succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 14s 12s 0s 1s 0 bytes 178% 69.6 KB 1.1 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 3s 1s 0s 1s 18.6 MB 96% 2.1 MB 5.6 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (659_zO-N1-BDNA-1_B23KFG5LT4_1) 14s 2s 3s 8s 420.9 MB 2218% 1.1 GB 4.2 MB 0 bytes 27.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (659_zO-N1-BDNA-1_B23KFG5LT4_1) 9m 12s 38s 6m 22s 2m 11s 1.5 GB 1144% 85.1 GB 26.0 MB 25.6 GB 714.7 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BCFTOOLS_STRIP_FILTER (659_zO-N1-BDNA-1_B23KFG5LT4_1;tnseq) 3s 1s - - 22.8 MB 7648% 135.3 KB 22.5 KB 0 bytes 32.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (659_zO-N1-BDNA-1_B23KFG5LT4_1) 20s 3s 7s 9s 37.3 MB 255% 3.4 GB 3.1 MB 0 bytes 3.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (659_zO-N1-BDNA-1_B23KFG5LT4_1) 4s 2s - - 27.1 MB 3566% 22.7 MB 22.7 MB 0 bytes 22.7 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_NORM (chip_pon) 38s 18s 10s 9s 34.2 MB 120% 4.0 GB 5.5 MB 0 bytes 5.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_SORT (chip_pon) 16s 13s 2s 1s 127.8 MB 193% 43.8 MB 44.1 MB 0 bytes 44.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_NORM (659_zO-N1-BDNA-1_B23KFG5LT4_1) 19s 3s 7s 8s 42.4 MB 270% 3.5 GB 2.0 MB 0 bytes 2.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_SORT (659_zO-N1-BDNA-1_B23KFG5LT4_1) 4s 2s - - 25.3 MB 3403% 7.9 MB 7.9 MB 0 bytes 7.9 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:PRE_FILTER_CHIP_CANDIDATES (659_zO-N1-BDNA-1_B23KFG5LT4_1) 7s 3s 2s 1s 77.5 MB 318% 21.9 MB 3.2 MB 0 bytes 3.2 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SCORE_CHIP_VARIANTS (659_zO-N1-BDNA-1_B23KFG5LT4_1) 8s 3s 2s 2s 211.8 MB 236% 20.0 MB 3.7 MB 0 bytes 3.8 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SENTIEON_GENOTYPE (659_zO-N1-BDNA-1_B23KFG5LT4_1) 4m 30s 9s 4s 4m 16s 463.5 MB 320% 114.7 MB 289.5 KB 125.6 MB 56.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TABIX_GERMLINE (659_zO-N1-BDNA-1_B23KFG5LT4_1;sentieon_haplotyper_rf) 4s 2s - - 9.5 MB 137% 1.6 MB 152.4 KB 0 bytes 156.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TRANSFER_CALLER_AD (659_zO-N1-BDNA-1_B23KFG5LT4_1) 20s 9s 1s 9s 17.7 MB 453% 18.2 MB 3.6 MB 3.6 MB 3.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (659_zO-N1-BDNA-1_B23KFG5LT4_1;tnseq) 1m 21s 1s 1m 17s 3s 6.3 GB 219% 642.9 MB 16.1 MB 0 bytes 13.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:TABIX_BGZIPTABIX (659_zO-N1-BDNA-1_B23KFG5LT4_1;tnseq) 5s 3s - - 6.1 MB 112% 14.1 MB 2.4 MB 0 bytes 2.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_CHIP_PON (659_zO-N1-BDNA-1_B23KFG5LT4_1) 8s 2s 3s 2s 386.5 MB 242% 22.5 MB 3.1 MB 0 bytes 3.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_GERMLINE (659_zO-N1-BDNA-1_B23KFG5LT4_1) 19s 15s 1s 2s 115.4 MB 376% 18.8 MB 3.1 MB 0 bytes 3.1 MB 1
255 items found |
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