succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 54s 53s 0s 0s 0 bytes 112% 105.8 KB 1.1 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 14s 11s 0s 2s 18.9 MB 97% 2.1 MB 5.7 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (659_eeB-N1-BDNA-1_B23KFG5LT4_1) 16s 1s 5s 9s 1.2 GB 7369% 1.2 GB 4.5 MB 10.0 MB 27.8 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (659_eeB-N1-BDNA-1_B23KFG5LT4_1) 10m 57s 42s 7m 44s 2m 30s 1.6 GB 1146% 100.8 GB 29.4 MB 30.9 GB 717.9 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BCFTOOLS_STRIP_FILTER (659_eeB-N1-BDNA-1_B23KFG5LT4_1;tnseq) 7s 5s - - 18.8 MB 2220% 125.8 KB 22.6 KB 0 bytes 32.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (659_eeB-N1-BDNA-1_B23KFG5LT4_1) 20s 3s 7s 9s 37.3 MB 279% 3.4 GB 3.3 MB 0 bytes 3.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (659_eeB-N1-BDNA-1_B23KFG5LT4_1) 4s 2s 1s 1s 22.5 MB 2909% 24.7 MB 24.7 MB 0 bytes 24.8 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_NORM (chip_pon) 1m 21s 1m 2s 8s 10s 46.8 MB 254% 4.0 GB 5.5 MB 0 bytes 6.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_SORT (chip_pon) 3s 1s 1s 1s 21.8 MB 1666% 43.8 MB 44.1 MB 0 bytes 44.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_NORM (659_eeB-N1-BDNA-1_B23KFG5LT4_1) 19s 2s 7s 9s 37.6 MB 265% 3.5 GB 2.0 MB 0 bytes 2.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_SORT (659_eeB-N1-BDNA-1_B23KFG5LT4_1) 3s 1s - - 20.7 MB 4846% 8.0 MB 8.0 MB 0 bytes 8.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:PRE_FILTER_CHIP_CANDIDATES (659_eeB-N1-BDNA-1_B23KFG5LT4_1) 5s 1s 1s 2s 20.2 MB 1195% 22.7 MB 3.5 MB 0 bytes 3.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SCORE_CHIP_VARIANTS (659_eeB-N1-BDNA-1_B23KFG5LT4_1) 8s 5s 1s 1s 224.6 MB 1065% 20.6 MB 4.0 MB 0 bytes 4.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SENTIEON_GENOTYPE (659_eeB-N1-BDNA-1_B23KFG5LT4_1) 5m 45s 1m 3s 1s 4m 40s 213.4 MB 63% 29.6 MB 283.5 KB 31.7 MB 60.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TABIX_GERMLINE (659_eeB-N1-BDNA-1_B23KFG5LT4_1;sentieon_haplotyper_rf) 2s 1s - - 9.7 MB 116% 1.6 MB 155.8 KB 0 bytes 160.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TRANSFER_CALLER_AD (659_eeB-N1-BDNA-1_B23KFG5LT4_1) 32s 13s 1s 17s 31.9 MB 816% 18.8 MB 3.9 MB 3.7 MB 3.9 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (659_eeB-N1-BDNA-1_B23KFG5LT4_1;tnseq) 1m 15s 2s 1m 10s 3s 11.0 GB 828% 641.1 MB 17.2 MB 0 bytes 14.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:TABIX_BGZIPTABIX (659_eeB-N1-BDNA-1_B23KFG5LT4_1;tnseq) 3s 2s 1s 0s 6.1 MB 105% 15.3 MB 2.6 MB 0 bytes 2.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_CHIP_PON (659_eeB-N1-BDNA-1_B23KFG5LT4_1) 13s 8s 3s 1s 387.6 MB 230% 23.0 MB 3.4 MB 0 bytes 3.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_GERMLINE (659_eeB-N1-BDNA-1_B23KFG5LT4_1) 6s 3s 1s 1s 117.5 MB 343% 19.3 MB 3.3 MB 0 bytes 3.3 MB 1
255 items found |
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