succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 40s 38s 0s 1s 0 bytes 160% 69.2 KB 1.1 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 4s 2s 0s 1s 18.7 MB 94% 2.1 MB 5.6 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (659_zO-N1-BDNA-1_B23KFG5LT4_1) 14s 1s 3s 9s 615.1 MB 4916% 1.1 GB 4.2 MB 0 bytes 27.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (659_zO-N1-BDNA-1_B23KFG5LT4_1) 9m 11s 40s 6m 21s 2m 9s 1.4 GB 1146% 85.1 GB 26.0 MB 25.6 GB 714.7 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BCFTOOLS_STRIP_FILTER (659_zO-N1-BDNA-1_B23KFG5LT4_1;tnseq) 7s 5s - - 14.4 MB 2156% 125.8 KB 22.5 KB 0 bytes 32.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (659_zO-N1-BDNA-1_B23KFG5LT4_1) 20s 3s 7s 9s 42.8 MB 258% 3.4 GB 3.1 MB 0 bytes 3.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (659_zO-N1-BDNA-1_B23KFG5LT4_1) 4s 2s - - 22.0 MB 3962% 22.7 MB 22.7 MB 0 bytes 22.7 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_NORM (chip_pon) 1m 16s 57s 10s 8s 29.6 MB 123% 4.0 GB 5.5 MB 0 bytes 5.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_SORT (chip_pon) 18s 15s 1s 2s 20.8 MB 1581% 43.8 MB 44.1 MB 0 bytes 44.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_NORM (659_zO-N1-BDNA-1_B23KFG5LT4_1) 19s 2s 7s 9s 37.6 MB 288% 3.5 GB 2.0 MB 40.0 KB 2.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_SORT (659_zO-N1-BDNA-1_B23KFG5LT4_1) 3s 1s 1s 1s 21.5 MB 5274% 7.9 MB 7.9 MB 0 bytes 7.9 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:PRE_FILTER_CHIP_CANDIDATES (659_zO-N1-BDNA-1_B23KFG5LT4_1) 4s 1s 1s 1s 36.8 MB 1277% 22.0 MB 3.2 MB 0 bytes 3.2 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SCORE_CHIP_VARIANTS (659_zO-N1-BDNA-1_B23KFG5LT4_1) 4s 1s 1s 1s 213.5 MB 1110% 20.0 MB 3.7 MB 0 bytes 3.8 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SENTIEON_GENOTYPE (659_zO-N1-BDNA-1_B23KFG5LT4_1) 6m 59s 41s 3s 6m 14s 467.5 MB 298% 114.7 MB 286.2 KB 121.7 MB 56.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TABIX_GERMLINE (659_zO-N1-BDNA-1_B23KFG5LT4_1;sentieon_haplotyper_rf) 7s 5s - - 9.3 MB 125% 1.6 MB 152.4 KB 0 bytes 156.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TRANSFER_CALLER_AD (659_zO-N1-BDNA-1_B23KFG5LT4_1) 13s 3s 1s 8s 28.1 MB 438% 18.2 MB 3.6 MB 3.6 MB 3.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (659_zO-N1-BDNA-1_B23KFG5LT4_1;tnseq) 1m 21s 2s 1m 16s 3s 5.9 GB 235% 643.0 MB 16.1 MB 0 bytes 13.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:TABIX_BGZIPTABIX (659_zO-N1-BDNA-1_B23KFG5LT4_1;tnseq) 6s 3s - - 6.3 MB 100% 14.1 MB 2.4 MB 0 bytes 2.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_CHIP_PON (659_zO-N1-BDNA-1_B23KFG5LT4_1) 9s 5s 1s 2s 387.2 MB 786% 22.6 MB 3.1 MB 0 bytes 3.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_GERMLINE (659_zO-N1-BDNA-1_B23KFG5LT4_1) 7s 4s 0s 2s 18.9 MB 1434% 18.9 MB 3.1 MB 0 bytes 3.1 MB 1
255 items found |
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