	-0.206081392785099	47	24487677	35857105	0.365165917639896	3	1	0.365165917639896	3	1	11369428	2	27	20	1	FALSE	GAIN	PASS
659_bTo_pair	TARS2	1	150487364	150507609	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	18	1	FALSE	DIPLOID	PASS
659_bTo_pair	TARSL2	15	101653598	101724604	FALSE	933	-0.918772702357227	12	98968746	101922991	0.365165917639896	1	0	0.365165917639896	1	0	2954245	1	21	20	3	FALSE	HETLOSS	PASS
659_bTo_pair	TAS1R1	1	6555181	6579757	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	TAS1R2	1	18839599	18859682	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	TAS1R3	1	1331314	1335306	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	12	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TAS2R1	5	9628997	9712378	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	4	2	FALSE	GAIN	PASS
659_bTo_pair	TAS2R10	12	10825317	10826358	FALSE	748	0.115902835270215	57	10722867	11717834	0.334914946507217	5	2	0.334914946507217	5	2	994967	3	26	4	0	FALSE	AMP	PASS
659_bTo_pair	TAS2R13	12	10907926	10909562	FALSE	748	0.115902835270215	57	10722867	11717834	0.334914946507217	5	2	0.334914946507217	5	2	994967	3	26	4	1	FALSE	AMP	PASS
659_bTo_pair	TAS2R14	12	10937406	11171573	FALSE	748	0.115902835270215	57	10722867	11717834	0.334914946507217	5	2	0.334914946507217	5	2	994967	3	26	35	20	FALSE	AMP	PASS
659_bTo_pair	TAS2R16	7	122994704	122995700	FALSE	490	-0.576498321273708	26	116888215	124790543	NA	2	NA	NA	2	NA	7902328	NA	33	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TAS2R19	12	11021619	11022620	FALSE	748	0.115902835270215	57	10722867	11717834	0.334914946507217	5	2	0.334914946507217	5	2	994967	3	26	4	2	FALSE	AMP	PASS
659_bTo_pair	TAS2R20	12	10996495	10997875	FALSE	748	0.115902835270215	57	10722867	11717834	0.334914946507217	5	2	0.334914946507217	5	2	994967	3	26	4	4	FALSE	AMP	PASS
659_bTo_pair	TAS2R3	7	141764097	141765197	FALSE	500	-0.745042700177313	19	140929950	142218464	0.365165917639896	1	0	0.365165917639896	1	0	1288514	1	15	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	TAS2R30	12	11132958	11134644	FALSE	748	0.115902835270215	57	10722867	11717834	0.334914946507217	5	2	0.334914946507217	5	2	994967	3	26	4	2	FALSE	AMP	PASS
659_bTo_pair	TAS2R31	12	11030387	11031407	FALSE	748	0.115902835270215	57	10722867	11717834	0.334914946507217	5	2	0.334914946507217	5	2	994967	3	26	4	4	FALSE	AMP	PASS
659_bTo_pair	TAS2R38	7	141972631	141973773	FALSE	500	-0.745042700177313	19	140929950	142218464	0.365165917639896	1	0	0.365165917639896	1	0	1288514	1	15	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	TAS2R39	7	143183419	143184435	FALSE	503	-0.495530614890199	34	143026241	143572680	NA	2	NA	NA	2	NA	546439	NA	15	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TAS2R4	7	141778442	141780819	FALSE	500	-0.745042700177313	19	140929950	142218464	0.365165917639896	1	0	0.365165917639896	1	0	1288514	1	15	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	TAS2R40	7	143222037	143223079	FALSE	503	-0.495530614890199	34	143026241	143572680	NA	2	NA	NA	2	NA	546439	NA	15	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TAS2R41	7	143477873	143478796	FALSE	503	-0.495530614890199	34	143026241	143572680	NA	2	NA	NA	2	NA	546439	NA	15	4	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TAS2R42	12	11185993	11186937	FALSE	748	0.115902835270215	57	10722867	11717834	0.334914946507217	5	2	0.334914946507217	5	2	994967	3	26	3	2	FALSE	AMP	PASS
659_bTo_pair	TAS2R43	12	11091287	11092313	FALSE	748	0.115902835270215	57	10722867	11717834	0.334914946507217	5	2	0.334914946507217	5	2	994967	3	26	4	4	FALSE	AMP	PASS
659_bTo_pair	TAS2R46	12	11061365	11062294	FALSE	748	0.115902835270215	57	10722867	11717834	0.334914946507217	5	2	0.334914946507217	5	2	994967	3	26	4	1	FALSE	AMP	PASS
659_bTo_pair	TAS2R5	7	141790217	141791367	FALSE	500	-0.745042700177313	19	140929950	142218464	0.365165917639896	1	0	0.365165917639896	1	0	1288514	1	15	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	TAS2R50	12	10985913	10986912	FALSE	748	0.115902835270215	57	10722867	11717834	0.334914946507217	5	2	0.334914946507217	5	2	994967	3	26	4	1	FALSE	AMP	PASS
659_bTo_pair	TAS2R60	7	143443453	143444409	FALSE	503	-0.495530614890199	34	143026241	143572680	NA	2	NA	NA	2	NA	546439	NA	15	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TAS2R7	12	10801532	10802627	FALSE	748	0.115902835270215	57	10722867	11717834	0.334914946507217	5	2	0.334914946507217	5	2	994967	3	26	4	0	FALSE	AMP	PASS
659_bTo_pair	TAS2R8	12	10806051	10807293	FALSE	748	0.115902835270215	57	10722867	11717834	0.334914946507217	5	2	0.334914946507217	5	2	994967	3	26	4	1	FALSE	AMP	PASS
659_bTo_pair	TAS2R9	12	10809094	10810168	FALSE	748	0.115902835270215	57	10722867	11717834	0.334914946507217	5	2	0.334914946507217	5	2	994967	3	26	4	1	FALSE	AMP	PASS
659_bTo_pair	TASP1	20	13389392	13638940	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	TAT	16	71565660	71577130	FALSE	983	-0.428709389755029	30	71178941	72171154	1	2	1	1	2	1	992213	1	22	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	TATDN1	8	124488485	124539458	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	14	1	FALSE	GAIN	PASS
659_bTo_pair	TATDN2	3	10248023	10281218	FALSE	199	-1.0441448018759	8	10200366	12187515	0.342391532111247	0	0	0.342391532111247	0	0	1987149	0	14	13	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TATDN3	1	212791828	212816626	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	TAX1BP1	7	27739331	27844564	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	18	0	FALSE	GAIN	PASS
659_bTo_pair	TAX1BP3	17	3662896	3668682	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	TAZ	23	154411518	154421726	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	10	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	TBATA	10	70771239	70785401	FALSE	652	-0.821968360096703	16	70771379	71285405	0.365165917639896	1	0	0.365165917639896	1	0	514026	1	4	9	2	FALSE	HETLOSS	PASS
659_bTo_pair	TBC1D1	4	37891087	38139175	FALSE	278	-0.217595572850614	44	20704713	38137253	0.345317016959666	3	1	0.345317016959666	3	1	17432540	2	29	27	3	FALSE	GAIN	PASS
659_bTo_pair	TBC1D10A	22	30291990	30327046	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	11	0	FALSE	CNLOH	PASS
659_bTo_pair	TBC1D10B	16	30357102	30370264	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	TBC1D10C	11	67403915	67410089	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	11	3	FALSE	GAIN	PASS
659_bTo_pair	TBC1D12	10	94402504	94535930	FALSE	662	-0.410954559094016	36	89715119	94762760	0.365165917639896	2	0	0.365165917639896	2	0	5047641	2	33	16	0	FALSE	CNLOH	PASS
659_bTo_pair	TBC1D13	9	128787204	128810432	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	TBC1D14	4	6909242	7033118	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	19	0	FALSE	GAIN	PASS
659_bTo_pair	TBC1D15	12	71839707	71927248	FALSE	792	-0.349776929755415	43	71610399	76348235	0.192136715055622	3	NA	0.192136715055622	3	NA	4737836	NA	18	19	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TBC1D16	17	79932343	80035848	FALSE	1081	-0.503130193321286	34	78873805	80288187	NA	2	NA	NA	2	NA	1414382	NA	19	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TBC1D17	19	49877425	49888749	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	18	2	FALSE	HETLOSS	PASS
659_bTo_pair	TBC1D19	4	26576437	26755351	FALSE	278	-0.217595572850614	44	20704713	38137253	0.345317016959666	3	1	0.345317016959666	3	1	17432540	2	29	21	2	FALSE	GAIN	PASS
659_bTo_pair	TBC1D2	9	98198999	98255721	FALSE	608	-0.541405085979946	27	95522076	99069752	1	2	1	1	2	1	3547676	1	31	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	TBC1D20	20	435480	462553	FALSE	1195	-0.60512265366003	23	87765	1537211	0.186356639256811	1	0	0.186356639256811	1	0	1449446	1	33	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	TBC1D21	15	73873608	73889214	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	TBC1D22A	22	46762617	47175699	FALSE	1271	-0.350898193716427	41	45922979	50285791	0.284729887459054	3	0	0.284729887459054	3	0	4362812	3	30	15	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	TBC1D22B	6	37257772	37332970	FALSE	397	-0.509151429367598	27	37213022	41687167	1	2	1	1	2	1	4474145	1	33	14	2	FALSE	DIPLOID	PASS
659_bTo_pair	TBC1D23	3	100261000	100325251	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	20	1	FALSE	GAIN	PASS
659_bTo_pair	TBC1D24	16	2475051	2509560	FALSE	942	-0.803500535593988	16	2178660	2530995	0.365165917639896	1	0	0.365165917639896	1	0	352335	1	18	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	TBC1D25	23	48539457	48562609	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	11	0	FALSE	AMP (many states)	PASS
659_bTo_pair	TBC1D26	17	15732247	15749192	FALSE	1009	-0.493836167698037	33	12666172	16027364	0.344071079426502	2	0	0.344071079426502	2	0	3361192	2	21	9	2	FALSE	CNLOH	PASS
659_bTo_pair	TBC1D28	17	18635006	18661950	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	7	1	FALSE	CNLOH	PASS
659_bTo_pair	TBC1D29	17	30553502	30563493	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	TBC1D2B	15	77984036	78077724	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	TBC1D30	12	64780516	64881032	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	TBC1D31	8	123041968	123152153	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	24	1	FALSE	GAIN	PASS
659_bTo_pair	TBC1D32	6	121079494	121334745	FALSE	421	-0.534093125771784	29	117482879	126348569	NA	2	NA	NA	2	NA	8865690	NA	29	32	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TBC1D3B	17	36165681	36176636	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	6	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TBC1D4	13	75283503	75482114	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	29	3	FALSE	CNLOH	PASS
659_bTo_pair	TBC1D5	3	17157162	18444817	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	43	2	FALSE	HETLOSS	PASS
659_bTo_pair	TBC1D7	6	13266542	13328583	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	16	2	FALSE	DIPLOID	PASS
659_bTo_pair	TBC1D8	2	101007617	101252866	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	26	3	FALSE	DIPLOID	PASS
659_bTo_pair	TBC1D8B	23	106802680	106876145	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	26	0	FALSE	AMP (many states)	PASS
659_bTo_pair	TBC1D9	4	140620765	140756120	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	25	2	FALSE	DIPLOID	PASS
659_bTo_pair	TBC1D9B	5	179862066	179907859	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	29	0	FALSE	HETLOSS	PASS
659_bTo_pair	TBCA	5	77691166	77868780	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	TBCB	19	36114289	36125947	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	TBCC	6	42744481	42746096	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	TBCCD1	3	186546073	186570543	FALSE	263	-0.396590537714608	39	186161612	186743777	NA	2	NA	NA	2	NA	582165	NA	9	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TBCD	17	82752064	82945922	FALSE	1085	-0.607666454607286	26	82405295	83094473	NA	2	NA	NA	2	NA	689178	NA	13	48	6	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TBCE	1	235328570	235452443	FALSE	82	-0.550278310688863	27	235196044	241494870	1	2	1	1	2	1	6298826	1	22	23	1	FALSE	DIPLOID	PASS
659_bTo_pair	TBCEL	11	121024072	121090775	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	TBCK	4	106041599	106321495	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	26	0	FALSE	DIPLOID	PASS
659_bTo_pair	TBK1	12	64451880	64502108	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	20	1	FALSE	DIPLOID	PASS
659_bTo_pair	TBKBP1	17	47694081	47712050	FALSE	1046	-0.746772159255206	19	45395806	47696360	0.365165917639896	1	0	0.365165917639896	1	0	2300554	1	26	12	0	TRUE	HETLOSS	PASS
659_bTo_pair	TBL1X	23	9463295	9741037	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	18	1	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	TBL1XR1	3	177019340	177228000	TRUE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	15	1	FALSE	GAIN	PASS
659_bTo_pair	TBL2	7	73567533	73578791	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	TBL3	16	1972037	1982933	FALSE	938	-0.541386594301884	29	1947002	2038739	NA	2	NA	NA	2	NA	91737	NA	11	26	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TBP	6	170554302	170572870	FALSE	449	-0.520973998932362	27	167374374	170584540	1	2	1	1	2	1	3210166	1	18	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	TBPL1	6	133952170	133990432	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	TBPL2	14	55413541	55456726	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	TBR1	2	161416094	161425870	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	TBRG1	11	124622836	124635398	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	TBRG4	7	45100100	45112047	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	14	4	FALSE	GAIN	PASS
659_bTo_pair	TBX1	22	19756703	19783593	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	14	3	FALSE	CNLOH	PASS
659_bTo_pair	TBX10	11	67631303	67639560	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	9	1	FALSE	GAIN	PASS
659_bTo_pair	TBX15	1	118883046	118989556	FALSE	43	-0.890933866500247	13	117628427	119906570	0.365165917639896	1	0	0.365165917639896	1	0	2278143	1	13	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	TBX18	6	84687351	84764519	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	TBX19	1	168281040	168314426	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	TBX2	17	61399896	61409466	FALSE	1062	-0.555528439510251	26	60671378	61590660	NA	2	NA	NA	2	NA	919282	NA	4	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TBX20	7	35202430	35254147	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	9	2	FALSE	GAIN	PASS
659_bTo_pair	TBX21	17	47733244	47746119	FALSE	1048	1.65052761695234	96	47733473	47809385	0.364342740527346	20	NA	0.364342740527346	20	NA	75912	NA	2	12	2	FALSE	AMP	PASS
659_bTo_pair	TBX22	23	80014756	80031769	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	10	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	TBX3	12	114670254	114684164	TRUE	807	1.87405892104781	100	114670331	115963450	0.364342740527346	24	NA	0.364342740527346	24	NA	1293119	NA	2	22	4	FALSE	AMP	PASS
659_bTo_pair	TBX4	17	61452404	61485110	FALSE	1062	-0.555528439510251	26	60671378	61590660	NA	2	NA	NA	2	NA	919282	NA	4	10	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TBX5	12	114353931	114408442	FALSE	806	-0.481242901669781	30	113099979	114403736	1	2	1	1	2	1	1303757	1	13	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	TBX6	16	30085793	30091887	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	TBXA2R	19	3594506	3606840	FALSE	1122	-0.653400653967241	21	3157829	4037863	0.140309795179477	0	0	0.140309795179477	0	0	880034	0	27	7	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TBXAS1	7	139777051	140020325	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	16	2	FALSE	DIPLOID	PASS
659_bTo_pair	TBXT	6	166157656	166168700	FALSE	447	-0.721809212356928	19	165280135	167033904	0.365165917639896	1	0	0.365165917639896	1	0	1753769	1	11	11	2	FALSE	HETLOSS	PASS
659_bTo_pair	TC2N	14	91779751	91867536	FALSE	870	-0.471399657488227	30	81180359	92000019	1	2	1	1	2	1	10819660	1	29	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	TCAF1	7	143851375	143902198	FALSE	504	-0.812834819860627	15	143573123	148800568	0.21938209893867	0	0	0.21938209893867	0	0	5227445	0	25	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TCAF2	7	143620952	143730409	FALSE	504	-0.812834819860627	15	143573123	148800568	0.21938209893867	0	0	0.21938209893867	0	0	5227445	0	25	7	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TCAIM	3	44338119	44409451	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	TCAP	17	39664187	39666555	FALSE	1026	-0.886931394907893	13	39564387	39685917	0.365165917639896	1	0	0.365165917639896	1	0	121530	1	7	3	1	FALSE	HETLOSS	PASS
659_bTo_pair	TCEA1	8	53966552	54022529	FALSE	543	-0.403572692824667	39	47962754	54147613	NA	2	NA	NA	2	NA	6184859	NA	18	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TCEA2	20	64049836	64072347	FALSE	1225	-0.32421417626258	43	63733191	64273510	0.192136715055622	3	NA	0.192136715055622	3	NA	540319	NA	22	10	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	TCEA3	1	23381061	23424740	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	TCEAL1	23	103628704	103630953	FALSE	1322	0.637402044390066	71	103500209	103630133	0.364342740527346	8	NA	0.364342740527346	8	NA	129924	NA	4	2	0	TRUE	INDETERMINATE	PASS
659_bTo_pair	TCEAL2	23	102125688	102127711	FALSE	1321	0.439394403838451	66	101391440	103377786	0.364342740527346	7	NA	0.364342740527346	7	NA	1986346	NA	34	3	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	TCEAL3	23	103607451	103629690	FALSE	1322	0.637402044390066	71	103500209	103630133	0.364342740527346	8	NA	0.364342740527346	8	NA	129924	NA	4	3	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	TCEAL4	23	103576231	103587736	FALSE	1322	0.637402044390066	71	103500209	103630133	0.364342740527346	8	NA	0.364342740527346	8	NA	129924	NA	4	6	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	TCEAL5	23	103273691	103276872	FALSE	1321	0.439394403838451	66	101391440	103377786	0.364342740527346	7	NA	0.364342740527346	7	NA	1986346	NA	34	3	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	TCEAL6	23	102140476	102142970	FALSE	1321	0.439394403838451	66	101391440	103377786	0.364342740527346	7	NA	0.364342740527346	7	NA	1986346	NA	34	2	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	TCEAL7	23	103330196	103332326	FALSE	1321	0.439394403838451	66	101391440	103377786	0.364342740527346	7	NA	0.364342740527346	7	NA	1986346	NA	34	2	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	TCEAL8	23	103252995	103255203	FALSE	1321	0.439394403838451	66	101391440	103377786	0.364342740527346	7	NA	0.364342740527346	7	NA	1986346	NA	34	2	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	TCEAL9	23	103356489	103358462	FALSE	1321	0.439394403838451	66	101391440	103377786	0.364342740527346	7	NA	0.364342740527346	7	NA	1986346	NA	34	2	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	TCEANC	23	13653189	13681964	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	5	2	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	TCEANC2	1	54053584	54112519	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	TCERG1	5	146447311	146511961	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	23	0	FALSE	HETLOSS	PASS
659_bTo_pair	TCERG1L	10	131092391	131311721	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	12	2	FALSE	CNLOH	PASS
659_bTo_pair	TCF12	15	56918623	57299281	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	23	0	FALSE	HETLOSS	PASS
659_bTo_pair	TCF15	20	603797	610398	FALSE	1195	-0.60512265366003	23	87765	1537211	0.186356639256811	1	0	0.186356639256811	1	0	1449446	1	33	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	TCF19	6	31158542	31167159	FALSE	379	-0.524744136561063	27	30546321	31270541	1	2	1	1	2	1	724220	1	30	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	TCF20	22	42160013	42343616	FALSE	1269	-0.443951758803067	34	41205309	42514754	NA	2	NA	NA	2	NA	1309445	NA	31	26	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TCF21	6	133889138	133895553	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	TCF23	2	27149004	27156974	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	TCF24	8	66946501	66962590	FALSE	550	-0.186881774239562	48	60208949	67746087	0.365165917639896	3	NA	0.365165917639896	3	NA	7537138	NA	33	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TCF25	16	89873570	89913627	FALSE	993	-0.673014862380027	22	89828600	89919507	0.291335969972972	1	0	0.291335969972972	1	0	90907	1	4	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	TCF3	19	1609290	1652605	TRUE	1117	1.60042056965448	93	1609268	1775207	0.364342740527346	19	NA	0.364342740527346	19	NA	165939	NA	2	30	3	FALSE	AMP	PASS
659_bTo_pair	TCF4	18	55222331	55664787	FALSE	1105	-0.785555027616249	16	52752095	58670682	0.365165917639896	1	0	0.365165917639896	1	0	5918587	1	19	24	2	FALSE	HETLOSS	PASS
659_bTo_pair	TCF7	5	134114711	134151865	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	TCF7L1	2	85133410	85310388	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	TCF7L2	10	112950250	113167678	TRUE	672	1.52979051493717	91	112950260	113167691	0.364342740527346	18	NA	0.364342740527346	18	NA	217431	NA	1	29	1	FALSE	AMP	PASS
659_bTo_pair	TCFL5	20	62841115	62861763	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	TCHH	1	152106317	152115454	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	24	2	FALSE	DIPLOID	PASS
659_bTo_pair	TCHHL1	1	152084144	152089064	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	TCHP	12	109900264	109983841	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	30	0	FALSE	DIPLOID	PASS
659_bTo_pair	TCIM	8	40153455	40155308	FALSE	536	-0.812766686991614	14	38512585	41896345	0.365165917639896	1	0	0.365165917639896	1	0	3383760	1	19	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	TCIRG1	11	68039016	68050895	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	19	1	FALSE	GAIN	PASS
659_bTo_pair	TCL1A	14	95709967	95714196	FALSE	875	1.77673254901969	98	95686483	95714218	0.364342740527346	22	NA	0.364342740527346	22	NA	27735	NA	2	7	2	FALSE	AMP	PASS
659_bTo_pair	TCL1B	14	95686417	95692643	FALSE	875	1.77673254901969	98	95686483	95714218	0.364342740527346	22	NA	0.364342740527346	22	NA	27735	NA	2	7	1	FALSE	AMP	PASS
659_bTo_pair	TCN1	11	59852800	59866575	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	9	0	FALSE	GAIN	PASS
659_bTo_pair	TCN2	22	30606838	30627278	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	9	1	FALSE	CNLOH	PASS
659_bTo_pair	TCOF1	5	150357629	150400308	FALSE	348	-0.944402178600545	11	150166869	150399003	0.289956079954009	0	0	0.289956079954009	0	0	232134	0	5	34	0	FALSE	HOMDEL	PASS
659_bTo_pair	TCP1	6	159778498	159789749	FALSE	444	-0.505238631103688	30	158776425	160753038	1	2	1	1	2	1	1976613	1	17	14	2	FALSE	DIPLOID	PASS
659_bTo_pair	TCP10	6	167357031	167384510	FALSE	448	-0.0954555878575429	53	167040062	167373262	0.273255132087987	4	NA	0.273255132087987	4	NA	333200	NA	7	6	2	TRUE	GAIN (many states)	PASS
659_bTo_pair	TCP10L	21	32574841	32587373	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	5	2	FALSE	DIPLOID	PASS
659_bTo_pair	TCP10L2	6	167146414	167196913	FALSE	448	-0.0954555878575429	53	167040062	167373262	0.273255132087987	4	NA	0.273255132087987	4	NA	333200	NA	7	10	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	TCP11	6	35118071	35148610	FALSE	391	-0.499783837646083	34	33391964	35241176	NA	2	NA	NA	2	NA	1849212	NA	26	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TCP11L1	11	33039417	33105943	FALSE	692	-0.391103687852083	35	32583952	33774394	1	2	1	1	2	1	1190442	1	13	23	2	FALSE	DIPLOID	PASS
659_bTo_pair	TCP11L2	12	106301929	106347015	FALSE	799	2.16615713574354	107	106063423	106314403	0.364342740527346	30	NA	0.364342740527346	30	NA	250980	NA	3	11	0	TRUE	AMP	PASS
659_bTo_pair	TCP11X2	23	102456862	102471842	FALSE	1321	0.439394403838451	66	101391440	103377786	0.364342740527346	7	NA	0.364342740527346	7	NA	1986346	NA	34	1	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	TCTA	3	49412206	49416475	FALSE	217	1.43233135236461	88	49359318	49412651	0.364342740527346	17	NA	0.364342740527346	17	NA	53333	NA	2	4	1	TRUE	AMP	PASS
659_bTo_pair	TCTE1	6	44278743	44297688	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	TCTE3	6	169740114	169751587	FALSE	449	-0.520973998932362	27	167374374	170584540	1	2	1	1	2	1	3210166	1	18	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	TCTEX1D1	1	66752459	66778787	FALSE	23	-0.326404897444941	43	65224778	71080923	0.192136715055622	3	NA	0.192136715055622	3	NA	5856145	NA	29	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TCTEX1D2	3	196291219	196318299	FALSE	271	-0.194588974812627	47	196198492	198169864	0.365165917639896	3	1	0.365165917639896	3	1	1971372	2	29	5	0	FALSE	GAIN	PASS
659_bTo_pair	TCTEX1D4	1	44805913	44806675	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	TCTN1	12	110614027	110649430	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	TCTN2	12	123671113	123708403	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	18	3	FALSE	DIPLOID	PASS
659_bTo_pair	TCTN3	10	95663396	95694143	FALSE	663	-0.556688707084635	24	94775074	96952170	0.359751661895656	2	0	0.359751661895656	2	0	2177096	2	21	15	1	FALSE	CNLOH	PASS
659_bTo_pair	TDG	12	103965804	103988874	FALSE	798	-0.492720037723834	34	102839233	105367537	NA	2	NA	NA	2	NA	2528304	NA	20	10	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TDGF1	3	46574534	46582463	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	TDO2	4	155854738	155920406	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	TDP1	14	89954939	90044768	FALSE	870	-0.471399657488227	30	81180359	92000019	1	2	1	1	2	1	10819660	1	29	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	TDP2	6	24649977	24667033	FALSE	373	-0.695027086668472	22	24174718	26017145	0.291335969972972	1	0	0.291335969972972	1	0	1842427	1	23	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	TDRD1	10	114179270	114232304	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	29	0	FALSE	CNLOH	PASS
659_bTo_pair	TDRD10	1	154502219	154548147	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	TDRD12	19	32719753	32829580	FALSE	1165	-0.570153591761829	23	29923697	33225768	0.186356639256811	1	0	0.186356639256811	1	0	3302071	1	18	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	TDRD15	2	21123917	21143272	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	22	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TDRD3	13	60396457	60573878	FALSE	836	-0.444239733377228	32	50956423	72747004	0.365165917639896	2	0	0.365165917639896	2	0	21790581	2	40	16	0	FALSE	CNLOH	PASS
659_bTo_pair	TDRD5	1	179591613	179691272	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	19	5	FALSE	DIPLOID	PASS
659_bTo_pair	TDRD6	6	46687875	46704319	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	27	0	FALSE	DIPLOID	PASS
659_bTo_pair	TDRD7	9	97411950	97496125	FALSE	608	-0.541405085979946	27	95522076	99069752	1	2	1	1	2	1	3547676	1	31	23	3	FALSE	DIPLOID	PASS
659_bTo_pair	TDRD9	14	103928462	104052667	FALSE	883	-0.69016701050987	21	103712930	104759455	0.140309795179477	0	0	0.140309795179477	0	0	1046525	0	14	42	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TDRKH	1	151770107	151791416	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	TDRP	8	489792	545781	FALSE	510	-0.906181747703467	12	166288	7823395	0.365165917639896	1	0	0.365165917639896	1	0	7657107	1	48	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	TEAD1	11	12674591	12944483	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	11	2	FALSE	DIPLOID	PASS
659_bTo_pair	TEAD2	19	49340595	49362457	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	TEAD3	6	35473597	35497076	FALSE	392	-0.183129995366178	48	35241630	35475885	0.365165917639896	3	NA	0.365165917639896	3	NA	234255	NA	7	12	0	TRUE	GAIN (many states)	PASS
659_bTo_pair	TEAD4	12	2959330	3040673	FALSE	739	-0.369471841682825	39	1104785	3873202	NA	2	NA	NA	2	NA	2768417	NA	20	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TEC	4	48135783	48269864	FALSE	282	-0.204234033978701	47	41752697	49032685	0.365165917639896	3	1	0.365165917639896	3	1	7279988	2	31	17	0	FALSE	GAIN	PASS
659_bTo_pair	TECPR1	7	98214624	98252251	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	29	0	FALSE	HETLOSS	PASS
659_bTo_pair	TECPR2	14	102362963	102502481	FALSE	878	-0.78309571727566	16	102193484	102726534	0.365165917639896	1	0	0.365165917639896	1	0	533050	1	7	25	0	FALSE	HETLOSS	PASS
659_bTo_pair	TECR	19	14517085	14565980	FALSE	1148	2.41960820929952	112	14514798	14560134	0.364342740527346	37	NA	0.364342740527346	37	NA	45336	NA	2	32	0	TRUE	AMP	PASS
659_bTo_pair	TECRL	4	64275257	64409468	FALSE	285	-0.676685623676823	22	55346376	64409389	0.291335969972972	1	0	0.291335969972972	1	0	9063013	1	23	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	TECTA	11	121101173	121191493	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	38	0	FALSE	DIPLOID	PASS
659_bTo_pair	TECTB	10	112283400	112305035	FALSE	671	-0.443752838916331	34	110781853	112815244	NA	2	NA	NA	2	NA	2033391	NA	10	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TEDC1	14	105489855	105499575	FALSE	885	-0.488568816150345	30	104868462	105529782	1	2	1	1	2	1	661320	1	18	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	TEDC2	16	2460080	2464963	FALSE	942	-0.803500535593988	16	2178660	2530995	0.365165917639896	1	0	0.365165917639896	1	0	352335	1	18	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	TEDDM1	1	182398117	182400616	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	TEF	22	41367333	41399326	FALSE	1269	-0.443951758803067	34	41205309	42514754	NA	2	NA	NA	2	NA	1309445	NA	31	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TEFM	17	30897336	30906820	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	TEK	9	27109141	27230175	FALSE	585	-0.464842894155678	32	22447079	32572950	0.365165917639896	2	0	0.365165917639896	2	0	10125871	2	19	26	2	FALSE	CNLOH	PASS
659_bTo_pair	TEKT1	17	6789133	6831761	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	7	2	FALSE	HETLOSS	PASS
659_bTo_pair	TEKT2	1	36084075	36088275	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	TEKT3	17	15303811	15341641	FALSE	1009	-0.493836167698037	33	12666172	16027364	0.344071079426502	2	0	0.344071079426502	2	0	3361192	2	21	9	3	FALSE	CNLOH	PASS
659_bTo_pair	TEKT4	2	94871433	94876829	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	TEKT5	16	10627501	10694945	FALSE	950	-0.703992637019778	22	10431373	10818487	0.291335969972972	1	0	0.291335969972972	1	0	387114	1	5	10	3	FALSE	HETLOSS	PASS
659_bTo_pair	TELO2	16	1493344	1510457	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	23	6	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TEN1	17	75979220	76000586	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	TEN1-CDK3	17	75979231	76005999	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	TENM1	23	124375903	124963817	FALSE	1330	1.75700231074177	98	123733010	124378275	0.364342740527346	22	NA	0.364342740527346	22	NA	645265	NA	6	52	0	TRUE	AMP	PASS
659_bTo_pair	TENM2	5	167284799	168264157	FALSE	356	-0.773912908266316	17	162095550	171298806	0.365165917639896	1	0	0.365165917639896	1	0	9203256	1	21	46	2	FALSE	HETLOSS	PASS
659_bTo_pair	TENM3	4	182143987	182803024	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	44	3	FALSE	HETLOSS	PASS
659_bTo_pair	TENM4	11	78652831	79440948	FALSE	712	-0.188800010767045	48	77590086	86068715	0.365165917639896	3	NA	0.365165917639896	3	NA	8478629	NA	30	50	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	TENT2	5	79612120	79686648	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	TENT4A	5	6713007	6757048	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	12	1	FALSE	GAIN	PASS
659_bTo_pair	TENT4B	16	50152918	50235310	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	TENT5A	6	81491439	81752774	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	TENT5B	1	27005020	27012836	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	TENT5C	1	117605934	117628372	TRUE	42	0.76522880740187	74	117522929	117628167	0.364342740527346	9	NA	0.364342740527346	9	NA	105238	NA	2	22	3	FALSE	INDETERMINATE	PASS
659_bTo_pair	TENT5D	23	80335504	80445311	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	5	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	TEP1	14	20365667	20413429	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	59	5	FALSE	DIPLOID	PASS
659_bTo_pair	TEPP	16	57976435	57988116	FALSE	972	-0.499158643645776	34	57931773	64947842	NA	2	NA	NA	2	NA	7016069	NA	18	9	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TEPSIN	17	81228277	81239091	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	TERB1	16	66754976	66801620	FALSE	973	-0.642771892390385	26	64948130	66912568	NA	2	NA	NA	2	NA	1964438	NA	17	18	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TERB2	15	44956702	44979229	FALSE	904	-0.666047806656427	20	44736698	49422632	0.365165917639896	1	0	0.365165917639896	1	0	4685934	1	30	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	TERF1	8	73008864	73048122	FALSE	553	-0.248188717260806	46	68331252	73878866	0.298322295679939	3	NA	0.298322295679939	3	NA	5547614	NA	20	11	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TERF2	16	69355561	69408571	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TERF2IP	16	75647786	75761872	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	TERT	5	1253147	1295069	FALSE	309	1.3135337412135	86	1253168	1295669	0.364342740527346	15	NA	0.364342740527346	15	NA	42501	NA	1	25	2	FALSE	AMP	PASS
659_bTo_pair	TES	7	116210493	116258783	FALSE	488	-0.464127371400283	34	107070260	116559206	NA	2	NA	NA	2	NA	9488946	NA	33	8	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TESC	12	117038923	117099479	FALSE	808	-0.531025796359709	27	115966146	120090026	1	2	1	1	2	1	4123880	1	23	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	TESK1	9	35605305	35610041	FALSE	590	0.518634267342274	67	35107891	35683151	0.364342740527346	7	2	0.364342740527346	7	2	575260	5	11	13	1	FALSE	AMP	PASS
659_bTo_pair	TESK2	1	45343883	45491166	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	TESMIN	11	68707440	68751564	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	11	0	FALSE	GAIN	PASS
659_bTo_pair	TESPA1	12	54948018	54984746	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	TET1	10	68560656	68694482	TRUE	650	1.71716637140298	97	68560524	68699522	0.364342740527346	21	NA	0.364342740527346	21	NA	138998	NA	1	45	2	FALSE	AMP	PASS
659_bTo_pair	TET2	4	105145875	105279816	TRUE	293	2.25333540174892	109	105140951	105279798	0.364342740527346	32	NA	0.364342740527346	32	NA	138847	NA	1	64	3	FALSE	AMP	PASS
659_bTo_pair	TET3	2	73986404	74108176	TRUE	121	2.03358837001177	104	73985001	74108115	0.364342740527346	27	NA	0.364342740527346	27	NA	123114	NA	1	51	2	FALSE	AMP	PASS
659_bTo_pair	TEX10	9	100302077	100352939	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	19	2	FALSE	DIPLOID	PASS
659_bTo_pair	TEX101	19	43401496	43418597	FALSE	1179	-0.582084941516902	26	42297317	43535595	NA	2	NA	NA	2	NA	1238278	NA	25	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TEX11	23	70528940	70908731	FALSE	1312	-0.583566373278672	26	70452612	70907739	NA	2	NA	NA	2	NA	455127	NA	2	29	5	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TEX12	11	112167372	112172559	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	TEX13A	23	105218929	105220674	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	6	0	FALSE	AMP (many states)	PASS
659_bTo_pair	TEX13B	23	107980864	107982370	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	TEX13C	23	125320120	125325214	FALSE	1332	1.14642858197369	83	125320240	126552560	0.364342740527346	13	NA	0.364342740527346	13	NA	1232320	NA	3	10	0	FALSE	AMP	PASS
659_bTo_pair	TEX13D	23	124246249	124336862	FALSE	1330	1.75700231074177	98	123733010	124378275	0.364342740527346	22	NA	0.364342740527346	22	NA	645265	NA	6	15	3	FALSE	AMP	PASS
659_bTo_pair	TEX14	17	58556678	58692055	FALSE	1058	-0.423419268198233	34	58422367	59890994	NA	2	NA	NA	2	NA	1468627	NA	20	36	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TEX15	8	30831544	30913003	FALSE	524	-0.752404429217175	19	29337070	31032666	0.365165917639896	1	0	0.365165917639896	1	0	1695596	1	13	42	0	FALSE	HETLOSS	PASS
659_bTo_pair	TEX19	17	82359247	82363776	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	TEX2	17	64147227	64263301	FALSE	1066	-0.447707994366894	34	63941413	64859452	NA	2	NA	NA	2	NA	918039	NA	12	19	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TEX22	14	105398579	105450106	FALSE	885	-0.488568816150345	30	104868462	105529782	1	2	1	1	2	1	661320	1	18	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	TEX26	13	30932703	30975502	FALSE	828	-0.893717680890687	13	28659152	32311865	0.365165917639896	1	0	0.365165917639896	1	0	3652713	1	17	7	2	FALSE	HETLOSS	PASS
659_bTo_pair	TEX261	2	70985938	70994945	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	6	3	FALSE	DIPLOID	PASS
659_bTo_pair	TEX264	3	51662693	51704323	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	TEX29	13	111316184	111344249	FALSE	844	-0.576217954819194	24	110150427	113263496	0.359751661895656	2	0	0.359751661895656	2	0	3113069	2	19	6	1	FALSE	CNLOH	PASS
659_bTo_pair	TEX30	13	102765990	102773811	FALSE	840	-0.335776033141145	43	102193037	102839809	0.192136715055622	3	NA	0.192136715055622	3	NA	646772	NA	9	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TEX33	22	36991120	37007841	FALSE	1263	-0.528184158498335	29	36991204	37967644	NA	2	NA	NA	2	NA	976440	NA	31	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TEX35	1	178513077	178548602	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	TEX36	10	125576522	125683144	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	6	0	FALSE	CNLOH	PASS
659_bTo_pair	TEX37	2	88524651	88529584	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	TEX38	1	46668855	46673594	FALSE	16	-0.485631979032023	30	46175602	48453048	1	2	1	1	2	1	2277446	1	32	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	TEX43	5	126631722	126636287	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	TEX44	2	231592901	231594283	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	TEX45	19	7492976	7508450	FALSE	1130	-0.690953718254595	21	7440128	7870576	0.140309795179477	0	0	0.140309795179477	0	0	430448	0	25	10	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TEX46	1	23010834	23015850	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	TEX47	7	88794106	88795721	FALSE	479	-0.448308050861149	30	87602941	92590330	1	2	1	1	2	1	4987389	1	30	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	TEX48	9	114666434	114682066	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	TEX49	12	48727435	48765786	FALSE	768	-0.491963868457131	34	48045387	49018767	NA	2	NA	NA	2	NA	973380	NA	28	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TEX50	1	173635333	173637134	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	TEX51	2	126898864	126902097	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	TEX53	9	114656304	114662374	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	TEX9	15	56244009	56445997	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	TF	3	133745956	133796640	FALSE	242	-0.32037413513609	40	130560427	134790274	0.308149309490068	3	1	0.308149309490068	3	1	4229847	2	29	17	0	FALSE	GAIN	PASS
659_bTo_pair	TFAM	10	58385022	58399221	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	7	0	FALSE	CNLOH	PASS
659_bTo_pair	TFAP2A	6	10393186	10419659	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	TFAP2B	6	50818723	50847613	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	TFAP2C	20	56629302	56639283	FALSE	1221	-0.44936578355072	34	56249153	58715213	NA	2	NA	NA	2	NA	2466060	NA	27	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TFAP2D	6	50713828	50772988	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	TFAP2E	1	35573370	35595328	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	TFAP4	16	4257186	4273075	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	TFB1M	6	155257509	155314493	FALSE	440	-0.500001062559341	30	152129628	156771069	1	2	1	1	2	1	4641441	1	14	10	2	FALSE	DIPLOID	PASS
659_bTo_pair	TFB2M	1	246540560	246566324	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	TFCP2	12	51093663	51173134	FALSE	772	-0.61197679162419	26	50109466	51920864	NA	2	NA	NA	2	NA	1811398	NA	27	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TFCP2L1	2	121216587	121285207	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	TFDP1	13	113584721	113641470	FALSE	846	-0.38711803760524	39	113325636	114000814	NA	2	NA	NA	2	NA	675178	NA	11	12	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TFDP2	3	141944428	142149544	FALSE	246	-0.322519280750539	43	139344000	142447976	0.192136715055622	3	NA	0.192136715055622	3	NA	3103976	NA	19	13	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	TFDP3	23	133216669	133218348	FALSE	1335	0.100243493544559	59	130066940	134244999	0.308533751035793	5	NA	0.308533751035793	5	NA	4178059	NA	21	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	TFE3	23	49028726	49043486	FALSE	1297	2.39549455193678	112	49028973	49043321	0.364342740527346	36	NA	0.364342740527346	36	NA	14348	NA	1	38	0	FALSE	AMP	PASS
659_bTo_pair	TFEB	6	41683978	41736259	FALSE	397	-0.509151429367598	27	37213022	41687167	1	2	1	1	2	1	4474145	1	33	18	2	TRUE	DIPLOID	PASS
659_bTo_pair	TFEC	7	115935148	116159896	FALSE	488	-0.464127371400283	34	107070260	116559206	NA	2	NA	NA	2	NA	9488946	NA	33	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TFF1	21	42362282	42366594	FALSE	1234	-0.544212636077936	27	41740855	44141314	1	2	1	1	2	1	2400459	1	31	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	TFF2	21	42346357	42351128	FALSE	1234	-0.544212636077936	27	41740855	44141314	1	2	1	1	2	1	2400459	1	31	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	TFF3	21	42311667	42315651	FALSE	1234	-0.544212636077936	27	41740855	44141314	1	2	1	1	2	1	2400459	1	31	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	TFG	3	100709331	100748966	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	9	1	FALSE	GAIN	PASS
659_bTo_pair	TFIP11	22	26491225	26512505	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	19	0	FALSE	CNLOH	PASS
659_bTo_pair	TFPI	2	187464230	187565760	FALSE	159	-0.50094907723407	34	185815441	189771912	NA	2	NA	NA	2	NA	3956471	NA	17	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TFPI2	7	93885396	93890991	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	TFPT	19	54107013	54115675	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	TFR2	7	100620416	100642779	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	19	1	FALSE	HETLOSS	PASS
659_bTo_pair	TFRC	3	196027183	196082189	FALSE	270	1.36446716112499	87	195892472	196082117	0.364342740527346	16	NA	0.364342740527346	16	NA	189645	NA	2	34	0	FALSE	AMP	PASS
659_bTo_pair	TG	8	132866958	133134903	FALSE	565	-0.282741903777565	44	129748604	134610527	0.345317016959666	3	1	0.345317016959666	3	1	4861923	2	18	66	5	FALSE	GAIN	PASS
659_bTo_pair	TGDS	13	94574051	94596257	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	12	0	FALSE	CNLOH	PASS
659_bTo_pair	TGFA	2	70447280	70554193	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	TGFB1	19	41301587	41353911	FALSE	1175	-0.78792654264608	16	41264609	41322635	0.365165917639896	1	0	0.365165917639896	1	0	58026	1	3	26	0	TRUE	HETLOSS	PASS
659_bTo_pair	TGFB1I1	16	31471585	31477960	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	TGFB2	1	218346235	218444619	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	TGFB3	14	75958099	75982991	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	TGFBI	5	136028895	136063818	FALSE	336	-0.752536733071469	19	135941639	138575278	0.365165917639896	1	0	0.365165917639896	1	0	2633639	1	24	17	3	FALSE	HETLOSS	PASS
659_bTo_pair	TGFBR1	9	99104038	99154192	TRUE	609	1.73110001403399	97	99105196	99221522	0.364342740527346	22	NA	0.364342740527346	22	NA	116326	NA	2	32	0	FALSE	AMP	PASS
659_bTo_pair	TGFBR2	3	30606502	30694142	TRUE	206	1.75092128252002	98	29988233	30694157	0.364342740527346	22	NA	0.364342740527346	22	NA	705924	NA	2	22	0	FALSE	AMP	PASS
659_bTo_pair	TGFBR3	1	91680343	91906335	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	19	1	FALSE	DIPLOID	PASS
659_bTo_pair	TGFBR3L	19	7916145	7919097	FALSE	1132	-0.583194501817822	26	7916513	8843246	NA	2	NA	NA	2	NA	926733	NA	25	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TGFBRAP1	2	105264391	105330034	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	TGIF1	18	3411608	3459978	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	9	0	FALSE	GAIN	PASS
659_bTo_pair	TGIF2	20	36573488	36593950	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	TGIF2-RAB5IF	20	36574553	36612384	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	TGIF2LX	23	89921882	89922883	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	3	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	TGM1	14	24249114	24264432	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	TGM2	20	38127387	38166578	FALSE	1205	-0.619744376635615	23	37518926	41023791	0.186356639256811	1	0	0.186356639256811	1	0	3504865	1	19	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	TGM3	20	2296001	2341078	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	TGM4	3	44874608	44914990	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	16	4	FALSE	HETLOSS	PASS
659_bTo_pair	TGM5	15	43232595	43266857	FALSE	900	-0.777056562410308	17	42718512	43401817	0.365165917639896	1	0	0.365165917639896	1	0	683305	1	13	14	2	FALSE	HETLOSS	PASS
659_bTo_pair	TGM6	20	2380908	2432753	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	16	1	FALSE	HETLOSS	PASS
659_bTo_pair	TGM7	15	43276280	43302255	FALSE	900	-0.777056562410308	17	42718512	43401817	0.365165917639896	1	0	0.365165917639896	1	0	683305	1	13	14	1	FALSE	HETLOSS	PASS
659_bTo_pair	TGOLN2	2	85318020	85328425	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	8	3	FALSE	DIPLOID	PASS
659_bTo_pair	TGS1	8	55773142	55825448	FALSE	545	0.0328509510438924	56	54463210	55824671	0.365165917639896	4	NA	0.365165917639896	4	NA	1361461	NA	4	18	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TH	11	2163929	2171877	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	THADA	2	43230836	43596046	FALSE	106	-0.392858868113437	39	42335725	46184779	NA	2	NA	NA	2	NA	3849054	NA	22	44	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	THAP1	8	42836674	42843325	FALSE	541	-0.815492706726597	16	42338595	47735321	0.365165917639896	1	0	0.365165917639896	1	0	5396726	1	15	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	THAP10	15	70881342	70892785	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	4	2	FALSE	HETLOSS	PASS
659_bTo_pair	THAP11	16	67842082	67844195	FALSE	979	-0.429457644119204	34	67645299	68698317	NA	2	NA	NA	2	NA	1053018	NA	33	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	THAP12	11	76349956	76380971	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	12	0	FALSE	GAIN	PASS
659_bTo_pair	THAP2	12	71663009	71680639	FALSE	792	-0.349776929755415	43	71610399	76348235	0.192136715055622	3	NA	0.192136715055622	3	NA	4737836	NA	18	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	THAP3	1	6624866	6635586	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	THAP4	2	241584405	241637449	FALSE	194	-0.588828356865968	23	240025214	241817025	0.186356639256811	1	0	0.186356639256811	1	0	1791811	1	34	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	THAP5	7	108554543	108569750	FALSE	488	-0.464127371400283	34	107070260	116559206	NA	2	NA	NA	2	NA	9488946	NA	33	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	THAP6	4	75513946	75550473	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	THAP7	22	20999104	21002196	FALSE	1245	1.49486089890038	90	20982486	21001309	0.364342740527346	18	NA	0.364342740527346	18	NA	18823	NA	2	6	0	TRUE	AMP	PASS
659_bTo_pair	THAP8	19	36034985	36054762	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	THAP9	4	82900684	82919969	FALSE	289	-0.397475195823872	39	80335777	83458331	NA	2	NA	NA	2	NA	3122554	NA	19	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	THBD	20	23045633	23049741	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	THBS1	15	39581079	39599466	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	24	0	FALSE	HETLOSS	PASS
659_bTo_pair	THBS2	6	169215780	169254044	FALSE	449	-0.520973998932362	27	167374374	170584540	1	2	1	1	2	1	3210166	1	18	27	3	FALSE	DIPLOID	PASS
659_bTo_pair	THBS3	1	155195588	155209051	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	25	0	FALSE	DIPLOID	PASS
659_bTo_pair	THBS4	5	79991311	80083287	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	22	1	FALSE	HETLOSS	PASS
659_bTo_pair	THEG	19	361747	376670	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	10	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	THEGL	4	56530609	56603507	FALSE	285	-0.676685623676823	22	55346376	64409389	0.291335969972972	1	0	0.291335969972972	1	0	9063013	1	23	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	THEM4	1	151873584	151909808	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	THEM5	1	151847263	151853697	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	THEM6	8	142727203	142736927	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	THEMIS	6	127708072	127918631	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	THEMIS2	1	27872543	27886685	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	THG1L	5	157731197	157741448	FALSE	353	-0.698571741790457	22	157138801	161546576	0.291335969972972	1	0	0.291335969972972	1	0	4407775	1	29	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	THNSL1	10	25016658	25026664	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	9	0	FALSE	CNLOH	PASS
659_bTo_pair	THNSL2	2	88170295	88186636	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	THOC1	18	214520	268050	FALSE	1086	-0.476374446097734	34	47412	500536	NA	2	NA	NA	2	NA	453124	NA	4	22	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	THOC2	23	123600561	123733056	FALSE	1329	-0.42573548551195	34	123184501	123712866	NA	2	NA	NA	2	NA	528365	NA	2	43	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	THOC3	5	175917873	176034680	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	THOC5	22	29505879	29555216	FALSE	1259	-0.52695279651924	29	29311622	29581007	NA	2	NA	NA	2	NA	269385	NA	7	19	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	THOC6	16	3024027	3027755	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	THOC7	3	63833870	63863903	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	9	0	TRUE	HETLOSS	PASS
659_bTo_pair	THOP1	19	2785460	2815807	FALSE	1120	-0.63588318052236	23	2233887	3062886	0.186356639256811	1	0	0.186356639256811	1	0	828999	1	28	15	2	FALSE	HETLOSS	PASS
659_bTo_pair	THPO	3	184371935	184381968	FALSE	259	-0.260370931250901	44	183654025	185254015	0.345317016959666	3	1	0.345317016959666	3	1	1599990	2	31	14	1	FALSE	GAIN	PASS
