succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 21s 20s 0s 0s 0 bytes 84% 124.4 KB 1.1 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 3s 1s 0s 1s 18.3 MB 99% 2.1 MB 5.7 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (659_dc8-N1-BDNA-1_B23KFG5LT4_1) 16s 1s 5s 9s 1.1 GB 7931% 1.2 GB 4.7 MB 8.6 MB 27.9 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (659_dc8-N1-BDNA-1_B23KFG5LT4_1) 12m 3s 45s 8m 37s 2m 40s 1.7 GB 1149% 104.4 GB 32.3 MB 32.2 GB 720.7 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BCFTOOLS_STRIP_FILTER (659_dc8-N1-BDNA-1_B23KFG5LT4_1;tnseq) 5s 3s - - 14.3 MB 1143% 124.6 KB 22.4 KB 0 bytes 32.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (659_dc8-N1-BDNA-1_B23KFG5LT4_1) 19s 2s 7s 9s 43.5 MB 272% 3.4 GB 3.4 MB 0 bytes 3.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (659_dc8-N1-BDNA-1_B23KFG5LT4_1) 3s 2s 1s 0s 27.6 MB 2840% 25.7 MB 25.7 MB 0 bytes 25.7 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_NORM (chip_pon) 1m 5s 48s 8s 8s 42.9 MB 274% 4.0 GB 5.5 MB 0 bytes 5.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_SORT (chip_pon) 9s 6s 1s 2s 19.6 MB 1651% 43.8 MB 44.1 MB 0 bytes 44.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_NORM (659_dc8-N1-BDNA-1_B23KFG5LT4_1) 19s 2s 7s 9s 37.9 MB 267% 3.5 GB 2.0 MB 0 bytes 2.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_SORT (659_dc8-N1-BDNA-1_B23KFG5LT4_1) 3s 1s - - 18.7 MB 4620% 8.1 MB 8.1 MB 0 bytes 8.2 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:PRE_FILTER_CHIP_CANDIDATES (659_dc8-N1-BDNA-1_B23KFG5LT4_1) 8s 4s 1s 2s 78.7 MB 558% 23.0 MB 3.6 MB 0 bytes 3.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SCORE_CHIP_VARIANTS (659_dc8-N1-BDNA-1_B23KFG5LT4_1) 4s 1s 1s 1s 233.3 MB 1044% 20.9 MB 4.2 MB 0 bytes 4.2 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SENTIEON_GENOTYPE (659_dc8-N1-BDNA-1_B23KFG5LT4_1) 6m 45s 12s 3s 6m 29s 478.2 MB 462% 120.7 MB 285.4 KB 126.9 MB 56.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TABIX_GERMLINE (659_dc8-N1-BDNA-1_B23KFG5LT4_1;sentieon_haplotyper_rf) 6s 5s - - 9.3 MB 121% 1.7 MB 155.7 KB 0 bytes 160.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TRANSFER_CALLER_AD (659_dc8-N1-BDNA-1_B23KFG5LT4_1) 19s 6s 1s 11s 21.7 MB 751% 18.9 MB 4.0 MB 4.0 MB 4.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (659_dc8-N1-BDNA-1_B23KFG5LT4_1;tnseq) 1m 18s 2s 1m 14s 2s 6.1 GB 218% 643.2 MB 17.4 MB 0 bytes 14.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:TABIX_BGZIPTABIX (659_dc8-N1-BDNA-1_B23KFG5LT4_1;tnseq) 3s 2s 1s 0s 6.2 MB 108% 15.6 MB 2.7 MB 0 bytes 2.7 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_CHIP_PON (659_dc8-N1-BDNA-1_B23KFG5LT4_1) 9s 5s 2s 1s 387.2 MB 426% 23.2 MB 3.5 MB 0 bytes 3.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_GERMLINE (659_dc8-N1-BDNA-1_B23KFG5LT4_1) 6s 2s 1s 2s 118.4 MB 366% 19.5 MB 3.4 MB 0 bytes 3.4 MB 1
255 items found |
1 2 3 ... 12 13