succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 34s 33s 0s 0s 0 bytes 89% 124.7 KB 1.1 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 4s 1s 0s 2s 17.0 MB 100% 2.1 MB 5.7 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (659_dRe-N1-BDNA-1_B23KFG5LT4_1) 17s 1s 6s 9s 1.2 GB 8246% 1.6 GB 6.8 MB 39.9 MB 29.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (659_dRe-N1-BDNA-1_B23KFG5LT4_1) 11m 29s 14s 8m 35s 2m 39s 1.6 GB 1149% 102.9 GB 36.3 MB 31.7 GB 722.2 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BCFTOOLS_STRIP_FILTER (659_dRe-N1-BDNA-1_B23KFG5LT4_1;tnseq) 7s 5s - - 3.2 MB 1813% 130.4 KB 27.1 KB 0 bytes 36.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (659_dRe-N1-BDNA-1_B23KFG5LT4_1) 20s 3s 8s 8s 37.6 MB 276% 3.6 GB 5.2 MB 0 bytes 5.2 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (659_dRe-N1-BDNA-1_B23KFG5LT4_1) 3s 1s 1s 1s 21.6 MB 2623% 34.8 MB 34.9 MB 0 bytes 34.9 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_NORM (chip_pon) 1m 13s 56s 7s 9s 43.6 MB 272% 4.0 GB 5.5 MB 0 bytes 5.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_SORT (chip_pon) 10s 7s 1s 2s 21.6 MB 1696% 43.8 MB 44.1 MB 0 bytes 44.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_NORM (659_dRe-N1-BDNA-1_B23KFG5LT4_1) 19s 2s 7s 9s 43.9 MB 281% 3.6 GB 2.4 MB 0 bytes 2.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_SORT (659_dRe-N1-BDNA-1_B23KFG5LT4_1) 3s 1s - - 20.3 MB 4472% 9.5 MB 9.6 MB 0 bytes 9.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:PRE_FILTER_CHIP_CANDIDATES (659_dRe-N1-BDNA-1_B23KFG5LT4_1) 7s 2s 2s 2s 78.4 MB 264% 28.9 MB 5.6 MB 0 bytes 5.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SCORE_CHIP_VARIANTS (659_dRe-N1-BDNA-1_B23KFG5LT4_1) 6s 2s 2s 1s 303.1 MB 804% 25.5 MB 6.6 MB 0 bytes 6.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SENTIEON_GENOTYPE (659_dRe-N1-BDNA-1_B23KFG5LT4_1) 6m 31s 12s 2s 6m 16s 1.0 GB 503% 224.3 MB 327.0 KB 218.8 MB 144.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TABIX_GERMLINE (659_dRe-N1-BDNA-1_B23KFG5LT4_1;sentieon_haplotyper_rf) 6s 5s - - 9.3 MB 111% 1.9 MB 176.8 KB 0 bytes 180.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TRANSFER_CALLER_AD (659_dRe-N1-BDNA-1_B23KFG5LT4_1) 16s 2s 1s 12s 45.3 MB 346% 24.4 MB 6.3 MB 6.3 MB 6.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (659_dRe-N1-BDNA-1_B23KFG5LT4_1;tnseq) 1m 20s 2s 1m 15s 3s 6.2 GB 215% 642.2 MB 25.8 MB 0 bytes 22.9 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:TABIX_BGZIPTABIX (659_dRe-N1-BDNA-1_B23KFG5LT4_1;tnseq) 7s 5s - - 5.9 MB 108% 24.9 MB 4.3 MB 0 bytes 4.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_CHIP_PON (659_dRe-N1-BDNA-1_B23KFG5LT4_1) 12s 6s 3s 2s 387.2 MB 347% 27.1 MB 5.5 MB 0 bytes 5.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_GERMLINE (659_dRe-N1-BDNA-1_B23KFG5LT4_1) 9s 5s 2s 1s 131.3 MB 505% 23.5 MB 5.4 MB 0 bytes 5.4 MB 1
253 items found |
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