659_bTo_pair	THRA	17	40058290	40093867	FALSE	1030	-0.735138103765796	19	39868404	40278196	0.365165917639896	1	0	0.365165917639896	1	0	409792	1	14	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	THRAP3	1	36224416	36305357	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	THRB	3	24117153	24495756	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	THRSP	11	78063861	78068351	FALSE	712	-0.188800010767045	48	77590086	86068715	0.365165917639896	3	NA	0.365165917639896	3	NA	8478629	NA	30	2	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	THSD1	13	52377167	52416373	FALSE	836	-0.444239733377228	32	50956423	72747004	0.365165917639896	2	0	0.365165917639896	2	0	21790581	2	40	14	0	FALSE	CNLOH	PASS
659_bTo_pair	THSD4	15	71096952	71783383	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	24	0	FALSE	HETLOSS	PASS
659_bTo_pair	THSD7A	7	11370357	11832198	FALSE	456	-0.240618790532325	45	6028682	12688782	0.279823559258657	3	0	0.279823559258657	3	0	6660100	3	32	32	2	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	THSD7B	2	136765545	137677717	FALSE	145	-0.807795522727044	16	136882284	138780220	0.365165917639896	1	0	0.365165917639896	1	0	1897936	1	4	31	2	FALSE	HETLOSS	PASS
659_bTo_pair	THSD8	19	12802031	12813581	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	THTPA	14	23555988	23560271	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	THUMPD1	16	20702816	20742084	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	THUMPD2	2	39736060	39779267	FALSE	104	-0.491151156674762	34	39178660	42057603	NA	2	NA	NA	2	NA	2878943	NA	7	13	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	THUMPD3	3	9362842	9386791	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	THY1	11	119417378	119424985	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	THYN1	11	134248279	134253370	FALSE	734	-0.516486951202814	27	128842412	134387591	1	2	1	1	2	1	5545179	1	27	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	TIA1	2	70209444	70248660	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	TIAF1	17	29073521	29078857	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	TIAL1	10	119571802	119597029	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	13	0	FALSE	CNLOH	PASS
659_bTo_pair	TIAM1	21	31118416	31559977	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	33	1	FALSE	DIPLOID	PASS
659_bTo_pair	TIAM2	6	154832697	155257723	FALSE	440	-0.500001062559341	30	152129628	156771069	1	2	1	1	2	1	4641441	1	14	35	3	FALSE	DIPLOID	PASS
659_bTo_pair	TICAM1	19	4815932	4831704	FALSE	1124	-0.62008955817668	23	4168484	5151543	0.186356639256811	1	0	0.186356639256811	1	0	983059	1	28	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	TICAM2	5	115578650	115602479	FALSE	331	-0.706980197323045	20	112861366	122075379	0.365165917639896	1	0	0.365165917639896	1	0	9214013	1	31	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	TICRR	15	89575482	89631056	FALSE	925	-0.863518905667221	13	89317527	90079704	0.365165917639896	1	0	0.365165917639896	1	0	762177	1	14	40	0	FALSE	HETLOSS	PASS
659_bTo_pair	TIE1	1	43300993	43323108	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	25	0	FALSE	DIPLOID	PASS
659_bTo_pair	TIFA	4	112274542	112285903	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	TIFAB	5	135444218	135452399	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	TIGAR	12	4307763	4354593	FALSE	740	2.34844226201143	111	4270040	4445757	0.364342740527346	35	NA	0.364342740527346	35	NA	175717	NA	5	8	0	FALSE	AMP	PASS
659_bTo_pair	TIGD2	4	89111500	89114899	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	TIGD3	11	65354767	65357613	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	5	0	FALSE	GAIN	PASS
659_bTo_pair	TIGD4	4	152769354	152779764	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	TIGD5	8	143597835	143603224	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	TIGD6	5	149993118	150001167	FALSE	344	-0.892413249330443	13	149616577	150050506	0.365165917639896	1	0	0.365165917639896	1	0	433929	1	6	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	TIGD7	16	3298832	3305729	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	TIGIT	3	114276913	114310288	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	5	0	FALSE	GAIN	PASS
659_bTo_pair	TIMD4	5	156919282	156963255	FALSE	351	-0.617975601907695	26	154002251	157057925	NA	2	NA	NA	2	NA	3055674	NA	15	11	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TIMELESS	12	56416373	56449403	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	27	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TIMM10	11	57528463	57530803	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	2	0	FALSE	GAIN	PASS
659_bTo_pair	TIMM10B	11	6481447	6484679	FALSE	682	-0.308581000695747	43	6240079	6614875	0.192136715055622	3	NA	0.192136715055622	3	NA	374796	NA	15	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TIMM13	19	2425624	2427894	FALSE	1120	-0.63588318052236	23	2233887	3062886	0.186356639256811	1	0	0.186356639256811	1	0	828999	1	28	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	TIMM17A	1	201955491	201970661	FALSE	62	-0.579638700609711	26	201899486	202005559	NA	2	NA	NA	2	NA	106073	NA	3	6	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TIMM17B	23	48893447	48898143	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	7	0	FALSE	AMP (many states)	PASS
659_bTo_pair	TIMM21	18	74148511	74160530	FALSE	1111	-0.872352968035647	12	63331800	74584528	0.365165917639896	1	0	0.365165917639896	1	0	11252728	1	31	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	TIMM22	17	997117	1003671	FALSE	996	-0.883704003468192	13	148164	1298296	0.365165917639896	1	0	0.365165917639896	1	0	1150132	1	14	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	TIMM23	10	45972449	46003734	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	7	0	FALSE	CNLOH	PASS
659_bTo_pair	TIMM23B	10	49942033	49974850	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	1	0	FALSE	CNLOH	PASS
659_bTo_pair	TIMM29	19	10928733	10933535	FALSE	1141	-0.578703281933348	26	10514217	10929669	NA	2	NA	NA	2	NA	415452	NA	14	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TIMM44	19	7926718	7943920	FALSE	1132	-0.583194501817822	26	7916513	8843246	NA	2	NA	NA	2	NA	926733	NA	25	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TIMM50	19	39480412	39493785	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	12	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TIMM8A	23	101345659	101349196	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	3	0	TRUE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	TIMM8B	11	112084800	112086798	FALSE	724	-0.507750808576719	29	111913677	112086663	NA	2	NA	NA	2	NA	172986	NA	9	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TIMM9	14	58408494	58427614	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	TIMMDC1	3	119498532	119525090	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	7	0	FALSE	GAIN	PASS
659_bTo_pair	TIMP1	23	47582313	47586789	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	TIMP2	17	78852977	78925387	FALSE	1080	-0.537824093701074	27	76741010	78870935	1	2	1	1	2	1	2129925	1	20	13	1	TRUE	DIPLOID	PASS
659_bTo_pair	TIMP3	22	32801701	32863043	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	5	1	FALSE	CNLOH	PASS
659_bTo_pair	TIMP4	3	12153051	12159351	FALSE	199	-1.0441448018759	8	10200366	12187515	0.342391532111247	0	0	0.342391532111247	0	0	1987149	0	14	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TINAG	6	54307859	54390152	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	TINAGL1	1	31576485	31587686	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	TINCR	19	5558167	5578349	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	TINF2	14	24239643	24242674	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	TIPARP	3	156673235	156706770	FALSE	249	2.26921910475942	109	156555107	156706777	0.364342740527346	33	NA	0.364342740527346	33	NA	151670	NA	2	22	2	FALSE	AMP	PASS
659_bTo_pair	TIPIN	15	66336206	66386746	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	TIPRL	1	168178933	168202114	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	TIRAP	11	126283065	126298845	FALSE	732	-0.497254377564454	34	125672754	127000522	NA	2	NA	NA	2	NA	1327768	NA	19	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TJAP1	6	43477523	43506556	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	TJP1	15	29699367	29968865	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	44	1	FALSE	HETLOSS	PASS
659_bTo_pair	TJP2	9	69121264	69274615	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	28	0	FALSE	DIPLOID	PASS
659_bTo_pair	TJP3	19	3708109	3750813	FALSE	1122	-0.653400653967241	21	3157829	4037863	0.140309795179477	0	0	0.140309795179477	0	0	880034	0	27	25	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TK1	17	78174075	78187233	FALSE	1080	-0.537824093701074	27	76741010	78870935	1	2	1	1	2	1	2129925	1	20	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	TK2	16	66508003	66552544	FALSE	973	-0.642771892390385	26	64948130	66912568	NA	2	NA	NA	2	NA	1964438	NA	17	11	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TKFC	11	61333210	61353295	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	21	0	FALSE	GAIN	PASS
659_bTo_pair	TKT	3	53224707	53256052	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	TKTL1	23	154295671	154330350	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	13	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	TKTL2	4	163471093	163473746	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	TLCD1	17	28724348	28727935	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	TLCD2	17	1702790	1710438	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	TLDC1	16	84476421	84554033	FALSE	987	-0.578642888038652	23	81999201	85806436	0.186356639256811	1	0	0.186356639256811	1	0	3807235	1	31	8	3	FALSE	HETLOSS	PASS
659_bTo_pair	TLDC2	20	36876121	36894235	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	TLE1	9	81583683	81689305	FALSE	598	-0.546497547865564	29	78236395	83956411	NA	2	NA	NA	2	NA	5720016	NA	14	21	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TLE2	19	2997638	3047635	FALSE	1120	-0.63588318052236	23	2233887	3062886	0.186356639256811	1	0	0.186356639256811	1	0	828999	1	28	23	2	FALSE	HETLOSS	PASS
659_bTo_pair	TLE3	15	70047790	70098176	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	23	4	FALSE	HETLOSS	PASS
659_bTo_pair	TLE4	9	79571773	79726882	FALSE	598	-0.546497547865564	29	78236395	83956411	NA	2	NA	NA	2	NA	5720016	NA	14	25	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TLE6	19	2977446	2995184	FALSE	1120	-0.63588318052236	23	2233887	3062886	0.186356639256811	1	0	0.186356639256811	1	0	828999	1	28	16	1	FALSE	HETLOSS	PASS
659_bTo_pair	TLK1	2	170990823	171231314	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	22	1	FALSE	DIPLOID	PASS
659_bTo_pair	TLK2	17	62458658	62615481	FALSE	1064	-0.419094292936043	39	61867575	63873599	NA	2	NA	NA	2	NA	2006024	NA	24	22	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TLL1	4	165873258	166103895	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	23	2	FALSE	HETLOSS	PASS
659_bTo_pair	TLL2	10	96364606	96513918	FALSE	663	-0.556688707084635	24	94775074	96952170	0.359751661895656	2	0	0.359751661895656	2	0	2177096	2	21	21	0	FALSE	CNLOH	PASS
659_bTo_pair	TLN1	9	35696948	35732395	FALSE	591	0.73474920581053	74	35684233	36036976	0.364342740527346	9	NA	0.364342740527346	9	NA	352743	NA	17	57	2	FALSE	INDETERMINATE	PASS
659_bTo_pair	TLN2	15	62390526	62844631	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	58	2	FALSE	HETLOSS	PASS
659_bTo_pair	TLNRD1	15	81000944	81005788	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TLR1	4	38790677	38856817	FALSE	279	0.578727770796427	69	38659289	38828915	0.364342740527346	8	NA	0.364342740527346	8	NA	169626	NA	4	20	0	TRUE	INDETERMINATE	PASS
659_bTo_pair	TLR10	4	38772239	38782990	FALSE	279	0.578727770796427	69	38659289	38828915	0.364342740527346	8	NA	0.364342740527346	8	NA	169626	NA	4	10	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	TLR2	4	153684070	153705702	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	10	2	FALSE	HETLOSS	PASS
659_bTo_pair	TLR3	4	186069152	186088069	FALSE	305	-0.853036814117495	12	184629284	186555336	0.365165917639896	1	0	0.365165917639896	1	0	1926052	1	22	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	TLR4	9	117704175	117724730	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	TLR5	1	223109406	223143282	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	TLR6	4	38823715	38856817	FALSE	279	0.578727770796427	69	38659289	38828915	0.364342740527346	8	NA	0.364342740527346	8	NA	169626	NA	4	10	0	TRUE	INDETERMINATE	PASS
659_bTo_pair	TLR7	23	12867083	12890380	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	14	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	TLR8	23	12906620	12923169	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	14	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	TLR9	3	52221080	52226163	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	TLX1	10	101130505	101137789	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	5	0	FALSE	CNLOH	PASS
659_bTo_pair	TLX2	2	74513463	74517147	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TLX3	5	171309284	171312134	FALSE	357	1.53197307517613	91	171309384	171416856	0.364342740527346	18	NA	0.364342740527346	18	NA	107472	NA	2	5	0	FALSE	AMP	PASS
659_bTo_pair	TM2D1	1	61681046	61725423	FALSE	21	-0.414935064922519	39	59321678	64830856	NA	2	NA	NA	2	NA	5509178	NA	22	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TM2D2	8	38988808	38996824	FALSE	536	-0.812766686991614	14	38512585	41896345	0.365165917639896	1	0	0.365165917639896	1	0	3383760	1	19	5	2	FALSE	HETLOSS	PASS
659_bTo_pair	TM2D3	15	101621444	101652391	FALSE	933	-0.918772702357227	12	98968746	101922991	0.365165917639896	1	0	0.365165917639896	1	0	2954245	1	21	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	TM4SF1	3	149369022	149377865	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	5	0	FALSE	GAIN	PASS
659_bTo_pair	TM4SF18	3	149318498	149334414	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	5	0	FALSE	GAIN	PASS
659_bTo_pair	TM4SF19	3	196319342	196338503	FALSE	271	-0.194588974812627	47	196198492	198169864	0.365165917639896	3	1	0.365165917639896	3	1	1971372	2	29	5	0	FALSE	GAIN	PASS
659_bTo_pair	TM4SF19-TCTEX1D2	3	196316082	196338373	FALSE	271	-0.194588974812627	47	196198492	198169864	0.365165917639896	3	1	0.365165917639896	3	1	1971372	2	29	7	0	FALSE	GAIN	PASS
659_bTo_pair	TM4SF20	2	227362156	227381995	FALSE	186	-0.695736902539597	22	226867246	227993567	0.291335969972972	1	0	0.291335969972972	1	0	1126321	1	19	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	TM4SF4	3	149473974	149503281	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	5	1	FALSE	GAIN	PASS
659_bTo_pair	TM4SF5	17	4771884	4783213	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	TM6SF1	15	83107407	83144854	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	11	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TM6SF2	19	19264364	19273391	FALSE	1161	-0.292613860626304	46	19182590	19465611	0.298322295679939	3	NA	0.298322295679939	3	NA	283021	NA	10	11	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TM7SF2	11	65111845	65116384	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	10	0	FALSE	GAIN	PASS
659_bTo_pair	TM7SF3	12	26973195	27014434	FALSE	759	-0.427669886187443	30	25503824	31088026	1	2	1	1	2	1	5584202	1	28	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	TM9SF1	14	24189143	24195687	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	TM9SF2	13	99446311	99564006	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	17	0	FALSE	CNLOH	PASS
659_bTo_pair	TM9SF3	10	96518109	96587452	FALSE	663	-0.556688707084635	24	94775074	96952170	0.359751661895656	2	0	0.359751661895656	2	0	2177096	2	21	15	0	FALSE	CNLOH	PASS
659_bTo_pair	TM9SF4	20	32109506	32167258	FALSE	1201	-0.583226555890856	26	31757461	32331296	NA	2	NA	NA	2	NA	573835	NA	13	18	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMA16	4	163494442	163520539	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMA7	3	48440257	48444208	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMBIM1	2	218274192	218292586	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	12	4	FALSE	HETLOSS	PASS
659_bTo_pair	TMBIM4	12	66135846	66170072	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMBIM6	12	49707725	49764934	FALSE	770	-0.500134310902258	34	49065087	50081631	NA	2	NA	NA	2	NA	1016544	NA	25	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMC1	9	72521608	72838230	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	20	2	FALSE	DIPLOID	PASS
659_bTo_pair	TMC2	20	2536607	2641784	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	21	5	FALSE	HETLOSS	PASS
659_bTo_pair	TMC3	15	81331217	81374213	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	26	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TMC4	19	54160108	54173250	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMC5	16	19410496	19499113	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	25	1	FALSE	DIPLOID	PASS
659_bTo_pair	TMC6	17	78110458	78132407	FALSE	1080	-0.537824093701074	27	76741010	78870935	1	2	1	1	2	1	2129925	1	20	24	2	FALSE	DIPLOID	PASS
659_bTo_pair	TMC7	16	18983934	19063942	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMC8	17	78130770	78142968	FALSE	1080	-0.537824093701074	27	76741010	78870935	1	2	1	1	2	1	2129925	1	20	17	2	FALSE	DIPLOID	PASS
659_bTo_pair	TMCC1	3	129647792	129893606	FALSE	240	-0.311262736248051	40	128620554	130098189	0.308149309490068	3	1	0.308149309490068	3	1	1477635	2	22	15	0	FALSE	GAIN	PASS
659_bTo_pair	TMCC2	1	205228176	205285632	FALSE	66	-0.597189828646048	26	204618263	205619845	NA	2	NA	NA	2	NA	1001582	NA	13	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMCC3	12	94567124	94650562	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMCO1	1	165724293	165827755	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMCO2	1	40245947	40251691	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMCO3	13	113490995	113554590	FALSE	846	-0.38711803760524	39	113325636	114000814	NA	2	NA	NA	2	NA	675178	NA	11	14	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMCO4	1	19682213	19799945	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	TMCO5A	15	37921939	37967724	FALSE	890	-0.864832779596883	13	34359248	37966686	0.365165917639896	1	0	0.365165917639896	1	0	3607438	1	12	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMCO6	5	140639427	140645408	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	12	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TMED1	19	10832438	10836318	FALSE	1141	-0.578703281933348	26	10514217	10929669	NA	2	NA	NA	2	NA	415452	NA	14	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMED10	14	75131470	75176631	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMED2	12	123584531	123598577	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMED3	15	79311062	79427432	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMED4	7	44577894	44582287	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	5	1	FALSE	GAIN	PASS
659_bTo_pair	TMED5	1	93149742	93180728	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	5	2	FALSE	DIPLOID	PASS
659_bTo_pair	TMED6	16	69343248	69351809	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMED7	5	115613508	115632992	FALSE	331	-0.706980197323045	20	112861366	122075379	0.365165917639896	1	0	0.365165917639896	1	0	9214013	1	31	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMED7-TICAM2	5	115578642	115626161	FALSE	331	-0.706980197323045	20	112861366	122075379	0.365165917639896	1	0	0.365165917639896	1	0	9214013	1	31	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMED8	14	77335021	77377109	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	TMED9	5	177592158	177596124	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEFF1	9	100473113	100577636	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEFF2	2	191949043	192195709	FALSE	161	-0.46057869782823	30	190057617	197310624	1	2	1	1	2	1	7253007	1	23	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM100	17	55719627	55732121	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMEM101	17	44011188	44023946	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMEM102	17	7435443	7437679	FALSE	1000	-0.750226164220686	19	7324407	7655594	0.365165917639896	1	0	0.365165917639896	1	0	331187	1	31	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM104	17	74776483	74839779	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM105	17	81311270	81330674	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM106A	17	43211835	43220041	FALSE	1042	-0.917571943211592	13	43146172	43526465	0.365165917639896	1	0	0.365165917639896	1	0	380293	1	6	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM106B	7	12211241	12243367	FALSE	456	-0.240618790532325	45	6028682	12688782	0.279823559258657	3	0	0.279823559258657	3	0	6660100	3	32	7	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	TMEM106C	12	47963569	47968878	FALSE	766	-0.557616146966431	26	45922034	47968195	NA	2	NA	NA	2	NA	2046161	NA	13	8	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMEM107	17	8173237	8176399	FALSE	1004	-0.905703364358502	13	8096639	8190110	0.365165917639896	1	0	0.365165917639896	1	0	93471	1	7	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM108	3	133038391	133397792	FALSE	242	-0.32037413513609	40	130560427	134790274	0.308149309490068	3	1	0.308149309490068	3	1	4229847	2	29	9	2	FALSE	GAIN	PASS
659_bTo_pair	TMEM109	11	60913874	60923443	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	5	0	FALSE	GAIN	PASS
659_bTo_pair	TMEM11	17	21197280	21214624	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	4	0	TRUE	CNLOH	PASS
659_bTo_pair	TMEM110-MUSTN1	3	52833121	52897562	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM114	16	8537605	8590193	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM115	3	50354749	50359610	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM116	12	111931282	112013185	FALSE	802	-0.463173510714366	34	111455064	112408626	NA	2	NA	NA	2	NA	953562	NA	12	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMEM117	12	43835967	44389762	FALSE	764	-0.478463991093384	34	40959192	45805435	NA	2	NA	NA	2	NA	4846243	NA	16	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMEM119	12	108589846	108598320	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM120A	7	75986837	75994659	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM120B	12	121712752	121783001	FALSE	812	-0.468438273619664	34	121006302	121793667	NA	2	NA	NA	2	NA	787365	NA	12	15	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMEM121	14	105526603	105530202	FALSE	885	-0.488568816150345	30	104868462	105529782	1	2	1	1	2	1	661320	1	18	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM121B	22	17116299	17121367	FALSE	1240	-0.594689860601271	26	15528179	18606839	NA	2	NA	NA	2	NA	3078660	NA	21	7	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMEM123	11	102396332	102470384	FALSE	721	-0.562522810116468	23	102362892	108222481	0.186356639256811	1	0	0.186356639256811	1	0	5859589	1	35	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM125	1	43269994	43274002	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM126A	11	85647967	85656547	FALSE	712	-0.188800010767045	48	77590086	86068715	0.365165917639896	3	NA	0.365165917639896	3	NA	8478629	NA	30	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TMEM126B	11	85628573	85636539	FALSE	712	-0.188800010767045	48	77590086	86068715	0.365165917639896	3	NA	0.365165917639896	3	NA	8478629	NA	30	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TMEM127	2	96248516	96265994	TRUE	127	2.33118807409228	110	96248652	96266360	0.364342740527346	34	NA	0.364342740527346	34	NA	17708	NA	2	24	1	FALSE	AMP	PASS
659_bTo_pair	TMEM128	4	4235542	4248212	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	5	1	FALSE	GAIN	PASS
659_bTo_pair	TMEM129	4	1715952	1721358	FALSE	272	-0.300029378244858	40	85877	1745020	0.308149309490068	3	1	0.308149309490068	3	1	1659143	2	29	6	1	FALSE	GAIN	PASS
659_bTo_pair	TMEM130	7	98846488	98870771	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM131	2	97756333	97995891	FALSE	130	-0.589699300815548	26	97757310	98396089	NA	2	NA	NA	2	NA	638779	NA	3	44	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMEM131L	4	153466346	153636711	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	38	5	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM132A	11	60924463	60937159	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	20	4	FALSE	GAIN	PASS
659_bTo_pair	TMEM132B	12	125186836	125662377	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	17	1	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM132C	12	128267403	128707915	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM132D	12	129071725	129903666	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	18	2	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM132E	17	34579487	34639318	FALSE	1022	-0.670211431189836	22	32030679	35026358	0.291335969972972	1	0	0.291335969972972	1	0	2995679	1	23	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM134	11	67461710	67469272	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	7	0	FALSE	GAIN	PASS
659_bTo_pair	TMEM135	11	87037844	87323758	FALSE	714	-0.230278951577934	46	86306357	90211282	0.298322295679939	3	NA	0.298322295679939	3	NA	3904925	NA	21	15	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	TMEM136	11	120325129	120333682	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM138	11	61362001	61369509	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	4	0	FALSE	GAIN	PASS
659_bTo_pair	TMEM139	7	143279957	143288048	FALSE	503	-0.495530614890199	34	143026241	143572680	NA	2	NA	NA	2	NA	546439	NA	15	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMEM140	7	135148072	135166215	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM141	9	136791355	136793257	FALSE	631	-1.04738377038343	8	136673897	136866235	0.342391532111247	0	0	0.342391532111247	0	0	192338	0	15	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TMEM143	19	48332356	48364237	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM144	4	158201604	158255411	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM145	19	42313325	42325062	FALSE	1179	-0.582084941516902	26	42297317	43535595	NA	2	NA	NA	2	NA	1238278	NA	25	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMEM147	19	35545595	35547526	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM14A	6	52671109	52686588	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM14B	6	10747759	10852753	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM14C	6	10722915	10731129	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM150A	2	85598548	85603196	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM150B	19	55312801	55334048	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	7	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TMEM150C	4	82483170	82562357	FALSE	289	-0.397475195823872	39	80335777	83458331	NA	2	NA	NA	2	NA	3122554	NA	19	7	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMEM151A	11	66291870	66296664	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	7	0	FALSE	GAIN	PASS
659_bTo_pair	TMEM151B	6	44270466	44307506	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	34	3	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM154	4	152618632	152680165	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM155	4	121758930	121765427	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM156	4	38966744	39032922	FALSE	280	-0.191477557443324	47	38829296	41740154	0.365165917639896	3	1	0.365165917639896	3	1	2910858	2	22	8	1	FALSE	GAIN	PASS
659_bTo_pair	TMEM158	3	45224466	45226278	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM159	16	21158377	21180616	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM160	19	47045907	47048630	FALSE	1187	-0.64296711085636	26	47021158	48297657	NA	2	NA	NA	2	NA	1276499	NA	31	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMEM161A	19	19119169	19138513	FALSE	1159	-0.165917001507678	49	18177228	19138502	0.365165917639896	3	1	0.365165917639896	3	1	961274	2	36	13	1	FALSE	GAIN	PASS
659_bTo_pair	TMEM161B	5	88189633	88269476	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM163	2	134455759	134719000	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM164	23	110002631	110182734	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	7	0	FALSE	AMP (many states)	PASS
659_bTo_pair	TMEM165	4	55395957	55453397	FALSE	285	-0.676685623676823	22	55346376	64409389	0.291335969972972	1	0	0.291335969972972	1	0	9063013	1	23	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM167A	5	83052846	83077863	FALSE	327	-0.729214269739125	19	80961009	86619409	0.365165917639896	1	0	0.365165917639896	1	0	5658400	1	14	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM167B	1	109089803	109096934	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM168	7	112762382	112790592	FALSE	488	-0.464127371400283	34	107070260	116559206	NA	2	NA	NA	2	NA	9488946	NA	33	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMEM169	2	216081866	216102783	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM17	2	62500221	62511894	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM170A	16	75443054	75465497	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM170B	6	11538278	11583524	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM171	5	73120292	73131817	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM173	5	139475534	139482935	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	7	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TMEM174	5	73173195	73175143	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM175	4	932387	958656	FALSE	272	-0.300029378244858	40	85877	1745020	0.308149309490068	3	1	0.308149309490068	3	1	1659143	2	29	13	0	FALSE	GAIN	PASS
659_bTo_pair	TMEM176A	7	150800403	150805120	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	7	2	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM176B	7	150791285	150801360	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	6	3	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM177	2	119679167	119686507	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM178A	2	39664982	39717963	FALSE	104	-0.491151156674762	34	39178660	42057603	NA	2	NA	NA	2	NA	2878943	NA	7	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMEM178B	7	141074232	141480380	FALSE	500	-0.745042700177313	19	140929950	142218464	0.365165917639896	1	0	0.365165917639896	1	0	1288514	1	15	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM179	14	104474678	104605647	FALSE	883	-0.69016701050987	21	103712930	104759455	0.140309795179477	0	0	0.140309795179477	0	0	1046525	0	14	11	5	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TMEM179B	11	62787415	62790405	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TMEM18	2	667335	677439	FALSE	89	-0.524158836377085	27	41620	3847167	1	2	1	1	2	1	3805547	1	18	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM181	6	158536436	158635428	FALSE	442	-0.485239870020868	34	157293045	158767513	NA	2	NA	NA	2	NA	1474468	NA	11	18	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMEM182	2	102736905	103019900	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM183A	1	203007386	203024848	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM184A	7	1542235	1560821	FALSE	450	-0.329551508654045	40	193185	2379492	0.308149309490068	3	1	0.308149309490068	3	1	2186307	2	26	10	1	FALSE	GAIN	PASS
659_bTo_pair	TMEM184B	22	38219291	38273034	FALSE	1265	-0.53141020507802	29	38041114	39152464	NA	2	NA	NA	2	NA	1111350	NA	31	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMEM184C	4	147617383	147672044	FALSE	300	-0.423460920061428	34	143186078	151174790	NA	2	NA	NA	2	NA	7988712	NA	32	22	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMEM185A	23	149596556	149631912	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	6	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	TMEM185B	2	120221278	120223408	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM186	16	8780384	8797648	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM187	23	153972327	153983195	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	4	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	TMEM189	20	50118254	50153734	FALSE	1216	-0.465272765977354	30	47658376	50278257	1	2	1	1	2	1	2619881	1	18	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM189-UBE2V1	20	50081124	50153637	FALSE	1216	-0.465272765977354	30	47658376	50278257	1	2	1	1	2	1	2619881	1	18	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM19	12	71686087	71705046	FALSE	792	-0.349776929755415	43	71610399	76348235	0.192136715055622	3	NA	0.192136715055622	3	NA	4737836	NA	18	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TMEM190	19	55376836	55378244	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TMEM191B	22	18527802	18530573	FALSE	1240	-0.594689860601271	26	15528179	18606839	NA	2	NA	NA	2	NA	3078660	NA	21	8	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMEM191C	22	21466423	21471269	FALSE	1246	-0.481954888210425	34	21001894	21693896	NA	2	NA	NA	2	NA	692002	NA	14	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMEM192	4	165070608	165208549	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM196	7	19719310	19773598	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	5	1	FALSE	GAIN	PASS
659_bTo_pair	TMEM198	2	219543663	219550595	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM199	17	28357581	28363683	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM200A	6	130365734	130443063	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	7	2	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM200B	1	29119428	29123935	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM200C	18	5882072	5895955	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	8	0	FALSE	GAIN	PASS
659_bTo_pair	TMEM201	1	9588922	9614873	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM202	15	72398273	72408029	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM203	9	137204082	137205638	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM204	16	1528688	1555580	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	5	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TMEM205	19	11342776	11346518	FALSE	1143	-0.599591757528625	23	11089545	11375998	0.186356639256811	1	0	0.186356639256811	1	0	286453	1	11	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM206	1	212363931	212414901	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM207	3	190428655	190449876	FALSE	269	-0.263219948753545	44	189957970	195888442	0.345317016959666	3	1	0.345317016959666	3	1	5930472	2	31	5	0	FALSE	GAIN	PASS
659_bTo_pair	TMEM208	16	67227103	67229278	FALSE	976	-0.467350965811123	34	67110264	67538977	NA	2	NA	NA	2	NA	428713	NA	24	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMEM209	7	130164715	130207770	FALSE	494	-0.536776174448359	29	129225418	130685270	NA	2	NA	NA	2	NA	1459852	NA	17	15	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMEM210	9	137170858	137172409	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM211	22	24934954	24946695	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	3	0	FALSE	CNLOH	PASS
659_bTo_pair	TMEM212	3	171843349	171938715	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	5	0	FALSE	GAIN	PASS
659_bTo_pair	TMEM213	7	138797952	138838101	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM214	2	27032910	27041695	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	17	1	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM215	9	32783499	32787399	FALSE	586	1.40811151760028	88	32630356	32784840	0.364342740527346	16	NA	0.364342740527346	16	NA	154484	NA	2	4	1	TRUE	AMP	PASS
659_bTo_pair	TMEM216	11	61391687	61398863	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	5	0	FALSE	GAIN	PASS
659_bTo_pair	TMEM217	6	37212180	37258155	FALSE	397	-0.509151429367598	27	37213022	41687167	1	2	1	1	2	1	4474145	1	33	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM218	11	125096545	125111763	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM219	16	29940885	29973052	FALSE	965	-0.735005669796309	19	28989573	29982749	0.365165917639896	1	0	0.365165917639896	1	0	993176	1	25	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM220	17	10699015	10730316	FALSE	1006	-0.894220729735546	12	8370429	10825247	0.365165917639896	1	0	0.365165917639896	1	0	2454818	1	31	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM221	19	17435509	17448567	FALSE	1155	-0.249305971018279	46	17273895	17821522	0.298322295679939	3	NA	0.298322295679939	3	NA	547627	NA	25	5	3	FALSE	GAIN (many states)	PASS
659_bTo_pair	TMEM222	1	27322145	27336400	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM223	11	62771629	62792021	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	20	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TMEM225	11	123882926	123885642	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM225B	7	99598066	99610813	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM229A	7	124030916	124033023	FALSE	490	-0.576498321273708	26	116888215	124790543	NA	2	NA	NA	2	NA	7902328	NA	33	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMEM229B	14	67447084	67533739	FALSE	862	-0.496151350288089	31	65561584	67816009	1	2	1	1	2	1	2254425	1	17	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM230	20	5068232	5113103	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM231	16	75536744	75556286	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	7	2	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM232	5	110289233	110738956	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	16	1	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM233	12	119593459	119643066	FALSE	808	-0.531025796359709	27	115966146	120090026	1	2	1	1	2	1	4123880	1	23	3	2	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM234	1	32214472	32222359	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM235	17	78231310	78240987	FALSE	1080	-0.537824093701074	27	76741010	78870935	1	2	1	1	2	1	2129925	1	20	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM236	10	17752252	17800868	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	3	1	FALSE	CNLOH	PASS
659_bTo_pair	TMEM237	2	201620184	201643570	FALSE	166	-0.425780118113581	30	201288659	203854096	1	2	1	1	2	1	2565437	1	22	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM238	19	55379245	55384598	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	2	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TMEM239	20	2816302	2820284	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM240	1	1535174	1540453	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM241	18	23197144	23437961	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	23	2	FALSE	GAIN	PASS
659_bTo_pair	TMEM242	6	157289386	157323601	FALSE	442	-0.485239870020868	34	157293045	158767513	NA	2	NA	NA	2	NA	1474468	NA	11	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMEM243	7	87196160	87220587	FALSE	477	-0.558719554035895	26	86880427	87472624	NA	2	NA	NA	2	NA	592197	NA	5	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMEM244	6	129831244	129861547	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	5	3	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM245	9	109015152	109119945	FALSE	613	-0.484018775274725	34	108869192	109119647	NA	2	NA	NA	2	NA	250455	NA	4	21	5	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMEM246	9	101473171	101533537	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM247	2	46479565	46484425	FALSE	108	-0.751130758275331	19	46479657	47176488	0.365165917639896	1	0	0.365165917639896	1	0	696831	1	11	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM248	7	66921225	66958551	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM249	8	144352219	144354914	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM25	11	118531041	118547280	FALSE	728	-0.487905654975058	30	118527582	119195409	1	2	1	1	2	1	667827	1	26	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM250	9	136114581	136118863	FALSE	629	-0.955558414525678	9	134750808	136485014	0.291955377254426	0	0	0.291955377254426	0	0	1734206	0	30	2	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TMEM251	14	93184951	93187089	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM252	9	68536580	68540867	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM253	14	21098937	21103724	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM254	10	80078646	80092557	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	9	0	FALSE	CNLOH	PASS
659_bTo_pair	TMEM255A	23	120258650	120311556	FALSE	1328	0.070674287613007	59	119603543	121049335	0.308533751035793	5	NA	0.308533751035793	5	NA	1445792	NA	34	10	0	FALSE	AMP (many states)	PASS
659_bTo_pair	TMEM255B	13	113759240	113816995	FALSE	846	-0.38711803760524	39	113325636	114000814	NA	2	NA	NA	2	NA	675178	NA	11	11	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMEM256	17	7402975	7404137	FALSE	1000	-0.750226164220686	19	7324407	7655594	0.365165917639896	1	0	0.365165917639896	1	0	331187	1	31	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM256-PLSCR3	17	7389734	7404097	FALSE	1000	-0.750226164220686	19	7324407	7655594	0.365165917639896	1	0	0.365165917639896	1	0	331187	1	31	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM258	11	61768501	61792802	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	30	0	FALSE	GAIN	PASS
659_bTo_pair	TMEM259	19	1009648	1021179	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	14	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TMEM26	10	61406643	61453450	FALSE	644	-0.637578894715957	26	60871631	61765979	NA	2	NA	NA	2	NA	894348	NA	3	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMEM260	14	56488354	56650606	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	17	5	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM262	11	65084979	65089375	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	10	0	FALSE	GAIN	PASS
659_bTo_pair	TMEM263	12	106955719	106978778	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM265	16	30740381	30744281	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM266	15	76059837	76229121	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	14	2	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM267	5	43444252	43483893	FALSE	316	-0.143574193475256	49	39021030	43704252	0.365165917639896	3	1	0.365165917639896	3	1	4683222	2	28	4	0	FALSE	GAIN	PASS
659_bTo_pair	TMEM268	9	114611206	114646422	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM269	1	42785007	42816619	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM270	7	73861159	73865893	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM272	13	51813347	51845175	FALSE	836	-0.444239733377228	32	50956423	72747004	0.365165917639896	2	0	0.365165917639896	2	0	21790581	2	40	5	0	FALSE	CNLOH	PASS
659_bTo_pair	TMEM273	10	49154725	49188585	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	8	0	FALSE	CNLOH	PASS
659_bTo_pair	TMEM30A	6	75252924	75284968	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM30B	14	61277370	61281840	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM31	23	103710909	103714028	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	3	0	FALSE	AMP (many states)	PASS
659_bTo_pair	TMEM33	4	41935120	41960572	FALSE	282	-0.204234033978701	47	41752697	49032685	0.365165917639896	3	1	0.365165917639896	3	1	7279988	2	31	7	0	FALSE	GAIN	PASS
659_bTo_pair	TMEM35A	23	101078720	101096364	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	3	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	TMEM35B	1	34981535	34985353	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM37	2	119429901	119438520	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM38A	19	16661127	16690029	FALSE	1154	-0.533888138892061	27	16361883	17271664	1	2	1	1	2	1	909781	1	23	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM38B	9	105694544	105776612	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM39A	3	119429500	119468830	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	9	0	FALSE	GAIN	PASS
659_bTo_pair	TMEM39B	1	32072031	32102866	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM40	3	12733525	12769457	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM41A	3	185476496	185499057	FALSE	260	1.51389216559589	90	185282976	185489114	0.364342740527346	18	NA	0.364342740527346	18	NA	206138	NA	2	33	4	TRUE	AMP	PASS
659_bTo_pair	TMEM41B	11	9280654	9314780	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM42	3	44861869	44865670	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM43	3	14124940	14143679	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	12	2	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM44	3	194587673	194633689	FALSE	269	-0.263219948753545	44	189957970	195888442	0.345317016959666	3	1	0.345317016959666	3	1	5930472	2	31	12	4	FALSE	GAIN	PASS
659_bTo_pair	TMEM45A	3	100492619	100577444	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	6	0	FALSE	GAIN	PASS
659_bTo_pair	TMEM45B	11	129815819	129860003	FALSE	734	-0.516486951202814	27	128842412	134387591	1	2	1	1	2	1	5545179	1	27	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM47	23	34627064	34657288	FALSE	1283	0.969154799392592	78	34129927	35802579	0.364342740527346	11	NA	0.364342740527346	11	NA	1672652	NA	4	4	1	FALSE	AMP	PASS
659_bTo_pair	TMEM50A	1	25337917	25362361	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM50B	21	33432485	33480011	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM51	1	15152532	15220480	FALSE	6	-0.41295085321191	39	13779356	15847467	NA	2	NA	NA	2	NA	2068111	NA	18	8	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMEM52	1	1917590	1919273	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM52B	12	10170542	10191801	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM53	1	44635238	44674555	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM54	1	32894594	32901438	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM56	1	95117338	95197607	FALSE	31	-0.34979279123772	43	94820443	100270584	0.192136715055622	3	NA	0.192136715055622	3	NA	5450141	NA	22	7	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	TMEM56-RWDD3	1	95117923	95247225	FALSE	31	-0.34979279123772	43	94820443	100270584	0.192136715055622	3	NA	0.192136715055622	3	NA	5450141	NA	22	15	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	TMEM59	1	54026681	54053504	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM59L	19	18607430	18621039	FALSE	1159	-0.165917001507678	49	18177228	19138502	0.365165917639896	3	1	0.365165917639896	3	1	961274	2	36	8	1	FALSE	GAIN	PASS
659_bTo_pair	TMEM60	7	77793728	77798580	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM61	1	54980792	54992293	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM62	15	43123279	43185146	FALSE	900	-0.777056562410308	17	42718512	43401817	0.365165917639896	1	0	0.365165917639896	1	0	683305	1	13	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM63A	1	225845536	225882369	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	22	4	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM63B	6	44126914	44155519	FALSE	403	-0.460377194073257	34	44113878	44253574	NA	2	NA	NA	2	NA	139696	NA	6	23	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMEM63C	14	77116568	77259495	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	27	1	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM64	8	90621995	90791632	FALSE	557	-0.436164323203642	34	90006291	91395139	NA	2	NA	NA	2	NA	1388848	NA	9	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMEM65	8	124306189	124372692	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	8	0	FALSE	GAIN	PASS
659_bTo_pair	TMEM67	8	93754844	93819234	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	28	2	FALSE	GAIN	PASS
659_bTo_pair	TMEM68	8	55696424	55773407	FALSE	545	0.0328509510438924	56	54463210	55824671	0.365165917639896	4	NA	0.365165917639896	4	NA	1361461	NA	4	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TMEM69	1	45687214	45694443	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM70	8	73972437	73982783	FALSE	554	2.41360149859874	112	73945532	73976259	0.364342740527346	37	NA	0.364342740527346	37	NA	30727	NA	2	6	1	TRUE	AMP	PASS
659_bTo_pair	TMEM71	8	132685007	132760712	FALSE	565	-0.282741903777565	44	129748604	134610527	0.345317016959666	3	1	0.345317016959666	3	1	4861923	2	18	11	2	FALSE	GAIN	PASS
659_bTo_pair	TMEM72	10	44911200	44937002	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	6	0	FALSE	CNLOH	PASS
659_bTo_pair	TMEM74	8	108606850	108787615	FALSE	561	-0.210477706860293	47	102652438	116770243	0.365165917639896	3	1	0.365165917639896	3	1	14117805	2	32	4	0	FALSE	GAIN	PASS
659_bTo_pair	TMEM74B	20	1180561	1185415	FALSE	1195	-0.60512265366003	23	87765	1537211	0.186356639256811	1	0	0.186356639256811	1	0	1449446	1	33	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM79	1	156282935	156293185	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM80	11	695428	705028	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	7	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TMEM81	1	205083129	205084460	FALSE	66	-0.597189828646048	26	204618263	205619845	NA	2	NA	NA	2	NA	1001582	NA	13	3	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMEM82	1	15742422	15747982	FALSE	6	-0.41295085321191	39	13779356	15847467	NA	2	NA	NA	2	NA	2068111	NA	18	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMEM86A	11	18693122	18704785	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM86B	19	55226639	55229264	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TMEM87A	15	42210452	42273663	FALSE	898	-0.892191685906218	12	42081573	42681446	0.365165917639896	1	0	0.365165917639896	1	0	599873	1	13	21	1	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM87B	2	112055223	112119318	FALSE	137	1.26309160945389	86	111898780	112055585	0.364342740527346	15	NA	0.364342740527346	15	NA	156805	NA	2	20	0	TRUE	AMP	PASS
659_bTo_pair	TMEM88	17	7855065	7856099	FALSE	1002	-0.806633716627379	14	7689340	8047671	0.365165917639896	1	0	0.365165917639896	1	0	358331	1	15	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM88B	1	1426128	1427787	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	3	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TMEM89	3	48620759	48621855	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM8A	16	370773	387113	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	16	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TMEM8B	9	35814451	35865518	FALSE	591	0.73474920581053	74	35684233	36036976	0.364342740527346	9	NA	0.364342740527346	9	NA	352743	NA	17	20	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	TMEM9	1	201134772	201171574	FALSE	60	-0.443336911293225	30	196228264	201209660	1	2	1	1	2	1	4981396	1	29	5	2	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM91	19	41350911	41384083	FALSE	1176	1.53003969549462	91	41330787	41353939	0.364342740527346	18	NA	0.364342740527346	18	NA	23152	NA	3	15	0	TRUE	AMP	PASS
