|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (659_eeB-N1-BDNA-1_B23KFG5LT4_1)
|
8m 21s |
1m 36s |
5m 27s |
1m 18s |
3.6 GB |
359% |
134.6 GB |
82.7 MB |
47.5 GB |
64.9 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_CALL (659_eeB-N1-BDNA-1_B23KFG5LT4_1)
|
24s |
17s |
5s |
2s |
163.6 MB |
162% |
75.4 MB |
112.2 KB |
0 bytes |
128.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_EXPORT (659_eeB-N1-BDNA-1_B23KFG5LT4_1)
|
8s |
3s |
3s |
2s |
132.3 MB |
179% |
75.3 MB |
142.8 KB |
0 bytes |
156.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_GENEMETRICS (659_eeB-N1-BDNA-1_B23KFG5LT4_1)
|
21s |
12s |
7s |
2s |
251.7 MB |
380% |
87.2 MB |
67.8 KB |
0 bytes |
84.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_GERMLINE_MANTA:MANTA_GERMLINE (659_eeB-N1-BDNA-1_B23KFG5LT4_1)
|
10m 55s |
2m 7s |
7m 41s |
1m 7s |
1.1 GB |
1231% |
284.9 GB |
3.1 GB |
47.7 GB |
3.1 GB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:MERGE_SENTIEON_HAPLOTYPER_VCFS (659_eeB-N1-BDNA-1_B23KFG5LT4_1)
|
6s |
1s |
3s |
2s |
328.9 MB |
372% |
100.6 MB |
2.5 MB |
0 bytes |
2.5 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (659_eeB-N1-BDNA-1_B23KFG5LT4_1;chr14_64122012-64122133.bed)
|
5m 0s |
1m 26s |
2m 12s |
1m 21s |
2.3 GB |
1188% |
25.9 GB |
3.5 MB |
6.7 GB |
189.2 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (659_eeB-N1-BDNA-1_B23KFG5LT4_1;chr1_69091-70008.bed)
|
4m 46s |
1m 27s |
1m 41s |
1m 37s |
1.8 GB |
1180% |
23.0 GB |
3.4 MB |
7.1 GB |
195.0 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (659_eeB-N1-BDNA-1_B23KFG5LT4_1;chr19_47340800-47341813.bed)
|
3m 22s |
1m 20s |
34s |
1m 27s |
1.4 GB |
1143% |
4.9 GB |
910.1 KB |
163.4 MB |
37.9 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (659_eeB-N1-BDNA-1_B23KFG5LT4_1;chr4_30730753-30730788.bed)
|
5m 23s |
1m 21s |
2m 35s |
1m 26s |
2.0 GB |
1183% |
22.8 GB |
3.3 MB |
8.1 GB |
179.7 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (659_eeB-N1-BDNA-1_B23KFG5LT4_1;chr8_93795409-93795507.bed)
|
5m 1s |
1m 26s |
2m 4s |
1m 30s |
2.1 GB |
1186% |
22.7 GB |
3.6 MB |
6.9 GB |
191.2 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:DIFF_DV_SENTIEON (659_eeB-N1-BDNA-1_B23KFG5LT4_1)
|
5s |
2s |
0s |
2s |
14.0 MB |
2591% |
10.2 MB |
18.4 KB |
0 bytes |
28.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:DV_RESCUE (659_eeB-N1-BDNA-1_B23KFG5LT4_1;germline_rescue_targets)
|
7m 3s |
2m 55s |
3m 3s |
1m 4s |
6.2 GB |
415% |
40.3 GB |
227.8 MB |
12.4 GB |
235.2 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:GT_CORRECTION (659_eeB-N1-BDNA-1_B23KFG5LT4_1)
|
10s |
3s |
5s |
1s |
1.8 GB |
191% |
73.5 MB |
1.7 MB |
0 bytes |
1.7 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:MERGE_FORCECALLED (659_eeB-N1-BDNA-1_B23KFG5LT4_1)
|
6s |
3s |
0s |
2s |
3.5 MB |
421% |
11.5 MB |
8.9 MB |
0 bytes |
3.3 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:SENTIEON_FORCECALL (659_eeB-N1-BDNA-1_B23KFG5LT4_1;germline_rescue_targets)
|
1m 23s |
2s |
12s |
1m 8s |
2.0 GB |
1074% |
6.7 GB |
131.6 KB |
2.0 GB |
10.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:SENTIEON_HAPLOTYPER_RF_FILTER (659_eeB-N1-BDNA-1_B23KFG5LT4_1)
|
10s |
2s |
5s |
2s |
1.7 GB |
585% |
91.6 MB |
3.0 MB |
0 bytes |
2.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:SPLIT_MULTIALLELIC (659_eeB-N1-BDNA-1_B23KFG5LT4_1)
|
19s |
3s |
7s |
8s |
44.0 MB |
264% |
3.5 GB |
1.7 MB |
0 bytes |
1.7 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:BCFTOOLS_QUERY (659_eeB-N1-BDNA-1_B23KFG5LT4_1)
|
5s |
3s |
0s |
1s |
33.8 MB |
8259% |
1.7 MB |
48.8 KB |
0 bytes |
56.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:INDEL_ENTROPY_ANNOTATION (659_eeB-N1-BDNA-1_B23KFG5LT4_1)
|
7s |
3s |
2s |
1s |
109.4 MB |
1346% |
43.7 MB |
8.5 MB |
0 bytes |
8.5 MB |
1 |