|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (659_dc8-N1-BDNA-1_B23KFG5LT4_1)
|
8m 7s |
42s |
5m 50s |
1m 35s |
3.5 GB |
372% |
141.2 GB |
82.8 MB |
63.0 GB |
64.9 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_CALL (659_dc8-N1-BDNA-1_B23KFG5LT4_1)
|
24s |
17s |
5s |
2s |
172.6 MB |
155% |
75.4 MB |
110.4 KB |
0 bytes |
124.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_EXPORT (659_dc8-N1-BDNA-1_B23KFG5LT4_1)
|
23s |
17s |
5s |
1s |
166.9 MB |
172% |
75.3 MB |
141.4 KB |
0 bytes |
156.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_GENEMETRICS (659_dc8-N1-BDNA-1_B23KFG5LT4_1)
|
10s |
2s |
7s |
1s |
255.1 MB |
377% |
87.2 MB |
67.8 KB |
0 bytes |
84.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_GERMLINE_MANTA:MANTA_GERMLINE (659_dc8-N1-BDNA-1_B23KFG5LT4_1)
|
8m 1s |
35s |
5m 46s |
1m 40s |
1.0 GB |
1252% |
249.4 GB |
3.1 GB |
45.3 GB |
3.1 GB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:MERGE_SENTIEON_HAPLOTYPER_VCFS (659_dc8-N1-BDNA-1_B23KFG5LT4_1)
|
6s |
1s |
3s |
2s |
250.6 MB |
400% |
100.6 MB |
2.6 MB |
0 bytes |
2.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (659_dc8-N1-BDNA-1_B23KFG5LT4_1;chr14_64122012-64122133.bed)
|
4m 42s |
34s |
2m 21s |
1m 46s |
2.3 GB |
1194% |
27.5 GB |
3.6 MB |
6.8 GB |
189.3 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (659_dc8-N1-BDNA-1_B23KFG5LT4_1;chr1_69091-70008.bed)
|
4m 19s |
35s |
2m 4s |
1m 39s |
1.9 GB |
1192% |
24.1 GB |
3.5 MB |
7.5 GB |
195.0 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (659_dc8-N1-BDNA-1_B23KFG5LT4_1;chr19_47340800-47341813.bed)
|
2m 50s |
34s |
36s |
1m 39s |
1.6 GB |
1166% |
5.5 GB |
902.8 KB |
152.8 MB |
37.9 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (659_dc8-N1-BDNA-1_B23KFG5LT4_1;chr4_30730753-30730788.bed)
|
5m 1s |
34s |
2m 46s |
1m 40s |
2.2 GB |
1198% |
22.3 GB |
3.3 MB |
7.2 GB |
179.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (659_dc8-N1-BDNA-1_B23KFG5LT4_1;chr8_93795409-93795507.bed)
|
4m 52s |
55s |
2m 24s |
1m 32s |
2.0 GB |
1186% |
23.9 GB |
3.6 MB |
7.3 GB |
191.2 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:DIFF_DV_SENTIEON (659_dc8-N1-BDNA-1_B23KFG5LT4_1)
|
8s |
5s |
0s |
2s |
13.5 MB |
2572% |
10.2 MB |
18.6 KB |
0 bytes |
28.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:DV_RESCUE (659_dc8-N1-BDNA-1_B23KFG5LT4_1;germline_rescue_targets)
|
5m 24s |
1m 9s |
2m 40s |
1m 34s |
3.3 GB |
494% |
40.2 GB |
226.7 MB |
14.1 GB |
233.8 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:GT_CORRECTION (659_dc8-N1-BDNA-1_B23KFG5LT4_1)
|
10s |
2s |
5s |
2s |
1.8 GB |
193% |
73.5 MB |
1.8 MB |
0 bytes |
1.8 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:MERGE_FORCECALLED (659_dc8-N1-BDNA-1_B23KFG5LT4_1)
|
8s |
5s |
0s |
2s |
3.5 MB |
5239% |
11.7 MB |
9.0 MB |
220.0 KB |
3.4 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:SENTIEON_FORCECALL (659_dc8-N1-BDNA-1_B23KFG5LT4_1;germline_rescue_targets)
|
1m 25s |
1s |
10s |
1m 13s |
2.3 GB |
1056% |
6.9 GB |
132.1 KB |
1.8 GB |
10.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:SENTIEON_HAPLOTYPER_RF_FILTER (659_dc8-N1-BDNA-1_B23KFG5LT4_1)
|
9s |
1s |
4s |
3s |
1.7 GB |
595% |
91.7 MB |
3.1 MB |
0 bytes |
2.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:SPLIT_MULTIALLELIC (659_dc8-N1-BDNA-1_B23KFG5LT4_1)
|
20s |
3s |
7s |
9s |
43.3 MB |
272% |
3.5 GB |
1.7 MB |
0 bytes |
1.8 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:BCFTOOLS_QUERY (659_dc8-N1-BDNA-1_B23KFG5LT4_1)
|
8s |
6s |
0s |
1s |
25.7 MB |
7358% |
1.7 MB |
50.1 KB |
0 bytes |
56.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:INDEL_ENTROPY_ANNOTATION (659_dc8-N1-BDNA-1_B23KFG5LT4_1)
|
7s |
2s |
2s |
2s |
109.4 MB |
1294% |
44.8 MB |
8.6 MB |
0 bytes |
8.6 MB |
1 |