659_bTo_pair	TMEM92	17	50271406	50281485	FALSE	1053	-0.561829441831031	26	49646906	50626743	NA	2	NA	NA	2	NA	979837	NA	25	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMEM94	17	75441159	75500090	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	33	2	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM95	17	7355123	7357219	FALSE	1000	-0.750226164220686	19	7324407	7655594	0.365165917639896	1	0	0.365165917639896	1	0	331187	1	31	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM97	17	28319095	28328685	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMEM98	17	32927910	32945106	FALSE	1022	-0.670211431189836	22	32030679	35026358	0.291335969972972	1	0	0.291335969972972	1	0	2995679	1	23	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM99	17	40819106	40836274	FALSE	1034	-0.883800586203816	13	40656673	40979037	0.365165917639896	1	0	0.365165917639896	1	0	322364	1	14	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMEM9B	11	8947294	8965011	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	TMF1	3	69019827	69052339	FALSE	228	-0.860828429618822	13	64010871	69385924	0.365165917639896	1	0	0.365165917639896	1	0	5375053	1	16	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMIE	3	46694528	46710886	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	TMIGD1	17	30316333	30334059	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMIGD2	19	4292232	4302431	FALSE	1124	-0.62008955817668	23	4168484	5151543	0.186356639256811	1	0	0.186356639256811	1	0	983059	1	28	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMIGD3	1	111483348	111563962	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	12	3	FALSE	HETLOSS	PASS
659_bTo_pair	TMLHE	23	155490115	155669944	FALSE	1341	-0.0231097163941018	55	154552015	155545250	0.328696605851359	4	NA	0.328696605851359	4	NA	993235	NA	23	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TMOD1	9	97501180	97601748	FALSE	608	-0.541405085979946	27	95522076	99069752	1	2	1	1	2	1	3547676	1	31	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMOD2	15	51751561	51816368	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMOD3	15	51829628	51947295	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMOD4	1	151169986	151176284	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMPO	12	98515512	98550379	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMPPE	3	33090421	33096801	FALSE	209	-0.637968449787088	26	31990360	37328493	NA	2	NA	NA	2	NA	5338133	NA	26	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMPRSS11A	4	67909385	67964140	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMPRSS11B	4	68226653	68245720	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMPRSS11D	4	67820876	67884032	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMPRSS11E	4	68447449	68497604	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	TMPRSS11F	4	68053198	68129880	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	TMPRSS12	12	50842920	50887884	FALSE	772	-0.61197679162419	26	50109466	51920864	NA	2	NA	NA	2	NA	1811398	NA	27	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMPRSS13	11	117900643	117929459	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	16	2	FALSE	HETLOSS	PASS
659_bTo_pair	TMPRSS15	21	18269116	18485879	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	25	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMPRSS2	21	41464551	41531116	FALSE	1231	1.72639855214173	97	41458607	41498155	0.364342740527346	21	NA	0.364342740527346	21	NA	39548	NA	3	123	13	TRUE	AMP	PASS
659_bTo_pair	TMPRSS3	21	42371837	42396846	FALSE	1234	-0.544212636077936	27	41740855	44141314	1	2	1	1	2	1	2400459	1	31	13	3	FALSE	DIPLOID	PASS
659_bTo_pair	TMPRSS4	11	118077012	118121890	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	16	1	FALSE	HETLOSS	PASS
659_bTo_pair	TMPRSS5	11	113687546	113706373	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMPRSS6	22	37065436	37109713	FALSE	1263	-0.528184158498335	29	36991204	37967644	NA	2	NA	NA	2	NA	976440	NA	31	22	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMPRSS7	3	112034843	112081269	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	17	0	FALSE	GAIN	PASS
659_bTo_pair	TMPRSS9	19	2360238	2426239	FALSE	1120	-0.63588318052236	23	2233887	3062886	0.186356639256811	1	0	0.186356639256811	1	0	828999	1	28	23	8	FALSE	HETLOSS	PASS
659_bTo_pair	TMSB10	2	84905625	84906675	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	TMSB15A	23	102513676	102516784	FALSE	1321	0.439394403838451	66	101391440	103377786	0.364342740527346	7	NA	0.364342740527346	7	NA	1986346	NA	34	2	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	TMSB15B	23	103918896	104076212	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	7	2	FALSE	AMP (many states)	PASS
659_bTo_pair	TMSB4X	23	12975108	12977227	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	2	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	TMTC1	12	29500840	29784759	FALSE	759	-0.427669886187443	30	25503824	31088026	1	2	1	1	2	1	5584202	1	28	20	1	FALSE	DIPLOID	PASS
659_bTo_pair	TMTC2	12	82686880	83134870	FALSE	793	-0.510041181295141	29	76355979	85286979	NA	2	NA	NA	2	NA	8931000	NA	22	18	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMTC3	12	88142296	88199887	FALSE	794	-0.258431968401282	46	85301316	91178343	0.298322295679939	3	NA	0.298322295679939	3	NA	5877027	NA	19	17	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TMTC4	13	100603927	100675093	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	20	3	FALSE	CNLOH	PASS
659_bTo_pair	TMUB1	7	151081080	151083546	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	TMUB2	17	44186970	44191731	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TMX1	14	51240162	51257546	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	TMX2	11	57712600	57740973	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	9	0	FALSE	GAIN	PASS
659_bTo_pair	TMX2-CTNND1	11	57712605	57791586	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	22	1	FALSE	GAIN	PASS
659_bTo_pair	TMX3	18	68673688	68715298	FALSE	1111	-0.872352968035647	12	63331800	74584528	0.365165917639896	1	0	0.365165917639896	1	0	11252728	1	31	16	1	FALSE	HETLOSS	PASS
659_bTo_pair	TMX4	20	7977348	8019829	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	TNC	9	115019578	115118257	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	43	1	FALSE	DIPLOID	PASS
659_bTo_pair	TNF	6	31575567	31578336	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	TNFAIP1	17	28335602	28347009	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	TNFAIP2	14	103123442	103137439	FALSE	880	-0.612786833130899	26	102922742	103500099	NA	2	NA	NA	2	NA	577357	NA	7	14	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TNFAIP3	6	137867188	137883312	TRUE	428	1.44085434531653	88	137194850	137884668	0.364342740527346	17	NA	0.364342740527346	17	NA	689818	NA	3	26	1	FALSE	AMP	PASS
659_bTo_pair	TNFAIP6	2	151357592	151380048	FALSE	149	-0.454179855872301	30	147845197	157628657	1	2	1	1	2	1	9783460	1	30	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	TNFAIP8	5	119268692	119399688	FALSE	331	-0.706980197323045	20	112861366	122075379	0.365165917639896	1	0	0.365165917639896	1	0	9214013	1	31	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	TNFAIP8L1	19	4639518	4655568	FALSE	1124	-0.62008955817668	23	4168484	5151543	0.186356639256811	1	0	0.186356639256811	1	0	983059	1	28	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	TNFAIP8L2	1	151156629	151159749	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	TNFAIP8L3	15	51056598	51105276	FALSE	906	-0.753975485974629	19	49508303	51105073	0.365165917639896	1	0	0.365165917639896	1	0	1596770	1	12	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	TNFRSF10A	8	23190452	23225126	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	TNFRSF10B	8	23020133	23069179	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	11	2	FALSE	HETLOSS	PASS
659_bTo_pair	TNFRSF10C	8	23102590	23117437	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	TNFRSF10D	8	23135588	23164030	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	TNFRSF11A	18	62325287	62391292	FALSE	1109	-0.86662286323735	13	60372339	62975524	0.365165917639896	1	0	0.365165917639896	1	0	2603185	1	8	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	TNFRSF11B	8	118923557	118952200	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	7	1	FALSE	GAIN	PASS
659_bTo_pair	TNFRSF12A	16	3018445	3022383	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	TNFRSF13B	17	16929816	16972118	FALSE	1012	-0.646922995033775	26	16234077	17184849	NA	2	NA	NA	2	NA	950772	NA	11	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TNFRSF13C	22	41922023	41926818	FALSE	1269	-0.443951758803067	34	41205309	42514754	NA	2	NA	NA	2	NA	1309445	NA	31	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TNFRSF14	1	2555639	2565382	TRUE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	TNFRSF17	16	11965107	11968068	FALSE	955	2.15547688387265	107	11965379	11968053	0.364342740527346	30	NA	0.364342740527346	30	NA	2674	NA	2	6	2	FALSE	AMP	PASS
659_bTo_pair	TNFRSF18	1	1203508	1206691	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	6	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TNFRSF19	13	23570370	23676104	FALSE	824	-0.820211361281197	14	23365275	27988570	0.365165917639896	1	0	0.365165917639896	1	0	4623295	1	32	10	2	FALSE	HETLOSS	PASS
659_bTo_pair	TNFRSF1A	12	6328757	6342114	FALSE	741	-0.251609480735115	44	4489790	6567957	0.345317016959666	3	1	0.345317016959666	3	1	2078167	2	28	11	0	FALSE	GAIN	PASS
659_bTo_pair	TNFRSF1B	1	12167003	12209228	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	TNFRSF21	6	47231532	47309905	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	TNFRSF25	1	6460786	6466195	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	TNFRSF4	1	1211326	1214138	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	7	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TNFRSF6B	20	63696651	63698684	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	6	2	TRUE	DIPLOID	PASS
659_bTo_pair	TNFRSF8	1	12063377	12144207	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	TNFRSF9	1	7915894	7943165	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	TNFSF10	3	172505508	172523507	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	7	0	FALSE	GAIN	PASS
659_bTo_pair	TNFSF11	13	42562736	42608013	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	TNFSF12	17	7548891	7557890	FALSE	1000	-0.750226164220686	19	7324407	7655594	0.365165917639896	1	0	0.365165917639896	1	0	331187	1	31	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	TNFSF12-TNFSF13	17	7549099	7561601	FALSE	1000	-0.750226164220686	19	7324407	7655594	0.365165917639896	1	0	0.365165917639896	1	0	331187	1	31	14	2	FALSE	HETLOSS	PASS
659_bTo_pair	TNFSF13	17	7558292	7561608	FALSE	1000	-0.750226164220686	19	7324407	7655594	0.365165917639896	1	0	0.365165917639896	1	0	331187	1	31	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	TNFSF13B	13	108251240	108308484	FALSE	842	-0.555564796404534	26	103046205	109206791	NA	2	NA	NA	2	NA	6160586	NA	9	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TNFSF14	19	6661253	6670588	FALSE	1127	1.79995309225966	98	6535069	6665009	0.364342740527346	23	NA	0.364342740527346	23	NA	129940	NA	3	6	2	TRUE	AMP	PASS
659_bTo_pair	TNFSF15	9	114784635	114806126	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	TNFSF18	1	173039960	173050963	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	TNFSF4	1	173183734	173207313	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	TNFSF8	9	114893343	114930595	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	TNFSF9	19	6530999	6535928	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	5	1	TRUE	DIPLOID	PASS
659_bTo_pair	TNIK	3	171061339	171460408	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	34	3	FALSE	GAIN	PASS
659_bTo_pair	TNIP1	5	151029945	151093577	FALSE	350	-0.819899512516675	16	150444373	153997804	0.365165917639896	1	0	0.365165917639896	1	0	3553431	1	25	17	1	FALSE	HETLOSS	PASS
659_bTo_pair	TNIP2	4	2741648	2756376	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	10	1	FALSE	GAIN	PASS
659_bTo_pair	TNIP3	4	121131408	121227466	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	TNK1	17	7380534	7389774	FALSE	1000	-0.750226164220686	19	7324407	7655594	0.365165917639896	1	0	0.365165917639896	1	0	331187	1	31	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	TNK2	3	195863364	195911945	FALSE	269	-0.263219948753545	44	189957970	195888442	0.345317016959666	3	1	0.345317016959666	3	1	5930472	2	31	25	0	TRUE	GAIN	PASS
659_bTo_pair	TNKS	8	9555914	9782346	FALSE	515	-0.798201426688095	16	9008002	10611590	0.365165917639896	1	0	0.365165917639896	1	0	1603588	1	7	29	2	FALSE	HETLOSS	PASS
659_bTo_pair	TNKS1BP1	11	57299638	57324952	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	26	2	FALSE	GAIN	PASS
659_bTo_pair	TNKS2	10	91798312	91865276	FALSE	662	-0.410954559094016	36	89715119	94762760	0.365165917639896	2	0	0.365165917639896	2	0	5047641	2	33	29	0	FALSE	CNLOH	PASS
659_bTo_pair	TNMD	23	100584802	100599885	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	7	1	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	TNN	1	175067858	175148066	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	25	2	FALSE	DIPLOID	PASS
659_bTo_pair	TNNC1	3	52451102	52454070	FALSE	224	-0.84777820586227	13	52412877	52540527	0.365165917639896	1	0	0.365165917639896	1	0	127650	1	7	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	TNNC2	20	45823214	45833745	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	TNNI1	1	201403768	201429866	FALSE	61	-0.50531963543648	34	201209721	201898337	NA	2	NA	NA	2	NA	688616	NA	11	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TNNI2	11	1838989	1841680	FALSE	679	-0.702000712925199	21	1256247	1938477	0.140309795179477	0	0	0.140309795179477	0	0	682230	0	19	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TNNI3	19	55151767	55157773	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	9	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TNNI3K	1	74235401	74544428	FALSE	25	-0.394411030612058	39	74026891	77942032	NA	2	NA	NA	2	NA	3915141	NA	22	26	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TNNT1	19	55132794	55149354	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	12	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TNNT2	1	201359008	201377762	FALSE	61	-0.50531963543648	34	201209721	201898337	NA	2	NA	NA	2	NA	688616	NA	11	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TNNT3	11	1919562	1938706	FALSE	679	-0.702000712925199	21	1256247	1938477	0.140309795179477	0	0	0.140309795179477	0	0	682230	0	19	18	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TNP1	2	216859458	216860064	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	TNP2	16	11267748	11269533	FALSE	953	0.745805771431006	74	11178388	11281274	0.364342740527346	9	NA	0.364342740527346	9	NA	102886	NA	7	3	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	TNPO1	5	72816312	72916733	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	24	0	FALSE	HETLOSS	PASS
659_bTo_pair	TNPO2	19	12699194	12724011	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	23	0	FALSE	DIPLOID	PASS
659_bTo_pair	TNPO3	7	128954180	129055173	FALSE	492	-0.463656181520944	30	126439208	129166764	1	2	1	1	2	1	2727556	1	27	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	TNR	1	175315194	175743770	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	28	1	FALSE	DIPLOID	PASS
659_bTo_pair	TNRC18	7	5306790	5425414	FALSE	453	-0.32600279290147	42	3619174	5500988	0.189552622934988	3	0	0.189552622934988	3	0	1881814	3	12	51	4	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	TNRC6A	16	24610209	24827632	FALSE	960	-0.449512584299377	34	23658521	27234165	NA	2	NA	NA	2	NA	3575644	NA	16	38	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TNRC6B	22	40044817	40335808	FALSE	1267	-0.448885551917151	34	39313004	41087696	NA	2	NA	NA	2	NA	1774692	NA	24	35	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TNRC6C	17	77959240	78108835	FALSE	1080	-0.537824093701074	27	76741010	78870935	1	2	1	1	2	1	2129925	1	20	28	1	FALSE	DIPLOID	PASS
659_bTo_pair	TNS1	2	217799588	218033982	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	38	6	FALSE	HETLOSS	PASS
659_bTo_pair	TNS2	12	53046969	53064372	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	35	0	FALSE	DIPLOID	PASS
659_bTo_pair	TNS3	7	47275154	47582558	FALSE	464	-0.323591849229323	42	45157835	48245556	0.189552622934988	3	0	0.189552622934988	3	0	3087721	3	12	34	5	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	TNS4	17	40475828	40501597	FALSE	1032	0.021285439110795	56	40363122	40620051	0.365165917639896	4	NA	0.365165917639896	4	NA	256929	NA	5	15	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TNXB	6	32041153	32115334	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	72	6	FALSE	HETLOSS	PASS
659_bTo_pair	TOB1	17	50862223	50867978	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TOB2	22	41433492	41447023	FALSE	1269	-0.443951758803067	34	41205309	42514754	NA	2	NA	NA	2	NA	1309445	NA	31	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TOE1	1	45339670	45343975	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	TOGARAM1	14	44962208	45074431	FALSE	858	-0.388807455224718	39	37680254	45134449	NA	2	NA	NA	2	NA	7454195	NA	16	32	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TOGARAM2	2	28956611	29061373	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	24	2	FALSE	DIPLOID	PASS
659_bTo_pair	TOLLIP	11	1274371	1309654	FALSE	679	-0.702000712925199	21	1256247	1938477	0.140309795179477	0	0	0.140309795179477	0	0	682230	0	19	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TOM1	22	35299275	35347994	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	15	0	FALSE	CNLOH	PASS
659_bTo_pair	TOM1L1	17	54899387	54961956	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	16	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TOM1L2	17	17843511	17972422	FALSE	1014	-0.559544539688918	26	17247059	18028347	NA	2	NA	NA	2	NA	781288	NA	10	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TOMM20	1	235109336	235128936	FALSE	81	-0.251586090510492	46	235112135	235194117	0.298322295679939	3	NA	0.298322295679939	3	NA	81982	NA	3	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TOMM20L	14	58395916	58408701	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	TOMM22	22	38681948	38685421	FALSE	1265	-0.53141020507802	29	38041114	39152464	NA	2	NA	NA	2	NA	1111350	NA	31	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TOMM34	20	44942130	44960486	FALSE	1210	-0.476296426145969	34	43513997	45110019	NA	2	NA	NA	2	NA	1596022	NA	26	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TOMM40	19	44890569	44903689	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	10	2	FALSE	HETLOSS	PASS
659_bTo_pair	TOMM40L	1	161225939	161230744	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	TOMM5	9	37582646	37592642	FALSE	595	-0.209027397852981	47	37442028	67884575	0.365165917639896	3	1	0.365165917639896	3	1	30442547	2	35	3	0	FALSE	GAIN	PASS
659_bTo_pair	TOMM6	6	41787662	41789898	FALSE	399	-0.575359055127692	26	41736131	41931766	NA	2	NA	NA	2	NA	195635	NA	9	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TOMM7	7	22812628	22822852	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	3	1	FALSE	GAIN	PASS
659_bTo_pair	TOMM70	3	100363431	100401398	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	14	2	FALSE	GAIN	PASS
659_bTo_pair	TONSL	8	144428775	144444444	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	30	1	FALSE	DIPLOID	PASS
659_bTo_pair	TOP1	20	41028818	41124487	TRUE	1206	1.00025880698112	80	41029025	41124457	0.364342740527346	12	NA	0.364342740527346	12	NA	95432	NA	1	28	1	FALSE	AMP	PASS
659_bTo_pair	TOP1MT	8	143304384	143359979	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	14	4	FALSE	DIPLOID	PASS
659_bTo_pair	TOP2A	17	40388516	40417950	FALSE	1032	0.021285439110795	56	40363122	40620051	0.365165917639896	4	NA	0.365165917639896	4	NA	256929	NA	5	40	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TOP2B	3	25597905	25664907	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	36	0	FALSE	HETLOSS	PASS
659_bTo_pair	TOP3A	17	18271428	18315007	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	21	0	FALSE	CNLOH	PASS
659_bTo_pair	TOP3B	22	21957025	21982816	FALSE	1248	-0.440655178794865	34	21923114	22646364	NA	2	NA	NA	2	NA	723250	NA	7	19	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TOPAZ1	3	44241886	44332098	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	33	0	FALSE	HETLOSS	PASS
659_bTo_pair	TOPBP1	3	133598175	133662380	FALSE	242	-0.32037413513609	40	130560427	134790274	0.308149309490068	3	1	0.308149309490068	3	1	4229847	2	29	32	1	FALSE	GAIN	PASS
659_bTo_pair	TOPORS	9	32540544	32552553	FALSE	585	-0.464842894155678	32	22447079	32572950	0.365165917639896	2	0	0.365165917639896	2	0	10125871	2	19	15	1	FALSE	CNLOH	PASS
659_bTo_pair	TOR1A	9	129812944	129824134	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	TOR1AIP1	1	179882042	179925000	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	TOR1AIP2	1	179839967	179877803	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	TOR1B	9	129803153	129811281	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	TOR2A	9	127731524	127735317	FALSE	619	-0.820686000870706	14	125203036	127778681	0.365165917639896	1	0	0.365165917639896	1	0	2575645	1	23	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	TOR3A	1	179081377	179098023	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	9	2	TRUE	DIPLOID	PASS
659_bTo_pair	TOR4A	9	137277749	137282641	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	TOX	8	58805418	59119208	FALSE	549	1.30597795969727	86	58807830	59119029	0.364342740527346	15	NA	0.364342740527346	15	NA	311199	NA	1	12	0	FALSE	AMP	PASS
659_bTo_pair	TOX2	20	43914864	44069616	FALSE	1210	-0.476296426145969	34	43513997	45110019	NA	2	NA	NA	2	NA	1596022	NA	26	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TOX3	16	52438005	52547802	FALSE	968	-0.505434692233225	30	51151209	56683230	1	2	1	1	2	1	5532021	1	34	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	TOX4	14	21476597	21499175	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	16	3	FALSE	DIPLOID	PASS
659_bTo_pair	TP53	17	7661779	7687550	TRUE	1001	1.81828351212047	100	7655836	7689042	0.364342740527346	23	NA	0.364342740527346	23	NA	33206	NA	3	41	2	FALSE	AMP	PASS
659_bTo_pair	TP53AIP1	11	128934731	128943399	FALSE	734	-0.516486951202814	27	128842412	134387591	1	2	1	1	2	1	5545179	1	27	5	2	FALSE	DIPLOID	PASS
659_bTo_pair	TP53BP1	15	43403061	43510728	TRUE	901	1.29592496152089	86	43403196	43510636	0.364342740527346	15	NA	0.364342740527346	15	NA	107440	NA	2	62	3	FALSE	AMP	PASS
659_bTo_pair	TP53BP2	1	223779899	223845972	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	22	2	FALSE	DIPLOID	PASS
659_bTo_pair	TP53I11	11	44885903	44951306	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	TP53I13	17	29566052	29573157	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	TP53I3	2	24077433	24085861	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TP53INP1	8	94925972	94949411	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	5	0	FALSE	GAIN	PASS
659_bTo_pair	TP53INP2	20	34704290	34713439	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	TP53RK	20	46684365	46689779	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	TP53TG3D	16	32252719	32255922	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	TP53TG5	20	45372563	45407889	FALSE	1213	-0.238233999759016	46	45348351	45515632	0.298322295679939	3	NA	0.298322295679939	3	NA	167281	NA	8	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TP63	3	189631416	189897279	TRUE	267	0.0196500930294615	56	188406158	189873033	0.365165917639896	4	NA	0.365165917639896	4	NA	1466875	NA	3	46	2	TRUE	GAIN (many states)	PASS
659_bTo_pair	TP73	1	3652520	3736201	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	16	5	FALSE	DIPLOID	PASS
659_bTo_pair	TPBG	6	82363206	82370828	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	TPBGL	11	75240905	75243697	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	5	0	FALSE	GAIN	PASS
659_bTo_pair	TPCN1	12	113221050	113298585	FALSE	806	-0.481242901669781	30	113099979	114403736	1	2	1	1	2	1	1303757	1	13	26	1	FALSE	DIPLOID	PASS
659_bTo_pair	TPCN2	11	69048897	69162440	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	25	3	FALSE	GAIN	PASS
659_bTo_pair	TPD52	8	80034745	80231232	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	9	1	FALSE	GAIN	PASS
659_bTo_pair	TPD52L1	6	125119049	125264407	FALSE	421	-0.534093125771784	29	117482879	126348569	NA	2	NA	NA	2	NA	8865690	NA	29	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TPD52L2	20	63865228	63891545	FALSE	1225	-0.32421417626258	43	63733191	64273510	0.192136715055622	3	NA	0.192136715055622	3	NA	540319	NA	22	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TPD52L3	9	6328375	6331900	FALSE	579	-0.757785700087963	19	5656721	7798588	0.365165917639896	1	0	0.365165917639896	1	0	2141867	1	11	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	TPGS1	19	507497	519654	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TPGS2	18	36777647	36829216	FALSE	1096	-1.21893607076254	6	36730705	37565641	0.365165917639896	0	0	0.365165917639896	0	0	834936	0	4	13	0	FALSE	HOMDEL	PASS
659_bTo_pair	TPH1	11	18017564	18042426	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	TPH2	12	71938846	72186618	FALSE	792	-0.349776929755415	43	71610399	76348235	0.192136715055622	3	NA	0.192136715055622	3	NA	4737836	NA	18	11	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	TPI1	12	6867119	6870948	FALSE	743	-0.145896859645485	51	6620180	6938488	0.365165917639896	3	NA	0.365165917639896	3	NA	318308	NA	20	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TPK1	7	144451941	144836395	FALSE	504	-0.812834819860627	15	143573123	148800568	0.21938209893867	0	0	0.21938209893867	0	0	5227445	0	25	11	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TPM1	15	63042632	63071915	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	TPM2	9	35681992	35690121	FALSE	590	0.518634267342274	67	35107891	35683151	0.364342740527346	7	2	0.364342740527346	7	2	575260	5	11	11	1	TRUE	AMP	PASS
659_bTo_pair	TPM3	1	154155304	154194648	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	TPM4	19	16067021	16103005	FALSE	1152	-0.702482358931041	22	15914366	16234459	0.291335969972972	1	0	0.291335969972972	1	0	320093	1	8	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	TPMT	6	18128311	18155074	FALSE	370	-0.377368469329801	39	15246548	20212233	NA	2	NA	NA	2	NA	4965685	NA	18	8	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TPO	2	1374066	1543711	FALSE	89	-0.524158836377085	27	41620	3847167	1	2	1	1	2	1	3805547	1	18	21	3	FALSE	DIPLOID	PASS
659_bTo_pair	TPP1	11	6612763	6619485	FALSE	682	-0.308581000695747	43	6240079	6614875	0.192136715055622	3	NA	0.192136715055622	3	NA	374796	NA	15	14	1	TRUE	GAIN (many states)	PASS
659_bTo_pair	TPP2	13	102597003	102679958	FALSE	840	-0.335776033141145	43	102193037	102839809	0.192136715055622	3	NA	0.192136715055622	3	NA	646772	NA	9	32	5	FALSE	GAIN (many states)	PASS
659_bTo_pair	TPPP	5	659862	693395	FALSE	308	-0.255094097331532	44	92297	1246091	0.345317016959666	3	1	0.345317016959666	3	1	1153794	2	18	4	2	FALSE	GAIN	PASS
659_bTo_pair	TPPP2	14	21024109	21036276	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	TPPP3	16	67389809	67393535	FALSE	976	-0.467350965811123	34	67110264	67538977	NA	2	NA	NA	2	NA	428713	NA	24	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TPR	1	186311652	186375693	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	56	2	FALSE	DIPLOID	PASS
659_bTo_pair	TPRA1	3	127571266	127598267	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	11	0	FALSE	GAIN	PASS
659_bTo_pair	TPRG1	3	188947214	189325304	FALSE	267	0.0196500930294615	56	188406158	189873033	0.365165917639896	4	NA	0.365165917639896	4	NA	1466875	NA	3	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TPRG1L	1	3625002	3630127	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	TPRKB	2	73729104	73737400	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	TPRN	9	137191617	137204193	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	TPRX1	19	47801243	47819051	FALSE	1187	-0.64296711085636	26	47021158	48297657	NA	2	NA	NA	2	NA	1276499	NA	31	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TPSAB1	16	1240696	1242554	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	6	4	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TPSB2	16	1227272	1230184	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	5	5	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TPSD1	16	1256059	1258998	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	6	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TPSG1	16	1221651	1225257	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	9	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TPST1	7	66205199	66420543	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	TPST2	22	26521983	26596717	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	8	0	FALSE	CNLOH	PASS
659_bTo_pair	TPT1	13	45333471	45341370	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	TPTE	21	10521553	10606140	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	21	3	FALSE	DIPLOID	PASS
659_bTo_pair	TPTE2	13	19422877	19536762	FALSE	819	-0.883807164728579	13	19173884	20902691	0.365165917639896	1	0	0.365165917639896	1	0	1728807	1	14	20	0	FALSE	HETLOSS	PASS
659_bTo_pair	TPTEP2-CSNK1E	22	38291918	38398522	FALSE	1265	-0.53141020507802	29	38041114	39152464	NA	2	NA	NA	2	NA	1111350	NA	31	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TPX2	20	31739271	31801805	FALSE	1201	-0.583226555890856	26	31757461	32331296	NA	2	NA	NA	2	NA	573835	NA	13	17	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TRA2A	7	23504780	23532041	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	8	0	FALSE	GAIN	PASS
659_bTo_pair	TRA2B	3	185915906	185938136	FALSE	261	-0.625921534938974	26	185491707	185937908	NA	2	NA	NA	2	NA	446201	NA	5	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TRABD	22	50185915	50199598	FALSE	1271	-0.350898193716427	41	45922979	50285791	0.284729887459054	3	0	0.284729887459054	3	0	4362812	3	30	10	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	TRABD2A	2	84821650	84907008	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	TRABD2B	1	47760528	47996895	FALSE	16	-0.485631979032023	30	46175602	48453048	1	2	1	1	2	1	2277446	1	32	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	TRADD	16	67154180	67160298	FALSE	976	-0.467350965811123	34	67110264	67538977	NA	2	NA	NA	2	NA	428713	NA	24	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TRAF1	9	120902393	120929173	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	TRAF2	9	136881912	136926607	FALSE	632	0.0629388935581104	59	136886484	136946542	0.308533751035793	5	NA	0.308533751035793	5	NA	60058	NA	3	14	0	FALSE	AMP (many states)	PASS
659_bTo_pair	TRAF3	14	102777476	102911500	TRUE	879	2.05717363847252	105	102777609	102911396	0.364342740527346	28	NA	0.364342740527346	28	NA	133787	NA	1	40	6	FALSE	AMP	PASS
659_bTo_pair	TRAF3IP1	2	238320441	238400900	FALSE	190	-0.691419458816616	21	236392006	238848635	0.140309795179477	0	0	0.140309795179477	0	0	2456629	0	22	19	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TRAF3IP2	6	111556454	111606278	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	TRAF3IP3	1	209756032	209782320	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	TRAF4	17	28743984	28750958	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	TRAF5	1	211326615	211374946	TRUE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	TRAF6	11	36487027	36510272	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	TRAF7	16	2155698	2178129	FALSE	941	1.39373063137147	87	2155784	2178184	0.364342740527346	16	NA	0.364342740527346	16	NA	22400	NA	2	28	0	FALSE	AMP	PASS
659_bTo_pair	TRAFD1	12	112125501	112153609	FALSE	802	-0.463173510714366	34	111455064	112408626	NA	2	NA	NA	2	NA	953562	NA	12	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TRAIP	3	49828599	49856574	FALSE	220	-0.761977046834943	19	49697158	49862323	0.365165917639896	1	0	0.365165917639896	1	0	165165	1	9	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	TRAK1	3	42013802	42225889	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	26	3	FALSE	HETLOSS	PASS
659_bTo_pair	TRAK2	2	201377207	201451579	FALSE	166	-0.425780118113581	30	201288659	203854096	1	2	1	1	2	1	2565437	1	22	19	4	FALSE	DIPLOID	PASS
659_bTo_pair	TRAM1	8	70573442	70608387	FALSE	553	-0.248188717260806	46	68331252	73878866	0.298322295679939	3	NA	0.298322295679939	3	NA	5547614	NA	20	11	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TRAM1L1	4	117083554	117085576	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	TRAM2	6	52497402	52576915	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	TRANK1	3	36826820	36945098	FALSE	209	-0.637968449787088	26	31990360	37328493	NA	2	NA	NA	2	NA	5338133	NA	26	46	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TRAP1	16	3651639	3717597	FALSE	946	-0.822341693918626	16	3616614	3717461	0.365165917639896	1	0	0.365165917639896	1	0	100847	1	2	26	0	FALSE	HETLOSS	PASS
659_bTo_pair	TRAPPC1	17	7930345	7932123	FALSE	1002	-0.806633716627379	14	7689340	8047671	0.365165917639896	1	0	0.365165917639896	1	0	358331	1	15	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	TRAPPC10	21	44012319	44106552	FALSE	1234	-0.544212636077936	27	41740855	44141314	1	2	1	1	2	1	2400459	1	31	22	2	FALSE	DIPLOID	PASS
659_bTo_pair	TRAPPC11	4	183659267	183713594	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	28	1	FALSE	HETLOSS	PASS
659_bTo_pair	TRAPPC12	2	3379675	3485094	FALSE	89	-0.524158836377085	27	41620	3847167	1	2	1	1	2	1	3805547	1	18	15	2	FALSE	DIPLOID	PASS
659_bTo_pair	TRAPPC13	5	65624716	65666233	FALSE	323	-0.645106866010582	25	58495036	67196614	0.365165917639896	1	0	0.365165917639896	1	0	8701578	1	31	13	1	FALSE	HETLOSS	PASS
659_bTo_pair	TRAPPC2	23	13712244	13734635	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	5	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	TRAPPC2B	19	57363511	57365353	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	2	1	FALSE	GAIN	PASS
659_bTo_pair	TRAPPC2L	16	88856220	88862686	FALSE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	TRAPPC3	1	36136570	36156053	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	5	2	FALSE	DIPLOID	PASS
659_bTo_pair	TRAPPC3L	6	116494989	116545610	FALSE	417	-0.520434008170675	29	114058103	117272433	NA	2	NA	NA	2	NA	3214330	NA	20	11	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TRAPPC4	11	119018432	119025454	FALSE	728	-0.487905654975058	30	118527582	119195409	1	2	1	1	2	1	667827	1	26	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	TRAPPC5	19	7680843	7687703	FALSE	1130	-0.690953718254595	21	7440128	7870576	0.140309795179477	0	0	0.140309795179477	0	0	430448	0	25	3	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TRAPPC6A	19	45162928	45178237	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	TRAPPC6B	14	39147811	39170532	FALSE	858	-0.388807455224718	39	37680254	45134449	NA	2	NA	NA	2	NA	7454195	NA	16	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TRAPPC8	18	31829173	31953136	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	32	3	FALSE	GAIN	PASS
659_bTo_pair	TRAPPC9	8	139727725	140458579	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	27	1	FALSE	DIPLOID	PASS
659_bTo_pair	TRARG1	17	1279663	1300987	FALSE	996	-0.883704003468192	13	148164	1298296	0.365165917639896	1	0	0.365165917639896	1	0	1150132	1	14	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	TRAT1	3	108822698	108855005	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	7	0	FALSE	GAIN	PASS
659_bTo_pair	TRDMT1	10	17142254	17202054	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	13	2	FALSE	CNLOH	PASS
659_bTo_pair	TRDN	6	123216339	123637093	FALSE	421	-0.534093125771784	29	117482879	126348569	NA	2	NA	NA	2	NA	8865690	NA	29	43	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TREH	11	118657316	118679690	FALSE	728	-0.487905654975058	30	118527582	119195409	1	2	1	1	2	1	667827	1	26	15	3	FALSE	DIPLOID	PASS
659_bTo_pair	TREM1	6	41267926	41286719	FALSE	397	-0.509151429367598	27	37213022	41687167	1	2	1	1	2	1	4474145	1	33	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	TREM2	6	41158506	41163186	FALSE	397	-0.509151429367598	27	37213022	41687167	1	2	1	1	2	1	4474145	1	33	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	TREML1	6	41149342	41154337	FALSE	397	-0.509151429367598	27	37213022	41687167	1	2	1	1	2	1	4474145	1	33	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	TREML2	6	41190277	41201194	FALSE	397	-0.509151429367598	27	37213022	41687167	1	2	1	1	2	1	4474145	1	33	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	TREML4	6	41228324	41238882	FALSE	397	-0.509151429367598	27	37213022	41687167	1	2	1	1	2	1	4474145	1	33	6	4	FALSE	DIPLOID	PASS
659_bTo_pair	TRERF1	6	42224931	42452051	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	23	1	FALSE	DIPLOID	PASS
659_bTo_pair	TREX1	3	48465811	48467645	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	TREX2	23	153444720	153470587	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	13	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	TRH	3	129974305	129977938	FALSE	240	-0.311262736248051	40	128620554	130098189	0.308149309490068	3	1	0.308149309490068	3	1	1477635	2	22	4	1	FALSE	GAIN	PASS
659_bTo_pair	TRHDE	12	72087266	72670757	FALSE	792	-0.349776929755415	43	71610399	76348235	0.192136715055622	3	NA	0.192136715055622	3	NA	4737836	NA	18	22	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	TRHR	8	109086621	109119584	FALSE	561	-0.210477706860293	47	102652438	116770243	0.365165917639896	3	1	0.365165917639896	3	1	14117805	2	32	5	0	FALSE	GAIN	PASS
659_bTo_pair	TRIAP1	12	120443961	120446412	FALSE	810	-0.438737881374958	34	120127967	120903912	NA	2	NA	NA	2	NA	775945	NA	20	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TRIB1	8	125430321	125438405	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	6	0	FALSE	GAIN	PASS
659_bTo_pair	TRIB2	2	12716889	12742734	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	TRIB3	20	362835	397559	FALSE	1195	-0.60512265366003	23	87765	1537211	0.186356639256811	1	0	0.186356639256811	1	0	1449446	1	33	7	2	FALSE	HETLOSS	PASS
659_bTo_pair	TRIL	7	28953358	28958292	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	10	1	FALSE	GAIN	PASS
659_bTo_pair	TRIM10	6	30151945	30160934	FALSE	377	-0.687880370218139	22	29953381	30346790	0.291335969972972	1	0	0.291335969972972	1	0	393409	1	11	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	TRIM11	1	228393673	228406840	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	TRIM13	13	49995888	50020481	FALSE	835	-0.766581964775609	19	48490223	50953919	0.365165917639896	1	0	0.365165917639896	1	0	2463696	1	18	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	TRIM14	9	98069275	98119212	FALSE	608	-0.541405085979946	27	95522076	99069752	1	2	1	1	2	1	3547676	1	31	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	TRIM15	6	30163206	30172696	FALSE	377	-0.687880370218139	22	29953381	30346790	0.291335969972972	1	0	0.291335969972972	1	0	393409	1	11	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	TRIM16	17	15627960	15684311	FALSE	1009	-0.493836167698037	33	12666172	16027364	0.344071079426502	2	0	0.344071079426502	2	0	3361192	2	21	11	0	FALSE	CNLOH	PASS
659_bTo_pair	TRIM16L	17	18697998	18736118	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	9	0	FALSE	CNLOH	PASS
659_bTo_pair	TRIM17	1	228407940	228416861	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	TRIM2	4	153152342	153339320	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	TRIM21	11	4384897	4393696	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	TRIM22	11	5689689	5737089	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	TRIM23	5	65589680	65625975	FALSE	323	-0.645106866010582	25	58495036	67196614	0.365165917639896	1	0	0.365165917639896	1	0	8701578	1	31	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	TRIM24	7	138460334	138589993	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	21	1	FALSE	DIPLOID	PASS
659_bTo_pair	TRIM25	17	56836387	56914080	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	23	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TRIM26	6	30184455	30213427	FALSE	377	-0.687880370218139	22	29953381	30346790	0.291335969972972	1	0	0.291335969972972	1	0	393409	1	11	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	TRIM27	6	28903002	28923989	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	TRIM28	19	58544091	58550722	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	16	1	FALSE	GAIN	PASS
659_bTo_pair	TRIM29	11	120111275	120185529	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	TRIM3	11	6448613	6474459	FALSE	682	-0.308581000695747	43	6240079	6614875	0.192136715055622	3	NA	0.192136715055622	3	NA	374796	NA	15	14	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TRIM31	6	30102897	30113106	FALSE	377	-0.687880370218139	22	29953381	30346790	0.291335969972972	1	0	0.291335969972972	1	0	393409	1	11	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	TRIM32	9	116687302	116701300	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	TRIM33	1	114392777	114511160	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	23	0	FALSE	HETLOSS	PASS
659_bTo_pair	TRIM34	11	5619764	5644398	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	TRIM35	8	27284887	27311319	FALSE	522	-0.616914645700195	26	26383178	27467373	NA	2	NA	NA	2	NA	1084195	NA	8	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TRIM36	5	115124762	115180546	FALSE	331	-0.706980197323045	20	112861366	122075379	0.365165917639896	1	0	0.365165917639896	1	0	9214013	1	31	18	1	FALSE	HETLOSS	PASS
659_bTo_pair	TRIM37	17	58982638	59106921	FALSE	1058	-0.423419268198233	34	58422367	59890994	NA	2	NA	NA	2	NA	1468627	NA	20	27	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TRIM38	6	25962802	25991226	FALSE	373	-0.695027086668472	22	24174718	26017145	0.291335969972972	1	0	0.291335969972972	1	0	1842427	1	23	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	TRIM39	6	30326479	30343729	FALSE	377	-0.687880370218139	22	29953381	30346790	0.291335969972972	1	0	0.291335969972972	1	0	393409	1	11	10	2	FALSE	HETLOSS	PASS
659_bTo_pair	TRIM39-RPP21	6	30328907	30346854	FALSE	377	-0.687880370218139	22	29953381	30346790	0.291335969972972	1	0	0.291335969972972	1	0	393409	1	11	14	3	FALSE	HETLOSS	PASS
659_bTo_pair	TRIM4	7	99876958	99919600	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	TRIM40	6	30136108	30148735	FALSE	377	-0.687880370218139	22	29953381	30346790	0.291335969972972	1	0	0.291335969972972	1	0	393409	1	11	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	TRIM41	5	181222499	181235809	FALSE	363	-0.662769973757303	22	180739384	181260807	0.291335969972972	1	0	0.291335969972972	1	0	521423	1	12	13	2	FALSE	HETLOSS	PASS
659_bTo_pair	TRIM42	3	140678039	140701150	FALSE	246	-0.322519280750539	43	139344000	142447976	0.192136715055622	3	NA	0.192136715055622	3	NA	3103976	NA	19	11	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TRIM43	2	95592018	95599778	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	TRIM43B	2	95476967	95484731	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	TRIM44	11	35662805	35818007	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	TRIM45	1	117111060	117122587	FALSE	39	-0.830052301686955	16	116577512	117118673	0.365165917639896	1	0	0.365165917639896	1	0	541161	1	6	10	2	TRUE	HETLOSS	PASS
659_bTo_pair	TRIM46	1	155173787	155184971	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	TRIM47	17	75874161	75878575	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	11	2	FALSE	DIPLOID	PASS
659_bTo_pair	TRIM48	11	55262182	55271119	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	TRIM49	11	89797655	89808575	FALSE	714	-0.230278951577934	46	86306357	90211282	0.298322295679939	3	NA	0.298322295679939	3	NA	3904925	NA	21	7	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	TRIM49B	11	49027501	49038451	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	TRIM49C	11	90031106	90042025	FALSE	714	-0.230278951577934	46	86306357	90211282	0.298322295679939	3	NA	0.298322295679939	3	NA	3904925	NA	21	7	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	TRIM49D1	11	89911111	89921767	FALSE	714	-0.230278951577934	46	86306357	90211282	0.298322295679939	3	NA	0.298322295679939	3	NA	3904925	NA	21	2	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	TRIM5	11	5663557	5938619	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	59	10	FALSE	HETLOSS	PASS
659_bTo_pair	TRIM50	7	73312539	73328082	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	TRIM51	11	55883297	55891810	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	TRIM51GP	11	48975324	48983826	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	TRIM52	5	181254417	181261139	FALSE	363	-0.662769973757303	22	180739384	181260807	0.291335969972972	1	0	0.291335969972972	1	0	521423	1	12	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	TRIM54	2	27282392	27307439	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	TRIM55	8	66126896	66175487	FALSE	550	-0.186881774239562	48	60208949	67746087	0.365165917639896	3	NA	0.365165917639896	3	NA	7537138	NA	33	13	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TRIM56	7	101085439	101097967	FALSE	484	-0.570670723449775	26	101042591	102111653	NA	2	NA	NA	2	NA	1069062	NA	15	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TRIM58	1	247857199	247878205	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	TRIM59	3	160432445	160485773	FALSE	250	-0.231905273142314	46	156829339	161250770	0.298322295679939	3	NA	0.298322295679939	3	NA	4421431	NA	26	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TRIM6	11	5596109	5612958	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	TRIM6-TRIM34	11	5596725	5644398	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	TRIM60	4	165016458	165041744	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	TRIM61	4	164954446	164977668	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	TRIM62	1	33145402	33182059	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	TRIM63	1	26051304	26068436	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	TRIM64	11	89968502	89975228	FALSE	714	-0.230278951577934	46	86306357	90211282	0.298322295679939	3	NA	0.298322295679939	3	NA	3904925	NA	21	1	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	TRIM64B	11	89869282	89876017	FALSE	714	-0.230278951577934	46	86306357	90211282	0.298322295679939	3	NA	0.298322295679939	3	NA	3904925	NA	21	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TRIM64C	11	49053714	49059112	FALSE	695	-0.504356726743758	30	46752632	56276674	1	2	1	1	2	1	9524042	1	71	9	2	FALSE	DIPLOID	PASS
659_bTo_pair	TRIM65	17	75880335	75897003	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	9	3	FALSE	DIPLOID	PASS
659_bTo_pair	TRIM66	11	8612037	8682694	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	25	3	FALSE	DIPLOID	PASS
659_bTo_pair	TRIM67	1	231162112	231221556	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	19	4	FALSE	HETLOSS	PASS
659_bTo_pair	TRIM68	11	4598672	4608259	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	TRIM69	15	44728988	44767829	FALSE	904	-0.666047806656427	20	44736698	49422632	0.365165917639896	1	0	0.365165917639896	1	0	4685934	1	30	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	TRIM7	5	181193924	181205293	FALSE	363	-0.662769973757303	22	180739384	181260807	0.291335969972972	1	0	0.291335969972972	1	0	521423	1	12	11	2	FALSE	HETLOSS	PASS
659_bTo_pair	TRIM71	3	32818018	32897826	FALSE	209	-0.637968449787088	26	31990360	37328493	NA	2	NA	NA	2	NA	5338133	NA	26	12	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TRIM72	16	31214021	31231537	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	TRIM73	7	75395063	75410996	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	4	2	FALSE	DIPLOID	PASS
659_bTo_pair	TRIM74	7	72959485	72969466	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	TRIM77	11	89710299	89717872	FALSE	714	-0.230278951577934	46	86306357	90211282	0.298322295679939	3	NA	0.298322295679939	3	NA	3904925	NA	21	8	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	TRIM8	10	102642310	102660680	FALSE	668	2.05905819665372	105	102504164	102645101	0.364342740527346	28	NA	0.364342740527346	28	NA	140937	NA	2	10	0	TRUE	AMP	PASS
659_bTo_pair	TRIM9	14	50975262	51096061	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	TRIML1	4	188139419	188147743	FALSE	307	-0.829378869737769	16	188002775	190026761	0.365165917639896	1	0	0.365165917639896	1	0	2023986	1	5	11	2	FALSE	HETLOSS	PASS
659_bTo_pair	TRIML2	4	188091273	188109603	FALSE	307	-0.829378869737769	16	188002775	190026761	0.365165917639896	1	0	0.365165917639896	1	0	2023986	1	5	12	3	FALSE	HETLOSS	PASS
659_bTo_pair	TRIO	5	14143702	14532128	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	67	6	FALSE	GAIN	PASS
659_bTo_pair	TRIOBP	22	37696988	37776556	FALSE	1263	-0.528184158498335	29	36991204	37967644	NA	2	NA	NA	2	NA	976440	NA	31	41	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TRIP10	19	6737925	6751526	FALSE	1128	-0.566723388755247	23	6665178	7083719	0.186356639256811	1	0	0.186356639256811	1	0	418541	1	13	16	1	FALSE	HETLOSS	PASS
659_bTo_pair	TRIP11	14	91965991	92040896	FALSE	870	-0.471399657488227	30	81180359	92000019	1	2	1	1	2	1	10819660	1	29	34	2	TRUE	DIPLOID	PASS
659_bTo_pair	TRIP12	2	229763838	229923239	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	46	0	FALSE	DIPLOID	PASS
659_bTo_pair	TRIP13	5	892643	919357	TRUE	308	-0.255094097331532	44	92297	1246091	0.345317016959666	3	1	0.345317016959666	3	1	1153794	2	18	14	1	FALSE	GAIN	PASS
659_bTo_pair	TRIP4	15	64387748	64455303	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	TRIP6	7	100867138	100873454	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	TRIQK	8	92883530	93017673	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	3	0	FALSE	GAIN	PASS
659_bTo_pair	TRIR	19	12730640	12734775	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	TRIT1	1	39838110	39883511	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	TRMO	9	97904489	97922570	FALSE	608	-0.541405085979946	27	95522076	99069752	1	2	1	1	2	1	3547676	1	31	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	TRMT1	19	13104902	13117567	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	15	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TRMT10A	4	99546709	99564032	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	TRMT10B	9	37753803	37778972	FALSE	595	-0.209027397852981	47	37442028	67884575	0.365165917639896	3	1	0.365165917639896	3	1	30442547	2	35	8	0	FALSE	GAIN	PASS
659_bTo_pair	TRMT10C	3	101561862	101566446	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	5	0	FALSE	GAIN	PASS
659_bTo_pair	TRMT11	6	125986430	126203817	FALSE	421	-0.534093125771784	29	117482879	126348569	NA	2	NA	NA	2	NA	8865690	NA	29	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TRMT112	11	64316460	64318084	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TRMT12	8	124450820	124462150	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	6	2	FALSE	GAIN	PASS
659_bTo_pair	TRMT13	1	100133150	100150497	FALSE	31	-0.34979279123772	43	94820443	100270584	0.192136715055622	3	NA	0.192136715055622	3	NA	5450141	NA	22	14	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TRMT1L	1	185118098	185157072	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	TRMT2A	22	20111866	20117392	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	14	0	FALSE	CNLOH	PASS
659_bTo_pair	TRMT2B	23	101009346	101052116	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	13	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	TRMT44	4	8436140	8493531	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	15	1	FALSE	GAIN	PASS
659_bTo_pair	TRMT5	14	60971451	60981358	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	TRMT6	20	5937235	5950558	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	TRMT61A	14	103529184	103537073	FALSE	881	-0.341614784223633	43	103502897	103687181	0.192136715055622	3	NA	0.192136715055622	3	NA	184284	NA	7	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TRMT61B	2	28849821	28870301	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	11	2	FALSE	DIPLOID	PASS
659_bTo_pair	TRMT9B	8	12945642	13031503	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	7	5	FALSE	HETLOSS	PASS
659_bTo_pair	TRMU	22	46330875	46357340	FALSE	1271	-0.350898193716427	41	45922979	50285791	0.284729887459054	3	0	0.284729887459054	3	0	4362812	3	30	10	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	TRNAU1AP	1	28553085	28578545	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	TRNP1	1	26993707	27000898	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	TRNT1	3	3126916	3150879	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	TRO	23	54920462	54931431	FALSE	1303	0.0232492223836125	56	53426353	57488811	0.365165917639896	4	NA	0.365165917639896	4	NA	4062458	NA	32	25	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	TROAP	12	49323236	49331731	FALSE	770	-0.500134310902258	34	49065087	50081631	NA	2	NA	NA	2	NA	1016544	NA	25	18	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TROVE2	1	193059422	193091777	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	14	2	FALSE	DIPLOID	PASS
659_bTo_pair	TRPA1	8	72019917	72075617	FALSE	553	-0.248188717260806	46	68331252	73878866	0.298322295679939	3	NA	0.298322295679939	3	NA	5547614	NA	20	27	3	FALSE	GAIN (many states)	PASS
659_bTo_pair	TRPC1	3	142724074	142807888	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	15	0	FALSE	GAIN	PASS
659_bTo_pair	TRPC3	4	121879027	121951754	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	TRPC4	13	37636636	37870425	FALSE	830	-0.745621963362667	19	32401848	39788354	0.365165917639896	1	0	0.365165917639896	1	0	7386506	1	30	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	TRPC4AP	20	35002404	35092871	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	21	0	FALSE	DIPLOID	PASS
659_bTo_pair	TRPC5	23	111774315	112082776	FALSE	1326	0.081501992784242	59	111246621	119452040	0.308533751035793	5	NA	0.308533751035793	5	NA	8205419	NA	28	20	0	FALSE	AMP (many states)	PASS
659_bTo_pair	TRPC5OS	23	111876051	111903990	FALSE	1326	0.081501992784242	59	111246621	119452040	0.308533751035793	5	NA	0.308533751035793	5	NA	8205419	NA	28	2	0	FALSE	AMP (many states)	PASS
659_bTo_pair	TRPC6	11	101451564	101872562	FALSE	719	-0.636863435721755	26	101453066	102083149	NA	2	NA	NA	2	NA	630083	NA	4	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TRPC7	5	136213320	136365545	FALSE	336	-0.752536733071469	19	135941639	138575278	0.365165917639896	1	0	0.365165917639896	1	0	2633639	1	24	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	TRPM1	15	31001061	31161273	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	37	0	FALSE	HETLOSS	PASS
659_bTo_pair	TRPM2	21	44350163	44443081	FALSE	1236	-0.500794339727727	30	44229616	44592452	1	2	1	1	2	1	362836	1	14	36	1	FALSE	DIPLOID	PASS
659_bTo_pair	TRPM3	9	70529063	71446904	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	35	0	FALSE	DIPLOID	PASS
659_bTo_pair	TRPM4	19	49157741	49211836	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	29	1	FALSE	HETLOSS	PASS
659_bTo_pair	TRPM5	11	2404515	2423045	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	26	2	FALSE	HETLOSS	PASS
659_bTo_pair	TRPM6	9	74722495	74888094	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	50	2	FALSE	DIPLOID	PASS
659_bTo_pair	TRPM7	15	50552473	50686815	FALSE	906	-0.753975485974629	19	49508303	51105073	0.365165917639896	1	0	0.365165917639896	1	0	1596770	1	12	44	2	FALSE	HETLOSS	PASS
659_bTo_pair	TRPM8	2	233917398	234019522	FALSE	189	-0.580904316133535	23	233779383	236380649	0.186356639256811	1	0	0.186356639256811	1	0	2601266	1	10	27	4	FALSE	HETLOSS	PASS
659_bTo_pair	TRPS1	8	115408496	115809673	FALSE	561	-0.210477706860293	47	102652438	116770243	0.365165917639896	3	1	0.365165917639896	3	1	14117805	2	32	20	0	FALSE	GAIN	PASS
659_bTo_pair	TRPT1	11	64223799	64226254	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TRPV1	17	3565444	3609411	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	18	3	FALSE	HETLOSS	PASS
659_bTo_pair	TRPV2	17	16415542	16437003	FALSE	1012	-0.646922995033775	26	16234077	17184849	NA	2	NA	NA	2	NA	950772	NA	11	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TRPV3	17	3510502	3557995	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	19	2	FALSE	HETLOSS	PASS
659_bTo_pair	TRPV4	12	109783085	109833401	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	19	1	FALSE	DIPLOID	PASS
659_bTo_pair	TRPV5	7	142908101	142933808	FALSE	501	-0.513243901966068	29	142219948	142940594	NA	2	NA	NA	2	NA	720646	NA	9	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TRPV6	7	142871203	142885762	FALSE	501	-0.513243901966068	29	142219948	142940594	NA	2	NA	NA	2	NA	720646	NA	9	19	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TRRAP	7	98877933	99050831	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	88	4	FALSE	HETLOSS	PASS
659_bTo_pair	TRUB1	10	114938193	114977676	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	10	0	FALSE	CNLOH	PASS
659_bTo_pair	TRUB2	9	128305161	128322742	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	TSACC	1	156337314	156346995	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	TSC1	9	132891348	132946874	TRUE	626	1.22221247791504	84	132891094	132947245	0.364342740527346	14	NA	0.364342740527346	14	NA	56151	NA	2	62	8	FALSE	AMP	PASS
659_bTo_pair	TSC2	16	2047465	2089487	TRUE	939	1.0597239568491	81	2039996	2089975	0.364342740527346	12	NA	0.364342740527346	12	NA	49979	NA	3	68	0	FALSE	AMP	PASS
659_bTo_pair	TSC22D1	13	44432143	44577147	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	17	1	FALSE	HETLOSS	PASS
659_bTo_pair	TSC22D2	3	150408335	150466431	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	12	0	FALSE	GAIN	PASS
659_bTo_pair	TSC22D3	23	107713221	107777342	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	TSC22D4	7	100463359	100479279	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	TSEN15	1	184051651	184123978	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	TSEN2	3	12484432	12539623	FALSE	203	-1.28979799478101	5	12489873	12576710	0.365165917639896	0	0	0.365165917639896	0	0	86837	0	3	13	0	FALSE	HOMDEL	PASS
659_bTo_pair	TSEN34	19	54189938	54194536	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	TSEN54	17	75516060	75524739	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	TSFM	12	57782589	57808071	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	17	2	FALSE	DIPLOID	PASS
659_bTo_pair	TSG101	11	18468336	18527232	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	15	2	FALSE	DIPLOID	PASS
659_bTo_pair	TSGA10	2	98997261	99154964	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	22	0	FALSE	DIPLOID	PASS
659_bTo_pair	TSGA10IP	11	65945445	65959963	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	11	1	FALSE	GAIN	PASS
659_bTo_pair	TSGA13	7	130668648	130687432	FALSE	494	-0.536776174448359	29	129225418	130685270	NA	2	NA	NA	2	NA	1459852	NA	17	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TSHB	1	115029824	115034309	FALSE	37	-0.781726809773331	16	114718157	116404480	0.365165917639896	1	0	0.365165917639896	1	0	1686323	1	12	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	TSHR	14	80954989	81146302	FALSE	869	2.39163365148751	112	80955490	81146363	0.364342740527346	36	NA	0.364342740527346	36	NA	190873	NA	2	33	2	FALSE	AMP	PASS
659_bTo_pair	TSHZ1	18	75210755	75289950	FALSE	1112	-0.326031427943483	43	74631210	75288588	0.192136715055622	3	NA	0.192136715055622	3	NA	657378	NA	3	14	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TSHZ2	20	52972407	53495330	FALSE	1218	-0.459978768286429	34	50587211	53185754	NA	2	NA	NA	2	NA	2598543	NA	12	14	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	TSHZ3	19	31274945	31349547	FALSE	1165	-0.570153591761829	23	29923697	33225768	0.186356639256811	1	0	0.186356639256811	1	0	3302071	1	18	14	1	FALSE	HETLOSS	PASS
659_bTo_pair	TSKS	19	49739753	49763330	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	TSKU	11	76782251	76798154	FALSE	710	-0.314972965919996	43	76659622	77285059	0.192136715055622	3	NA	0.192136715055622	3	NA	625437	NA	8	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TSLP	5	111070062	111078024	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	TSN	2	121737103	121767853	FALSE	141	-0.504529837214656	30	113438038	127203515	1	2	1	1	2	1	13765477	1	34	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	TSNARE1	8	142212080	142403240	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	TSNAX	1	231528653	231566524	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	TSNAX-DISC1	1	231528653	231819244	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	21	2	FALSE	HETLOSS	PASS
659_bTo_pair	TSNAXIP1	16	67806765	67832148	FALSE	979	-0.429457644119204	34	67645299	68698317	NA	2	NA	NA	2	NA	1053018	NA	33	27	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TSPAN1	1	46175073	46185958	FALSE	16	-0.485631979032023	30	46175602	48453048	1	2	1	1	2	1	2277446	1	32	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	TSPAN10	17	81637171	81648749	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	TSPAN11	12	30926428	30996599	FALSE	759	-0.427669886187443	30	25503824	31088026	1	2	1	1	2	1	5584202	1	28	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	TSPAN12	7	120787320	120858402	FALSE	490	-0.576498321273708	26	116888215	124790543	NA	2	NA	NA	2	NA	7902328	NA	33	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TSPAN13	7	16753535	16784536	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	6	1	FALSE	GAIN	PASS
659_bTo_pair	TSPAN14	10	80454166	80533123	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	8	0	FALSE	CNLOH	PASS
659_bTo_pair	TSPAN15	10	69451473	69507669	FALSE	651	-0.523280686314431	28	68722553	70760843	0.351300687168522	2	0	0.351300687168522	2	0	2038290	2	27	9	0	FALSE	CNLOH	PASS
659_bTo_pair	TSPAN16	19	11296139	11326996	FALSE	1143	-0.599591757528625	23	11089545	11375998	0.186356639256811	1	0	0.186356639256811	1	0	286453	1	11	8	2	FALSE	HETLOSS	PASS
659_bTo_pair	TSPAN17	5	176647387	176659054	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	TSPAN18	11	44726465	44932421	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	TSPAN19	12	85014311	85036277	FALSE	793	-0.510041181295141	29	76355979	85286979	NA	2	NA	NA	2	NA	8931000	NA	22	8	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TSPAN2	1	115048011	115089500	FALSE	37	-0.781726809773331	16	114718157	116404480	0.365165917639896	1	0	0.365165917639896	1	0	1686323	1	12	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	TSPAN3	15	77041404	77083984	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	TSPAN31	12	57738013	57750211	FALSE	784	-0.466944625057294	34	57694895	57747296	NA	2	NA	NA	2	NA	52401	NA	3	15	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	TSPAN32	11	2301997	2318200	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	TSPAN33	7	129144892	129169697	FALSE	492	-0.463656181520944	30	126439208	129166764	1	2	1	1	2	1	2727556	1	27	8	0	TRUE	DIPLOID	PASS
659_bTo_pair	TSPAN4	11	842808	867116	FALSE	677	-0.668610562213339	21	193065	1241853	0.140309795179477	0	0	0.140309795179477	0	0	1048788	0	48	8	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TSPAN5	4	98470367	98658629	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	TSPAN6	23	100627109	100639991	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	8	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	TSPAN7	23	38561370	38688920	FALSE	1286	-0.229369008369366	46	37655739	38687617	0.298322295679939	3	NA	0.298322295679939	3	NA	1031878	NA	12	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TSPAN8	12	71125085	71441898	FALSE	790	-0.377310724638489	39	69586733	71157609	NA	2	NA	NA	2	NA	1570876	NA	11	11	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	TSPAN9	12	3077355	3286564	FALSE	739	-0.369471841682825	39	1104785	3873202	NA	2	NA	NA	2	NA	2768417	NA	20	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TSPEAR	21	44497892	44711580	FALSE	1236	-0.500794339727727	30	44229616	44592452	1	2	1	1	2	1	362836	1	14	70	23	TRUE	DIPLOID	PASS
659_bTo_pair	TSPO	22	43151514	43163242	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	4	0	FALSE	CNLOH	PASS
659_bTo_pair	TSPO2	6	41042554	41044337	FALSE	397	-0.509151429367598	27	37213022	41687167	1	2	1	1	2	1	4474145	1	33	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	TSPOAP1	17	58301228	58328760	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	44	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TSPYL1	6	116276578	116279903	FALSE	417	-0.520434008170675	29	114058103	117272433	NA	2	NA	NA	2	NA	3214330	NA	20	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TSPYL2	23	53082367	53088540	FALSE	1299	0.565829394219729	69	53076723	53176407	0.364342740527346	8	NA	0.364342740527346	8	NA	99684	NA	3	11	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	TSPYL4	6	116249961	116254140	FALSE	417	-0.520434008170675	29	114058103	117272433	NA	2	NA	NA	2	NA	3214330	NA	20	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TSPYL5	8	97273474	97277964	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	5	1	FALSE	GAIN	PASS
659_bTo_pair	TSPYL6	2	54253184	54256272	FALSE	110	-0.435434252584523	30	48441014	54599245	1	2	1	1	2	1	6158231	1	18	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	TSR1	17	2322503	2337507	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	TSR2	23	54440401	54445487	FALSE	1303	0.0232492223836125	56	53426353	57488811	0.365165917639896	4	NA	0.365165917639896	4	NA	4062458	NA	32	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TSR3	16	1349240	1351911	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TSSC4	11	2400488	2403878	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	TSSK1B	5	113432554	113435031	FALSE	331	-0.706980197323045	20	112861366	122075379	0.365165917639896	1	0	0.365165917639896	1	0	9214013	1	31	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	TSSK2	22	19130808	19132623	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	5	0	FALSE	CNLOH	PASS
659_bTo_pair	TSSK3	1	32351521	32364312	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	TSSK4	14	24205697	24208362	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	TSSK6	19	19512418	19515685	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	TST	22	37010859	37020183	FALSE	1263	-0.528184158498335	29	36991204	37967644	NA	2	NA	NA	2	NA	976440	NA	31	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TSTA3	8	143612618	143618048	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	11	2	FALSE	DIPLOID	PASS
659_bTo_pair	TSTD1	1	161037631	161038990	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	TSTD2	9	97600080	97633575	FALSE	608	-0.541405085979946	27	95522076	99069752	1	2	1	1	2	1	3547676	1	31	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	TSTD3	6	99520693	99531918	FALSE	411	-0.455063723695114	34	95586870	106069771	NA	2	NA	NA	2	NA	10482901	NA	27	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TTBK1	6	43243680	43288259	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	25	0	FALSE	DIPLOID	PASS
659_bTo_pair	TTBK2	15	42738734	42920809	FALSE	900	-0.777056562410308	17	42718512	43401817	0.365165917639896	1	0	0.365165917639896	1	0	683305	1	13	22	2	FALSE	HETLOSS	PASS
659_bTo_pair	TTC1	5	160009113	160065543	FALSE	353	-0.698571741790457	22	157138801	161546576	0.291335969972972	1	0	0.291335969972972	1	0	4407775	1	29	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	TTC12	11	113314529	113383544	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	TTC13	1	230906243	230978875	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	24	3	FALSE	HETLOSS	PASS
659_bTo_pair	TTC14	3	180602130	180617828	FALSE	253	-0.302573270656947	43	179243074	180989661	0.192136715055622	3	NA	0.192136715055622	3	NA	1746587	NA	13	19	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TTC16	9	127716066	127731600	FALSE	619	-0.820686000870706	14	125203036	127778681	0.365165917639896	1	0	0.365165917639896	1	0	2575645	1	23	19	4	FALSE	HETLOSS	PASS
659_bTo_pair	TTC17	11	43358932	43494933	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	27	1	FALSE	DIPLOID	PASS
659_bTo_pair	TTC19	17	15999380	16045015	FALSE	1009	-0.493836167698037	33	12666172	16027364	0.344071079426502	2	0	0.344071079426502	2	0	3361192	2	21	29	1	TRUE	CNLOH	PASS
659_bTo_pair	TTC21A	3	39107704	39138903	FALSE	212	-0.750996176556328	19	38165958	40533064	0.365165917639896	1	0	0.365165917639896	1	0	2367106	1	26	31	0	FALSE	HETLOSS	PASS
659_bTo_pair	TTC21B	2	165857475	165953843	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	34	0	FALSE	DIPLOID	PASS
659_bTo_pair	TTC22	1	54779712	54801267	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	11	2	FALSE	DIPLOID	PASS
659_bTo_pair	TTC23	15	99136323	99251223	FALSE	933	-0.918772702357227	12	98968746	101922991	0.365165917639896	1	0	0.365165917639896	1	0	2954245	1	21	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	TTC23L	5	34838833	34899456	FALSE	312	-0.206081392785099	47	24487677	35857105	0.365165917639896	3	1	0.365165917639896	3	1	11369428	2	27	10	0	FALSE	GAIN	PASS
659_bTo_pair	TTC24	1	156579727	156586770	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	TTC25	17	41930635	41965651	FALSE	1036	-0.764029118419186	19	41624551	42193564	0.365165917639896	1	0	0.365165917639896	1	0	569013	1	25	13	1	FALSE	HETLOSS	PASS
659_bTo_pair	TTC26	7	139133744	139191986	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	TTC27	2	32628032	32821051	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	TTC28	22	27978014	28679865	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	44	3	FALSE	CNLOH	PASS
659_bTo_pair	TTC29	4	146706638	146945882	FALSE	300	-0.423460920061428	34	143186078	151174790	NA	2	NA	NA	2	NA	7988712	NA	32	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TTC3	21	37073226	37203112	FALSE	1228	-0.430637379115077	30	36009679	38367602	1	2	1	1	2	1	2357923	1	17	54	9	FALSE	DIPLOID	PASS
659_bTo_pair	TTC30A	2	177612992	177618966	FALSE	155	-0.524315670340053	27	177420364	181062892	1	2	1	1	2	1	3642528	1	16	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	TTC30B	2	177548998	177553014	FALSE	155	-0.524315670340053	27	177420364	181062892	1	2	1	1	2	1	3642528	1	16	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	TTC31	2	74483073	74494886	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TTC32	2	19896643	19901986	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TTC33	5	40512333	40755975	FALSE	316	-0.143574193475256	49	39021030	43704252	0.365165917639896	3	1	0.365165917639896	3	1	4683222	2	28	12	0	FALSE	GAIN	PASS
659_bTo_pair	TTC34	1	2635976	2801717	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	TTC36	11	118527472	118531197	FALSE	728	-0.487905654975058	30	118527582	119195409	1	2	1	1	2	1	667827	1	26	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	TTC37	5	95461755	95555007	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	39	0	FALSE	HETLOSS	PASS
659_bTo_pair	TTC38	22	46267961	46294008	FALSE	1271	-0.350898193716427	41	45922979	50285791	0.284729887459054	3	0	0.284729887459054	3	0	4362812	3	30	14	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	TTC39A	1	51287258	51345116	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	TTC39B	9	15163622	15307360	FALSE	581	-0.746183084602222	19	10618009	19786745	0.365165917639896	1	0	0.365165917639896	1	0	9168736	1	24	21	1	FALSE	HETLOSS	PASS
659_bTo_pair	TTC39C	18	23992773	24135610	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	17	2	FALSE	GAIN	PASS
659_bTo_pair	TTC4	1	54715822	54742657	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	10	3	FALSE	DIPLOID	PASS
659_bTo_pair	TTC5	14	20256558	20305994	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	TTC6	14	37595847	38041442	FALSE	857	1.78895175673229	98	37546976	37622795	0.364342740527346	23	NA	0.364342740527346	23	NA	75819	NA	3	44	3	TRUE	AMP	PASS
659_bTo_pair	TTC7A	2	46916157	47076137	FALSE	108	-0.751130758275331	19	46479657	47176488	0.365165917639896	1	0	0.365165917639896	1	0	696831	1	11	23	1	FALSE	HETLOSS	PASS
659_bTo_pair	TTC7B	14	90524564	90816479	FALSE	870	-0.471399657488227	30	81180359	92000019	1	2	1	1	2	1	10819660	1	29	23	1	FALSE	DIPLOID	PASS
659_bTo_pair	TTC8	14	88824153	88881078	FALSE	870	-0.471399657488227	30	81180359	92000019	1	2	1	1	2	1	10819660	1	29	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	TTC9	14	70641787	70675360	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	4	2	FALSE	DIPLOID	PASS
659_bTo_pair	TTC9B	19	40216058	40218399	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TTC9C	11	62728069	62740293	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TTF1	9	132375548	132406851	FALSE	625	-0.794391185935477	14	131261330	132889947	0.365165917639896	1	0	0.365165917639896	1	0	1628617	1	17	17	2	FALSE	HETLOSS	PASS
659_bTo_pair	TTF2	1	117060303	117107453	FALSE	39	-0.830052301686955	16	116577512	117118673	0.365165917639896	1	0	0.365165917639896	1	0	541161	1	6	26	4	FALSE	HETLOSS	PASS
659_bTo_pair	TTI1	20	37983007	38033468	FALSE	1205	-0.619744376635615	23	37518926	41023791	0.186356639256811	1	0	0.186356639256811	1	0	3504865	1	19	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	TTI2	8	33473386	33513601	FALSE	528	-1.13877676700397	7	33372685	36932925	0.365165917639896	0	0	0.365165917639896	0	0	3560240	0	7	18	2	FALSE	HOMDEL	PASS
659_bTo_pair	TTK	6	80003887	80042527	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	21	2	FALSE	DIPLOID	PASS
659_bTo_pair	TTL	2	112482154	112541739	FALSE	138	-0.423459519967032	34	112060069	113201423	NA	2	NA	NA	2	NA	1141354	NA	21	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TTLL1	22	43039644	43089428	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	10	1	FALSE	CNLOH	PASS
659_bTo_pair	TTLL10	1	1173884	1197935	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	15	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TTLL11	9	121821928	122093606	FALSE	616	0.852648362280161	76	121678729	121822635	0.364342740527346	10	NA	0.364342740527346	10	NA	143906	NA	2	15	1	TRUE	AMP	PASS
659_bTo_pair	TTLL12	22	43166622	43187133	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	15	0	FALSE	CNLOH	PASS
659_bTo_pair	TTLL2	6	167325071	167359503	FALSE	448	-0.0954555878575429	53	167040062	167373262	0.273255132087987	4	NA	0.273255132087987	4	NA	333200	NA	7	9	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	TTLL3	3	9808086	9855138	FALSE	197	-0.750806391959902	17	319897	10008494	0.365165917639896	1	0	0.365165917639896	1	0	9688597	1	40	27	0	FALSE	HETLOSS	PASS
659_bTo_pair	TTLL4	2	218710845	218755416	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	23	0	FALSE	HETLOSS	PASS
659_bTo_pair	TTLL5	14	75633625	75955078	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	44	3	FALSE	DIPLOID	PASS
659_bTo_pair	TTLL6	17	48762235	48817214	FALSE	1050	0.118579818885908	59	48530521	48770002	0.308533751035793	5	NA	0.308533751035793	5	NA	239481	NA	13	19	1	TRUE	AMP (many states)	PASS
659_bTo_pair	TTLL7	1	83865028	83999150	FALSE	27	-0.365760579101575	39	77969065	85252731	NA	2	NA	NA	2	NA	7283666	NA	23	21	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TTLL8	22	50015123	50056935	FALSE	1271	-0.350898193716427	41	45922979	50285791	0.284729887459054	3	0	0.284729887459054	3	0	4362812	3	30	17	2	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	TTLL9	20	31870702	31944963	FALSE	1201	-0.583226555890856	26	31757461	32331296	NA	2	NA	NA	2	NA	573835	NA	13	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TTN	2	178525989	178830802	FALSE	155	-0.524315670340053	27	177420364	181062892	1	2	1	1	2	1	3642528	1	16	624	39	FALSE	DIPLOID	PASS
659_bTo_pair	TTPA	8	63048553	63086053	FALSE	550	-0.186881774239562	48	60208949	67746087	0.365165917639896	3	NA	0.365165917639896	3	NA	7537138	NA	33	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TTPAL	20	44475886	44494603	FALSE	1210	-0.476296426145969	34	43513997	45110019	NA	2	NA	NA	2	NA	1596022	NA	26	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TTR	18	31557010	31599021	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	4	0	FALSE	GAIN	PASS
659_bTo_pair	TTYH1	19	54415219	54436900	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	16	2	FALSE	DIPLOID	PASS
659_bTo_pair	TTYH2	17	74213514	74262020	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	17	1	FALSE	DIPLOID	PASS
659_bTo_pair	TTYH3	7	2631951	2664802	FALSE	451	-0.380727397700309	39	2432806	2844144	NA	2	NA	NA	2	NA	411338	NA	8	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TUB	11	8019244	8106112	FALSE	683	-0.403180715137318	35	6615199	8138345	1	2	1	1	2	1	1523146	1	28	16	2	FALSE	DIPLOID	PASS
659_bTo_pair	TUBA1A	12	49184796	49189324	FALSE	770	-0.500134310902258	34	49065087	50081631	NA	2	NA	NA	2	NA	1016544	NA	25	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TUBA1B	12	49127782	49131397	FALSE	770	-0.500134310902258	34	49065087	50081631	NA	2	NA	NA	2	NA	1016544	NA	25	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TUBA1C	12	49188736	49274603	FALSE	770	-0.500134310902258	34	49065087	50081631	NA	2	NA	NA	2	NA	1016544	NA	25	9	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TUBA3C	13	19173770	19181852	FALSE	819	-0.883807164728579	13	19173884	20902691	0.365165917639896	1	0	0.365165917639896	1	0	1728807	1	14	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	TUBA3D	2	131476093	131482934	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	TUBA3E	2	130191743	130198461	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	9	5	FALSE	DIPLOID	PASS
659_bTo_pair	TUBA4A	2	219249711	219278170	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	TUBA4B	2	219253243	219272188	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	TUBA8	22	18110331	18146554	FALSE	1240	-0.594689860601271	26	15528179	18606839	NA	2	NA	NA	2	NA	3078660	NA	21	8	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TUBAL3	10	5393098	5404830	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	8	0	FALSE	CNLOH	PASS
659_bTo_pair	TUBB	6	30720201	30725426	FALSE	379	-0.524744136561063	27	30546321	31270541	1	2	1	1	2	1	724220	1	30	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	TUBB1	20	59019254	59026654	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	TUBB2A	6	3153669	3157526	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	TUBB2B	6	3224261	3231730	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	TUBB3	16	89921392	89938761	FALSE	994	1.62131520719508	93	89920012	89936098	0.364342740527346	20	NA	0.364342740527346	20	NA	16086	NA	3	13	2	FALSE	AMP	PASS
659_bTo_pair	TUBB4A	19	6494319	6502848	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	TUBB4B	9	137241213	137243707	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	TUBB6	18	12307669	12344320	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	15	0	FALSE	GAIN	PASS
659_bTo_pair	TUBB8	10	46892	74163	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	8	3	FALSE	CNLOH	PASS
659_bTo_pair	TUBB8P12	18	47390	49557	FALSE	1086	-0.476374446097734	34	47412	500536	NA	2	NA	NA	2	NA	453124	NA	4	8	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TUBD1	17	59859482	59892945	FALSE	1058	-0.423419268198233	34	58422367	59890994	NA	2	NA	NA	2	NA	1468627	NA	20	8	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TUBE1	6	112070777	112087529	FALSE	414	0.538907519348198	68	111660319	112071999	0.364342740527346	7	NA	0.364342740527346	7	NA	411680	NA	3	12	0	TRUE	INDETERMINATE	PASS
659_bTo_pair	TUBG1	17	42609676	42615234	FALSE	1038	-0.623371137159426	26	42404937	42698887	NA	2	NA	NA	2	NA	293950	NA	13	11	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TUBG2	17	42659305	42667006	FALSE	1038	-0.623371137159426	26	42404937	42698887	NA	2	NA	NA	2	NA	293950	NA	13	12	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TUBGCP2	10	133278630	133312337	FALSE	676	-0.612597388333807	25	132187132	133626712	0.365165917639896	1	0	0.365165917639896	1	0	1439580	1	27	24	1	FALSE	HETLOSS	PASS
659_bTo_pair	TUBGCP3	13	112485005	112588205	FALSE	844	-0.576217954819194	24	110150427	113263496	0.359751661895656	2	0	0.359751661895656	2	0	3113069	2	19	24	0	FALSE	CNLOH	PASS
659_bTo_pair	TUBGCP4	15	43369221	43409771	FALSE	900	-0.777056562410308	17	42718512	43401817	0.365165917639896	1	0	0.365165917639896	1	0	683305	1	13	37	5	TRUE	HETLOSS	PASS
659_bTo_pair	TUBGCP5	15	22983192	23039673	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	25	1	FALSE	HETLOSS	PASS
659_bTo_pair	TUBGCP6	22	50217689	50244992	FALSE	1271	-0.350898193716427	41	45922979	50285791	0.284729887459054	3	0	0.284729887459054	3	0	4362812	3	30	33	3	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	TUFM	16	28842411	28846408	FALSE	962	-0.522336070959039	29	27403203	28925074	NA	2	NA	NA	2	NA	1521871	NA	25	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TUFT1	1	151540305	151583583	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	TULP1	6	35497874	35512938	FALSE	393	-0.47521086997284	30	35476361	36677919	1	2	1	1	2	1	1201558	1	21	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	TULP2	19	48880965	48898733	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	TULP3	12	2877223	2941140	FALSE	739	-0.369471841682825	39	1104785	3873202	NA	2	NA	NA	2	NA	2768417	NA	20	15	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TULP4	6	158232236	158511828	FALSE	442	-0.485239870020868	34	157293045	158767513	NA	2	NA	NA	2	NA	1474468	NA	11	24	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TUSC1	9	25676389	25678440	FALSE	585	-0.464842894155678	32	22447079	32572950	0.365165917639896	2	0	0.365165917639896	2	0	10125871	2	19	3	1	FALSE	CNLOH	PASS
659_bTo_pair	TUSC2	3	50320027	50328251	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	TUSC3	8	15417215	15766649	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	TUT1	11	62575045	62592177	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	15	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TUT4	1	52408282	52553487	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	43	1	FALSE	DIPLOID	PASS
659_bTo_pair	TUT7	9	86287733	86354454	FALSE	604	-0.547885090101936	27	85547201	90613824	1	2	1	1	2	1	5066623	1	21	33	4	FALSE	DIPLOID	PASS
659_bTo_pair	TVP23A	16	10760919	10818794	FALSE	950	-0.703992637019778	22	10431373	10818487	0.291335969972972	1	0	0.291335969972972	1	0	387114	1	5	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	TVP23B	17	18780995	18806714	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	8	1	FALSE	CNLOH	PASS
659_bTo_pair	TVP23C	17	15502264	15563595	FALSE	1009	-0.493836167698037	33	12666172	16027364	0.344071079426502	2	0	0.344071079426502	2	0	3361192	2	21	8	2	FALSE	CNLOH	PASS
659_bTo_pair	TVP23C-CDRT4	17	15436021	15563561	FALSE	1009	-0.493836167698037	33	12666172	16027364	0.344071079426502	2	0	0.344071079426502	2	0	3361192	2	21	11	2	FALSE	CNLOH	PASS
659_bTo_pair	TWF1	12	43793723	43806375	FALSE	764	-0.478463991093384	34	40959192	45805435	NA	2	NA	NA	2	NA	4846243	NA	16	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TWF2	3	52228610	52239260	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	TWIST1	7	19020991	19117672	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	3	0	FALSE	GAIN	PASS
659_bTo_pair	TWIST2	2	238848032	238910543	FALSE	190	-0.691419458816616	21	236392006	238848635	0.140309795179477	0	0	0.140309795179477	0	0	2456629	0	22	2	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TWISTNB	7	19695462	19709087	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	6	0	FALSE	GAIN	PASS
659_bTo_pair	TWNK	10	100987367	100994401	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	12	1	FALSE	CNLOH	PASS
659_bTo_pair	TWSG1	18	9334767	9402420	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	5	0	FALSE	GAIN	PASS
659_bTo_pair	TXK	4	48066393	48134256	FALSE	282	-0.204234033978701	47	41752697	49032685	0.365165917639896	3	1	0.365165917639896	3	1	7279988	2	31	15	1	FALSE	GAIN	PASS
659_bTo_pair	TXLNA	1	32179686	32198285	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	TXLNB	6	139240061	139292139	FALSE	429	-0.412609995390511	39	138092232	142443520	NA	2	NA	NA	2	NA	4351288	NA	18	13	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TXLNG	23	16786427	16844519	FALSE	1276	0.0763243231691416	59	15827382	20064777	0.308533751035793	5	NA	0.308533751035793	5	NA	4237395	NA	24	12	1	FALSE	AMP (many states)	PASS
659_bTo_pair	TXN	9	110243811	110256640	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	TXN2	22	36467036	36482030	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	4	0	FALSE	CNLOH	PASS
659_bTo_pair	TXNDC11	16	11679080	11742878	FALSE	954	-0.618769947650953	26	11345676	11941160	NA	2	NA	NA	2	NA	595484	NA	9	20	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TXNDC12	1	52020131	52056171	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	TXNDC15	5	134873803	134901525	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	TXNDC16	14	52430590	52552522	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	20	1	FALSE	DIPLOID	PASS
659_bTo_pair	TXNDC17	17	6640758	6644541	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	TXNDC2	18	9885726	9889275	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	8	2	FALSE	GAIN	PASS
659_bTo_pair	TXNDC5	6	7881517	7910814	FALSE	368	-0.422762158651132	30	3119499	13977102	1	2	1	1	2	1	10857603	1	58	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	TXNDC8	9	110303521	110337884	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	TXNDC9	2	99318982	99340702	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	TXNIP	1	145992435	145996600	FALSE	44	-0.0508975396039555	55	119911615	146019534	0.328696605851359	4	NA	0.328696605851359	4	NA	26107919	NA	33	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TXNL1	18	56597208	56651600	FALSE	1105	-0.785555027616249	16	52752095	58670682	0.365165917639896	1	0	0.365165917639896	1	0	5918587	1	19	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	TXNL4A	18	79970811	80033949	FALSE	1113	-0.883471952658051	12	75410842	80247341	0.365165917639896	1	0	0.365165917639896	1	0	4836499	1	17	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	TXNL4B	16	72044289	72094431	FALSE	983	-0.428709389755029	30	71178941	72171154	1	2	1	1	2	1	992213	1	22	19	3	FALSE	DIPLOID	PASS
659_bTo_pair	TXNRD1	12	104215779	104350305	FALSE	798	-0.492720037723834	34	102839233	105367537	NA	2	NA	NA	2	NA	2528304	NA	20	23	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TXNRD2	22	19875517	19941992	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	20	2	FALSE	CNLOH	PASS
659_bTo_pair	TXNRD3	3	126571779	126655155	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	20	0	FALSE	GAIN	PASS
659_bTo_pair	TYK2	19	10350529	10380676	FALSE	1139	-0.718742930681428	18	10252235	10467338	0.180216333675297	0	0	0.180216333675297	0	0	215103	0	13	25	4	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	TYMP	22	50525752	50530056	FALSE	1272	-0.260847831900416	46	50286270	50731222	0.298322295679939	3	NA	0.298322295679939	3	NA	444952	NA	19	10	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	TYMS	18	657604	673578	FALSE	1087	-0.181907359287398	48	580498	712613	0.365165917639896	3	NA	0.365165917639896	3	NA	132115	NA	4	9	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	TYR	11	89177452	89295759	FALSE	714	-0.230278951577934	46	86306357	90211282	0.298322295679939	3	NA	0.298322295679939	3	NA	3904925	NA	21	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	TYRO3	15	41557675	41583586	FALSE	894	-0.874433234740196	13	41183964	41662415	0.365165917639896	1	0	0.365165917639896	1	0	478451	1	12	22	2	FALSE	HETLOSS	PASS
659_bTo_pair	TYROBP	19	35904401	35908295	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	TYRP1	9	12685439	12710290	FALSE	581	-0.746183084602222	19	10618009	19786745	0.365165917639896	1	0	0.365165917639896	1	0	9168736	1	24	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	TYSND1	10	70137981	70146676	FALSE	651	-0.523280686314431	28	68722553	70760843	0.351300687168522	2	0	0.351300687168522	2	0	2038290	2	27	9	0	FALSE	CNLOH	PASS
659_bTo_pair	TYW1	7	66995173	67239519	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	TYW1B	7	72558744	72828198	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	15	4	FALSE	DIPLOID	PASS
659_bTo_pair	TYW3	1	74733152	74766678	FALSE	25	-0.394411030612058	39	74026891	77942032	NA	2	NA	NA	2	NA	3915141	NA	22	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	TYW5	2	199929975	199955736	FALSE	164	-0.381871160033202	39	198084145	201228955	NA	2	NA	NA	2	NA	3144810	NA	19	9	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	U2AF1	21	43092956	43107587	FALSE	1234	-0.544212636077936	27	41740855	44141314	1	2	1	1	2	1	2400459	1	31	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	U2AF1L4	19	35742464	35745445	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	U2AF2	19	55654146	55674715	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	13	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	U2SURP	3	142964497	143060546	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	28	1	FALSE	GAIN	PASS
659_bTo_pair	U52112.1	23	153872221	153909223	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	12	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	UACA	15	70654554	70763593	FALSE	912	-0.791171176808306	16	67202882	73633224	0.365165917639896	1	0	0.365165917639896	1	0	6430342	1	46	30	0	FALSE	HETLOSS	PASS
659_bTo_pair	UAP1	1	162561506	162599842	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	UAP1L1	9	137077501	137084539	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	UBA1	23	47190861	47215128	FALSE	1293	1.94530163953965	102	47145283	47191894	0.364342740527346	26	NA	0.364342740527346	26	NA	46611	NA	3	26	0	TRUE	AMP	PASS
659_bTo_pair	UBA2	19	34428352	34471251	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	UBA3	3	69054730	69080408	FALSE	228	-0.860828429618822	13	64010871	69385924	0.365165917639896	1	0	0.365165917639896	1	0	5375053	1	16	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	UBA5	3	132654446	132678097	FALSE	242	-0.32037413513609	40	130560427	134790274	0.308149309490068	3	1	0.308149309490068	3	1	4229847	2	29	15	0	FALSE	GAIN	PASS
659_bTo_pair	UBA52	19	18571730	18577550	FALSE	1159	-0.165917001507678	49	18177228	19138502	0.365165917639896	3	1	0.365165917639896	3	1	961274	2	36	4	1	FALSE	GAIN	PASS
659_bTo_pair	UBA6	4	67612652	67701179	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	33	3	FALSE	DIPLOID	PASS
659_bTo_pair	UBA7	3	49805207	49813946	FALSE	220	-0.761977046834943	19	49697158	49862323	0.365165917639896	1	0	0.365165917639896	1	0	165165	1	9	23	1	FALSE	HETLOSS	PASS
659_bTo_pair	UBAC1	9	135932969	135961380	FALSE	629	-0.955558414525678	9	134750808	136485014	0.291955377254426	0	0	0.291955377254426	0	0	1734206	0	30	10	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	UBAC2	13	99200774	99386434	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	19	0	FALSE	CNLOH	PASS
659_bTo_pair	UBALD1	16	4608883	4615027	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	UBALD2	17	76265202	76271299	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	UBAP1	9	34179005	34252523	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	11	1	FALSE	CNLOH	PASS
659_bTo_pair	UBAP1L	15	65092770	65115197	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	UBAP2	9	33921693	34048949	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	29	1	FALSE	CNLOH	PASS
659_bTo_pair	UBAP2L	1	154220179	154271510	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	31	0	FALSE	DIPLOID	PASS
659_bTo_pair	UBASH3A	21	42403447	42447681	FALSE	1234	-0.544212636077936	27	41740855	44141314	1	2	1	1	2	1	2400459	1	31	16	3	FALSE	DIPLOID	PASS
659_bTo_pair	UBASH3B	11	122655675	122814473	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	UBB	17	16380798	16382745	FALSE	1012	-0.646922995033775	26	16234077	17184849	NA	2	NA	NA	2	NA	950772	NA	11	3	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	UBC	12	124911604	124917368	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	UBD	6	29555515	29559925	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	UBE2A	23	119574467	119591083	FALSE	1327	1.0307148866152	81	119453040	119592470	0.364342740527346	12	NA	0.364342740527346	12	NA	139430	NA	5	17	0	FALSE	AMP	PASS
659_bTo_pair	UBE2B	5	134371179	134391992	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	UBE2C	20	45812576	45816957	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	UBE2D1	10	58334975	58370753	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	7	0	FALSE	CNLOH	PASS
659_bTo_pair	UBE2D2	5	139526431	139628433	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	UBE2D3	4	102794383	102868896	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	UBE2D4	7	43926438	43956136	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	6	1	FALSE	GAIN	PASS
659_bTo_pair	UBE2E1	3	23805903	23891316	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	UBE2E2	3	23203020	23591793	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	UBE2E3	2	180967248	181076585	FALSE	155	-0.524315670340053	27	177420364	181062892	1	2	1	1	2	1	3642528	1	16	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	UBE2F	2	237966827	238042782	FALSE	190	-0.691419458816616	21	236392006	238848635	0.140309795179477	0	0	0.140309795179477	0	0	2456629	0	22	10	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	UBE2F-SCLY	2	237967014	238099412	FALSE	190	-0.691419458816616	21	236392006	238848635	0.140309795179477	0	0	0.140309795179477	0	0	2456629	0	22	22	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	UBE2G1	17	4269259	4366628	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	UBE2G2	21	44768580	44802019	FALSE	1237	-0.454133559576209	34	44600832	44873643	NA	2	NA	NA	2	NA	272811	NA	15	6	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	UBE2H	7	129830732	129952949	FALSE	494	-0.536776174448359	29	129225418	130685270	NA	2	NA	NA	2	NA	1459852	NA	17	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	UBE2I	16	1308880	1327018	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	UBE2J1	6	89326625	89352848	FALSE	409	-0.443147941484883	34	89098919	90586786	NA	2	NA	NA	2	NA	1487867	NA	13	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	UBE2J2	1	1253909	1273885	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	UBE2K	4	39698044	39782792	FALSE	280	-0.191477557443324	47	38829296	41740154	0.365165917639896	3	1	0.365165917639896	3	1	2910858	2	22	7	0	FALSE	GAIN	PASS
659_bTo_pair	UBE2L3	22	21549447	21624034	FALSE	1246	-0.481954888210425	34	21001894	21693896	NA	2	NA	NA	2	NA	692002	NA	14	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	UBE2L5	13	30422488	30428616	FALSE	828	-0.893717680890687	13	28659152	32311865	0.365165917639896	1	0	0.365165917639896	1	0	3652713	1	17	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	UBE2L6	11	57551656	57568284	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	4	0	FALSE	GAIN	PASS
659_bTo_pair	UBE2M	19	58555712	58558960	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	6	1	FALSE	GAIN	PASS
659_bTo_pair	UBE2N	12	93405673	93442262	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	UBE2O	17	76389451	76453206	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	25	1	FALSE	DIPLOID	PASS
659_bTo_pair	UBE2Q1	1	154548577	154559028	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	UBE2Q2	15	75843285	75901078	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	14	2	FALSE	HETLOSS	PASS
659_bTo_pair	UBE2Q2L	15	84172490	84182234	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	3	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	UBE2QL1	5	6448623	6494909	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	3	0	FALSE	GAIN	PASS
659_bTo_pair	UBE2R2	9	33817567	33920404	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	5	0	FALSE	CNLOH	PASS
659_bTo_pair	UBE2S	19	55399745	55407777	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	5	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	UBE2T	1	202331657	202341980	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	UBE2U	1	64203627	64267368	FALSE	21	-0.414935064922519	39	59321678	64830856	NA	2	NA	NA	2	NA	5509178	NA	22	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	UBE2V1	20	50081124	50115959	FALSE	1216	-0.465272765977354	30	47658376	50278257	1	2	1	1	2	1	2619881	1	18	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	UBE2V2	8	48008400	48064708	FALSE	543	-0.403572692824667	39	47962754	54147613	NA	2	NA	NA	2	NA	6184859	NA	18	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	UBE2W	8	73780097	73878910	FALSE	553	-0.248188717260806	46	68331252	73878866	0.298322295679939	3	NA	0.298322295679939	3	NA	5547614	NA	20	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	UBE2Z	17	48908369	48929056	FALSE	1051	-0.636429062465303	26	48785033	49576193	NA	2	NA	NA	2	NA	791160	NA	15	8	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	UBE3A	15	25333728	25439056	FALSE	886	-0.72357690222919	17	20536449	32718535	0.365165917639896	1	0	0.365165917639896	1	0	12182086	1	60	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	UBE3B	12	109477402	109536705	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	28	1	FALSE	DIPLOID	PASS
659_bTo_pair	UBE3C	7	157138913	157269372	FALSE	509	-0.56054035608462	23	152759958	159144708	0.186356639256811	1	0	0.186356639256811	1	0	6384750	1	20	23	1	FALSE	HETLOSS	PASS
659_bTo_pair	UBE3D	6	82892398	83065841	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	UBE4A	11	118359585	118399211	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	UBE4B	1	10032832	10181239	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	29	0	FALSE	DIPLOID	PASS
659_bTo_pair	UBFD1	16	23557362	23574389	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	UBIAD1	1	11273206	11296049	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	UBL3	13	29764371	29850684	FALSE	828	-0.893717680890687	13	28659152	32311865	0.365165917639896	1	0	0.365165917639896	1	0	3652713	1	17	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	UBL4A	23	154483717	154486670	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	4	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	UBL4B	1	110112468	110113945	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	UBL5	19	9827892	9830115	FALSE	1136	-0.657304673205362	21	8981156	10119920	0.140309795179477	0	0	0.140309795179477	0	0	1138764	0	32	4	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	UBL7	15	74445977	74461182	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	UBLCP1	5	159263081	159286040	FALSE	353	-0.698571741790457	22	157138801	161546576	0.291335969972972	1	0	0.291335969972972	1	0	4407775	1	29	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	UBN1	16	4846665	4882360	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	23	2	FALSE	DIPLOID	PASS
659_bTo_pair	UBN2	7	139230356	139308236	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	26	1	FALSE	DIPLOID	PASS
659_bTo_pair	UBOX5	20	3107573	3160196	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	UBP1	3	33388336	33441371	FALSE	209	-0.637968449787088	26	31990360	37328493	NA	2	NA	NA	2	NA	5338133	NA	26	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	UBQLN1	9	83659963	83708203	FALSE	598	-0.546497547865564	29	78236395	83956411	NA	2	NA	NA	2	NA	5720016	NA	14	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	UBQLN2	23	56563639	56567868	FALSE	1303	0.0232492223836125	56	53426353	57488811	0.365165917639896	4	NA	0.365165917639896	4	NA	4062458	NA	32	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	UBQLN3	11	5507300	5509985	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	UBQLN4	1	156035301	156053794	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	UBQLNL	11	5514393	5516705	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	UBR1	15	42942897	43106113	FALSE	900	-0.777056562410308	17	42718512	43401817	0.365165917639896	1	0	0.365165917639896	1	0	683305	1	13	49	0	FALSE	HETLOSS	PASS
659_bTo_pair	UBR2	6	42564062	42693504	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	49	1	FALSE	DIPLOID	PASS
659_bTo_pair	UBR3	2	169827458	170084131	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	42	4	FALSE	DIPLOID	PASS
659_bTo_pair	UBR4	1	19074506	19210276	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	113	7	FALSE	DIPLOID	PASS
659_bTo_pair	UBR5	8	102253012	102412841	FALSE	560	1.49944678487883	90	102252423	102652198	0.364342740527346	18	NA	0.364342740527346	18	NA	399775	NA	3	69	1	FALSE	AMP	PASS
659_bTo_pair	UBR7	14	93207056	93229215	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	UBTD1	10	97498868	97571209	FALSE	664	-0.371799025630062	36	96955124	97864220	0.365165917639896	2	0	0.365165917639896	2	0	909096	2	23	4	0	FALSE	CNLOH	PASS
659_bTo_pair	UBTD2	5	172209640	172284071	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	UBTF	17	44205033	44221626	FALSE	1044	-0.564508646504934	26	43641966	45261979	NA	2	NA	NA	2	NA	1620013	NA	47	19	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	UBTFL1	11	90085950	90087131	FALSE	714	-0.230278951577934	46	86306357	90211282	0.298322295679939	3	NA	0.298322295679939	3	NA	3904925	NA	21	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	UBXN1	11	62676498	62679117	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	UBXN10	1	20186085	20196048	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	UBXN11	1	26281328	26318363	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	16	3	FALSE	DIPLOID	PASS
659_bTo_pair	UBXN2A	2	23927285	24004909	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	UBXN2B	8	58411264	58451501	FALSE	548	-0.313898052002086	43	56168306	58659618	0.192136715055622	3	NA	0.192136715055622	3	NA	2491312	NA	10	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	UBXN4	2	135741619	135785055	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	UBXN6	19	4444999	4457822	FALSE	1124	-0.62008955817668	23	4168484	5151543	0.186356639256811	1	0	0.186356639256811	1	0	983059	1	28	11	2	FALSE	HETLOSS	PASS
659_bTo_pair	UBXN7	3	196347662	196432474	FALSE	271	-0.194588974812627	47	196198492	198169864	0.365165917639896	3	1	0.365165917639896	3	1	1971372	2	29	12	0	FALSE	GAIN	PASS
659_bTo_pair	UBXN8	8	30732247	30767006	FALSE	524	-0.752404429217175	19	29337070	31032666	0.365165917639896	1	0	0.365165917639896	1	0	1695596	1	13	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	UCHL1	4	41256413	41268455	FALSE	280	-0.191477557443324	47	38829296	41740154	0.365165917639896	3	1	0.365165917639896	3	1	2910858	2	22	8	0	FALSE	GAIN	PASS
659_bTo_pair	UCHL3	13	75549480	75606020	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	8	0	FALSE	CNLOH	PASS
659_bTo_pair	UCHL5	1	193012250	193060080	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	UCK1	9	131523801	131531268	FALSE	625	-0.794391185935477	14	131261330	132889947	0.365165917639896	1	0	0.365165917639896	1	0	1628617	1	17	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	UCK2	1	165827531	165911618	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	UCKL1	20	63939829	63956415	FALSE	1225	-0.32421417626258	43	63733191	64273510	0.192136715055622	3	NA	0.192136715055622	3	NA	540319	NA	22	16	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	UCMA	10	13221767	13234334	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	5	0	FALSE	CNLOH	PASS
659_bTo_pair	UCN	2	27307400	27308445	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	UCN2	3	48561727	48563773	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	UCN3	10	5365009	5374692	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	3	1	FALSE	CNLOH	PASS
659_bTo_pair	UCP1	4	140559434	140568805	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	UCP2	11	73974667	73983307	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	7	0	FALSE	GAIN	PASS
659_bTo_pair	UCP3	11	74000281	74009435	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	7	0	FALSE	GAIN	PASS
659_bTo_pair	UEVLD	11	18529609	18588747	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	UFC1	1	161152776	161158856	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	UFD1	22	19449910	19479215	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	12	0	FALSE	CNLOH	PASS
659_bTo_pair	UFL1	6	96521595	96555276	FALSE	411	-0.455063723695114	34	95586870	106069771	NA	2	NA	NA	2	NA	10482901	NA	27	20	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	UFM1	13	38349849	38363619	FALSE	830	-0.745621963362667	19	32401848	39788354	0.365165917639896	1	0	0.365165917639896	1	0	7386506	1	30	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	UFSP1	7	100888723	100889718	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	UFSP2	4	185399540	185425985	FALSE	305	-0.853036814117495	12	184629284	186555336	0.365165917639896	1	0	0.365165917639896	1	0	1926052	1	22	14	2	FALSE	HETLOSS	PASS
659_bTo_pair	UGCG	9	111896766	111935369	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	UGDH	4	39498755	39528311	FALSE	280	-0.191477557443324	47	38829296	41740154	0.365165917639896	3	1	0.365165917639896	3	1	2910858	2	22	11	3	FALSE	GAIN	PASS
659_bTo_pair	UGGT1	2	128091200	128195677	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	41	1	FALSE	DIPLOID	PASS
659_bTo_pair	UGGT2	13	95801580	96053482	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	39	0	FALSE	CNLOH	PASS
659_bTo_pair	UGP2	2	63840940	63891562	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	UGT1A1	2	233760248	233773299	FALSE	188	0.285555751591453	63	233617932	233773251	0.364342740527346	6	NA	0.364342740527346	6	NA	155319	NA	9	17	2	FALSE	AMP (many states)	PASS
659_bTo_pair	UGT1A10	2	233636454	233773305	FALSE	188	0.285555751591453	63	233617932	233773251	0.364342740527346	6	NA	0.364342740527346	6	NA	155319	NA	9	48	6	FALSE	AMP (many states)	PASS
659_bTo_pair	UGT1A3	2	233729108	233773299	FALSE	188	0.285555751591453	63	233617932	233773251	0.364342740527346	6	NA	0.364342740527346	6	NA	155319	NA	9	24	2	FALSE	AMP (many states)	PASS
659_bTo_pair	UGT1A4	2	233718778	233773299	FALSE	188	0.285555751591453	63	233617932	233773251	0.364342740527346	6	NA	0.364342740527346	6	NA	155319	NA	9	28	2	FALSE	AMP (many states)	PASS
659_bTo_pair	UGT1A5	2	233712992	233773299	FALSE	188	0.285555751591453	63	233617932	233773251	0.364342740527346	6	NA	0.364342740527346	6	NA	155319	NA	9	32	2	FALSE	AMP (many states)	PASS
659_bTo_pair	UGT1A6	2	233691607	233773300	FALSE	188	0.285555751591453	63	233617932	233773251	0.364342740527346	6	NA	0.364342740527346	6	NA	155319	NA	9	36	5	FALSE	AMP (many states)	PASS
659_bTo_pair	UGT1A7	2	233681938	233773299	FALSE	188	0.285555751591453	63	233617932	233773251	0.364342740527346	6	NA	0.364342740527346	6	NA	155319	NA	9	40	6	FALSE	AMP (many states)	PASS
659_bTo_pair	UGT1A8	2	233617645	233773310	FALSE	188	0.285555751591453	63	233617932	233773251	0.364342740527346	6	NA	0.364342740527346	6	NA	155319	NA	9	52	6	FALSE	AMP (many states)	PASS
659_bTo_pair	UGT1A9	2	233671853	233773300	FALSE	188	0.285555751591453	63	233617932	233773251	0.364342740527346	6	NA	0.364342740527346	6	NA	155319	NA	9	44	6	FALSE	AMP (many states)	PASS
659_bTo_pair	UGT2A1	4	69588417	69653249	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	UGT2A2	4	69589309	69639642	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	UGT2A3	4	68928463	68951791	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	10	3	FALSE	DIPLOID	PASS
659_bTo_pair	UGT2B10	4	68815993	68831196	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	UGT2B11	4	69199951	69214731	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	9	2	FALSE	DIPLOID	PASS
659_bTo_pair	UGT2B15	4	68646630	68670628	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	UGT2B17	4	68537184	68568527	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	UGT2B28	4	69280499	69295050	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	10	2	FALSE	DIPLOID	PASS
659_bTo_pair	UGT2B4	4	69480165	69526014	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	11	2	FALSE	DIPLOID	PASS
659_bTo_pair	UGT2B7	4	69051363	69112987	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	UGT3A1	5	35951010	36001028	FALSE	314	-0.173277106490387	51	35904615	38924434	0.365165917639896	3	NA	0.365165917639896	3	NA	3019819	NA	16	12	3	FALSE	GAIN (many states)	PASS
659_bTo_pair	UGT3A2	5	36035017	36071358	FALSE	314	-0.173277106490387	51	35904615	38924434	0.365165917639896	3	NA	0.365165917639896	3	NA	3019819	NA	16	11	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	UGT8	4	114598455	114678224	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	UHMK1	1	162497251	162529629	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	UHRF1	19	4903080	4962154	FALSE	1124	-0.62008955817668	23	4168484	5151543	0.186356639256811	1	0	0.186356639256811	1	0	983059	1	28	18	3	FALSE	HETLOSS	PASS
659_bTo_pair	UHRF1BP1	6	34792015	34883138	FALSE	391	-0.499783837646083	34	33391964	35241176	NA	2	NA	NA	2	NA	1849212	NA	26	31	5	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	UHRF1BP1L	12	100028455	100142848	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	28	0	FALSE	DIPLOID	PASS
659_bTo_pair	UHRF2	9	6413151	6507054	FALSE	579	-0.757785700087963	19	5656721	7798588	0.365165917639896	1	0	0.365165917639896	1	0	2141867	1	11	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	UIMC1	5	176905005	177022633	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	16	3	FALSE	HETLOSS	PASS
659_bTo_pair	ULBP1	6	149964007	149973710	FALSE	433	-0.531492105252902	29	149727245	150020184	NA	2	NA	NA	2	NA	292939	NA	9	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ULBP2	6	149942000	149949235	FALSE	433	-0.531492105252902	29	149727245	150020184	NA	2	NA	NA	2	NA	292939	NA	9	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ULBP3	6	150063150	150069095	FALSE	434	-0.174052460462599	51	150020934	150398272	0.365165917639896	3	NA	0.365165917639896	3	NA	377338	NA	4	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ULK1	12	131894651	131923167	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	30	0	FALSE	DIPLOID	PASS
659_bTo_pair	ULK2	17	19770829	19867936	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	29	1	FALSE	CNLOH	PASS
659_bTo_pair	ULK3	15	74836116	74843346	FALSE	914	-0.731535298739191	17	73740118	75368552	0.365165917639896	1	0	0.365165917639896	1	0	1628434	1	35	15	2	FALSE	HETLOSS	PASS
659_bTo_pair	ULK4	3	41246599	41962430	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	37	1	FALSE	HETLOSS	PASS
659_bTo_pair	UMAD1	7	7640711	7968020	FALSE	456	-0.240618790532325	45	6028682	12688782	0.279823559258657	3	0	0.279823559258657	3	0	6660100	3	32	4	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	UMOD	16	20333052	20356301	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	UMODL1	21	42062959	42143453	FALSE	1234	-0.544212636077936	27	41740855	44141314	1	2	1	1	2	1	2400459	1	31	31	3	FALSE	DIPLOID	PASS
659_bTo_pair	UMPS	3	124730366	124749273	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	8	0	FALSE	GAIN	PASS
659_bTo_pair	UNC119	17	28546707	28552668	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	UNC119B	12	120710435	120723640	FALSE	810	-0.438737881374958	34	120127967	120903912	NA	2	NA	NA	2	NA	775945	NA	20	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	UNC13A	19	17601328	17688365	FALSE	1155	-0.249305971018279	46	17273895	17821522	0.298322295679939	3	NA	0.298322295679939	3	NA	547627	NA	25	49	3	FALSE	GAIN (many states)	PASS
659_bTo_pair	UNC13B	9	35161992	35405338	FALSE	590	0.518634267342274	67	35107891	35683151	0.364342740527346	7	2	0.364342740527346	7	2	575260	5	11	42	1	FALSE	AMP	PASS
659_bTo_pair	UNC13C	15	53978201	54633414	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	45	3	FALSE	HETLOSS	PASS
659_bTo_pair	UNC13D	17	75827225	75844717	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	30	1	FALSE	DIPLOID	PASS
659_bTo_pair	UNC45A	15	90930180	90954093	FALSE	929	-0.700679172673924	22	90876261	92655591	0.291335969972972	1	0	0.291335969972972	1	0	1779330	1	13	27	3	FALSE	HETLOSS	PASS
659_bTo_pair	UNC45B	17	35147817	35189345	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	21	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	UNC50	2	98608579	98618515	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	6	2	FALSE	DIPLOID	PASS
659_bTo_pair	UNC5A	5	176810477	176880898	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	UNC5B	10	71212570	71302864	FALSE	652	-0.821968360096703	16	70771379	71285405	0.365165917639896	1	0	0.365165917639896	1	0	514026	1	4	19	1	TRUE	HETLOSS	PASS
659_bTo_pair	UNC5C	4	95162504	95549206	FALSE	292	-0.396819701286431	35	87613951	104491855	1	2	1	1	2	1	16877904	1	64	20	2	FALSE	DIPLOID	PASS
659_bTo_pair	UNC5CL	6	41026911	41039217	FALSE	397	-0.509151429367598	27	37213022	41687167	1	2	1	1	2	1	4474145	1	33	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	UNC5D	8	35235457	35796550	FALSE	528	-1.13877676700397	7	33372685	36932925	0.365165917639896	0	0	0.365165917639896	0	0	3560240	0	7	21	0	FALSE	HOMDEL	PASS
659_bTo_pair	UNC79	14	93333219	93707876	FALSE	872	-0.499510766229747	30	92088855	94769922	1	2	1	1	2	1	2681067	1	38	61	0	FALSE	DIPLOID	PASS
659_bTo_pair	UNC80	2	209771993	209999300	FALSE	170	-0.412902611462209	39	208271511	209825900	NA	2	NA	NA	2	NA	1554389	NA	4	68	3	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	UNC93A	6	167271169	167316019	FALSE	448	-0.0954555878575429	53	167040062	167373262	0.273255132087987	4	NA	0.273255132087987	4	NA	333200	NA	7	10	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	UNC93B1	11	67991104	68004982	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	13	2	FALSE	GAIN	PASS
659_bTo_pair	UNCX	7	1232907	1237318	FALSE	450	-0.329551508654045	40	193185	2379492	0.308149309490068	3	1	0.308149309490068	3	1	2186307	2	26	7	0	FALSE	GAIN	PASS
659_bTo_pair	UNG	12	109097574	109110992	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	UNK	17	75784771	75825799	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	18	2	FALSE	DIPLOID	PASS
659_bTo_pair	UNKL	16	1363205	1414751	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	19	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	UPB1	22	24494107	24528390	FALSE	1254	-0.533119768487416	28	23838420	28679634	0.351300687168522	2	0	0.351300687168522	2	0	4841214	2	40	10	0	FALSE	CNLOH	PASS
659_bTo_pair	UPF1	19	18831938	18868236	FALSE	1159	-0.165917001507678	49	18177228	19138502	0.365165917639896	3	1	0.365165917639896	3	1	961274	2	36	24	0	FALSE	GAIN	PASS
659_bTo_pair	UPF2	10	11920022	12043170	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	26	0	FALSE	CNLOH	PASS
659_bTo_pair	UPF3A	13	114281584	114305817	FALSE	847	-0.795377433921418	16	114007524	114326263	0.365165917639896	1	0	0.365165917639896	1	0	318739	1	5	13	2	FALSE	HETLOSS	PASS
659_bTo_pair	UPF3B	23	119805311	119852998	FALSE	1328	0.070674287613007	59	119603543	121049335	0.308533751035793	5	NA	0.308533751035793	5	NA	1445792	NA	34	12	0	FALSE	AMP (many states)	PASS
659_bTo_pair	UPK1A	19	35666516	35678483	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	UPK1B	3	119173517	119205153	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	7	0	FALSE	GAIN	PASS
659_bTo_pair	UPK2	11	118925164	118958559	FALSE	728	-0.487905654975058	30	118527582	119195409	1	2	1	1	2	1	667827	1	26	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	UPK3A	22	45284982	45295874	FALSE	1270	-0.626087433717444	24	42515227	45843695	0.359751661895656	2	0	0.359751661895656	2	0	3328468	2	36	8	4	FALSE	CNLOH	PASS
659_bTo_pair	UPK3B	7	76510428	76516521	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	UPK3BL1	7	102637025	102642791	FALSE	486	-0.514688486462851	27	102285129	106112467	1	2	1	1	2	1	3827338	1	40	2	1	FALSE	DIPLOID	PASS
659_bTo_pair	UPP1	7	48088628	48108733	FALSE	464	-0.323591849229323	42	45157835	48245556	0.189552622934988	3	0	0.189552622934988	3	0	3087721	3	12	7	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	UPP2	2	157876702	158136154	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	UPRT	23	75274085	75304600	FALSE	1317	0.217996879888221	62	71533297	76176924	0.364342740527346	5	NA	0.364342740527346	5	NA	4643627	NA	35	8	0	FALSE	AMP (many states)	PASS
659_bTo_pair	UQCC1	20	35302566	35412141	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	UQCC2	6	33694293	33711727	FALSE	391	-0.499783837646083	34	33391964	35241176	NA	2	NA	NA	2	NA	1849212	NA	26	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	UQCC3	11	62670273	62673687	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	2	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	UQCR10	22	29767369	29770413	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	3	0	FALSE	CNLOH	PASS
659_bTo_pair	UQCR11	19	1597172	1605490	FALSE	1116	-0.668595541323287	22	1229189	1605424	0.291335969972972	1	0	0.291335969972972	1	0	376235	1	21	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	UQCRB	8	96225920	96235634	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	5	1	FALSE	GAIN	PASS
659_bTo_pair	UQCRC1	3	48599002	48610976	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	14	1	FALSE	HETLOSS	PASS
659_bTo_pair	UQCRC2	16	21952660	21983660	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	UQCRFS1	19	29205321	29213541	FALSE	1163	-0.446590628984043	34	23373705	29714877	NA	2	NA	NA	2	NA	6341172	NA	10	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	UQCRH	1	46303631	46316776	FALSE	16	-0.485631979032023	30	46175602	48453048	1	2	1	1	2	1	2277446	1	32	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	UQCRHL	1	15807169	15809348	FALSE	6	-0.41295085321191	39	13779356	15847467	NA	2	NA	NA	2	NA	2068111	NA	18	2	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	UQCRQ	5	132866560	132868031	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	URAD	13	27977714	27988654	FALSE	824	-0.820211361281197	14	23365275	27988570	0.365165917639896	1	0	0.365165917639896	1	0	4623295	1	32	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	URB1	21	32311018	32393026	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	47	7	FALSE	DIPLOID	PASS
659_bTo_pair	URB2	1	229626234	229660199	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	23	5	FALSE	HETLOSS	PASS
659_bTo_pair	URGCP	7	43875894	43926411	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	16	2	FALSE	GAIN	PASS
659_bTo_pair	URGCP-MRPS24	7	43866558	43906589	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	20	2	FALSE	GAIN	PASS
659_bTo_pair	URI1	19	29923644	30016608	FALSE	1165	-0.570153591761829	23	29923697	33225768	0.186356639256811	1	0	0.186356639256811	1	0	3302071	1	18	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	URM1	9	128371319	128392016	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	UROC1	3	126481281	126517773	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	21	1	FALSE	GAIN	PASS
659_bTo_pair	UROD	1	45012147	45015575	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	UROS	10	125784980	125823285	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	11	0	FALSE	CNLOH	PASS
659_bTo_pair	USB1	16	57999546	58021618	FALSE	972	-0.499158643645776	34	57931773	64947842	NA	2	NA	NA	2	NA	7016069	NA	18	9	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	USE1	19	17215346	17219829	FALSE	1154	-0.533888138892061	27	16361883	17271664	1	2	1	1	2	1	909781	1	23	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	USF1	1	161039251	161045977	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	USF2	19	35268978	35279821	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	USF3	3	113648385	113696646	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	29	0	FALSE	GAIN	PASS
659_bTo_pair	USH1C	11	17493895	17544416	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	30	1	FALSE	DIPLOID	PASS
659_bTo_pair	USH1G	17	74916084	74923256	FALSE	1075	-0.547768954176872	27	72127024	75740844	1	2	1	1	2	1	3613820	1	57	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	USH2A	1	215622894	216423396	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	98	5	FALSE	DIPLOID	PASS
659_bTo_pair	USHBP1	19	17249176	17282786	FALSE	1154	-0.533888138892061	27	16361883	17271664	1	2	1	1	2	1	909781	1	23	27	0	TRUE	DIPLOID	PASS
659_bTo_pair	USO1	4	75724593	75814286	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	24	0	FALSE	DIPLOID	PASS
659_bTo_pair	USP1	1	62436297	62451804	FALSE	21	-0.414935064922519	39	59321678	64830856	NA	2	NA	NA	2	NA	5509178	NA	22	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	USP10	16	84699978	84779922	FALSE	987	-0.578642888038652	23	81999201	85806436	0.186356639256811	1	0	0.186356639256811	1	0	3807235	1	31	19	1	FALSE	HETLOSS	PASS
659_bTo_pair	USP11	23	47232690	47248328	FALSE	1294	0.117878311449899	59	47198859	47467488	0.308533751035793	5	NA	0.308533751035793	5	NA	268629	NA	5	23	0	FALSE	AMP (many states)	PASS
659_bTo_pair	USP12	13	27066142	27171896	FALSE	824	-0.820211361281197	14	23365275	27988570	0.365165917639896	1	0	0.365165917639896	1	0	4623295	1	32	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	USP13	3	179652755	179789401	FALSE	253	-0.302573270656947	43	179243074	180989661	0.192136715055622	3	NA	0.192136715055622	3	NA	1746587	NA	13	21	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	USP14	18	158383	214629	FALSE	1086	-0.476374446097734	34	47412	500536	NA	2	NA	NA	2	NA	453124	NA	4	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	USP15	12	62260338	62417431	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	26	2	FALSE	DIPLOID	PASS
659_bTo_pair	USP16	21	29024629	29054488	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	USP17L1	8	7332387	7333979	FALSE	510	-0.906181747703467	12	166288	7823395	0.365165917639896	1	0	0.365165917639896	1	0	7657107	1	48	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	USP17L10	4	9210657	9212608	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	1	1	FALSE	GAIN	PASS
659_bTo_pair	USP17L11	4	9215405	9217356	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	2	1	FALSE	GAIN	PASS
659_bTo_pair	USP17L15	4	9234385	9236334	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	1	0	FALSE	GAIN	PASS
659_bTo_pair	USP17L17	4	9243879	9245830	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	3	2	FALSE	GAIN	PASS
659_bTo_pair	USP17L18	4	9248630	9250581	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	2	1	FALSE	GAIN	PASS
659_bTo_pair	USP17L22	4	9267619	9269570	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	3	1	FALSE	GAIN	PASS
659_bTo_pair	USP17L4	8	7337115	7338707	FALSE	510	-0.906181747703467	12	166288	7823395	0.365165917639896	1	0	0.365165917639896	1	0	7657107	1	48	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	USP18	22	18149899	18177397	FALSE	1240	-0.594689860601271	26	15528179	18606839	NA	2	NA	NA	2	NA	3078660	NA	21	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	USP19	3	49108046	49120938	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	29	0	FALSE	HETLOSS	PASS
659_bTo_pair	USP2	11	119355215	119381726	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	USP20	9	129834698	129881838	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	26	0	FALSE	HETLOSS	PASS
659_bTo_pair	USP21	1	161159450	161165723	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	USP22	17	20999593	21043760	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	13	0	FALSE	CNLOH	PASS
659_bTo_pair	USP24	1	55066359	55215113	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	70	0	FALSE	DIPLOID	PASS
659_bTo_pair	USP25	21	15730025	15880069	FALSE	1226	-0.497902353462048	30	10413729	34716325	1	2	1	1	2	1	24302596	1	105	28	2	FALSE	DIPLOID	PASS
659_bTo_pair	USP26	23	133024631	133097109	FALSE	1335	0.100243493544559	59	130066940	134244999	0.308533751035793	5	NA	0.308533751035793	5	NA	4178059	NA	21	11	0	FALSE	AMP (many states)	PASS
659_bTo_pair	USP27X	23	49879948	49882565	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	6	0	FALSE	AMP (many states)	PASS
659_bTo_pair	USP28	11	113797874	113875570	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	29	1	FALSE	HETLOSS	PASS
659_bTo_pair	USP29	19	57119138	57131926	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	12	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	USP3	15	63504511	63594640	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	USP30	12	109023089	109088026	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	USP31	16	23061406	23149270	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	23	0	FALSE	DIPLOID	PASS
659_bTo_pair	USP32	17	60179094	60422470	FALSE	1060	-0.47151484718074	34	59953129	60500406	NA	2	NA	NA	2	NA	547277	NA	7	36	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	USP33	1	77695987	77759852	FALSE	25	-0.394411030612058	39	74026891	77942032	NA	2	NA	NA	2	NA	3915141	NA	22	24	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	USP34	2	61187463	61470769	FALSE	118	-0.436789875977301	34	60942397	61470693	NA	2	NA	NA	2	NA	528296	NA	5	87	5	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	USP35	11	78188812	78214711	FALSE	712	-0.188800010767045	48	77590086	86068715	0.365165917639896	3	NA	0.365165917639896	3	NA	8478629	NA	30	17	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	USP36	17	78787381	78841441	FALSE	1080	-0.537824093701074	27	76741010	78870935	1	2	1	1	2	1	2129925	1	20	23	1	FALSE	DIPLOID	PASS
659_bTo_pair	USP37	2	218450251	218568361	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	23	0	FALSE	HETLOSS	PASS
659_bTo_pair	USP38	4	143184917	143223830	FALSE	299	0.409843796005738	66	142077796	143185731	0.364342740527346	7	NA	0.364342740527346	7	NA	1107935	NA	2	17	0	TRUE	INDETERMINATE	PASS
659_bTo_pair	USP39	2	85602856	85649282	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	USP4	3	49277831	49340712	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	USP40	2	233475520	233566782	FALSE	187	-0.52223834900828	27	227995668	233565397	1	2	1	1	2	1	5569729	1	47	33	1	FALSE	DIPLOID	PASS
659_bTo_pair	USP41	22	20350578	20390758	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	12	2	FALSE	CNLOH	PASS
659_bTo_pair	USP42	7	6104884	6161564	FALSE	456	-0.240618790532325	45	6028682	12688782	0.279823559258657	3	0	0.279823559258657	3	0	6660100	3	32	24	4	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	USP43	17	9644698	9729691	FALSE	1006	-0.894220729735546	12	8370429	10825247	0.365165917639896	1	0	0.365165917639896	1	0	2454818	1	31	20	2	FALSE	HETLOSS	PASS
659_bTo_pair	USP44	12	95516560	95551490	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	USP45	6	99432379	99521728	FALSE	411	-0.455063723695114	34	95586870	106069771	NA	2	NA	NA	2	NA	10482901	NA	27	19	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	USP46	4	52590972	52659335	FALSE	283	-0.7726728361031	19	49038034	54241294	0.365165917639896	1	0	0.365165917639896	1	0	5203260	1	15	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	USP47	11	11841423	11959323	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	33	4	FALSE	DIPLOID	PASS
659_bTo_pair	USP48	1	21678298	21783606	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	27	0	FALSE	DIPLOID	PASS
659_bTo_pair	USP49	6	41789896	41895361	FALSE	399	-0.575359055127692	26	41736131	41931766	NA	2	NA	NA	2	NA	195635	NA	9	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	USP5	12	6852128	6866632	FALSE	743	-0.145896859645485	51	6620180	6938488	0.365165917639896	3	NA	0.365165917639896	3	NA	318308	NA	20	21	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	USP50	15	50500562	50546708	FALSE	906	-0.753975485974629	19	49508303	51105073	0.365165917639896	1	0	0.365165917639896	1	0	1596770	1	12	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	USP51	23	55484616	55489202	FALSE	1303	0.0232492223836125	56	53426353	57488811	0.365165917639896	4	NA	0.365165917639896	4	NA	4062458	NA	32	9	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	USP53	4	119212587	119295517	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	21	1	FALSE	DIPLOID	PASS
659_bTo_pair	USP54	10	73497538	73625953	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	31	0	FALSE	CNLOH	PASS
659_bTo_pair	USP6	17	5116438	5175034	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	33	4	FALSE	HETLOSS	PASS
659_bTo_pair	USP6NL	10	11453946	11611754	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	20	1	FALSE	CNLOH	PASS
659_bTo_pair	USP7	16	8892094	8964514	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	32	2	FALSE	DIPLOID	PASS
659_bTo_pair	USP8	15	50424380	50514419	FALSE	906	-0.753975485974629	19	49508303	51105073	0.365165917639896	1	0	0.365165917639896	1	0	1596770	1	12	23	0	FALSE	HETLOSS	PASS
659_bTo_pair	USP9X	23	41085635	41236579	FALSE	1288	0.0977543403034234	59	40162702	41232378	0.308533751035793	5	NA	0.308533751035793	5	NA	1069676	NA	6	51	0	FALSE	AMP (many states)	PASS
659_bTo_pair	USPL1	13	30617693	30660770	FALSE	828	-0.893717680890687	13	28659152	32311865	0.365165917639896	1	0	0.365165917639896	1	0	3652713	1	17	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	UST	6	148747328	149076990	FALSE	431	-0.504239059693729	30	143136912	149638436	1	2	1	1	2	1	6501524	1	29	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	UTF1	10	133230274	133231558	FALSE	676	-0.612597388333807	25	132187132	133626712	0.365165917639896	1	0	0.365165917639896	1	0	1439580	1	27	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	UTP11	1	38009258	38024824	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	UTP14A	23	129906121	129929761	FALSE	1333	-0.260466887002759	46	126819804	129920771	0.298322295679939	3	NA	0.298322295679939	3	NA	3100967	NA	9	17	0	TRUE	GAIN (many states)	PASS
659_bTo_pair	UTP14C	13	52024691	52033600	FALSE	836	-0.444239733377228	32	50956423	72747004	0.365165917639896	2	0	0.365165917639896	2	0	21790581	2	40	12	0	FALSE	CNLOH	PASS
659_bTo_pair	UTP15	5	73565443	73583377	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	12	2	FALSE	HETLOSS	PASS
659_bTo_pair	UTP18	17	51260528	51297936	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	14	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	UTP20	12	101280109	101386616	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	65	4	FALSE	DIPLOID	PASS
659_bTo_pair	UTP23	8	116766503	116849463	FALSE	561	-0.210477706860293	47	102652438	116770243	0.365165917639896	3	1	0.365165917639896	3	1	14117805	2	32	16	1	TRUE	GAIN	PASS
659_bTo_pair	UTP25	1	209828007	209857565	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	14	3	FALSE	DIPLOID	PASS
659_bTo_pair	UTP3	4	70688479	70690551	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	UTP4	16	69131291	69231130	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	18	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	UTP6	17	31860899	31901765	FALSE	1020	-0.750634304030824	19	31391980	31901545	0.365165917639896	1	0	0.365165917639896	1	0	509565	1	3	19	1	FALSE	HETLOSS	PASS
659_bTo_pair	UTRN	6	144285701	144853034	FALSE	431	-0.504239059693729	30	143136912	149638436	1	2	1	1	2	1	6501524	1	29	77	7	FALSE	DIPLOID	PASS
659_bTo_pair	UTS2	1	7843083	7853512	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	UTS2B	3	191267168	191330536	FALSE	269	-0.263219948753545	44	189957970	195888442	0.345317016959666	3	1	0.345317016959666	3	1	5930472	2	31	6	0	FALSE	GAIN	PASS
659_bTo_pair	UTS2R	17	82374230	82375586	FALSE	1084	-0.543851984983915	27	80991908	82404023	1	2	1	1	2	1	1412115	1	54	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	UVRAG	11	75815167	76143195	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	17	1	FALSE	GAIN	PASS
659_bTo_pair	UVSSA	4	1347266	1395992	FALSE	272	-0.300029378244858	40	85877	1745020	0.308149309490068	3	1	0.308149309490068	3	1	1659143	2	29	21	6	FALSE	GAIN	PASS
659_bTo_pair	UXS1	2	106093303	106194339	FALSE	132	-0.483883661440445	30	98600791	108683867	1	2	1	1	2	1	10083076	1	58	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	UXT	23	47651798	47659161	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	6	0	FALSE	AMP (many states)	PASS
659_bTo_pair	VAC14	16	70687439	70801161	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	19	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	VAMP1	12	6462237	6470987	FALSE	741	-0.251609480735115	44	4489790	6567957	0.345317016959666	3	1	0.345317016959666	3	1	2078167	2	28	6	0	FALSE	GAIN	PASS
659_bTo_pair	VAMP2	17	8159149	8163546	FALSE	1004	-0.905703364358502	13	8096639	8190110	0.365165917639896	1	0	0.365165917639896	1	0	93471	1	7	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	VAMP3	1	7771269	7781432	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	VAMP4	1	171700160	171742247	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	VAMP5	2	85584408	85593412	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	VAMP8	2	85561562	85582031	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	VANGL1	1	115641953	115698224	FALSE	37	-0.781726809773331	16	114718157	116404480	0.365165917639896	1	0	0.365165917639896	1	0	1686323	1	12	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	VANGL2	1	160400586	160428678	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	VAPA	18	9914002	9960021	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	7	0	FALSE	GAIN	PASS
659_bTo_pair	VAPB	20	58389122	58451101	FALSE	1221	-0.44936578355072	34	56249153	58715213	NA	2	NA	NA	2	NA	2466060	NA	27	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	VARS	6	31777518	31795953	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	27	1	FALSE	HETLOSS	PASS
659_bTo_pair	VARS2	6	30908242	30926459	FALSE	379	-0.524744136561063	27	30546321	31270541	1	2	1	1	2	1	724220	1	30	43	0	FALSE	DIPLOID	PASS
659_bTo_pair	VASH1	14	76762189	76783015	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	9	2	FALSE	DIPLOID	PASS
659_bTo_pair	VASH2	1	212950520	212992037	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	VASN	16	4371848	4383528	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	VASP	19	45506579	45526983	FALSE	1185	-0.722505986830795	18	45468696	46850161	0.180216333675297	0	0	0.180216333675297	0	0	1381465	0	46	13	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	VAT1	17	43014605	43025123	FALSE	1040	-0.646197503395479	26	42761348	43039396	NA	2	NA	NA	2	NA	278048	NA	18	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	VAT1L	16	77788530	77980107	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	VAV1	19	6772714	6857366	FALSE	1128	-0.566723388755247	23	6665178	7083719	0.186356639256811	1	0	0.186356639256811	1	0	418541	1	13	27	0	FALSE	HETLOSS	PASS
659_bTo_pair	VAV2	9	133761894	133992604	FALSE	627	-0.867007674319489	12	132986776	134157867	0.365165917639896	1	0	0.365165917639896	1	0	1171091	1	28	31	5	FALSE	HETLOSS	PASS
659_bTo_pair	VAV3	1	107571160	107965144	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	28	3	FALSE	HETLOSS	PASS
659_bTo_pair	VAX1	10	117128521	117138301	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	8	0	FALSE	CNLOH	PASS
659_bTo_pair	VAX2	2	70900590	70965373	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	19	3	FALSE	DIPLOID	PASS
659_bTo_pair	VBP1	23	155197007	155239817	FALSE	1341	-0.0231097163941018	55	154552015	155545250	0.328696605851359	4	NA	0.328696605851359	4	NA	993235	NA	23	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	VCAM1	1	100719742	100739045	FALSE	32	-0.441874489475641	34	100273343	107324874	NA	2	NA	NA	2	NA	7051531	NA	18	16	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	VCAN	5	83471465	83582303	FALSE	327	-0.729214269739125	19	80961009	86619409	0.365165917639896	1	0	0.365165917639896	1	0	5658400	1	14	47	5	FALSE	HETLOSS	PASS
659_bTo_pair	VCL	10	73995193	74121363	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	24	0	FALSE	CNLOH	PASS
659_bTo_pair	VCP	9	35056064	35073249	FALSE	587	-0.488844946991907	32	32784887	35072361	0.365165917639896	2	0	0.365165917639896	2	0	2287474	2	43	18	2	FALSE	CNLOH	PASS
659_bTo_pair	VCPIP1	8	66628487	66667217	FALSE	550	-0.186881774239562	48	60208949	67746087	0.365165917639896	3	NA	0.365165917639896	3	NA	7537138	NA	33	16	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	VCPKMT	14	50108632	50116600	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	VCX	23	7842262	7844143	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	4	1	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	VCX2	23	8169944	8171267	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	2	1	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	VCX3A	23	6533618	6535118	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	3	1	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	VCX3B	23	8464830	8466510	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	4	3	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	VDAC1	5	133971915	134005133	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	VDAC2	10	75210154	75231448	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	11	0	FALSE	CNLOH	PASS
659_bTo_pair	VDAC3	8	42391624	42405897	FALSE	541	-0.815492706726597	16	42338595	47735321	0.365165917639896	1	0	0.365165917639896	1	0	5396726	1	15	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	VDR	12	47841537	47943048	FALSE	766	-0.557616146966431	26	45922034	47968195	NA	2	NA	NA	2	NA	2046161	NA	13	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	VEGFA	6	43770184	43786487	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	26	6	TRUE	DIPLOID	PASS
659_bTo_pair	VEGFB	11	64234538	64238793	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	VEGFC	4	176683538	176792727	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	9	2	FALSE	HETLOSS	PASS
659_bTo_pair	VEGFD	23	15345591	15384376	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	7	0	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	VENTX	10	133237404	133241929	FALSE	676	-0.612597388333807	25	132187132	133626712	0.365165917639896	1	0	0.365165917639896	1	0	1439580	1	27	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	VEPH1	3	157259742	157533619	FALSE	250	-0.231905273142314	46	156829339	161250770	0.298322295679939	3	NA	0.298322295679939	3	NA	4421431	NA	26	23	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	VEZF1	17	57971547	57988259	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	VEZT	12	95217746	95302790	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	21	2	FALSE	DIPLOID	PASS
659_bTo_pair	VGF	7	101162509	101165593	FALSE	484	-0.570670723449775	26	101042591	102111653	NA	2	NA	NA	2	NA	1069062	NA	15	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	VGLL1	23	136532152	136556807	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	VGLL2	6	117265558	117273565	FALSE	417	-0.520434008170675	29	114058103	117272433	NA	2	NA	NA	2	NA	3214330	NA	20	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	VGLL3	3	86876388	86991119	FALSE	232	-0.785224171872638	14	72888305	88156485	0.365165917639896	1	0	0.365165917639896	1	0	15268180	1	18	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	VGLL4	3	11556070	11771350	FALSE	199	-1.0441448018759	8	10200366	12187515	0.342391532111247	0	0	0.342391532111247	0	0	1987149	0	14	12	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	VHL	3	10141008	10152220	TRUE	198	0.122401387291047	59	10021483	10178045	0.308533751035793	5	NA	0.308533751035793	5	NA	156562	NA	5	16	0	FALSE	AMP (many states)	PASS
659_bTo_pair	VHLL	1	156298624	156299299	FALSE	51	-0.551903011207355	27	155914163	156858568	1	2	1	1	2	1	944405	1	40	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	VIL1	2	218419092	218453295	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	20	1	FALSE	HETLOSS	PASS
659_bTo_pair	VILL	3	37988059	38007188	FALSE	210	-0.747326004597467	19	37329112	38136668	0.365165917639896	1	0	0.365165917639896	1	0	807556	1	7	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	VIM	10	17228259	17237593	FALSE	636	-0.467333105515053	33	10796823	26860871	0.344071079426502	2	0	0.344071079426502	2	0	16064048	2	78	11	0	FALSE	CNLOH	PASS
659_bTo_pair	VIP	6	152750798	152759765	FALSE	440	-0.500001062559341	30	152129628	156771069	1	2	1	1	2	1	4641441	1	14	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	VIPAS39	14	77426675	77457952	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	19	1	FALSE	DIPLOID	PASS
659_bTo_pair	VIPR1	3	42489299	42537573	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	13	2	FALSE	HETLOSS	PASS
659_bTo_pair	VIPR2	7	159028175	159144957	FALSE	509	-0.56054035608462	23	152759958	159144708	0.186356639256811	1	0	0.186356639256811	1	0	6384750	1	20	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	VIRMA	8	94487693	94553529	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	33	2	FALSE	GAIN	PASS
659_bTo_pair	VIT	2	36696690	36814792	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	17	5	FALSE	DIPLOID	PASS
659_bTo_pair	VKORC1	16	31090842	31095980	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	VKORC1L1	7	65873166	65959563	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	VLDLR	9	2621834	2660053	FALSE	574	-0.919846303005392	13	2198627	4849539	0.365165917639896	1	0	0.365165917639896	1	0	2650912	1	11	20	3	FALSE	HETLOSS	PASS
659_bTo_pair	VMA21	23	151396515	151409364	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	3	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	VMAC	19	5904858	5910853	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	VMO1	17	4785285	4786433	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	VMP1	17	59707192	59842255	FALSE	1058	-0.423419268198233	34	58422367	59890994	NA	2	NA	NA	2	NA	1468627	NA	20	11	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	VN1R1	19	57454790	57457142	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	5	0	FALSE	GAIN	PASS
659_bTo_pair	VN1R2	19	53258292	53261837	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	VN1R4	19	53266676	53267723	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	VNN1	6	132681590	132714049	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	VNN2	6	132743870	132763459	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	VNN3	6	132722787	132734765	FALSE	423	-0.529500649805076	27	127155371	134029688	1	2	1	1	2	1	6874317	1	42	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	VOPP1	7	55436056	55572988	FALSE	469	0.506065915308728	68	55366244	55473063	0.364342740527346	7	NA	0.364342740527346	7	NA	106819	NA	2	11	0	TRUE	INDETERMINATE	PASS
659_bTo_pair	VPREB1	22	22244675	22245515	FALSE	1248	-0.440655178794865	34	21923114	22646364	NA	2	NA	NA	2	NA	723250	NA	7	3	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	VPREB3	22	23752743	23754468	FALSE	1252	-0.948790128902656	11	23317677	23779437	0.289956079954009	0	0	0.289956079954009	0	0	461760	0	9	3	0	FALSE	HOMDEL	PASS
659_bTo_pair	VPS11	11	119067692	119081978	FALSE	728	-0.487905654975058	30	118527582	119195409	1	2	1	1	2	1	667827	1	26	18	1	FALSE	DIPLOID	PASS
659_bTo_pair	VPS13A	9	77177353	77421541	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	80	3	FALSE	DIPLOID	PASS
659_bTo_pair	VPS13B	8	99013266	99877580	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	74	0	FALSE	GAIN	PASS
659_bTo_pair	VPS13C	15	61852389	62060473	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	92	4	FALSE	HETLOSS	PASS
659_bTo_pair	VPS13D	1	12230030	12512047	FALSE	4	-0.444131701949566	30	11267576	13225359	1	2	1	1	2	1	1957783	1	42	83	0	FALSE	DIPLOID	PASS
659_bTo_pair	VPS16	20	2840703	2866732	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	24	0	FALSE	HETLOSS	PASS
659_bTo_pair	VPS18	15	40894430	40903975	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	VPS25	17	42773436	42779599	FALSE	1040	-0.646197503395479	26	42761348	43039396	NA	2	NA	NA	2	NA	278048	NA	18	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	VPS26A	10	69123512	69172861	FALSE	651	-0.523280686314431	28	68722553	70760843	0.351300687168522	2	0	0.351300687168522	2	0	2038290	2	27	10	0	FALSE	CNLOH	PASS
659_bTo_pair	VPS26B	11	134224645	134247792	FALSE	734	-0.516486951202814	27	128842412	134387591	1	2	1	1	2	1	5545179	1	27	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	VPS26C	21	37223420	37267919	FALSE	1228	-0.430637379115077	30	36009679	38367602	1	2	1	1	2	1	2357923	1	17	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	VPS28	8	144423601	144428563	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	VPS29	12	110491097	110502117	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	VPS33A	12	122229564	122266521	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	VPS33B	15	90998416	91022603	FALSE	929	-0.700679172673924	22	90876261	92655591	0.291335969972972	1	0	0.291335969972972	1	0	1779330	1	13	23	0	FALSE	HETLOSS	PASS
659_bTo_pair	VPS35	16	46656132	46689518	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	VPS35L	16	19555240	19706793	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	32	0	FALSE	DIPLOID	PASS
659_bTo_pair	VPS36	13	52412602	52450628	FALSE	836	-0.444239733377228	32	50956423	72747004	0.365165917639896	2	0	0.365165917639896	2	0	21790581	2	40	14	0	FALSE	CNLOH	PASS
659_bTo_pair	VPS37A	8	17246571	17302427	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	VPS37B	12	122865328	122896444	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	VPS37C	11	61130256	61161617	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	6	0	FALSE	GAIN	PASS
659_bTo_pair	VPS37D	7	73667825	73672112	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	VPS39	15	42158701	42208316	FALSE	898	-0.892191685906218	12	42081573	42681446	0.365165917639896	1	0	0.365165917639896	1	0	599873	1	13	26	5	FALSE	HETLOSS	PASS
659_bTo_pair	VPS41	7	38722963	38932394	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	29	1	FALSE	GAIN	PASS
659_bTo_pair	VPS45	1	150067279	150145329	FALSE	45	-0.511122817899307	27	146019672	150559767	1	2	1	1	2	1	4540095	1	52	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	VPS4A	16	69311356	69326939	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	VPS4B	18	63389190	63422483	FALSE	1111	-0.872352968035647	12	63331800	74584528	0.365165917639896	1	0	0.365165917639896	1	0	11252728	1	31	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	VPS50	7	93232340	93361121	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	29	2	FALSE	HETLOSS	PASS
659_bTo_pair	VPS51	11	65089324	65111860	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	14	0	FALSE	GAIN	PASS
659_bTo_pair	VPS52	6	33250272	33272047	FALSE	389	-0.565050845620731	23	33163789	33316917	0.186356639256811	1	0	0.186356639256811	1	0	153128	1	13	20	2	FALSE	HETLOSS	PASS
659_bTo_pair	VPS53	17	508668	721717	FALSE	996	-0.883704003468192	13	148164	1298296	0.365165917639896	1	0	0.365165917639896	1	0	1150132	1	14	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	VPS54	2	63892146	64019072	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	25	0	FALSE	DIPLOID	PASS
659_bTo_pair	VPS72	1	151169987	151195321	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	VPS8	3	184812143	185052614	FALSE	259	-0.260370931250901	44	183654025	185254015	0.345317016959666	3	1	0.345317016959666	3	1	1599990	2	31	48	0	FALSE	GAIN	PASS
659_bTo_pair	VPS9D1	16	89707134	89720986	FALSE	991	-0.654420383530572	22	89508463	89733977	0.291335969972972	1	0	0.291335969972972	1	0	225514	1	10	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	VRK1	14	96797304	96931722	FALSE	876	-0.546199181806584	27	96039535	102050530	1	2	1	1	2	1	6010995	1	30	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	VRK2	2	57907629	58159920	FALSE	112	-0.500204609420994	34	55349629	58154733	NA	2	NA	NA	2	NA	2805104	NA	7	16	1	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	VRK3	19	49976467	50025946	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	14	2	FALSE	HETLOSS	PASS
659_bTo_pair	VRTN	14	74303069	74360008	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	VSIG1	23	108044970	108079184	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	9	0	FALSE	AMP (many states)	PASS
659_bTo_pair	VSIG10	12	118063593	118136026	FALSE	808	-0.531025796359709	27	115966146	120090026	1	2	1	1	2	1	4123880	1	23	13	3	FALSE	DIPLOID	PASS
659_bTo_pair	VSIG10L	19	51331536	51342124	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	16	3	FALSE	HETLOSS	PASS
659_bTo_pair	VSIG2	11	124747472	124752238	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	VSIG4	23	66021738	66040125	FALSE	1307	-0.0742378241560309	55	64268602	66615968	0.328696605851359	4	NA	0.328696605851359	4	NA	2347366	NA	8	11	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	VSIG8	1	159854316	159862657	FALSE	53	-0.468536787408548	30	156872065	162599332	1	2	1	1	2	1	5727267	1	117	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	VSIR	10	71747559	71773498	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	8	1	FALSE	CNLOH	PASS
659_bTo_pair	VSNL1	2	17539126	17657018	FALSE	93	-0.378491391859888	39	15947306	17745967	NA	2	NA	NA	2	NA	1798661	NA	4	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	VSTM1	19	54040825	54063953	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	VSTM2A	7	54542325	54571080	FALSE	467	-0.115184963745349	53	50463290	54757565	0.273255132087987	4	NA	0.273255132087987	4	NA	4294275	NA	7	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	VSTM2B	19	29526499	29564479	FALSE	1163	-0.446590628984043	34	23373705	29714877	NA	2	NA	NA	2	NA	6341172	NA	10	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	VSTM2L	20	37903104	37945350	FALSE	1205	-0.619744376635615	23	37518926	41023791	0.186356639256811	1	0	0.186356639256811	1	0	3504865	1	19	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	VSTM4	10	49014245	49115509	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	10	0	FALSE	CNLOH	PASS
659_bTo_pair	VSTM5	11	93818232	93850531	FALSE	715	-0.44311716102168	34	90214063	94410681	NA	2	NA	NA	2	NA	4196618	NA	16	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	VSX1	20	25070885	25082365	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	VSX2	14	74239472	74262738	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	VTA1	6	142147162	142224689	FALSE	429	-0.412609995390511	39	138092232	142443520	NA	2	NA	NA	2	NA	4351288	NA	18	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	VTCN1	1	117143587	117210960	FALSE	40	1.20436461897056	84	117120948	117156910	0.364342740527346	14	NA	0.364342740527346	14	NA	35962	NA	2	14	4	TRUE	AMP	PASS
659_bTo_pair	VTI1A	10	112446998	112818744	FALSE	671	-0.443752838916331	34	110781853	112815244	NA	2	NA	NA	2	NA	2033391	NA	10	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	VTI1B	14	67647075	67674831	FALSE	862	-0.496151350288089	31	65561584	67816009	1	2	1	1	2	1	2254425	1	17	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	VTN	17	28367276	28373091	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	VWA1	1	1434861	1442882	FALSE	1	-0.772202493061769	18	69409	1482624	0.180216333675297	0	0	0.180216333675297	0	0	1413215	0	36	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	VWA2	10	114239330	114291513	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	17	0	FALSE	CNLOH	PASS
659_bTo_pair	VWA3A	16	22092538	22156966	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	33	2	FALSE	DIPLOID	PASS
659_bTo_pair	VWA3B	2	98087116	98313299	FALSE	130	-0.589699300815548	26	97757310	98396089	NA	2	NA	NA	2	NA	638779	NA	3	27	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	VWA5A	11	124115362	124147721	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	18	2	FALSE	DIPLOID	PASS
659_bTo_pair	VWA5B1	1	20290919	20354894	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	25	2	FALSE	DIPLOID	PASS
659_bTo_pair	VWA5B2	3	184230429	184242329	FALSE	259	-0.260370931250901	44	183654025	185254015	0.345317016959666	3	1	0.345317016959666	3	1	1599990	2	31	21	5	FALSE	GAIN	PASS
659_bTo_pair	VWA7	6	31765590	31777294	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	VWA8	13	41566837	41961120	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	45	1	FALSE	HETLOSS	PASS
659_bTo_pair	VWC2	7	49773661	49921950	FALSE	465	0.0412518069674403	56	48245888	50159047	0.365165917639896	4	NA	0.365165917639896	4	NA	1913159	NA	5	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	VWC2L	2	214411065	214578959	FALSE	174	-0.596604116836576	26	213007521	214575779	NA	2	NA	NA	2	NA	1568258	NA	3	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	VWCE	11	61258286	61295424	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	22	0	FALSE	GAIN	PASS
659_bTo_pair	VWDE	7	12330885	12403941	FALSE	456	-0.240618790532325	45	6028682	12688782	0.279823559258657	3	0	0.279823559258657	3	0	6660100	3	32	37	1	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	VWF	12	5948874	6124770	FALSE	741	-0.251609480735115	44	4489790	6567957	0.345317016959666	3	1	0.345317016959666	3	1	2078167	2	28	59	7	FALSE	GAIN	PASS
659_bTo_pair	VXN	8	66493208	66518524	FALSE	550	-0.186881774239562	48	60208949	67746087	0.365165917639896	3	NA	0.365165917639896	3	NA	7537138	NA	33	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	WAC	10	28532493	28623112	FALSE	638	-0.441875687518437	32	27112127	31908266	0.365165917639896	2	0	0.365165917639896	2	0	4796139	2	18	16	0	FALSE	CNLOH	PASS
659_bTo_pair	WAPL	10	86435256	86521815	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	24	2	FALSE	CNLOH	PASS
659_bTo_pair	WARS	14	100333788	100376805	FALSE	876	-0.546199181806584	27	96039535	102050530	1	2	1	1	2	1	6010995	1	30	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	WARS2	1	119031216	119140671	FALSE	43	-0.890933866500247	13	117628427	119906570	0.365165917639896	1	0	0.365165917639896	1	0	2278143	1	13	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	WAS	23	48676596	48691427	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	12	0	FALSE	AMP (many states)	PASS
659_bTo_pair	WASF1	6	110099819	110180004	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	WASF2	1	27404226	27490158	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	WASF3	13	26557703	26688948	FALSE	824	-0.820211361281197	14	23365275	27988570	0.365165917639896	1	0	0.365165917639896	1	0	4623295	1	32	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	WASHC1	9	14521	73865	FALSE	570	-0.801602085682206	16	14889	1057241	0.365165917639896	1	0	0.365165917639896	1	0	1042352	1	9	7	2	FALSE	HETLOSS	PASS
659_bTo_pair	WASHC2A	10	50067888	50133506	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	23	4	FALSE	CNLOH	PASS
659_bTo_pair	WASHC2C	10	45727200	45792961	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	26	2	FALSE	CNLOH	PASS
659_bTo_pair	WASHC3	12	102012927	102062149	FALSE	796	-0.448514489413771	30	92422570	102197761	1	2	1	1	2	1	9775191	1	54	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	WASHC4	12	105107324	105169134	FALSE	798	-0.492720037723834	34	102839233	105367537	NA	2	NA	NA	2	NA	2528304	NA	20	33	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	WASHC5	8	125024260	125091840	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	28	2	FALSE	GAIN	PASS
659_bTo_pair	WASL	7	123681935	123749067	FALSE	490	-0.576498321273708	26	116888215	124790543	NA	2	NA	NA	2	NA	7902328	NA	33	13	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	WBP1	2	74458329	74460891	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	WBP11	12	14784579	14803540	FALSE	753	-0.517160615058114	27	12726042	18242949	1	2	1	1	2	1	5516907	1	31	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	WBP1L	10	102743901	102834516	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	13	2	FALSE	CNLOH	PASS
659_bTo_pair	WBP2	17	75845699	75856507	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	WBP2NL	22	41998725	42058456	FALSE	1269	-0.443951758803067	34	41205309	42514754	NA	2	NA	NA	2	NA	1309445	NA	31	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	WBP4	13	41061274	41084006	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	WDCP	2	24029340	24049575	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	WDFY1	2	223855716	223945387	FALSE	181	-0.697161202800517	22	222304006	224401731	0.291335969972972	1	0	0.291335969972972	1	0	2097725	1	12	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	WDFY2	13	51584455	51767707	FALSE	836	-0.444239733377228	32	50956423	72747004	0.365165917639896	2	0	0.365165917639896	2	0	21790581	2	40	12	0	FALSE	CNLOH	PASS
659_bTo_pair	WDFY3	4	84669610	84966391	FALSE	291	-0.458701040497953	34	83536708	87613131	NA	2	NA	NA	2	NA	4076423	NA	17	72	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	WDFY4	10	48684876	48982956	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	73	3	FALSE	CNLOH	PASS
659_bTo_pair	WDHD1	14	54938950	55027105	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	27	2	FALSE	DIPLOID	PASS
659_bTo_pair	WDPCP	2	63121383	63827843	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	32	0	FALSE	DIPLOID	PASS
659_bTo_pair	WDR1	4	10074339	10116949	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	16	2	FALSE	GAIN	PASS
659_bTo_pair	WDR11	10	120851175	120909524	FALSE	673	-0.48233074327136	32	113553119	120908712	0.365165917639896	2	0	0.365165917639896	2	0	7355593	2	47	29	1	FALSE	CNLOH	PASS
659_bTo_pair	WDR12	2	202874782	203014798	FALSE	166	-0.425780118113581	30	201288659	203854096	1	2	1	1	2	1	2565437	1	22	30	0	FALSE	DIPLOID	PASS
659_bTo_pair	WDR13	23	48590042	48608867	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	12	0	FALSE	AMP (many states)	PASS
659_bTo_pair	WDR17	4	176065834	176182818	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	30	3	FALSE	HETLOSS	PASS
659_bTo_pair	WDR18	19	984271	998438	FALSE	1114	-0.655663409425712	21	110745	1154207	0.140309795179477	0	0	0.140309795179477	0	0	1043462	0	39	11	4	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	WDR19	4	39182404	39285810	FALSE	280	-0.191477557443324	47	38829296	41740154	0.365165917639896	3	1	0.365165917639896	3	1	2910858	2	22	36	1	FALSE	GAIN	PASS
659_bTo_pair	WDR20	14	102139503	102224847	FALSE	877	1.40556460780986	88	102080983	102139979	0.364342740527346	16	NA	0.364342740527346	16	NA	58996	NA	2	15	0	TRUE	AMP	PASS
659_bTo_pair	WDR24	16	684622	690444	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	12	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	WDR25	14	100376418	100530303	FALSE	876	-0.546199181806584	27	96039535	102050530	1	2	1	1	2	1	6010995	1	30	12	2	FALSE	DIPLOID	PASS
659_bTo_pair	WDR26	1	224385143	224437033	FALSE	73	-0.45452765137292	30	207523818	225999205	1	2	1	1	2	1	18475387	1	94	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	WDR27	6	169457212	169702067	FALSE	449	-0.520973998932362	27	167374374	170584540	1	2	1	1	2	1	3210166	1	18	25	5	FALSE	DIPLOID	PASS
659_bTo_pair	WDR3	1	117929720	117966542	FALSE	43	-0.890933866500247	13	117628427	119906570	0.365165917639896	1	0	0.365165917639896	1	0	2278143	1	13	27	0	FALSE	HETLOSS	PASS
659_bTo_pair	WDR31	9	113313222	113340298	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	WDR33	2	127701022	127811187	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	33	2	FALSE	DIPLOID	PASS
659_bTo_pair	WDR34	9	128633661	128656787	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	WDR35	2	19910260	19990131	FALSE	95	-0.433432196219158	34	17816742	25164750	NA	2	NA	NA	2	NA	7348008	NA	38	30	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	WDR36	5	111091716	111130502	FALSE	329	-0.677285014234912	20	87394392	112419067	0.365165917639896	1	0	0.365165917639896	1	0	25024675	1	55	24	0	FALSE	HETLOSS	PASS
659_bTo_pair	WDR37	10	1049538	1132384	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	14	0	FALSE	CNLOH	PASS
659_bTo_pair	WDR38	9	124853417	124857890	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	WDR4	21	42843094	42879568	FALSE	1234	-0.544212636077936	27	41740855	44141314	1	2	1	1	2	1	2400459	1	31	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	WDR41	5	77425970	77620611	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	WDR43	2	28894643	28948222	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	19	2	FALSE	DIPLOID	PASS
659_bTo_pair	WDR44	23	118346073	118449961	FALSE	1326	0.081501992784242	59	111246621	119452040	0.308533751035793	5	NA	0.308533751035793	5	NA	8205419	NA	28	22	0	FALSE	AMP (many states)	PASS
659_bTo_pair	WDR45	23	49071470	49101170	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	13	0	FALSE	AMP (many states)	PASS
659_bTo_pair	WDR45B	17	82614562	82648553	FALSE	1085	-0.607666454607286	26	82405295	83094473	NA	2	NA	NA	2	NA	689178	NA	13	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	WDR46	6	33279108	33289527	FALSE	389	-0.565050845620731	23	33163789	33316917	0.186356639256811	1	0	0.186356639256811	1	0	153128	1	13	16	1	FALSE	HETLOSS	PASS
659_bTo_pair	WDR47	1	108970214	109042113	FALSE	33	-0.79030394980793	14	107395166	109761730	0.365165917639896	1	0	0.365165917639896	1	0	2366564	1	39	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	WDR48	3	39051998	39096671	FALSE	212	-0.750996176556328	19	38165958	40533064	0.365165917639896	1	0	0.365165917639896	1	0	2367106	1	26	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	WDR49	3	167478684	167653983	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	20	0	FALSE	GAIN	PASS
659_bTo_pair	WDR5	9	134135365	134159968	FALSE	627	-0.867007674319489	12	132986776	134157867	0.365165917639896	1	0	0.365165917639896	1	0	1171091	1	28	13	2	FALSE	HETLOSS	PASS
659_bTo_pair	WDR53	3	196554177	196568674	FALSE	271	-0.194588974812627	47	196198492	198169864	0.365165917639896	3	1	0.365165917639896	3	1	1971372	2	29	7	0	FALSE	GAIN	PASS
659_bTo_pair	WDR54	2	74421678	74425755	FALSE	122	-0.452056191708058	34	74135675	79121938	NA	2	NA	NA	2	NA	4986263	NA	37	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	WDR55	5	140664676	140674124	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	14	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	WDR59	16	74871367	75000173	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	29	0	FALSE	DIPLOID	PASS
659_bTo_pair	WDR5B	3	122412332	122416051	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	4	1	FALSE	GAIN	PASS
659_bTo_pair	WDR6	3	49007062	49015953	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	WDR60	7	158856578	158956747	FALSE	509	-0.56054035608462	23	152759958	159144708	0.186356639256811	1	0	0.186356639256811	1	0	6384750	1	20	28	0	FALSE	HETLOSS	PASS
659_bTo_pair	WDR61	15	78277835	78299794	FALSE	916	-0.698778125228905	20	75468760	79971003	0.365165917639896	1	0	0.365165917639896	1	0	4502243	1	44	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	WDR62	19	36054881	36105106	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	35	6	FALSE	HETLOSS	PASS
659_bTo_pair	WDR63	1	84999147	85133138	FALSE	27	-0.365760579101575	39	77969065	85252731	NA	2	NA	NA	2	NA	7283666	NA	23	35	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	WDR64	1	241652278	241802133	FALSE	84	-0.392646983169906	39	241532515	243426393	NA	2	NA	NA	2	NA	1893878	NA	10	27	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	WDR66	12	121917862	122003927	FALSE	814	-0.652137007233431	22	121849022	122019673	0.291335969972972	1	0	0.291335969972972	1	0	170651	1	5	26	3	FALSE	HETLOSS	PASS
659_bTo_pair	WDR7	18	56651343	57036606	FALSE	1105	-0.785555027616249	16	52752095	58670682	0.365165917639896	1	0	0.365165917639896	1	0	5918587	1	19	30	2	FALSE	HETLOSS	PASS
659_bTo_pair	WDR70	5	37379212	37753435	FALSE	314	-0.173277106490387	51	35904615	38924434	0.365165917639896	3	NA	0.365165917639896	3	NA	3019819	NA	16	18	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	WDR72	15	53513741	53762878	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	23	0	FALSE	HETLOSS	PASS
659_bTo_pair	WDR73	15	84639281	84654343	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	9	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	WDR74	11	62832342	62841809	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	10	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	WDR75	2	189441433	189475565	FALSE	159	-0.50094907723407	34	185815441	189771912	NA	2	NA	NA	2	NA	3956471	NA	17	22	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	WDR76	15	43826963	43868419	FALSE	902	-0.672637691845835	22	43521582	44676538	0.291335969972972	1	0	0.291335969972972	1	0	1154956	1	21	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	WDR77	1	111439890	111449376	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	WDR78	1	66812885	66924887	FALSE	23	-0.326404897444941	43	65224778	71080923	0.192136715055622	3	NA	0.192136715055622	3	NA	5856145	NA	29	17	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	WDR81	17	1716523	1738599	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	27	0	FALSE	HETLOSS	PASS
659_bTo_pair	WDR82	3	52254421	52288020	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	WDR83	19	12666800	12675832	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	WDR83OS	19	12668071	12669489	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	WDR86	7	151375909	151410727	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	13	2	FALSE	HETLOSS	PASS
659_bTo_pair	WDR87	19	37884823	37906677	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	35	0	FALSE	HETLOSS	PASS
659_bTo_pair	WDR88	19	33132090	33175795	FALSE	1165	-0.570153591761829	23	29923697	33225768	0.186356639256811	1	0	0.186356639256811	1	0	3302071	1	18	12	3	FALSE	HETLOSS	PASS
659_bTo_pair	WDR89	14	63597039	63641861	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	WDR90	16	649311	667833	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	41	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	WDR91	7	135183839	135211534	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	WDR92	2	68122936	68157560	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	WDR93	15	89690797	89743638	FALSE	925	-0.863518905667221	13	89317527	90079704	0.365165917639896	1	0	0.365165917639896	1	0	762177	1	14	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	WDR97	8	144107726	144118315	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	28	0	FALSE	DIPLOID	PASS
659_bTo_pair	WDSUB1	2	159235793	159286799	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	WDTC1	1	27234516	27308633	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	WDYHV1	8	123416725	123470028	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	7	5	FALSE	GAIN	PASS
659_bTo_pair	WEE1	11	9573681	9593457	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	WEE2	7	141708353	141731271	FALSE	500	-0.745042700177313	19	140929950	142218464	0.365165917639896	1	0	0.365165917639896	1	0	1288514	1	15	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	WFDC1	16	84294646	84329851	FALSE	987	-0.578642888038652	23	81999201	85806436	0.186356639256811	1	0	0.186356639256811	1	0	3807235	1	31	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	WFDC10A	20	45629526	45631196	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	2	1	FALSE	DIPLOID	PASS
659_bTo_pair	WFDC10B	20	45684653	45705019	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	5	2	FALSE	DIPLOID	PASS
659_bTo_pair	WFDC11	20	45648563	45670270	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	WFDC12	20	45123425	45124465	FALSE	1211	-0.249905145449482	46	45110461	45330545	0.298322295679939	3	NA	0.298322295679939	3	NA	220084	NA	9	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	WFDC13	20	45702016	45708817	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	WFDC2	20	45469706	45481532	FALSE	1213	-0.238233999759016	46	45348351	45515632	0.298322295679939	3	NA	0.298322295679939	3	NA	167281	NA	8	4	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	WFDC3	20	45747944	45791932	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	WFDC5	20	45109452	45115172	FALSE	1210	-0.476296426145969	34	43513997	45110019	NA	2	NA	NA	2	NA	1596022	NA	26	4	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	WFDC6	20	45534196	45539495	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	WFDC8	20	45551153	45579326	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	WFDC9	20	45607939	45631268	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	5	2	FALSE	DIPLOID	PASS
659_bTo_pair	WFIKKN1	16	629239	634116	FALSE	936	-0.68505166653522	21	367746	1827744	0.140309795179477	0	0	0.140309795179477	0	0	1459998	0	64	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	WFIKKN2	17	50834650	50842348	FALSE	1055	-0.553053929266491	29	50696058	58352149	NA	2	NA	NA	2	NA	7656091	NA	46	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	WFS1	4	6269849	6303265	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	15	0	FALSE	GAIN	PASS
659_bTo_pair	WHAMM	15	82809628	82836108	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	15	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	WHRN	9	114402080	114505450	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	19	1	FALSE	DIPLOID	PASS
659_bTo_pair	WIF1	12	65050626	65121566	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	WIPF1	2	174559572	174682916	FALSE	153	-0.469039793655258	34	172736055	177217715	NA	2	NA	NA	2	NA	4481660	NA	28	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	WIPF2	17	40219304	40284136	FALSE	1030	-0.735138103765796	19	39868404	40278196	0.365165917639896	1	0	0.365165917639896	1	0	409792	1	14	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	WIPF3	7	29806486	29917066	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	11	1	FALSE	GAIN	PASS
659_bTo_pair	WIPI1	17	68420948	68457513	FALSE	1070	-0.476939588153593	30	65635933	68457397	1	2	1	1	2	1	2821464	1	18	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	WIPI2	7	5190188	5233826	FALSE	453	-0.32600279290147	42	3619174	5500988	0.189552622934988	3	0	0.189552622934988	3	0	1881814	3	12	13	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	WISP1	8	133191039	133231690	FALSE	565	-0.282741903777565	44	129748604	134610527	0.345317016959666	3	1	0.345317016959666	3	1	4861923	2	18	9	0	FALSE	GAIN	PASS
659_bTo_pair	WISP2	20	44714844	44728509	FALSE	1210	-0.476296426145969	34	43513997	45110019	NA	2	NA	NA	2	NA	1596022	NA	26	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	WISP3	6	112054072	112070969	FALSE	414	0.538907519348198	68	111660319	112071999	0.364342740527346	7	NA	0.364342740527346	7	NA	411680	NA	3	12	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	WIZ	19	15419980	15449951	FALSE	1151	-0.245775583538201	44	15355095	15913929	0.345317016959666	3	1	0.345317016959666	3	1	558834	2	15	17	0	FALSE	GAIN	PASS
659_bTo_pair	WLS	1	68098473	68233120	FALSE	23	-0.326404897444941	43	65224778	71080923	0.192136715055622	3	NA	0.192136715055622	3	NA	5856145	NA	29	14	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	WNK1	12	752593	911452	FALSE	737	-0.295216300061446	43	409362	894533	0.192136715055622	3	NA	0.192136715055622	3	NA	485171	NA	4	48	2	TRUE	GAIN (many states)	PASS
659_bTo_pair	WNK2	9	93184916	93320572	FALSE	606	-0.547644280946133	27	91214370	95094057	1	2	1	1	2	1	3879687	1	31	49	3	FALSE	DIPLOID	PASS
659_bTo_pair	WNK3	23	54192823	54358642	FALSE	1303	0.0232492223836125	56	53426353	57488811	0.365165917639896	4	NA	0.365165917639896	4	NA	4062458	NA	32	33	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	WNK4	17	42780678	42796936	FALSE	1040	-0.646197503395479	26	42761348	43039396	NA	2	NA	NA	2	NA	278048	NA	18	24	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	WNT1	12	48978453	48981676	FALSE	768	-0.491963868457131	34	48045387	49018767	NA	2	NA	NA	2	NA	973380	NA	28	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	WNT10A	2	218880363	218899581	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	WNT10B	12	48965340	48971763	FALSE	768	-0.491963868457131	34	48045387	49018767	NA	2	NA	NA	2	NA	973380	NA	28	7	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	WNT11	11	76186325	76210736	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	7	1	FALSE	GAIN	PASS
659_bTo_pair	WNT16	7	121325367	121341104	FALSE	490	-0.576498321273708	26	116888215	124790543	NA	2	NA	NA	2	NA	7902328	NA	33	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	WNT2	7	117275451	117323289	FALSE	490	-0.576498321273708	26	116888215	124790543	NA	2	NA	NA	2	NA	7902328	NA	33	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	WNT2B	1	112466541	112530165	FALSE	35	-0.731293916582705	17	109985078	114695618	0.365165917639896	1	0	0.365165917639896	1	0	4710540	1	57	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	WNT3	17	46762506	46833154	FALSE	1046	-0.746772159255206	19	45395806	47696360	0.365165917639896	1	0	0.365165917639896	1	0	2300554	1	26	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	WNT3A	1	228007051	228061260	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	WNT4	1	22117305	22143969	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	WNT5A	3	55465715	55490539	FALSE	226	-0.735184814125251	17	52637146	63845017	0.365165917639896	1	0	0.365165917639896	1	0	11207871	1	61	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	WNT5B	12	1529891	1647243	FALSE	739	-0.369471841682825	39	1104785	3873202	NA	2	NA	NA	2	NA	2768417	NA	20	12	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	WNT6	2	218859821	218874233	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	WNT7A	3	13816258	13880121	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	WNT7B	22	45920362	45977129	FALSE	1271	-0.350898193716427	41	45922979	50285791	0.284729887459054	3	0	0.284729887459054	3	0	4362812	3	30	7	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	WNT8A	5	138083892	138092365	FALSE	336	-0.752536733071469	19	135941639	138575278	0.365165917639896	1	0	0.365165917639896	1	0	2633639	1	24	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	WNT8B	10	100463041	100483744	FALSE	667	-0.410747198325625	37	100065346	102502670	0.323760785796635	2	0	0.323760785796635	2	0	2437324	2	46	8	0	FALSE	CNLOH	PASS
659_bTo_pair	WNT9A	1	227918656	227947898	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	WNT9B	17	46833201	46886730	FALSE	1046	-0.746772159255206	19	45395806	47696360	0.365165917639896	1	0	0.365165917639896	1	0	2300554	1	26	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	WRAP53	17	7686071	7703502	FALSE	1001	1.81828351212047	100	7655836	7689042	0.364342740527346	23	NA	0.364342740527346	23	NA	33206	NA	3	17	0	TRUE	AMP	PASS
659_bTo_pair	WRAP73	1	3630767	3652761	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	WRB	21	39377698	39428528	FALSE	1230	-0.572411047461507	26	38805300	41452836	NA	2	NA	NA	2	NA	2647536	NA	17	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	WRB-SH3BGR	21	39380332	39515506	FALSE	1230	-0.572411047461507	26	38805300	41452836	NA	2	NA	NA	2	NA	2647536	NA	17	26	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	WRN	8	31033801	31173769	FALSE	525	-0.288101084371472	45	31033906	32734628	0.279823559258657	3	0	0.279823559258657	3	0	1700722	3	2	41	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	WRNIP1	6	2765414	2786952	FALSE	366	-0.56930463675583	26	486737	3019480	NA	2	NA	NA	2	NA	2532743	NA	12	12	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	WSB1	17	27294076	27315926	FALSE	1018	-0.456219596757755	30	21304533	31045401	1	2	1	1	2	1	9740868	1	71	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	WSB2	12	118032694	118062430	FALSE	808	-0.531025796359709	27	115966146	120090026	1	2	1	1	2	1	4123880	1	23	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	WSCD1	17	6057807	6124427	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	WSCD2	12	108129471	108250537	FALSE	800	-0.469427795659526	30	106318322	111363455	1	2	1	1	2	1	5045133	1	55	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	WT1	11	32387775	32435630	TRUE	691	1.40107351098714	88	32382864	32440660	0.364342740527346	16	NA	0.364342740527346	16	NA	57796	NA	1	28	0	FALSE	AMP	PASS
659_bTo_pair	WTAP	6	159725585	159756319	FALSE	444	-0.505238631103688	30	158776425	160753038	1	2	1	1	2	1	1976613	1	17	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	WTIP	19	34481638	34512304	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	WWC1	5	168291651	168472303	FALSE	356	-0.773912908266316	17	162095550	171298806	0.365165917639896	1	0	0.365165917639896	1	0	9203256	1	21	27	0	FALSE	HETLOSS	PASS
659_bTo_pair	WWC2	4	183099293	183320777	FALSE	303	-0.701065623022065	20	152628477	184217749	0.365165917639896	1	0	0.365165917639896	1	0	31589272	1	97	30	2	FALSE	HETLOSS	PASS
659_bTo_pair	WWC3	23	10015562	10144478	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	26	2	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	WWOX	16	78099413	79212667	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	WWP1	8	86342738	86478420	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	28	2	FALSE	GAIN	PASS
659_bTo_pair	WWP2	16	69762306	69941741	FALSE	981	-0.451984813377021	34	68860458	70829785	NA	2	NA	NA	2	NA	1969327	NA	36	23	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	WWTR1	3	149517235	149736714	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	7	0	FALSE	GAIN	PASS
659_bTo_pair	XAB2	19	7619525	7629565	FALSE	1130	-0.690953718254595	21	7440128	7870576	0.140309795179477	0	0	0.140309795179477	0	0	430448	0	25	19	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	XAF1	17	6755447	6775647	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	XAGE2	23	52369030	52375680	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	1	0	FALSE	AMP (many states)	PASS
659_bTo_pair	XAGE3	23	52862525	52868068	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	4	1	FALSE	AMP (many states)	PASS
659_bTo_pair	XAGE5	23	52812204	52818301	FALSE	1298	0.14912386954477	60	49062121	52867061	0.364342740527346	5	NA	0.364342740527346	5	NA	3804940	NA	53	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	XBP1	22	28794555	28800597	FALSE	1255	0.261638839895489	63	28687966	29044744	0.364342740527346	6	NA	0.364342740527346	6	NA	356778	NA	5	8	1	FALSE	AMP (many states)	PASS
659_bTo_pair	XCL1	1	168576473	168582077	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	XCL2	1	168540765	168543997	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	XCR1	3	46017024	46027742	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	XDH	2	31334321	31414715	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	38	3	FALSE	DIPLOID	PASS
659_bTo_pair	XG	23	2752048	2816500	FALSE	1274	0.118344905012626	57	2782180	15775236	0.334914946507217	5	2	0.334914946507217	5	2	12993056	3	57	8	1	FALSE	AMP	suppress_segment_too_large
659_bTo_pair	XIAP	23	123859724	123913979	FALSE	1330	1.75700231074177	98	123733010	124378275	0.364342740527346	22	NA	0.364342740527346	22	NA	645265	NA	6	30	4	FALSE	AMP	PASS
659_bTo_pair	XIRP1	3	39183210	39192596	FALSE	212	-0.750996176556328	19	38165958	40533064	0.365165917639896	1	0	0.365165917639896	1	0	2367106	1	26	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	XIRP2	2	166888487	167259753	FALSE	151	-0.46511992269528	30	157995220	172504156	1	2	1	1	2	1	14508936	1	73	54	1	FALSE	DIPLOID	PASS
659_bTo_pair	XK	23	37685756	37732130	FALSE	1286	-0.229369008369366	46	37655739	38687617	0.298322295679939	3	NA	0.298322295679939	3	NA	1031878	NA	12	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	XKR3	22	16783412	16821699	FALSE	1240	-0.594689860601271	26	15528179	18606839	NA	2	NA	NA	2	NA	3078660	NA	21	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	XKR4	8	55102389	55542054	FALSE	545	0.0328509510438924	56	54463210	55824671	0.365165917639896	4	NA	0.365165917639896	4	NA	1361461	NA	4	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	XKR5	8	6808517	6835644	FALSE	510	-0.906181747703467	12	166288	7823395	0.365165917639896	1	0	0.365165917639896	1	0	7657107	1	48	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	XKR6	8	10896045	11201366	FALSE	516	-0.746159577374248	19	10611830	11564127	0.365165917639896	1	0	0.365165917639896	1	0	952297	1	9	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	XKR7	20	31968002	32003387	FALSE	1201	-0.583226555890856	26	31757461	32331296	NA	2	NA	NA	2	NA	573835	NA	13	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	XKR8	1	27959462	27968096	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	XKR9	8	70669365	70790371	FALSE	553	-0.248188717260806	46	68331252	73878866	0.298322295679939	3	NA	0.298322295679939	3	NA	5547614	NA	20	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	XKRX	23	100913445	100929433	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	8	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	XPA	9	97674909	97697357	FALSE	608	-0.541405085979946	27	95522076	99069752	1	2	1	1	2	1	3547676	1	31	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	XPC	3	14145147	14178783	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	21	4	FALSE	HETLOSS	PASS
659_bTo_pair	XPNPEP1	10	109864766	109923553	FALSE	669	-0.472536494511005	33	102645129	110562709	0.344071079426502	2	0	0.344071079426502	2	0	7917580	2	37	24	2	FALSE	CNLOH	PASS
659_bTo_pair	XPNPEP2	23	129738974	129769538	FALSE	1333	-0.260466887002759	46	126819804	129920771	0.298322295679939	3	NA	0.298322295679939	3	NA	3100967	NA	9	21	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	XPNPEP3	22	40857077	40932815	FALSE	1267	-0.448885551917151	34	39313004	41087696	NA	2	NA	NA	2	NA	1774692	NA	24	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	XPO1	2	61477849	61538626	FALSE	119	1.89046149924125	101	61477905	61538703	0.364342740527346	24	NA	0.364342740527346	24	NA	60798	NA	1	43	4	FALSE	AMP	PASS
659_bTo_pair	XPO4	13	20777329	20903048	FALSE	819	-0.883807164728579	13	19173884	20902691	0.365165917639896	1	0	0.365165917639896	1	0	1728807	1	14	24	0	FALSE	HETLOSS	PASS
659_bTo_pair	XPO5	6	43522330	43576075	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	32	0	FALSE	DIPLOID	PASS
659_bTo_pair	XPO6	16	28097979	28211920	FALSE	962	-0.522336070959039	29	27403203	28925074	NA	2	NA	NA	2	NA	1521871	NA	25	25	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	XPO7	8	21919671	22006585	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	29	3	FALSE	HETLOSS	PASS
659_bTo_pair	XPOT	12	64404350	64451127	FALSE	786	-0.408593585530327	35	57766231	68764746	1	2	1	1	2	1	10998515	1	44	28	1	FALSE	DIPLOID	PASS
659_bTo_pair	XPR1	1	180632004	180890251	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	XRCC1	19	43543040	43580473	FALSE	1180	1.26430641063836	86	43543393	43575522	0.364342740527346	15	NA	0.364342740527346	15	NA	32129	NA	2	20	0	TRUE	AMP	PASS
659_bTo_pair	XRCC2	7	152644779	152676165	TRUE	508	0.822490570887549	75	152139169	152681209	0.364342740527346	10	NA	0.364342740527346	10	NA	542040	NA	2	17	0	FALSE	AMP	PASS
659_bTo_pair	XRCC3	14	103697609	103715504	FALSE	882	1.72455944062591	97	103697843	103712024	0.364342740527346	21	NA	0.364342740527346	21	NA	14181	NA	2	20	5	TRUE	AMP	PASS
659_bTo_pair	XRCC4	5	83077498	83353787	FALSE	327	-0.729214269739125	19	80961009	86619409	0.365165917639896	1	0	0.365165917639896	1	0	5658400	1	14	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	XRCC5	2	216107464	216206303	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	XRCC6	22	41621119	41664048	FALSE	1269	-0.443951758803067	34	41205309	42514754	NA	2	NA	NA	2	NA	1309445	NA	31	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	XRN1	3	142306607	142448062	FALSE	246	-0.322519280750539	43	139344000	142447976	0.192136715055622	3	NA	0.192136715055622	3	NA	3103976	NA	19	44	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	XRN2	20	21303304	21389827	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	30	2	FALSE	DIPLOID	PASS
659_bTo_pair	XRRA1	11	74807739	74949200	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	26	3	FALSE	GAIN	PASS
659_bTo_pair	XXYLT1	3	195068279	195271167	FALSE	269	-0.263219948753545	44	189957970	195888442	0.345317016959666	3	1	0.345317016959666	3	1	5930472	2	31	6	0	FALSE	GAIN	PASS
659_bTo_pair	XYLB	3	38346760	38421348	FALSE	212	-0.750996176556328	19	38165958	40533064	0.365165917639896	1	0	0.365165917639896	1	0	2367106	1	26	21	2	FALSE	HETLOSS	PASS
659_bTo_pair	XYLT1	16	17101769	17470881	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	18	2	FALSE	DIPLOID	PASS
659_bTo_pair	XYLT2	17	50346092	50363138	FALSE	1053	-0.561829441831031	26	49646906	50626743	NA	2	NA	NA	2	NA	979837	NA	25	18	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	YAE1	7	39566376	39610320	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	6	1	FALSE	GAIN	PASS
659_bTo_pair	YAF2	12	42157104	42238349	FALSE	764	-0.478463991093384	34	40959192	45805435	NA	2	NA	NA	2	NA	4846243	NA	16	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	YAP1	11	102110461	102233423	FALSE	720	1.69499336359402	96	102110536	102350971	0.364342740527346	21	NA	0.364342740527346	21	NA	240435	NA	3	26	1	FALSE	AMP	PASS
659_bTo_pair	YARS	1	32775237	32818153	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	YARS2	12	32727490	32755902	FALSE	760	-0.171000692864655	50	31089058	38321207	0.218007130395584	4	2	0.218007130395584	4	2	7232149	2	15	20	0	FALSE	TETRAPLOID	PASS
659_bTo_pair	YBEY	21	46286337	46297751	FALSE	1239	-0.568555801579827	23	44960223	46664365	0.186356639256811	1	0	0.186356639256811	1	0	1704142	1	18	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	YBX1	1	42682427	42702349	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	YBX2	17	7288252	7294615	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	YBX3	12	10699089	10723312	FALSE	747	-0.468484389209336	30	8456076	10719078	1	2	1	1	2	1	2263002	1	41	10	1	TRUE	DIPLOID	PASS
659_bTo_pair	YDJC	22	21628089	21630064	FALSE	1246	-0.481954888210425	34	21001894	21693896	NA	2	NA	NA	2	NA	692002	NA	14	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	YEATS2	3	183697818	183812625	FALSE	259	-0.260370931250901	44	183654025	185254015	0.345317016959666	3	1	0.345317016959666	3	1	1599990	2	31	32	4	FALSE	GAIN	PASS
659_bTo_pair	YEATS4	12	69359703	69390796	FALSE	788	-0.518856535477169	29	68856633	69390188	NA	2	NA	NA	2	NA	533555	NA	4	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	YES1	18	721588	812546	FALSE	1088	2.16655216812143	107	721563	812421	0.364342740527346	30	NA	0.364342740527346	30	NA	90858	NA	1	23	3	FALSE	AMP	PASS
659_bTo_pair	YIF1A	11	66284580	66289170	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	8	0	FALSE	GAIN	PASS
659_bTo_pair	YIF1B	19	38305104	38317273	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	YIPF1	1	53851719	53889834	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	YIPF2	19	10922185	10928681	FALSE	1141	-0.578703281933348	26	10514217	10929669	NA	2	NA	NA	2	NA	415452	NA	14	8	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	YIPF3	6	43511827	43516990	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	YIPF4	2	32277910	32316594	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	YIPF5	5	144158159	144170714	FALSE	342	-0.839625408364611	12	142771377	149379185	0.365165917639896	1	0	0.365165917639896	1	0	6607808	1	38	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	YIPF6	23	68498323	68537285	FALSE	1311	0.0481524733197309	56	68048478	70452009	0.365165917639896	4	NA	0.365165917639896	4	NA	2403531	NA	19	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	YIPF7	4	44622065	44678556	FALSE	282	-0.204234033978701	47	41752697	49032685	0.365165917639896	3	1	0.365165917639896	3	1	7279988	2	31	6	2	FALSE	GAIN	PASS
659_bTo_pair	YJEFN3	19	19528861	19537581	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	8	1	FALSE	AMP (many states)	PASS
659_bTo_pair	YJU2	19	4247079	4269090	FALSE	1124	-0.62008955817668	23	4168484	5151543	0.186356639256811	1	0	0.186356639256811	1	0	983059	1	28	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	YKT6	7	44200968	44214294	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	7	0	FALSE	GAIN	PASS
659_bTo_pair	YLPM1	14	74763366	74859435	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	39	2	FALSE	DIPLOID	PASS
659_bTo_pair	YME1L1	10	27110112	27155266	FALSE	638	-0.441875687518437	32	27112127	31908266	0.365165917639896	2	0	0.365165917639896	2	0	4796139	2	18	20	4	FALSE	CNLOH	PASS
659_bTo_pair	YOD1	1	207043849	207052980	FALSE	71	-0.474443448890496	34	206798940	207049323	NA	2	NA	NA	2	NA	250383	NA	9	6	0	TRUE	DIPLOID or CNLOH	PASS
659_bTo_pair	YPEL1	22	21697544	21735834	FALSE	1247	1.39716358593011	87	21694782	21867333	0.364342740527346	16	NA	0.364342740527346	16	NA	172551	NA	3	4	0	FALSE	AMP	PASS
659_bTo_pair	YPEL2	17	59331689	59401729	FALSE	1058	-0.423419268198233	34	58422367	59890994	NA	2	NA	NA	2	NA	1468627	NA	20	4	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	YPEL3	16	30092314	30096915	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	YPEL4	11	57645087	57649944	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	4	0	FALSE	GAIN	PASS
659_bTo_pair	YPEL5	2	30146941	30160533	FALSE	102	-0.382675839883114	35	29239770	38960649	1	2	1	1	2	1	9720879	1	45	2	0	FALSE	DIPLOID	PASS
659_bTo_pair	YRDC	1	37802944	37808185	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	YTHDC1	4	68310387	68350089	FALSE	287	-0.401202275089138	35	67472573	80201428	1	2	1	1	2	1	12728855	1	106	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	YTHDC2	5	113513683	113595285	FALSE	331	-0.706980197323045	20	112861366	122075379	0.365165917639896	1	0	0.365165917639896	1	0	9214013	1	31	30	5	FALSE	HETLOSS	PASS
659_bTo_pair	YTHDF1	20	63195429	63216234	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	YTHDF2	1	28736621	28769775	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	YTHDF3	8	63168553	63212786	FALSE	550	-0.186881774239562	48	60208949	67746087	0.365165917639896	3	NA	0.365165917639896	3	NA	7537138	NA	33	12	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	YWHAB	20	44885676	44908532	FALSE	1210	-0.476296426145969	34	43513997	45110019	NA	2	NA	NA	2	NA	1596022	NA	26	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	YWHAE	17	1344272	1400378	FALSE	997	1.58195803375454	91	1345513	1354319	0.364342740527346	19	NA	0.364342740527346	19	NA	8806	NA	1	24	3	TRUE	AMP	PASS
659_bTo_pair	YWHAG	7	76326794	76359031	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	YWHAH	22	31944461	31957603	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	4	0	FALSE	CNLOH	PASS
659_bTo_pair	YWHAQ	2	9583972	9631014	FALSE	91	-0.381423766031593	35	6840661	15937904	1	2	1	1	2	1	9097243	1	35	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	YWHAZ	8	100916525	100953388	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	6	0	FALSE	GAIN	PASS
659_bTo_pair	YY1	14	100238298	100282792	FALSE	876	-0.546199181806584	27	96039535	102050530	1	2	1	1	2	1	6010995	1	30	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	YY1AP1	1	155659443	155689000	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	YY2	23	21855987	21858727	FALSE	1278	-0.021616497728569	55	20155391	23935235	0.328696605851359	4	NA	0.328696605851359	4	NA	3779844	NA	16	5	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	Z82190.2	22	31754899	31956243	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	50	4	FALSE	CNLOH	PASS
659_bTo_pair	Z83844.1	22	37686414	37726503	FALSE	1263	-0.528184158498335	29	36991204	37967644	NA	2	NA	NA	2	NA	976440	NA	31	24	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	Z83844.3	22	37639693	37666932	FALSE	1263	-0.528184158498335	29	36991204	37967644	NA	2	NA	NA	2	NA	976440	NA	31	25	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	Z84488.2	6	116399395	116463696	FALSE	417	-0.520434008170675	29	114058103	117272433	NA	2	NA	NA	2	NA	3214330	NA	20	18	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	Z84492.1	3	50350892	50367923	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	Z98752.3	20	43540171	43569498	FALSE	1210	-0.476296426145969	34	43513997	45110019	NA	2	NA	NA	2	NA	1596022	NA	26	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZACN	17	76071961	76083666	FALSE	1078	-0.524612069500728	27	75784938	76733645	1	2	1	1	2	1	948707	1	36	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZADH2	18	75195108	75209348	FALSE	1112	-0.326031427943483	43	74631210	75288588	0.192136715055622	3	NA	0.192136715055622	3	NA	657378	NA	3	5	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	ZAN	7	100733626	100797797	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	53	9	FALSE	HETLOSS	PASS
659_bTo_pair	ZAP70	2	97713560	97739862	FALSE	129	-0.0788460339292772	54	97162194	97739861	0.311828977193897	4	2	0.311828977193897	4	2	577667	2	6	19	3	FALSE	TETRAPLOID	PASS
659_bTo_pair	ZAR1	4	48490252	48494389	FALSE	282	-0.204234033978701	47	41752697	49032685	0.365165917639896	3	1	0.365165917639896	3	1	7279988	2	31	7	2	FALSE	GAIN	PASS
659_bTo_pair	ZAR1L	13	32303700	32315344	FALSE	828	-0.893717680890687	13	28659152	32311865	0.365165917639896	1	0	0.365165917639896	1	0	3652713	1	17	8	1	TRUE	HETLOSS	PASS
659_bTo_pair	ZBBX	3	167240287	167381346	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	21	5	FALSE	GAIN	PASS
659_bTo_pair	ZBED2	3	111592900	111595443	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	3	0	FALSE	GAIN	PASS
659_bTo_pair	ZBED3	5	77072072	77087323	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZBED4	22	49853842	49890078	FALSE	1271	-0.350898193716427	41	45922979	50285791	0.284729887459054	3	0	0.284729887459054	3	0	4362812	3	30	14	1	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	ZBED5	11	10812074	10858796	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZBED6	1	203795714	203854999	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	30	3	FALSE	DIPLOID	PASS
659_bTo_pair	ZBED6CL	7	150329789	150332721	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZBED8	5	160393148	160400097	FALSE	353	-0.698571741790457	22	157138801	161546576	0.291335969972972	1	0	0.291335969972972	1	0	4407775	1	29	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZBED9	6	28570535	28616212	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	17	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZBP1	20	57603846	57620576	FALSE	1221	-0.44936578355072	34	56249153	58715213	NA	2	NA	NA	2	NA	2466060	NA	27	12	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZBTB1	14	64503712	64533690	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZBTB10	8	80485619	80526265	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	14	0	FALSE	GAIN	PASS
659_bTo_pair	ZBTB11	3	101648889	101677495	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	19	1	FALSE	GAIN	PASS
659_bTo_pair	ZBTB12	6	31899607	31901992	FALSE	381	-0.598136171789118	23	31403696	32192518	0.186356639256811	1	0	0.186356639256811	1	0	788822	1	69	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZBTB14	18	5289019	5297053	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	7	0	FALSE	GAIN	PASS
659_bTo_pair	ZBTB16	11	114059593	114250676	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZBTB17	1	15941869	15976132	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	17	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZBTB18	1	244048939	244057476	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZBTB2	6	151364117	151391548	FALSE	437	2.35509686410102	111	151364186	151391463	0.364342740527346	35	NA	0.364342740527346	35	NA	27277	NA	1	13	2	FALSE	AMP	PASS
659_bTo_pair	ZBTB20	3	114314501	115147271	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	10	0	FALSE	GAIN	PASS
659_bTo_pair	ZBTB21	21	41986831	42010387	FALSE	1234	-0.544212636077936	27	41740855	44141314	1	2	1	1	2	1	2400459	1	31	13	2	FALSE	DIPLOID	PASS
659_bTo_pair	ZBTB22	6	33314406	33317942	FALSE	389	-0.565050845620731	23	33163789	33316917	0.186356639256811	1	0	0.186356639256811	1	0	153128	1	13	8	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZBTB24	6	109462594	109483237	FALSE	413	-0.500196946840681	30	106186680	111601210	1	2	1	1	2	1	5414530	1	40	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZBTB25	14	64449106	64505213	FALSE	860	-0.378718032286296	35	45204169	65061226	1	2	1	1	2	1	19857057	1	117	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZBTB26	9	122915566	122931500	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZBTB3	11	62748319	62754188	FALSE	702	-0.306956547399405	43	62534049	64357099	0.192136715055622	3	NA	0.192136715055622	3	NA	1823050	NA	73	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ZBTB32	19	35704527	35717038	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	9	0	TRUE	HETLOSS	PASS
659_bTo_pair	ZBTB33	23	120250752	120258398	FALSE	1328	0.070674287613007	59	119603543	121049335	0.308533751035793	5	NA	0.308533751035793	5	NA	1445792	NA	34	9	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZBTB34	9	126860665	126885878	FALSE	619	-0.820686000870706	14	125203036	127778681	0.365165917639896	1	0	0.365165917639896	1	0	2575645	1	23	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZBTB37	1	173868082	173903549	FALSE	55	-0.460787619767229	30	162790761	179094120	1	2	1	1	2	1	16303359	1	98	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZBTB38	3	141324213	141449792	FALSE	246	-0.322519280750539	43	139344000	142447976	0.192136715055622	3	NA	0.192136715055622	3	NA	3103976	NA	19	14	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	ZBTB39	12	56998834	57006446	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZBTB4	17	7459366	7484263	FALSE	1000	-0.750226164220686	19	7324407	7655594	0.365165917639896	1	0	0.365165917639896	1	0	331187	1	31	19	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZBTB40	1	22428838	22531157	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	22	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZBTB41	1	197153680	197200542	FALSE	60	-0.443336911293225	30	196228264	201209660	1	2	1	1	2	1	4981396	1	29	16	2	FALSE	DIPLOID	PASS
659_bTo_pair	ZBTB42	14	104800596	104804712	FALSE	884	1.44902421656918	90	104769372	104802386	0.364342740527346	17	NA	0.364342740527346	17	NA	33014	NA	2	5	1	FALSE	AMP	PASS
659_bTo_pair	ZBTB43	9	126805006	126838210	FALSE	619	-0.820686000870706	14	125203036	127778681	0.365165917639896	1	0	0.365165917639896	1	0	2575645	1	23	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZBTB44	11	130226677	130314908	FALSE	734	-0.516486951202814	27	128842412	134387591	1	2	1	1	2	1	5545179	1	27	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZBTB45	19	58513530	58538911	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	7	0	FALSE	GAIN	PASS
659_bTo_pair	ZBTB46	20	63743666	63831244	FALSE	1225	-0.32421417626258	43	63733191	64273510	0.192136715055622	3	NA	0.192136715055622	3	NA	540319	NA	22	9	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	ZBTB47	3	42653684	42665854	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZBTB48	1	6580001	6589280	FALSE	2	-0.541061143676376	27	1484986	11095853	1	2	1	1	2	1	9610867	1	104	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZBTB49	4	4290251	4321786	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	13	1	FALSE	GAIN	PASS
659_bTo_pair	ZBTB5	9	37438114	37465399	FALSE	594	0.68076596901961	72	36840597	37441713	0.364342740527346	9	NA	0.364342740527346	9	NA	601116	NA	4	8	0	TRUE	INDETERMINATE	PASS
659_bTo_pair	ZBTB6	9	122908056	122913330	FALSE	617	-0.816410525429259	14	121822862	125143391	0.365165917639896	1	0	0.365165917639896	1	0	3320529	1	42	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZBTB7A	19	4044364	4066945	FALSE	1123	1.2973896190232	86	4043292	4164654	0.364342740527346	15	NA	0.364342740527346	15	NA	121362	NA	3	23	0	FALSE	AMP	PASS
659_bTo_pair	ZBTB7B	1	155002630	155018522	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZBTB7C	18	48026673	48410752	FALSE	1102	1.52392983085885	90	47835851	48029458	0.364342740527346	18	NA	0.364342740527346	18	NA	193607	NA	2	11	2	TRUE	AMP	PASS
659_bTo_pair	ZBTB8A	1	32539427	32605939	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZBTB8B	1	32465069	32496686	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZBTB8OS	1	32600172	32650903	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	9	2	FALSE	DIPLOID	PASS
659_bTo_pair	ZBTB9	6	33453970	33457548	FALSE	391	-0.499783837646083	34	33391964	35241176	NA	2	NA	NA	2	NA	1849212	NA	26	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZC2HC1A	8	78666047	78719765	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	9	1	FALSE	GAIN	PASS
659_bTo_pair	ZC2HC1B	6	143864436	143938356	FALSE	431	-0.504239059693729	30	143136912	149638436	1	2	1	1	2	1	6501524	1	29	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZC2HC1C	14	75064170	75079987	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZC3H10	12	56118159	56127514	FALSE	778	-0.565690679417146	26	56104722	57078644	NA	2	NA	NA	2	NA	973922	NA	40	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZC3H11A	1	203795654	203854999	FALSE	64	-0.519081684257076	27	202123123	204410853	1	2	1	1	2	1	2287730	1	35	30	3	FALSE	DIPLOID	PASS
659_bTo_pair	ZC3H12A	1	37474552	37484379	FALSE	13	2.20846410741694	108	37475735	37483592	0.364342740527346	31	NA	0.364342740527346	31	NA	7857	NA	1	10	0	FALSE	AMP	PASS
659_bTo_pair	ZC3H12B	23	65366638	65507887	FALSE	1307	-0.0742378241560309	55	64268602	66615968	0.328696605851359	4	NA	0.328696605851359	4	NA	2347366	NA	8	13	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ZC3H12C	11	110093361	110171841	FALSE	723	-0.542672588801529	29	108383083	111912852	NA	2	NA	NA	2	NA	3529769	NA	24	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZC3H12D	6	149446795	149485061	FALSE	431	-0.504239059693729	30	143136912	149638436	1	2	1	1	2	1	6501524	1	29	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZC3H13	13	45954465	46052759	FALSE	833	-0.777354840357568	17	40729371	48258810	0.365165917639896	1	0	0.365165917639896	1	0	7529439	1	45	30	2	FALSE	HETLOSS	PASS
659_bTo_pair	ZC3H14	14	88562909	88627596	FALSE	870	-0.471399657488227	30	81180359	92000019	1	2	1	1	2	1	10819660	1	29	30	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZC3H15	2	186486156	186509363	FALSE	159	-0.50094907723407	34	185815441	189771912	NA	2	NA	NA	2	NA	3956471	NA	17	10	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZC3H18	16	88570381	88631966	FALSE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	22	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZC3H3	8	143437655	143541453	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	17	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZC3H4	19	47064187	47113752	FALSE	1187	-0.64296711085636	26	47021158	48297657	NA	2	NA	NA	2	NA	1276499	NA	31	23	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZC3H6	2	112275594	112340063	FALSE	138	-0.423459519967032	34	112060069	113201423	NA	2	NA	NA	2	NA	1141354	NA	21	20	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZC3H7A	16	11750586	11797267	FALSE	954	-0.618769947650953	26	11345676	11941160	NA	2	NA	NA	2	NA	595484	NA	9	23	3	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZC3H7B	22	41301522	41360147	FALSE	1269	-0.443951758803067	34	41205309	42514754	NA	2	NA	NA	2	NA	1309445	NA	31	28	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZC3H8	2	112211525	112255136	FALSE	138	-0.423459519967032	34	112060069	113201423	NA	2	NA	NA	2	NA	1141354	NA	21	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZC3HAV1	7	139043520	139109719	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	19	5	FALSE	DIPLOID	PASS
659_bTo_pair	ZC3HAV1L	7	139025706	139036029	FALSE	498	-0.486450002581139	30	132133074	140704919	1	2	1	1	2	1	8571845	1	51	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZC3HC1	7	130018286	130051451	FALSE	494	-0.536776174448359	29	129225418	130685270	NA	2	NA	NA	2	NA	1459852	NA	17	12	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZC4H2	23	64915802	65034713	FALSE	1307	-0.0742378241560309	55	64268602	66615968	0.328696605851359	4	NA	0.328696605851359	4	NA	2347366	NA	8	5	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ZCCHC10	5	132996985	133026604	FALSE	335	-0.726026808549493	19	132658162	135941467	0.365165917639896	1	0	0.365165917639896	1	0	3283305	1	41	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZCCHC12	23	118823790	118826968	FALSE	1326	0.081501992784242	59	111246621	119452040	0.308533751035793	5	NA	0.308533751035793	5	NA	8205419	NA	28	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZCCHC13	23	74304190	74305031	FALSE	1317	0.217996879888221	62	71533297	76176924	0.364342740527346	5	NA	0.364342740527346	5	NA	4643627	NA	35	3	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZCCHC14	16	87406246	87492045	FALSE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	19	2	FALSE	HETLOSS	PASS
659_bTo_pair	ZCCHC17	1	31296982	31364953	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZCCHC18	23	104112131	104115846	FALSE	1323	0.0825793664827937	59	103630381	110792149	0.308533751035793	5	NA	0.308533751035793	5	NA	7161768	NA	48	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZCCHC2	18	62523007	62587709	FALSE	1109	-0.86662286323735	13	60372339	62975524	0.365165917639896	1	0	0.365165917639896	1	0	2603185	1	8	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZCCHC24	10	79382325	79445627	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	4	0	FALSE	CNLOH	PASS
659_bTo_pair	ZCCHC3	20	296968	300321	FALSE	1195	-0.60512265366003	23	87765	1537211	0.186356639256811	1	0	0.186356639256811	1	0	1449446	1	33	5	2	FALSE	HETLOSS	PASS
659_bTo_pair	ZCCHC4	4	25312785	25370383	FALSE	278	-0.217595572850614	44	20704713	38137253	0.345317016959666	3	1	0.345317016959666	3	1	17432540	2	29	14	1	FALSE	GAIN	PASS
659_bTo_pair	ZCCHC7	9	37120539	37358149	FALSE	594	0.68076596901961	72	36840597	37441713	0.364342740527346	9	NA	0.364342740527346	9	NA	601116	NA	4	12	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	ZCCHC8	12	122471600	122501073	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZCCHC9	5	81301590	81313297	FALSE	327	-0.729214269739125	19	80961009	86619409	0.365165917639896	1	0	0.365165917639896	1	0	5658400	1	14	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZCRB1	12	42312078	42326118	FALSE	764	-0.478463991093384	34	40959192	45805435	NA	2	NA	NA	2	NA	4846243	NA	16	7	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZCWPW1	7	100400826	100428992	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZCWPW2	3	28349146	28538122	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZDBF2	2	206274663	206314438	FALSE	168	-0.499602545595775	30	203936898	208231285	1	2	1	1	2	1	4294387	1	25	30	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZDHHC1	16	67394152	67416833	FALSE	976	-0.467350965811123	34	67110264	67538977	NA	2	NA	NA	2	NA	428713	NA	24	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZDHHC11	5	795606	850986	FALSE	308	-0.255094097331532	44	92297	1246091	0.345317016959666	3	1	0.345317016959666	3	1	1153794	2	18	12	2	FALSE	GAIN	PASS
659_bTo_pair	ZDHHC11B	5	710360	766952	FALSE	308	-0.255094097331532	44	92297	1246091	0.345317016959666	3	1	0.345317016959666	3	1	1153794	2	18	11	2	FALSE	GAIN	PASS
659_bTo_pair	ZDHHC12	9	128720869	128724127	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZDHHC13	11	19117099	19176422	FALSE	687	-0.402818673238029	35	14364395	22377508	1	2	1	1	2	1	8013113	1	56	17	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZDHHC14	6	157381133	157678146	FALSE	442	-0.485239870020868	34	157293045	158767513	NA	2	NA	NA	2	NA	1474468	NA	11	11	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZDHHC15	23	75368427	75523502	FALSE	1317	0.217996879888221	62	71533297	76176924	0.364342740527346	5	NA	0.364342740527346	5	NA	4643627	NA	35	11	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZDHHC16	10	97446131	97457370	FALSE	664	-0.371799025630062	36	96955124	97864220	0.365165917639896	2	0	0.365165917639896	2	0	909096	2	23	11	0	FALSE	CNLOH	PASS
659_bTo_pair	ZDHHC17	12	76763588	76853696	FALSE	793	-0.510041181295141	29	76355979	85286979	NA	2	NA	NA	2	NA	8931000	NA	22	17	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZDHHC18	1	26826710	26857602	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZDHHC19	3	196197449	196211437	FALSE	271	-0.194588974812627	47	196198492	198169864	0.365165917639896	3	1	0.365165917639896	3	1	1971372	2	29	8	0	FALSE	GAIN	PASS
659_bTo_pair	ZDHHC2	8	17156029	17224799	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	12	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZDHHC20	13	21372573	21459370	FALSE	821	-0.916323932116457	13	21147296	21604174	0.365165917639896	1	0	0.365165917639896	1	0	456878	1	5	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZDHHC21	9	14611071	14693471	FALSE	581	-0.746183084602222	19	10618009	19786745	0.365165917639896	1	0	0.365165917639896	1	0	9168736	1	24	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZDHHC22	14	77131270	77142734	FALSE	868	-0.463936859345587	30	75053655	80916497	1	2	1	1	2	1	5862842	1	40	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZDHHC23	3	113947901	113965401	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	9	0	FALSE	GAIN	PASS
659_bTo_pair	ZDHHC24	11	66520637	66546238	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	17	2	FALSE	GAIN	PASS
659_bTo_pair	ZDHHC3	3	44915257	44976185	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZDHHC4	7	6577434	6589374	FALSE	456	-0.240618790532325	45	6028682	12688782	0.279823559258657	3	0	0.279823559258657	3	0	6660100	3	32	7	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	ZDHHC5	11	57667747	57701187	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	14	0	FALSE	GAIN	PASS
659_bTo_pair	ZDHHC6	10	112424428	112446917	FALSE	671	-0.443752838916331	34	110781853	112815244	NA	2	NA	NA	2	NA	2033391	NA	10	15	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZDHHC7	16	84974181	85011535	FALSE	987	-0.578642888038652	23	81999201	85806436	0.186356639256811	1	0	0.186356639256811	1	0	3807235	1	31	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZDHHC8	22	20129456	20148007	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	16	0	FALSE	CNLOH	PASS
659_bTo_pair	ZDHHC9	23	129803288	129843909	FALSE	1333	-0.260466887002759	46	126819804	129920771	0.298322295679939	3	NA	0.298322295679939	3	NA	3100967	NA	9	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ZEB1	10	31318495	31529814	FALSE	638	-0.441875687518437	32	27112127	31908266	0.365165917639896	2	0	0.365165917639896	2	0	4796139	2	18	20	0	FALSE	CNLOH	PASS
659_bTo_pair	ZEB2	2	144364364	144524583	FALSE	148	1.73439744586955	97	144389461	144517341	0.364342740527346	22	NA	0.364342740527346	22	NA	127880	NA	1	19	0	FALSE	AMP	PASS
659_bTo_pair	ZER1	9	128729786	128772414	FALSE	621	-0.806123948866091	14	127802945	130703661	0.365165917639896	1	0	0.365165917639896	1	0	2900716	1	63	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZFAND1	8	81701334	81732903	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	9	0	FALSE	GAIN	PASS
659_bTo_pair	ZFAND2A	7	1152071	1160759	FALSE	450	-0.329551508654045	40	193185	2379492	0.308149309490068	3	1	0.308149309490068	3	1	2186307	2	26	4	0	FALSE	GAIN	PASS
659_bTo_pair	ZFAND2B	2	219195237	219209651	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZFAND3	6	37819499	38154624	FALSE	397	-0.509151429367598	27	37213022	41687167	1	2	1	1	2	1	4474145	1	33	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZFAND4	10	45615501	45672780	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	14	1	FALSE	CNLOH	PASS
659_bTo_pair	ZFAND5	9	72351425	72365235	FALSE	596	-0.532281405103762	27	67897631	77647708	1	2	1	1	2	1	9750077	1	41	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZFAND6	15	80059568	80138393	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	5	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZFAT	8	134477788	134713049	FALSE	565	-0.282741903777565	44	129748604	134610527	0.345317016959666	3	1	0.345317016959666	3	1	4861923	2	18	24	2	TRUE	GAIN	PASS
659_bTo_pair	ZFC3H1	12	71609472	71667725	FALSE	792	-0.349776929755415	43	71610399	76348235	0.192136715055622	3	NA	0.192136715055622	3	NA	4737836	NA	18	42	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	ZFHX2	14	23520855	23556192	FALSE	852	-0.366187498217605	35	23323005	35317294	1	2	1	1	2	1	11994289	1	90	34	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZFHX3	16	72782885	73891871	TRUE	984	1.83311950434959	100	72783092	73093621	0.364342740527346	23	NA	0.364342740527346	23	NA	310529	NA	1	81	3	TRUE	AMP	PASS
659_bTo_pair	ZFHX4	8	76681219	76867285	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	46	3	FALSE	GAIN	PASS
659_bTo_pair	ZFP1	16	75148492	75172236	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZFP14	19	36334453	36379199	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZFP2	5	178895894	178933212	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZFP28	19	56538948	56556810	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	15	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZFP3	17	5078248	5096374	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZFP30	19	37613749	37692337	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZFP36	19	39406813	39409412	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZFP36L1	14	68787660	68796253	FALSE	863	1.14186385010033	83	67819799	68796162	0.364342740527346	13	NA	0.364342740527346	13	NA	976363	NA	2	6	0	FALSE	AMP	PASS
659_bTo_pair	ZFP36L2	2	43222402	43226609	FALSE	106	-0.392858868113437	39	42335725	46184779	NA	2	NA	NA	2	NA	3849054	NA	22	7	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZFP37	9	113038380	113056759	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZFP41	8	143246821	143262705	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	3	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZFP42	4	187995771	188005050	FALSE	307	-0.829378869737769	16	188002775	190026761	0.365165917639896	1	0	0.365165917639896	1	0	2023986	1	5	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZFP57	6	29672392	29681110	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZFP62	5	180847611	180861285	FALSE	363	-0.662769973757303	22	180739384	181260807	0.291335969972972	1	0	0.291335969972972	1	0	521423	1	12	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZFP64	20	52051663	52204308	FALSE	1218	-0.459978768286429	34	50587211	53185754	NA	2	NA	NA	2	NA	2598543	NA	12	18	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZFP69	1	40477215	40496343	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZFP69B	1	40450102	40463718	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZFP82	19	36383120	36418656	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZFP90	16	68530090	68576072	FALSE	979	-0.429457644119204	34	67645299	68698317	NA	2	NA	NA	2	NA	1053018	NA	33	11	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZFP91	11	58579111	58621042	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	14	0	FALSE	GAIN	PASS
659_bTo_pair	ZFP91-CNTF	11	58579172	58624639	FALSE	698	-0.202815682263077	47	56642289	59204703	0.365165917639896	3	1	0.365165917639896	3	1	2562414	2	54	18	0	FALSE	GAIN	PASS
659_bTo_pair	ZFP92	23	153418322	153426481	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	7	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	ZFPL1	11	65084210	65088400	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	8	0	FALSE	GAIN	PASS
659_bTo_pair	ZFPM1	16	88453317	88537016	FALSE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	18	3	FALSE	HETLOSS	PASS
659_bTo_pair	ZFPM2	8	104590733	105804532	FALSE	561	-0.210477706860293	47	102652438	116770243	0.365165917639896	3	1	0.365165917639896	3	1	14117805	2	32	17	0	FALSE	GAIN	PASS
659_bTo_pair	ZFR	5	32354350	32444761	FALSE	312	-0.206081392785099	47	24487677	35857105	0.365165917639896	3	1	0.365165917639896	3	1	11369428	2	27	25	0	FALSE	GAIN	PASS
659_bTo_pair	ZFR2	19	3804024	3869032	FALSE	1122	-0.653400653967241	21	3157829	4037863	0.140309795179477	0	0	0.140309795179477	0	0	880034	0	27	26	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZFX	23	24149173	24216255	FALSE	1279	0.732858679270306	74	23938620	24365274	0.364342740527346	9	NA	0.364342740527346	9	NA	426654	NA	4	13	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	ZFYVE1	14	72969451	73027212	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZFYVE16	5	80408013	80479350	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	27	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZFYVE19	15	40807086	40815084	FALSE	892	-0.721747191704039	17	38362251	40955715	0.365165917639896	1	0	0.365165917639896	1	0	2593464	1	38	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZFYVE21	14	103715730	103733668	FALSE	883	-0.69016701050987	21	103712930	104759455	0.140309795179477	0	0	0.140309795179477	0	0	1046525	0	14	8	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZFYVE26	14	67727374	67816590	FALSE	862	-0.496151350288089	31	65561584	67816009	1	2	1	1	2	1	2254425	1	17	53	2	FALSE	DIPLOID	PASS
659_bTo_pair	ZFYVE27	10	97737121	97760907	FALSE	664	-0.371799025630062	36	96955124	97864220	0.365165917639896	2	0	0.365165917639896	2	0	909096	2	23	12	3	FALSE	CNLOH	PASS
659_bTo_pair	ZFYVE28	4	2269582	2418663	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	20	1	FALSE	GAIN	PASS
659_bTo_pair	ZFYVE9	1	52142094	52346686	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	25	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZG16	16	29778240	29782973	FALSE	965	-0.735005669796309	19	28989573	29982749	0.365165917639896	1	0	0.365165917639896	1	0	993176	1	25	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZG16B	16	2830169	2839585	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZGLP1	19	10304803	10309880	FALSE	1139	-0.718742930681428	18	10252235	10467338	0.180216333675297	0	0	0.180216333675297	0	0	215103	0	13	5	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZGPAT	20	63707465	63736142	FALSE	1224	1.85155133976983	100	63698473	63709121	0.364342740527346	24	NA	0.364342740527346	24	NA	10648	NA	5	12	0	TRUE	AMP	PASS
659_bTo_pair	ZGRF1	4	112539333	112636995	FALSE	294	-0.458167217134737	30	105369750	122620756	1	2	1	1	2	1	17251006	1	70	41	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZHX1	8	123248451	123275541	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	12	0	FALSE	GAIN	PASS
659_bTo_pair	ZHX1-C8orf76	8	123226189	123274284	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	18	0	FALSE	GAIN	PASS
659_bTo_pair	ZHX2	8	122781394	122974512	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	10	1	FALSE	GAIN	PASS
659_bTo_pair	ZHX3	20	41178448	41317672	FALSE	1207	-0.45870607109039	34	41137791	42067755	NA	2	NA	NA	2	NA	929964	NA	5	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZIC1	3	147393422	147510293	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	12	1	FALSE	GAIN	PASS
659_bTo_pair	ZIC2	13	99981772	99986773	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	7	0	FALSE	CNLOH	PASS
659_bTo_pair	ZIC3	23	137566142	137577691	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	7	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ZIC4	3	147386046	147406860	FALSE	248	-0.333929176840567	40	142664265	156553707	0.308149309490068	3	1	0.308149309490068	3	1	13889442	2	64	9	1	FALSE	GAIN	PASS
659_bTo_pair	ZIC5	13	99962964	99971909	FALSE	838	-0.408391323893994	36	72783540	101706836	0.365165917639896	2	0	0.365165917639896	2	0	28923296	2	57	8	0	FALSE	CNLOH	PASS
659_bTo_pair	ZIK1	19	57578456	57593777	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	9	0	FALSE	GAIN	PASS
659_bTo_pair	ZIM2	19	56774547	56840729	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	30	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZIM3	19	57134096	57145202	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	8	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZKSCAN1	7	100015572	100041689	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZKSCAN2	16	25236001	25257931	FALSE	960	-0.449512584299377	34	23658521	27234165	NA	2	NA	NA	2	NA	3575644	NA	16	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZKSCAN3	6	28349914	28369177	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	9	2	FALSE	DIPLOID	PASS
659_bTo_pair	ZKSCAN4	6	28244623	28252224	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZKSCAN5	7	99504651	99534700	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZKSCAN7	3	44555193	44594173	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZKSCAN8	6	28141910	28159472	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZMAT1	23	101882288	101932031	FALSE	1321	0.439394403838451	66	101391440	103377786	0.364342740527346	7	NA	0.364342740527346	7	NA	1986346	NA	34	10	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	ZMAT2	5	140698680	140706676	FALSE	338	-0.94381653799891	11	138951867	140786469	0.289956079954009	0	0	0.289956079954009	0	0	1834602	0	38	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZMAT3	3	179017223	179072279	FALSE	251	-0.14178197424987	49	161346112	179067740	0.365165917639896	3	1	0.365165917639896	3	1	17721628	2	44	6	0	FALSE	GAIN	PASS
659_bTo_pair	ZMAT4	8	40530590	40897833	FALSE	536	-0.812766686991614	14	38512585	41896345	0.365165917639896	1	0	0.365165917639896	1	0	3383760	1	19	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZMAT5	22	29730956	29767011	FALSE	1261	-0.491824846813609	32	29720478	36877853	0.365165917639896	2	0	0.365165917639896	2	0	7157375	2	76	5	0	FALSE	CNLOH	PASS
659_bTo_pair	ZMIZ1	10	79069035	79316528	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	27	2	FALSE	CNLOH	PASS
659_bTo_pair	ZMIZ2	7	44748581	44769881	FALSE	463	-0.277011935221636	44	41966455	45111642	0.345317016959666	3	1	0.345317016959666	3	1	3145187	2	36	22	1	FALSE	GAIN	PASS
659_bTo_pair	ZMPSTE24	1	40258107	40294184	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZMYM1	1	35032172	35115859	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	18	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZMYM2	13	19958670	20091829	FALSE	819	-0.883807164728579	13	19173884	20902691	0.365165917639896	1	0	0.365165917639896	1	0	1728807	1	14	29	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZMYM3	23	71239624	71255146	FALSE	1314	1.60568530066658	93	71113596	71254970	0.364342740527346	19	NA	0.364342740527346	19	NA	141374	NA	4	38	0	FALSE	AMP	PASS
659_bTo_pair	ZMYM4	1	35268967	35422058	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	33	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZMYM5	13	19823482	19863636	FALSE	819	-0.883807164728579	13	19173884	20902691	0.365165917639896	1	0	0.365165917639896	1	0	1728807	1	14	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZMYM6	1	34986165	35031968	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	23	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZMYND10	3	50341110	50346852	FALSE	222	-0.808104321993364	16	49909130	52399623	0.365165917639896	1	0	0.365165917639896	1	0	2490493	1	58	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZMYND11	10	134465	254637	FALSE	634	-0.463953372169778	32	47268	7824532	0.365165917639896	2	0	0.365165917639896	2	0	7777264	2	40	17	0	FALSE	CNLOH	PASS
659_bTo_pair	ZMYND12	1	42430329	42456267	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZMYND15	17	4740015	4746119	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	15	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZMYND19	9	137582079	137590490	FALSE	633	-0.768373489977658	17	136946832	138220915	0.365165917639896	1	0	0.365165917639896	1	0	1274083	1	47	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZMYND8	20	47209214	47356889	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	29	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF10	12	133130575	133159465	FALSE	818	-0.324030199616913	43	132687628	133234369	0.192136715055622	3	NA	0.192136715055622	3	NA	546741	NA	14	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ZNF100	19	21722766	21767628	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF101	19	19668796	19683509	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	8	1	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF106	15	42412823	42491141	FALSE	898	-0.892191685906218	12	42081573	42681446	0.365165917639896	1	0	0.365165917639896	1	0	599873	1	13	36	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF107	7	64666083	64711582	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF112	19	44326555	44367217	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF114	19	48270102	48287608	FALSE	1187	-0.64296711085636	26	47021158	48297657	NA	2	NA	NA	2	NA	1276499	NA	31	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZNF117	7	64971776	65006684	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	13	3	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF12	7	6688433	6706923	FALSE	456	-0.240618790532325	45	6028682	12688782	0.279823559258657	3	0	0.279823559258657	3	0	6660100	3	32	11	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	ZNF121	19	9560353	9584533	FALSE	1136	-0.657304673205362	21	8981156	10119920	0.140309795179477	0	0	0.140309795179477	0	0	1138764	0	32	6	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF124	1	247121975	247172016	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF131	5	43065176	43192021	FALSE	316	-0.143574193475256	49	39021030	43704252	0.365165917639896	3	1	0.365165917639896	3	1	4683222	2	28	11	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF132	19	58432814	58440222	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	10	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF133	20	18288283	18316996	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF134	19	57614233	57624723	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	7	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF135	19	58059239	58086310	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	15	1	FALSE	GAIN	PASS
659_bTo_pair	ZNF136	19	12163064	12189881	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF138	7	64794388	64833681	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF14	19	19710471	19733097	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	6	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF140	12	133079838	133107544	FALSE	818	-0.324030199616913	43	132687628	133234369	0.192136715055622	3	NA	0.192136715055622	3	NA	546741	NA	14	8	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	ZNF141	4	337814	384864	FALSE	272	-0.300029378244858	40	85877	1745020	0.308149309490068	3	1	0.308149309490068	3	1	1659143	2	29	6	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF142	2	218637916	218659655	FALSE	176	-0.608591976990034	23	214814694	219577215	0.186356639256811	1	0	0.186356639256811	1	0	4762521	1	69	21	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF143	11	9460319	9528524	FALSE	685	-0.380117587142104	35	8392759	14265572	1	2	1	1	2	1	5872813	1	39	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF146	19	36214602	36238774	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF148	3	125225561	125375354	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	14	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF154	19	57697367	57709194	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	7	1	FALSE	GAIN	PASS
659_bTo_pair	ZNF155	19	43967862	43998325	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	10	2	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF157	23	47370583	47414305	FALSE	1294	0.117878311449899	59	47198859	47467488	0.308533751035793	5	NA	0.308533751035793	5	NA	268629	NA	5	8	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF16	8	144930358	144950888	FALSE	569	-0.29739638799535	43	144518163	145054121	0.192136715055622	3	NA	0.192136715055622	3	NA	535958	NA	13	9	3	FALSE	GAIN (many states)	PASS
659_bTo_pair	ZNF160	19	53066606	53103436	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	10	3	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF165	6	28080975	28089563	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF169	9	94259311	94301454	FALSE	606	-0.547644280946133	27	91214370	95094057	1	2	1	1	2	1	3879687	1	31	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF17	19	57411163	57421939	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	11	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF174	16	3401235	3409370	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF175	19	51571298	51592508	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF177	19	9363020	9382617	FALSE	1136	-0.657304673205362	21	8981156	10119920	0.140309795179477	0	0	0.140309795179477	0	0	1138764	0	32	9	4	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF18	17	11977439	11997510	FALSE	1007	-0.622785267243661	26	10825621	11992799	NA	2	NA	NA	2	NA	1167178	NA	4	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZNF180	19	44474428	44500524	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF181	19	34734155	34745378	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF182	23	47974851	48003978	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	10	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF184	6	27450743	27473118	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF185	23	152914442	152973480	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	24	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	ZNF189	9	101398873	101410660	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF19	16	71464555	71565089	FALSE	983	-0.428709389755029	30	71178941	72171154	1	2	1	1	2	1	992213	1	22	13	2	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF195	11	3339261	3379222	FALSE	681	-0.610288846725773	23	2160014	6239684	0.186356639256811	1	0	0.186356639256811	1	0	4079670	1	108	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF197	3	44584888	44648471	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF2	2	95165432	95184317	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF20	19	12092843	12140407	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	16	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF200	16	3222325	3236221	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF202	11	123724177	123741675	FALSE	730	-0.523443910793822	27	119312644	125624545	1	2	1	1	2	1	6311901	1	72	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF205	16	3112560	3120517	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF207	17	32350117	32381886	FALSE	1022	-0.670211431189836	22	32030679	35026358	0.291335969972972	1	0	0.291335969972972	1	0	2995679	1	23	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF208	19	21932958	22010949	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	6	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF211	19	57630395	57642779	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	11	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF212	7	149239651	149255609	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF213	16	3129777	3142805	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF214	11	6999318	7020368	FALSE	683	-0.403180715137318	35	6615199	8138345	1	2	1	1	2	1	1523146	1	28	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF215	11	6926404	7001004	FALSE	683	-0.403180715137318	35	6615199	8138345	1	2	1	1	2	1	1523146	1	28	13	2	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF217	20	53567065	53609907	FALSE	1219	1.86887273600527	100	53253696	53944986	0.364342740527346	24	NA	0.364342740527346	24	NA	691290	NA	3	23	0	FALSE	AMP	PASS
659_bTo_pair	ZNF219	14	21090046	21104722	FALSE	848	-0.478347725503313	30	18601269	21522179	1	2	1	1	2	1	2920910	1	62	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF22	10	45000475	45005326	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	7	1	FALSE	CNLOH	PASS
659_bTo_pair	ZNF221	19	43951223	43967709	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF222	19	44025342	44033112	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF223	19	44051367	44067991	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	9	2	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF224	19	44094339	44109886	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	11	2	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF225	19	44112181	44134816	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF226	19	44165073	44178381	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF227	19	44207547	44237268	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF229	19	44417519	44448578	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF23	16	71447597	71463095	FALSE	983	-0.428709389755029	30	71178941	72171154	1	2	1	1	2	1	992213	1	22	9	2	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF230	19	44002948	44013926	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	8	3	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF232	17	5105541	5123116	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF233	19	44259880	44275317	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF234	19	44141557	44160309	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	10	2	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF235	19	44228729	44305046	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	32	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF236	18	76822607	76970727	FALSE	1113	-0.883471952658051	12	75410842	80247341	0.365165917639896	1	0	0.365165917639896	1	0	4836499	1	17	36	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF239	10	43556344	43574618	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	9	2	FALSE	CNLOH	PASS
659_bTo_pair	ZNF24	18	35332212	35345482	FALSE	1095	-0.699288883997088	20	33734323	36718652	0.365165917639896	1	0	0.365165917639896	1	0	2984329	1	17	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF248	10	37776526	37858106	FALSE	640	-0.421497241268382	32	32269100	43094667	0.365165917639896	2	0	0.365165917639896	2	0	10825567	2	20	12	0	FALSE	CNLOH	PASS
659_bTo_pair	ZNF25	10	37949572	37976633	FALSE	640	-0.421497241268382	32	32269100	43094667	0.365165917639896	2	0	0.365165917639896	2	0	10825567	2	20	10	0	FALSE	CNLOH	PASS
659_bTo_pair	ZNF250	8	144876497	144902168	FALSE	569	-0.29739638799535	43	144518163	145054121	0.192136715055622	3	NA	0.192136715055622	3	NA	535958	NA	13	10	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ZNF251	8	144720907	144756417	FALSE	569	-0.29739638799535	43	144518163	145054121	0.192136715055622	3	NA	0.192136715055622	3	NA	535958	NA	13	10	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ZNF253	19	19865886	19894674	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	4	1	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF254	19	24033405	24129961	FALSE	1163	-0.446590628984043	34	23373705	29714877	NA	2	NA	NA	2	NA	6341172	NA	10	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZNF256	19	57940833	57947675	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	9	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF257	19	22052452	22091480	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF26	12	132986365	133032952	FALSE	818	-0.324030199616913	43	132687628	133234369	0.192136715055622	3	NA	0.192136715055622	3	NA	546741	NA	14	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ZNF260	19	36510695	36528660	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	4	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF263	16	3263800	3301401	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF264	19	57191500	57222846	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	10	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF266	19	9412461	9435578	FALSE	1136	-0.657304673205362	21	8981156	10119920	0.140309795179477	0	0	0.140309795179477	0	0	1138764	0	32	9	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF267	16	31873758	31917357	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF268	12	133181409	133214831	FALSE	818	-0.324030199616913	43	132687628	133234369	0.192136715055622	3	NA	0.192136715055622	3	NA	546741	NA	14	15	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ZNF273	7	64870172	64930966	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF274	19	58183029	58213562	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	11	1	FALSE	GAIN	PASS
659_bTo_pair	ZNF275	23	153334147	153360110	FALSE	1339	0.18650921476123	61	141241518	154515824	0.364342740527346	5	3	0.364342740527346	5	3	13274306	2	110	6	1	FALSE	INDETERMINATE	PASS
659_bTo_pair	ZNF276	16	89720400	89740903	FALSE	991	-0.654420383530572	22	89508463	89733977	0.291335969972972	1	0	0.291335969972972	1	0	225514	1	10	24	0	TRUE	HETLOSS	PASS
659_bTo_pair	ZNF277	7	112206588	112343096	FALSE	488	-0.464127371400283	34	107070260	116559206	NA	2	NA	NA	2	NA	9488946	NA	33	15	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZNF28	19	52797409	52857600	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	10	2	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF280A	22	22513736	22520270	FALSE	1248	-0.440655178794865	34	21923114	22646364	NA	2	NA	NA	2	NA	723250	NA	7	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZNF280B	22	22484421	22509154	FALSE	1248	-0.440655178794865	34	21923114	22646364	NA	2	NA	NA	2	NA	723250	NA	7	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZNF280C	23	130202711	130268899	FALSE	1335	0.100243493544559	59	130066940	134244999	0.308533751035793	5	NA	0.308533751035793	5	NA	4178059	NA	21	20	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF280D	15	56630181	56734086	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	24	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF281	1	200404940	200410056	FALSE	60	-0.443336911293225	30	196228264	201209660	1	2	1	1	2	1	4981396	1	29	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF282	7	149195485	149226248	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF283	19	43827292	43852017	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	6	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF284	19	44072144	44089613	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF285	19	44382298	44401608	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF286A	17	15699577	15720787	FALSE	1009	-0.493836167698037	33	12666172	16027364	0.344071079426502	2	0	0.344071079426502	2	0	3361192	2	21	10	3	FALSE	CNLOH	PASS
659_bTo_pair	ZNF286B	17	18658429	18682262	FALSE	1016	-0.475827016180476	32	18088004	21198615	0.365165917639896	2	0	0.365165917639896	2	0	3110611	2	39	8	0	FALSE	CNLOH	PASS
659_bTo_pair	ZNF287	17	16551387	16569206	FALSE	1012	-0.646922995033775	26	16234077	17184849	NA	2	NA	NA	2	NA	950772	NA	11	12	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZNF292	6	87152833	87264196	FALSE	406	1.66385523338017	96	87152763	87284854	0.364342740527346	20	NA	0.364342740527346	20	NA	132091	NA	2	49	4	FALSE	AMP	PASS
659_bTo_pair	ZNF296	19	45071500	45076588	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF3	7	100064033	100082548	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF30	19	34926903	34945170	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	9	5	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF300	5	150894392	150904983	FALSE	350	-0.819899512516675	16	150444373	153997804	0.365165917639896	1	0	0.365165917639896	1	0	3553431	1	25	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF302	19	34677639	34686397	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	9	2	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF304	19	57351307	57359898	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	10	2	FALSE	GAIN	PASS
659_bTo_pair	ZNF311	6	28994785	29005316	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	12	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF316	7	6637322	6656432	FALSE	456	-0.240618790532325	45	6028682	12688782	0.279823559258657	3	0	0.279823559258657	3	0	6660100	3	32	12	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	ZNF317	19	9140380	9163424	FALSE	1136	-0.657304673205362	21	8981156	10119920	0.140309795179477	0	0	0.140309795179477	0	0	1138764	0	32	11	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF318	6	43307134	43369478	FALSE	401	-0.488899041591966	30	42050554	43770613	1	2	1	1	2	1	1720059	1	45	35	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF319	16	57994668	58000453	FALSE	972	-0.499158643645776	34	57931773	64947842	NA	2	NA	NA	2	NA	7016069	NA	18	7	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZNF32	10	43643859	43648856	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	4	0	FALSE	CNLOH	PASS
659_bTo_pair	ZNF320	19	52863790	52897693	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF322	6	26634383	26659752	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF324	19	58467045	58475436	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	8	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF324B	19	58451604	58457833	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	8	1	FALSE	GAIN	PASS
659_bTo_pair	ZNF326	1	89995112	90035531	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF329	19	58126252	58155110	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	7	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF330	4	141220887	141234697	FALSE	297	-0.42555824537716	30	122912664	141732738	1	2	1	1	2	1	18820074	1	38	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF331	19	53519527	53580269	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF333	19	14689801	14733746	FALSE	1149	-0.413849407553013	38	14562540	15157819	0.164051638880412	2	0	0.164051638880412	2	0	595279	2	17	16	1	FALSE	CNLOH	PASS
659_bTo_pair	ZNF334	20	46499630	46513559	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF335	20	45948653	45972172	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	32	3	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF337	20	25674215	25696841	FALSE	1199	-0.547734265255414	27	10038614	31643526	1	2	1	1	2	1	21604912	1	93	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF33A	10	38010650	38065088	FALSE	640	-0.421497241268382	32	32269100	43094667	0.365165917639896	2	0	0.365165917639896	2	0	10825567	2	20	14	0	FALSE	CNLOH	PASS
659_bTo_pair	ZNF33B	10	42574185	42638568	FALSE	640	-0.421497241268382	32	32269100	43094667	0.365165917639896	2	0	0.365165917639896	2	0	10825567	2	20	12	0	FALSE	CNLOH	PASS
659_bTo_pair	ZNF34	8	144773114	144787345	FALSE	569	-0.29739638799535	43	144518163	145054121	0.192136715055622	3	NA	0.192136715055622	3	NA	535958	NA	13	10	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	ZNF341	20	33731657	33792269	FALSE	1203	-0.511502327551323	27	32839722	37316268	1	2	1	1	2	1	4476546	1	76	20	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF343	20	2481817	2524702	FALSE	1197	-0.605880712191894	23	2207517	9529736	0.186356639256811	1	0	0.186356639256811	1	0	7322219	1	64	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF345	19	36850361	36913029	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF346	5	177022696	177081189	FALSE	358	-0.818248061666494	14	171420190	177079493	0.365165917639896	1	0	0.365165917639896	1	0	5659303	1	45	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF347	19	53124072	53159075	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	10	2	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF35	3	44648727	44660791	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF350	19	51964343	51986856	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF354A	5	178711592	178730702	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF354B	5	178859953	178888122	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF354C	5	179060415	179083537	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF358	19	7515292	7521026	FALSE	1130	-0.690953718254595	21	7440128	7870576	0.140309795179477	0	0	0.140309795179477	0	0	430448	0	25	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF362	1	33256545	33300719	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF365	10	62374192	62670301	FALSE	647	-0.82624597227901	16	62198451	62670209	0.365165917639896	1	0	0.365165917639896	1	0	471758	1	3	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF366	5	72442652	72507727	FALSE	325	-0.67230179999818	20	69094267	80654045	0.365165917639896	1	0	0.365165917639896	1	0	11559778	1	80	11	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF367	9	96385941	96418329	FALSE	608	-0.541405085979946	27	95522076	99069752	1	2	1	1	2	1	3547676	1	31	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF37A	10	38094334	38150293	FALSE	640	-0.421497241268382	32	32269100	43094667	0.365165917639896	2	0	0.365165917639896	2	0	10825567	2	20	10	0	FALSE	CNLOH	PASS
659_bTo_pair	ZNF382	19	36604817	36634113	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF383	19	37217926	37248738	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF384	12	6666477	6689572	FALSE	743	-0.145896859645485	51	6620180	6938488	0.365165917639896	3	NA	0.365165917639896	3	NA	318308	NA	20	13	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ZNF385A	12	54369133	54391298	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF385B	2	179441982	179861505	FALSE	155	-0.524315670340053	27	177420364	181062892	1	2	1	1	2	1	3642528	1	16	13	2	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF385C	17	42025576	42098479	FALSE	1036	-0.764029118419186	19	41624551	42193564	0.365165917639896	1	0	0.365165917639896	1	0	569013	1	25	18	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF385D	3	21412222	22373321	FALSE	205	-0.74448945129198	17	12734760	29944193	0.365165917639896	1	0	0.365165917639896	1	0	17209433	1	63	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF391	6	27374615	27403904	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF394	7	99486519	99500324	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF395	8	28345585	28402701	FALSE	523	-1.08188475411826	8	27469296	29263060	0.342391532111247	0	0	0.342391532111247	0	0	1793764	0	18	11	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF396	18	35366697	35377337	FALSE	1095	-0.699288883997088	20	33734323	36718652	0.365165917639896	1	0	0.365165917639896	1	0	2984329	1	17	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF397	18	35241030	35267133	FALSE	1095	-0.699288883997088	20	33734323	36718652	0.365165917639896	1	0	0.365165917639896	1	0	2984329	1	17	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF398	7	149126416	149182802	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF404	19	43872363	43901385	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF407	18	74597870	75065671	FALSE	1112	-0.326031427943483	43	74631210	75288588	0.192136715055622	3	NA	0.192136715055622	3	NA	657378	NA	3	32	5	FALSE	GAIN (many states)	PASS
659_bTo_pair	ZNF408	11	46700818	46705912	FALSE	694	-0.434821454232884	30	34072030	46751463	1	2	1	1	2	1	12679433	1	54	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF41	23	47445879	47482946	FALSE	1294	0.117878311449899	59	47198859	47467488	0.308533751035793	5	NA	0.308533751035793	5	NA	268629	NA	5	11	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF410	14	73886617	73932511	FALSE	864	-0.443629363777389	30	68874826	75009228	1	2	1	1	2	1	6134402	1	64	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF414	19	8509678	8514164	FALSE	1132	-0.583194501817822	26	7916513	8843246	NA	2	NA	NA	2	NA	926733	NA	25	10	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZNF415	19	53107879	53133077	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF416	19	57571566	57578927	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	10	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF417	19	57900296	57916610	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	9	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF418	19	57921884	57935393	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	11	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF419	19	57487711	57496097	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	10	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF420	19	37007857	37130314	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF423	16	49487524	49857919	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	20	2	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF425	7	149102784	149126346	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF426	19	9523224	9538645	FALSE	1136	-0.657304673205362	21	8981156	10119920	0.140309795179477	0	0	0.140309795179477	0	0	1138764	0	32	11	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF428	19	43607219	43619874	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF429	19	21496682	21556270	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF43	19	21804949	21852125	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	6	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF430	19	21020620	21060050	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	6	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF431	19	21142024	21196053	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	6	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF432	19	52031379	52095738	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	22	3	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF433	19	12014732	12035741	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF436	1	23359448	23369442	FALSE	8	-0.545679798863637	27	15940477	23530793	1	2	1	1	2	1	7590316	1	93	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF438	10	30820207	31031937	FALSE	638	-0.441875687518437	32	27112127	31908266	0.365165917639896	2	0	0.365165917639896	2	0	4796139	2	18	13	0	FALSE	CNLOH	PASS
659_bTo_pair	ZNF439	19	11848726	11883750	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF44	19	12224686	12294887	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	11	3	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF440	19	11814284	11835201	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF441	19	11767000	11784078	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF442	19	12345949	12365905	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF443	19	12429707	12441112	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	10	2	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF444	19	56132599	56160893	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF445	3	44431720	44477670	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	16	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF446	19	58474017	58481230	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	9	1	FALSE	GAIN	PASS
659_bTo_pair	ZNF449	23	135344796	135363152	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ZNF45	19	43912629	43935278	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	10	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF451	6	57086844	57170307	FALSE	405	-0.431201530115027	30	44270739	87152377	1	2	1	1	2	1	42881638	1	145	26	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF454	5	178941191	178966433	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF460	19	57280051	57293569	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	9	2	FALSE	GAIN	PASS
659_bTo_pair	ZNF461	19	36637192	36666853	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF462	9	106863097	107013634	FALSE	610	-0.4600119888393	30	99221867	107329584	1	2	1	1	2	1	8107717	1	40	34	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF467	7	149764182	149773479	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF468	19	52838008	52890375	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF469	16	88427471	88440757	FALSE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	42	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF470	19	56567511	56588911	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	11	2	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF471	19	56507843	56530221	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	10	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF473	19	50025714	50053414	FALSE	1188	-0.618483810312834	23	48298167	50381944	0.186356639256811	1	0	0.186356639256811	1	0	2083777	1	100	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF474	5	122129513	122153571	FALSE	332	0.458116582973227	66	122076938	122775147	0.364342740527346	7	NA	0.364342740527346	7	NA	698209	NA	5	5	0	FALSE	INDETERMINATE	PASS
659_bTo_pair	ZNF479	7	57119614	57139864	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	4	3	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF48	16	30378106	30400108	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF480	19	52297177	52325922	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	6	2	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF483	9	111525159	111577844	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF484	9	92845031	92878038	FALSE	606	-0.547644280946133	27	91214370	95094057	1	2	1	1	2	1	3879687	1	31	13	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF485	10	43606407	43617903	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	8	0	FALSE	CNLOH	PASS
659_bTo_pair	ZNF486	19	20167228	20200490	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF487	10	43436841	43483179	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	5	0	FALSE	CNLOH	PASS
659_bTo_pair	ZNF488	10	47365496	47384273	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	3	2	FALSE	CNLOH	PASS
659_bTo_pair	ZNF490	19	12577961	12640098	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF491	19	11797667	11809622	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF492	19	22634324	22667670	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF493	19	21397119	21427573	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF496	1	247297412	247331846	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF497	19	58354357	58362848	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	6	1	FALSE	GAIN	PASS
659_bTo_pair	ZNF500	16	4748239	4767624	FALSE	948	-0.50183056320736	30	3974738	9116817	1	2	1	1	2	1	5142079	1	40	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF501	3	44729596	44737083	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF502	3	44712643	44723831	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF503	10	75397830	75401906	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	9	0	FALSE	CNLOH	PASS
659_bTo_pair	ZNF506	19	19785839	19821751	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF507	19	32345594	32387667	FALSE	1165	-0.570153591761829	23	29923697	33225768	0.186356639256811	1	0	0.186356639256811	1	0	3302071	1	18	13	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF510	9	96755865	96778129	FALSE	608	-0.541405085979946	27	95522076	99069752	1	2	1	1	2	1	3547676	1	31	11	3	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF511	10	133308475	133313162	FALSE	676	-0.612597388333807	25	132187132	133626712	0.365165917639896	1	0	0.365165917639896	1	0	1439580	1	27	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF511-PRAP1	10	133309410	133352529	FALSE	676	-0.612597388333807	25	132187132	133626712	0.365165917639896	1	0	0.365165917639896	1	0	1439580	1	27	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF512	2	27582969	27623215	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	15	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF512B	20	63956702	63969865	FALSE	1225	-0.32421417626258	43	63733191	64273510	0.192136715055622	3	NA	0.192136715055622	3	NA	540319	NA	22	18	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ZNF513	2	27377231	27380790	FALSE	100	-0.462744837101375	30	25839301	29181915	1	2	1	1	2	1	3342614	1	63	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF514	2	95147330	95165413	FALSE	124	-0.442343383384306	30	84433416	95851223	1	2	1	1	2	1	11417807	1	60	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF516	18	76358190	76495190	FALSE	1113	-0.883471952658051	12	75410842	80247341	0.365165917639896	1	0	0.365165917639896	1	0	4836499	1	17	16	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF517	8	144798876	144811169	FALSE	569	-0.29739638799535	43	144518163	145054121	0.192136715055622	3	NA	0.192136715055622	3	NA	535958	NA	13	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ZNF518A	10	96129715	96205288	FALSE	663	-0.556688707084635	24	94775074	96952170	0.359751661895656	2	0	0.359751661895656	2	0	2177096	2	21	24	1	FALSE	CNLOH	PASS
659_bTo_pair	ZNF518B	4	10439874	10457410	FALSE	276	-0.283670259630246	44	1983421	17632561	0.345317016959666	3	1	0.345317016959666	3	1	15649140	2	110	13	1	FALSE	GAIN	PASS
659_bTo_pair	ZNF519	18	14057457	14132490	FALSE	1089	-0.194150400228894	47	905485	21864512	0.365165917639896	3	1	0.365165917639896	3	1	20959027	2	63	6	1	FALSE	GAIN	PASS
659_bTo_pair	ZNF521	18	25061926	25352190	FALSE	1092	-0.343778661372467	40	22996392	32392985	0.308149309490068	3	1	0.308149309490068	3	1	9396593	2	36	19	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF524	19	55600022	55603138	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	4	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF525	19	53365693	53392217	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF526	19	42220271	42228201	FALSE	1177	-0.671885212726332	22	41354916	42250573	0.291335969972972	1	0	0.291335969972972	1	0	895657	1	32	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF527	19	37371061	37393066	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF528	19	52397849	52418412	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF529	19	36534774	36605276	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF530	19	57599885	57612722	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	9	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF532	18	58862600	58986480	FALSE	1107	-0.779150604055344	19	58918284	59696746	0.365165917639896	1	0	0.365165917639896	1	0	778462	1	7	19	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF534	19	52429187	52452315	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF536	19	30228290	30713538	FALSE	1165	-0.570153591761829	23	29923697	33225768	0.186356639256811	1	0	0.186356639256811	1	0	3302071	1	18	18	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF540	19	37551406	37614097	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF541	19	47520685	47555856	FALSE	1187	-0.64296711085636	26	47021158	48297657	NA	2	NA	NA	2	NA	1276499	NA	31	23	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZNF543	19	57320509	57330776	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	10	3	FALSE	GAIN	PASS
659_bTo_pair	ZNF544	19	58228594	58277495	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	13	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF546	19	39984134	40021041	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	9	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF547	19	57363477	57379565	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	9	1	FALSE	GAIN	PASS
659_bTo_pair	ZNF548	19	57389850	57402992	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	9	1	FALSE	GAIN	PASS
659_bTo_pair	ZNF549	19	57527325	57557542	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	17	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF550	19	57535257	57559863	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	16	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF551	19	57681969	57717301	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	16	2	FALSE	GAIN	PASS
659_bTo_pair	ZNF552	19	57803841	57814913	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	7	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF554	19	2819874	2835773	FALSE	1120	-0.63588318052236	23	2233887	3062886	0.186356639256811	1	0	0.186356639256811	1	0	828999	1	28	9	3	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF555	19	2841435	2860484	FALSE	1120	-0.63588318052236	23	2233887	3062886	0.186356639256811	1	0	0.186356639256811	1	0	828999	1	28	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF556	19	2867335	2883445	FALSE	1120	-0.63588318052236	23	2233887	3062886	0.186356639256811	1	0	0.186356639256811	1	0	828999	1	28	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF557	19	7069444	7087968	FALSE	1128	-0.566723388755247	23	6665178	7083719	0.186356639256811	1	0	0.186356639256811	1	0	418541	1	13	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF558	19	8806170	8832328	FALSE	1132	-0.583194501817822	26	7916513	8843246	NA	2	NA	NA	2	NA	926733	NA	25	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZNF559	19	9323772	9351162	FALSE	1136	-0.657304673205362	21	8981156	10119920	0.140309795179477	0	0	0.140309795179477	0	0	1138764	0	32	12	3	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF559-ZNF177	19	9324174	9382617	FALSE	1136	-0.657304673205362	21	8981156	10119920	0.140309795179477	0	0	0.140309795179477	0	0	1138764	0	32	21	7	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF560	19	9466507	9498607	FALSE	1136	-0.657304673205362	21	8981156	10119920	0.140309795179477	0	0	0.140309795179477	0	0	1138764	0	32	14	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF561	19	9604680	9621399	FALSE	1136	-0.657304673205362	21	8981156	10119920	0.140309795179477	0	0	0.140309795179477	0	0	1138764	0	32	9	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF562	19	9641808	9675086	FALSE	1136	-0.657304673205362	21	8981156	10119920	0.140309795179477	0	0	0.140309795179477	0	0	1138764	0	32	8	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF563	19	12317477	12333720	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF564	19	12525370	12551542	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF565	19	36182060	36246257	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF566	19	36445119	36489902	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	7	2	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF567	19	36687612	36727701	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF568	19	36916329	36998700	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	16	8	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF569	19	37411155	37469275	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF57	19	2900898	2918476	FALSE	1120	-0.63588318052236	23	2233887	3062886	0.186356639256811	1	0	0.186356639256811	1	0	828999	1	28	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF570	19	37467585	37488652	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF571	19	37554782	37594790	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	6	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF572	8	124973298	124979389	FALSE	563	-0.257971248057735	44	116942551	127415908	0.345317016959666	3	1	0.345317016959666	3	1	10473357	2	45	8	1	FALSE	GAIN	PASS
659_bTo_pair	ZNF573	19	37735833	37817300	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF574	19	42068477	42081549	FALSE	1177	-0.671885212726332	22	41354916	42250573	0.291335969972972	1	0	0.291335969972972	1	0	895657	1	32	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF575	19	43525497	43536130	FALSE	1179	-0.582084941516902	26	42297317	43535595	NA	2	NA	NA	2	NA	1238278	NA	25	7	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZNF576	19	43596392	43601157	FALSE	1181	-0.585214255637013	23	43577154	45348915	0.186356639256811	1	0	0.186356639256811	1	0	1771761	1	64	3	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF577	19	51804816	51890950	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF578	19	52453576	52512154	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF579	19	55576770	55580845	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF580	19	55635016	55643469	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	2	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF581	19	55635459	55645622	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF582	19	56375846	56393545	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	10	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF583	19	56397966	56436035	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	8	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF584	19	58401504	58418327	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	9	2	FALSE	GAIN	PASS
659_bTo_pair	ZNF585A	19	37106734	37172741	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF585B	19	37181579	37218153	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF586	19	57769655	57819939	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	14	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF587	19	57849857	57865112	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	9	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF587B	19	57819741	57846238	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	6	2	FALSE	GAIN	PASS
659_bTo_pair	ZNF589	3	48241100	48299253	FALSE	216	-0.864973638415933	13	47126621	49358269	0.365165917639896	1	0	0.365165917639896	1	0	2231648	1	50	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF592	15	84748635	84806432	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	19	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF593	1	26169871	26170873	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	4	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF594	17	5179536	5191883	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF595	4	53285	88211	FALSE	272	-0.300029378244858	40	85877	1745020	0.308149309490068	3	1	0.308149309490068	3	1	1659143	2	29	3	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF596	8	232137	264703	FALSE	510	-0.906181747703467	12	166288	7823395	0.365165917639896	1	0	0.365165917639896	1	0	7657107	1	48	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF597	16	3432422	3443553	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF598	16	1997654	2009823	FALSE	938	-0.541386594301884	29	1947002	2038739	NA	2	NA	NA	2	NA	91737	NA	11	17	5	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZNF599	19	34758076	34773229	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF600	19	52749942	52786807	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	9	2	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF605	12	132918308	132956306	FALSE	818	-0.324030199616913	43	132687628	133234369	0.192136715055622	3	NA	0.192136715055622	3	NA	546741	NA	14	10	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ZNF606	19	57977053	58003349	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	13	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF607	19	37696363	37719790	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF608	5	124636913	124748807	FALSE	333	-0.728004202067602	17	122795243	132441120	0.365165917639896	1	0	0.365165917639896	1	0	9645877	1	41	22	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF609	15	64460742	64686068	FALSE	908	-0.678995144857454	20	51341867	66352944	0.365165917639896	1	0	0.365165917639896	1	0	15011077	1	105	21	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF610	19	52336245	52367778	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF611	19	52702813	52735073	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF613	19	51927147	51948759	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF614	19	52012765	52030240	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	10	3	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF615	19	51991332	52008230	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	14	3	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF616	19	52113091	52139922	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF618	9	113876282	114056591	FALSE	615	-0.432300635893592	31	113370054	121567147	1	2	1	1	2	1	8197093	1	41	21	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF619	3	40477113	40490236	FALSE	212	-0.750996176556328	19	38165958	40533064	0.365165917639896	1	0	0.365165917639896	1	0	2367106	1	26	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF620	3	40477131	40518736	FALSE	212	-0.750996176556328	19	38165958	40533064	0.365165917639896	1	0	0.365165917639896	1	0	2367106	1	26	18	2	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF621	3	40524878	40574685	FALSE	212	-0.750996176556328	19	38165958	40533064	0.365165917639896	1	0	0.365165917639896	1	0	2367106	1	26	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF622	5	16451519	16465792	FALSE	310	-0.251515648633541	44	1318404	23523310	0.345317016959666	3	1	0.345317016959666	3	1	22204906	2	60	9	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF623	8	143636013	143656418	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF624	17	16620737	16653856	FALSE	1012	-0.646922995033775	26	16234077	17184849	NA	2	NA	NA	2	NA	950772	NA	11	13	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZNF625	19	12142090	12156729	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF625-ZNF20	19	12132117	12156731	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	14	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF626	19	20620061	20661596	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF627	19	11559374	11619135	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	15	2	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF628	19	55476332	55484487	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	13	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF629	16	30778449	30787202	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF630	23	47983356	48071658	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	12	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF638	2	71276561	71435069	FALSE	120	-0.453876103103185	30	61826440	73958750	1	2	1	1	2	1	12132310	1	87	41	6	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF639	3	179322991	179338583	FALSE	253	-0.302573270656947	43	179243074	180989661	0.192136715055622	3	NA	0.192136715055622	3	NA	1746587	NA	13	8	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ZNF641	12	48337180	48351414	FALSE	768	-0.491963868457131	34	48045387	49018767	NA	2	NA	NA	2	NA	973380	NA	28	8	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZNF644	1	90915298	91022272	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF646	16	31074422	31084196	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	23	2	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF648	1	182054570	182061712	FALSE	58	-0.398549800919199	35	179302743	193101120	1	2	1	1	2	1	13798377	1	62	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF649	19	51889224	51905040	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF652	17	49289206	49362473	FALSE	1051	-0.636429062465303	26	48785033	49576193	NA	2	NA	NA	2	NA	791160	NA	15	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZNF653	19	11483427	11505923	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF654	3	88059274	88144665	FALSE	232	-0.785224171872638	14	72888305	88156485	0.365165917639896	1	0	0.365165917639896	1	0	15268180	1	18	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF655	7	99558406	99576453	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF658	9	66856426	66932141	FALSE	595	-0.209027397852981	47	37442028	67884575	0.365165917639896	3	1	0.365165917639896	3	1	30442547	2	35	15	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF66	19	20776304	20807322	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	5	1	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF660	3	44578223	44599694	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF662	3	42905731	42917641	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF664	12	123971845	124015439	FALSE	816	-0.518173003347855	27	122078895	132621951	1	2	1	1	2	1	10543056	1	69	3	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF665	19	53159213	53193386	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	6	3	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF667	19	56439325	56478065	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	10	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF668	16	31060843	31074320	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF669	1	247099962	247104372	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF670	1	247036784	247078755	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF670-ZNF695	1	246945547	247078811	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	17	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF671	19	57719751	57727624	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	8	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF672	1	248838210	248849517	FALSE	88	-0.491817591117162	34	248559031	248918142	NA	2	NA	NA	2	NA	359111	NA	12	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZNF674	23	46497727	46545457	FALSE	1292	0.0982305969328026	59	45151653	47144467	0.308533751035793	5	NA	0.308533751035793	5	NA	1992814	NA	9	9	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF675	19	23525631	23687220	FALSE	1163	-0.446590628984043	34	23373705	29714877	NA	2	NA	NA	2	NA	6341172	NA	10	5	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZNF676	19	22179091	22215775	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	4	1	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF677	19	53235381	53254898	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF678	1	227563543	227677443	FALSE	78	-0.585829298689137	23	226881976	234420733	0.186356639256811	1	0	0.186356639256811	1	0	7538757	1	58	5	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF679	7	64228474	64266931	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	5	2	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF680	7	64519884	64563106	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF681	19	23739195	23758891	FALSE	1163	-0.446590628984043	34	23373705	29714877	NA	2	NA	NA	2	NA	6341172	NA	10	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZNF682	19	19997058	20039506	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	5	2	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF683	1	26361634	26374522	FALSE	10	-0.483847947047874	30	23759523	26457879	1	2	1	1	2	1	2698356	1	53	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF684	1	40531561	40548169	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF687	1	151281618	151292180	FALSE	49	-0.475922316124304	30	150966103	155881468	1	2	1	1	2	1	4915365	1	168	18	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF688	16	30569346	30572734	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF689	16	30602558	30624012	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF69	19	11887784	11914329	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF691	1	42846573	42852477	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF692	1	248850006	248859144	FALSE	88	-0.491817591117162	34	248559031	248918142	NA	2	NA	NA	2	NA	359111	NA	12	13	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZNF695	1	246945547	247008093	FALSE	86	-0.490965048428506	30	244051489	248273503	1	2	1	1	2	1	4222014	1	51	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF696	8	143289676	143298061	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF697	1	119619422	119647773	FALSE	43	-0.890933866500247	13	117628427	119906570	0.365165917639896	1	0	0.365165917639896	1	0	2278143	1	13	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF699	19	9294275	9309838	FALSE	1136	-0.657304673205362	21	8981156	10119920	0.140309795179477	0	0	0.140309795179477	0	0	1138764	0	32	10	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF7	8	144827464	144847509	FALSE	569	-0.29739638799535	43	144518163	145054121	0.192136715055622	3	NA	0.192136715055622	3	NA	535958	NA	13	11	1	FALSE	GAIN (many states)	PASS
659_bTo_pair	ZNF70	22	23738678	23751092	FALSE	1252	-0.948790128902656	11	23317677	23779437	0.289956079954009	0	0	0.289956079954009	0	0	461760	0	9	6	1	FALSE	HOMDEL	PASS
659_bTo_pair	ZNF700	19	11925068	11950773	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF701	19	52555457	52587174	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	5	2	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF703	8	37695751	37700021	FALSE	529	2.1441581824073	107	36935590	37699905	0.364342740527346	30	NA	0.364342740527346	30	NA	764315	NA	2	13	0	FALSE	AMP	PASS
659_bTo_pair	ZNF704	8	80628451	80874781	FALSE	555	-0.159511074627846	49	73976510	89921105	0.365165917639896	3	1	0.365165917639896	3	1	15944595	2	50	10	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF705A	12	8157034	8188537	FALSE	745	-0.243574834353832	44	6965649	8175835	0.345317016959666	3	1	0.345317016959666	3	1	1210186	2	26	7	1	TRUE	GAIN	PASS
659_bTo_pair	ZNF705B	8	7926337	7952413	FALSE	512	-0.331719190506888	43	7863565	8376842	0.192136715055622	3	NA	0.192136715055622	3	NA	513277	NA	7	3	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ZNF705D	8	12104389	12115516	FALSE	518	-0.751891082346597	17	11761650	23571851	0.365165917639896	1	0	0.365165917639896	1	0	11810201	1	79	2	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF705E	11	71814045	71821548	FALSE	708	-0.248780970484103	44	70078591	76410946	0.345317016959666	3	1	0.345317016959666	3	1	6332355	2	76	6	1	FALSE	GAIN	PASS
659_bTo_pair	ZNF705G	8	7355517	7385558	FALSE	510	-0.906181747703467	12	166288	7823395	0.365165917639896	1	0	0.365165917639896	1	0	7657107	1	48	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF706	8	101177878	101206193	FALSE	559	-0.27670289345411	44	92102925	102238849	0.345317016959666	3	1	0.345317016959666	3	1	10135924	2	52	2	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF707	8	143684452	143713898	FALSE	566	-0.467853135718961	31	134637605	144506087	1	2	1	1	2	1	9868482	1	91	13	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF708	19	21291160	21329425	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF709	19	12461184	12513854	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF71	19	56595264	56626481	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	6	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF710	15	90001392	90082206	FALSE	925	-0.863518905667221	13	89317527	90079704	0.365165917639896	1	0	0.365165917639896	1	0	762177	1	14	10	1	TRUE	HETLOSS	PASS
659_bTo_pair	ZNF711	23	85244032	85273362	FALSE	1319	0.104367844050444	59	77829172	101348427	0.308533751035793	5	NA	0.308533751035793	5	NA	23519255	NA	51	14	0	FALSE	AMP (many states)	suppress_segment_too_large
659_bTo_pair	ZNF713	7	55887475	55942530	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF714	19	21082159	21125270	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	3	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF716	7	57450177	57473546	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF717	3	75678660	75785583	FALSE	232	-0.785224171872638	14	72888305	88156485	0.365165917639896	1	0	0.365165917639896	1	0	15268180	1	18	14	9	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF718	4	124480	202303	FALSE	272	-0.300029378244858	40	85877	1745020	0.308149309490068	3	1	0.308149309490068	3	1	1659143	2	29	6	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF720	16	31713229	31794869	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF721	4	425815	499156	FALSE	272	-0.300029378244858	40	85877	1745020	0.308149309490068	3	1	0.308149309490068	3	1	1659143	2	29	2	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF723	19	22832321	22858667	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF724	19	23221599	23250390	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF726	19	23914876	23945159	FALSE	1163	-0.446590628984043	34	23373705	29714877	NA	2	NA	NA	2	NA	6341172	NA	10	6	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZNF727	7	64045443	64078549	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	6	2	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF728	19	22975468	23003176	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF729	19	22286408	22317176	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF730	19	23075210	23147219	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	6	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF732	4	270675	305321	FALSE	272	-0.300029378244858	40	85877	1745020	0.308149309490068	3	1	0.308149309490068	3	1	1659143	2	29	7	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF735	7	64207090	64220508	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	6	2	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF736	7	64307459	64354860	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF737	19	20535825	20565809	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF738	19	21358930	21379302	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF74	22	20394115	20408461	FALSE	1242	-0.590620603113975	24	18611204	20887669	0.359751661895656	2	0	0.359751661895656	2	0	2276465	2	42	11	1	FALSE	CNLOH	PASS
659_bTo_pair	ZNF740	12	53180700	53195141	FALSE	774	-0.460330174150442	30	52007103	55966039	1	2	1	1	2	1	3958936	1	115	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF746	7	149472696	149497817	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF747	16	30530367	30535347	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF749	19	57435329	57445485	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	11	1	FALSE	GAIN	PASS
659_bTo_pair	ZNF750	17	82829435	82840578	FALSE	1085	-0.607666454607286	26	82405295	83094473	NA	2	NA	NA	2	NA	689178	NA	13	9	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZNF75A	16	3305406	3318852	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	9	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF75D	23	135248920	135344087	FALSE	1337	-0.0556483450801764	55	134460286	139832175	0.328696605851359	4	NA	0.328696605851359	4	NA	5371889	NA	45	10	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ZNF76	6	35258909	35295985	FALSE	392	-0.183129995366178	48	35241630	35475885	0.365165917639896	3	NA	0.365165917639896	3	NA	234255	NA	7	13	2	FALSE	GAIN (many states)	PASS
659_bTo_pair	ZNF761	19	53431993	53458261	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	7	2	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF763	19	11965037	11980381	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF764	16	30553764	30558498	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF765	19	53389793	53430413	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	5	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF766	19	52269571	52296046	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF768	16	30524001	30526821	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	7	2	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF77	19	2933218	2944971	FALSE	1120	-0.63588318052236	23	2233887	3062886	0.186356639256811	1	0	0.186356639256811	1	0	828999	1	28	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF770	15	34978341	34988287	FALSE	890	-0.864832779596883	13	34359248	37966686	0.365165917639896	1	0	0.365165917639896	1	0	3607438	1	12	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF771	16	30407297	30431108	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF772	19	57466663	57477570	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	9	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF773	19	57499915	57518404	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	10	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF774	15	90352245	90369146	FALSE	927	-0.86531749998723	13	90191956	90642068	0.365165917639896	1	0	0.365165917639896	1	0	450112	1	11	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF775	7	150379335	150398631	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF776	19	57746796	57758159	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	8	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF777	7	149431363	149461123	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF778	16	89217703	89237071	FALSE	989	-0.562477775355538	23	86511067	89274760	0.186356639256811	1	0	0.186356639256811	1	0	2763693	1	35	13	4	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF780A	19	40069152	40090938	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	10	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF780B	19	40028260	40056209	FALSE	1171	-0.664983660998742	21	39197093	40226636	0.140309795179477	0	0	0.140309795179477	0	0	1029543	0	34	11	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF781	19	37667751	37692322	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF782	9	96816472	96875623	FALSE	608	-0.541405085979946	27	95522076	99069752	1	2	1	1	2	1	3547676	1	31	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF783	7	149262171	149297302	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	10	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF784	19	55620742	55624601	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	5	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF785	16	30573740	30585771	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF786	7	149069643	149090782	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	12	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF787	19	56087366	56121280	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF789	7	99472841	99503650	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	17	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF79	9	127424374	127445372	FALSE	619	-0.820686000870706	14	125203036	127778681	0.365165917639896	1	0	0.365165917639896	1	0	2575645	1	23	9	3	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF790	19	36817428	36850787	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF791	19	12610918	12633840	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF792	19	34956354	34964049	FALSE	1167	-0.600313182554772	23	33391509	35714883	0.186356639256811	1	0	0.186356639256811	1	0	2323374	1	48	10	3	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF793	19	37506939	37548762	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	7	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF799	19	12390016	12401271	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	10	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF8	19	58278951	58302805	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	10	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF80	3	114234631	114237578	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	4	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF800	7	127346790	127431924	FALSE	492	-0.463656181520944	30	126439208	129166764	1	2	1	1	2	1	2727556	1	27	11	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF804A	2	184598366	184939492	FALSE	157	-0.495064743595466	30	181539293	185786350	1	2	1	1	2	1	4247057	1	12	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF804B	7	88759368	89337057	FALSE	479	-0.448308050861149	30	87602941	92590330	1	2	1	1	2	1	4987389	1	30	22	3	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF805	19	57240685	57255135	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	10	3	TRUE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF808	19	52527652	52564464	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	8	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF81	23	47836902	48002561	FALSE	1296	0.168308381827633	60	47574340	49002238	0.364342740527346	5	NA	0.364342740527346	5	NA	1427898	NA	36	19	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF813	19	53467735	53496255	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	5	2	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF814	19	57848731	57889074	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	21	1	FALSE	GAIN	PASS
659_bTo_pair	ZNF816	19	52949379	52962911	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF816-ZNF321P	19	52928475	52962823	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF821	16	71859680	71895336	FALSE	983	-0.428709389755029	30	71178941	72171154	1	2	1	1	2	1	992213	1	22	9	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF823	19	11721265	11739009	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	10	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF827	4	145757627	145938635	FALSE	300	-0.423460920061428	34	143186078	151174790	NA	2	NA	NA	2	NA	7988712	NA	32	20	0	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZNF829	19	36888124	36916291	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	7	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF83	19	52594060	52690496	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	6	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF830	17	34961530	34963775	FALSE	1022	-0.670211431189836	22	32030679	35026358	0.291335969972972	1	0	0.291335969972972	1	0	2995679	1	23	5	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF831	20	59123381	59259113	FALSE	1223	-0.471189742627826	30	58981268	63697541	1	2	1	1	2	1	4716273	1	54	21	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF835	19	56661981	56671783	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	7	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF836	19	52153864	52171643	FALSE	1191	1.13441166529856	83	52155074	52229710	0.364342740527346	13	NA	0.364342740527346	13	NA	74636	NA	2	14	2	FALSE	AMP	PASS
659_bTo_pair	ZNF837	19	58367618	58381060	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	7	0	FALSE	GAIN	PASS
659_bTo_pair	ZNF839	14	102317377	102342702	FALSE	878	-0.78309571727566	16	102193484	102726534	0.365165917639896	1	0	0.365165917639896	1	0	533050	1	7	15	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF84	12	133037292	133063304	FALSE	818	-0.324030199616913	43	132687628	133234369	0.192136715055622	3	NA	0.192136715055622	3	NA	546741	NA	14	9	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ZNF841	19	52064466	52095765	FALSE	1190	-0.642263181991009	23	50418938	52130489	0.186356639256811	1	0	0.186356639256811	1	0	1711551	1	68	12	2	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF843	16	31432593	31443160	FALSE	966	-0.410053288098397	35	29983132	50731717	1	2	1	1	2	1	20748585	1	110	4	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF844	19	12064699	12081565	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF845	19	53333746	53356906	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF846	19	9751993	9793180	FALSE	1136	-0.657304673205362	21	8981156	10119920	0.140309795179477	0	0	0.140309795179477	0	0	1138764	0	32	9	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF85	19	20923222	20950697	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF850	19	36714383	36772825	FALSE	1169	-0.588927225709855	23	35740080	39110157	0.186356639256811	1	0	0.186356639256811	1	0	3370077	1	96	16	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF852	3	44494847	44510636	FALSE	214	-0.789732695076886	14	41247033	47009265	0.365165917639896	1	0	0.365165917639896	1	0	5762232	1	74	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF853	7	6615617	6624290	FALSE	456	-0.240618790532325	45	6028682	12688782	0.279823559258657	3	0	0.279823559258657	3	0	6660100	3	32	10	0	FALSE	CNLOH & GAIN	PASS
659_bTo_pair	ZNF860	3	31981771	31991628	FALSE	208	1.07643165362814	81	31662106	31989724	0.364342740527346	12	NA	0.364342740527346	12	NA	327618	NA	2	5	2	TRUE	AMP	PASS
659_bTo_pair	ZNF862	7	149838367	149867479	FALSE	506	-0.610056434228596	23	149006068	152120799	0.186356639256811	1	0	0.186356639256811	1	0	3114731	1	58	19	3	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF865	19	55605405	55617269	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	12	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNF878	19	12043805	12052939	FALSE	1145	-0.412180269046053	35	11394439	12933718	1	2	1	1	2	1	1539279	1	67	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF879	5	179023752	179035064	FALSE	361	-0.765786236606534	17	177301825	180591498	0.365165917639896	1	0	0.365165917639896	1	0	3289673	1	55	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNF880	19	52369917	52385795	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	8	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF883	9	112997120	113050043	FALSE	614	-0.470926373728339	30	109119887	113369593	1	2	1	1	2	1	4249706	1	39	14	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF888	19	52904417	52923481	FALSE	1192	-0.430258934203587	30	52269623	54842873	1	2	1	1	2	1	2573250	1	75	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF891	12	133106817	133130473	FALSE	818	-0.324030199616913	43	132687628	133234369	0.192136715055622	3	NA	0.192136715055622	3	NA	546741	NA	14	6	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ZNF90	19	20077994	20127076	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	4	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF91	19	23304991	23395560	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	5	1	TRUE	AMP (many states)	PASS
659_bTo_pair	ZNF92	7	65373799	65401135	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	8	2	FALSE	DIPLOID	PASS
659_bTo_pair	ZNF93	19	19900913	19963464	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	4	1	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF98	19	22391019	22532485	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	6	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNF99	19	22752183	22784107	FALSE	1162	0.115454325954912	59	19492331	23362645	0.308533751035793	5	NA	0.308533751035793	5	NA	3870314	NA	45	5	0	FALSE	AMP (many states)	PASS
659_bTo_pair	ZNFX1	20	49237946	49278426	FALSE	1216	-0.465272765977354	30	47658376	50278257	1	2	1	1	2	1	2619881	1	18	36	2	FALSE	DIPLOID	PASS
659_bTo_pair	ZNHIT1	7	101217668	101224190	FALSE	484	-0.570670723449775	26	101042591	102111653	NA	2	NA	NA	2	NA	1069062	NA	15	5	2	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZNHIT2	11	65116403	65117708	FALSE	706	-0.339087369879824	40	64813799	69427693	0.308149309490068	3	1	0.308149309490068	3	1	4613894	2	142	5	0	FALSE	GAIN	PASS
659_bTo_pair	ZNHIT3	17	36486629	36499310	FALSE	1024	-0.671322120187016	21	35120929	39451054	0.140309795179477	0	0	0.140309795179477	0	0	4330125	0	83	9	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZNHIT6	1	85649423	85708433	FALSE	29	-0.415444379204939	35	85351612	94517045	1	2	1	1	2	1	9165433	1	56	11	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNRD1	6	30058899	30064909	FALSE	377	-0.687880370218139	22	29953381	30346790	0.291335969972972	1	0	0.291335969972972	1	0	393409	1	11	4	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZNRF1	16	74999030	75110994	FALSE	985	-0.535856717220494	27	73127354	81709711	1	2	1	1	2	1	8582357	1	51	5	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZNRF2	7	30284307	30367692	FALSE	461	-0.227599658354029	44	14736095	41683048	0.345317016959666	3	1	0.345317016959666	3	1	26946953	2	130	5	0	FALSE	GAIN	PASS
659_bTo_pair	ZNRF3	22	28883592	29057487	TRUE	1255	0.261638839895489	63	28687966	29044744	0.364342740527346	6	NA	0.364342740527346	6	NA	356778	NA	5	40	6	TRUE	AMP (many states)	PASS
659_bTo_pair	ZNRF4	19	5455431	5456856	FALSE	1126	-0.497618289025796	30	5304643	6534632	1	2	1	1	2	1	1229989	1	38	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZP1	11	60867562	60875693	FALSE	700	-0.237923884958626	44	59364870	62518273	0.345317016959666	3	1	0.345317016959666	3	1	3153403	2	79	13	2	FALSE	GAIN	PASS
659_bTo_pair	ZP2	16	21197450	21214510	FALSE	958	-0.480288407107869	30	14140591	23596140	1	2	1	1	2	1	9455549	1	86	19	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZP3	7	76397518	76442071	FALSE	470	-0.484942222740009	30	55478454	77954966	1	2	1	1	2	1	22476512	1	101	16	5	FALSE	DIPLOID	PASS
659_bTo_pair	ZP4	1	237877864	237890922	FALSE	82	-0.550278310688863	27	235196044	241494870	1	2	1	1	2	1	6298826	1	22	12	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZPBP	7	49850421	50121329	FALSE	465	0.0412518069674403	56	48245888	50159047	0.365165917639896	4	NA	0.365165917639896	4	NA	1913159	NA	5	14	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ZPBP2	17	39868164	39877896	FALSE	1030	-0.735138103765796	19	39868404	40278196	0.365165917639896	1	0	0.365165917639896	1	0	409792	1	14	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZPLD1	3	102099244	102479841	FALSE	234	-0.256618217983437	44	93874275	119817101	0.345317016959666	3	1	0.345317016959666	3	1	25942826	2	120	12	2	FALSE	GAIN	PASS
659_bTo_pair	ZPR1	11	116773799	116788050	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	14	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZRANB1	10	124942123	124988189	FALSE	675	-0.48230846498148	32	121836739	132168178	0.365165917639896	2	0	0.365165917639896	2	0	10331439	2	55	12	1	FALSE	CNLOH	PASS
659_bTo_pair	ZRANB2	1	71063291	71081297	FALSE	23	-0.326404897444941	43	65224778	71080923	0.192136715055622	3	NA	0.192136715055622	3	NA	5856145	NA	29	10	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ZRANB3	2	135136916	135531236	FALSE	143	-0.480247761121536	30	127295839	135985412	1	2	1	1	2	1	8689573	1	53	30	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZRSR2	23	15790472	15823260	FALSE	1275	1.83130284793933	100	15776780	15825738	0.364342740527346	23	NA	0.364342740527346	23	NA	48958	NA	2	15	1	FALSE	AMP	PASS
659_bTo_pair	ZSCAN1	19	58034032	58054631	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	7	1	FALSE	GAIN	PASS
659_bTo_pair	ZSCAN10	16	3088890	3099317	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	13	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZSCAN12	6	28378955	28399734	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	9	3	FALSE	DIPLOID	PASS
659_bTo_pair	ZSCAN16	6	28124560	28130082	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZSCAN18	19	58083838	58118427	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	11	2	FALSE	GAIN	PASS
659_bTo_pair	ZSCAN2	15	84600986	84627796	FALSE	917	-0.939051620116732	9	80120521	87854831	0.291955377254426	0	0	0.291955377254426	0	0	7734310	0	45	10	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZSCAN20	1	33472645	33496507	FALSE	12	-0.48510408605904	30	26790876	37034019	1	2	1	1	2	1	10243143	1	139	15	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZSCAN21	7	100049774	100065038	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZSCAN22	19	58327019	58342332	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	7	0	FALSE	GAIN	PASS
659_bTo_pair	ZSCAN23	6	28431930	28443502	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	6	3	FALSE	DIPLOID	PASS
659_bTo_pair	ZSCAN25	7	99616946	99632407	FALSE	482	-0.59963088785312	23	93135869	101032295	0.186356639256811	1	0	0.186356639256811	1	0	7896426	1	110	9	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZSCAN26	6	28267010	28278224	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZSCAN29	15	43358172	43371025	FALSE	900	-0.777056562410308	17	42718512	43401817	0.365165917639896	1	0	0.365165917639896	1	0	683305	1	13	13	3	FALSE	HETLOSS	PASS
659_bTo_pair	ZSCAN30	18	35251058	35290245	FALSE	1095	-0.699288883997088	20	33734323	36718652	0.365165917639896	1	0	0.365165917639896	1	0	2984329	1	17	8	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZSCAN31	6	28324693	28356271	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	6	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZSCAN32	16	3382081	3401065	FALSE	944	-0.598419690695498	23	2682627	3564976	0.186356639256811	1	0	0.186356639256811	1	0	882349	1	43	11	0	FALSE	HETLOSS	PASS
659_bTo_pair	ZSCAN4	19	57668935	57679152	FALSE	1194	-0.354052371804356	40	57253321	58571238	0.308149309490068	3	1	0.308149309490068	3	1	1317917	2	70	6	1	FALSE	GAIN	PASS
659_bTo_pair	ZSCAN5A	19	56219670	56368383	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	23	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZSCAN5B	19	56189570	56197920	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	7	0	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZSCAN5C	19	56202301	56209452	FALSE	1193	-0.676166460939621	21	54847267	57248689	0.140309795179477	0	0	0.140309795179477	0	0	2401422	0	79	7	1	FALSE	HOMDEL	suppress_large_homdel
659_bTo_pair	ZSCAN9	6	28224886	28233482	FALSE	375	-0.492718306913041	30	26370601	29676881	1	2	1	1	2	1	3306280	1	73	7	1	FALSE	DIPLOID	PASS
659_bTo_pair	ZSWIM1	20	45881227	45885266	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	7	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZSWIM2	2	186827835	186849208	FALSE	159	-0.50094907723407	34	185815441	189771912	NA	2	NA	NA	2	NA	3956471	NA	17	13	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZSWIM3	20	45857617	45879122	FALSE	1214	-0.481431729070847	31	45534464	47356665	1	2	1	1	2	1	1822201	1	38	9	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZSWIM4	19	13795460	13832230	FALSE	1147	-0.287846857860271	46	12946034	14482950	0.298322295679939	3	NA	0.298322295679939	3	NA	1536916	NA	34	18	0	FALSE	GAIN (many states)	PASS
659_bTo_pair	ZSWIM5	1	45016399	45306209	FALSE	14	-0.442609921028636	30	37493841	46036048	1	2	1	1	2	1	8542207	1	131	21	2	FALSE	DIPLOID	PASS
659_bTo_pair	ZSWIM6	5	61332273	61546170	FALSE	323	-0.645106866010582	25	58495036	67196614	0.365165917639896	1	0	0.365165917639896	1	0	8701578	1	31	20	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZSWIM7	17	15976560	15999717	FALSE	1009	-0.493836167698037	33	12666172	16027364	0.344071079426502	2	0	0.344071079426502	2	0	3361192	2	21	5	0	FALSE	CNLOH	PASS
659_bTo_pair	ZSWIM8	10	73785582	73801797	FALSE	653	-0.468211745983702	32	71286842	86687064	0.365165917639896	2	0	0.365165917639896	2	0	15400222	2	84	37	0	FALSE	CNLOH	PASS
659_bTo_pair	ZSWIM9	19	48170692	48197620	FALSE	1187	-0.64296711085636	26	47021158	48297657	NA	2	NA	NA	2	NA	1276499	NA	31	12	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZUP1	6	116635618	116668794	FALSE	417	-0.520434008170675	29	114058103	117272433	NA	2	NA	NA	2	NA	3214330	NA	20	12	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZW10	11	113733187	113773811	FALSE	726	-0.580664836906057	23	112143830	118409077	0.186356639256811	1	0	0.186356639256811	1	0	6265247	1	59	17	1	FALSE	HETLOSS	PASS
659_bTo_pair	ZWILCH	15	66504959	66550128	FALSE	910	-0.956752978196304	11	66494510	66716498	0.289956079954009	0	0	0.289956079954009	0	0	221988	0	5	20	0	FALSE	HOMDEL	PASS
659_bTo_pair	ZWINT	10	56357228	56361275	FALSE	642	-0.476729957705105	33	43155157	60733235	0.344071079426502	2	0	0.344071079426502	2	0	17578078	2	80	8	0	FALSE	CNLOH	PASS
659_bTo_pair	ZXDA	23	57906708	57910820	FALSE	1304	1.77517103734255	98	57592270	57909565	0.364342740527346	22	NA	0.364342740527346	22	NA	317295	NA	3	9	1	TRUE	AMP	PASS
659_bTo_pair	ZXDB	23	57591652	57597545	FALSE	1304	1.77517103734255	98	57592270	57909565	0.364342740527346	22	NA	0.364342740527346	22	NA	317295	NA	3	9	0	FALSE	AMP	PASS
659_bTo_pair	ZXDC	3	126437601	126475919	FALSE	238	-0.290800028268329	44	121570780	128463019	0.345317016959666	3	1	0.345317016959666	3	1	6892239	2	63	15	1	FALSE	GAIN	PASS
659_bTo_pair	ZYG11A	1	52842511	52894998	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZYG11B	1	52726467	52827342	FALSE	19	-0.396715345982287	35	51102245	58677041	1	2	1	1	2	1	7574796	1	67	16	0	FALSE	DIPLOID	PASS
659_bTo_pair	ZYX	7	143381080	143391111	FALSE	503	-0.495530614890199	34	143026241	143572680	NA	2	NA	NA	2	NA	546439	NA	15	11	1	FALSE	DIPLOID or CNLOH	PASS
659_bTo_pair	ZZEF1	17	4004445	4143020	FALSE	998	-0.779228634965757	17	1361171	7294550	0.365165917639896	1	0	0.365165917639896	1	0	5933379	1	138	63	9	FALSE	HETLOSS	PASS