Error executing process > 'SEQTOOL (dna_s1343)'

Caused by:
  Process `SEQTOOL (dna_s1343)` terminated with an error exit status (127)


Command executed:

  # Matplotlib cache dir must be writable; default location may not be
  export MPLCONFIGDIR=/tmp/matplotlib
  
  all_qc \
      -bam dna_s1343.bam \
      -reference Homo_sapiens_assembly38.fasta \
      -beds altera_v2_targets_effective_coding_hg38.bed altera_v2_targets_effective_noncoding_hg38.bed xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v2.bed altera_v2_targets_coding_hg38.bed altera_v2_targets_noncoding_hg38.bed altera_v2_probes_noncoding_postQC_hg38.bed altera_v2_probes_coding_postQC_hg38.bed \
      -dbsnp_bed dbsnp138_hg38_common.bed \
      -dbsnp_vcf Homo_sapiens_assembly38.dbsnp138.vcf.gz \
      -contamination_bed dbsnp_hg38_contam_sites.bed \
      -output_folder qc \
      -threads 31 \
  
  
  merge_qc -folders qc/* -output qc/dna_s1343_full_basic_stats.tsv
  
  head -n1 qc/dna_s1343_full_basic_stats.tsv > qc/dna_s1343_basic_stats.tsv
  grep -e "$(basename altera_v2_targets_effective_coding_hg38.bed)" qc/dna_s1343_full_basic_stats.tsv >> qc/dna_s1343_basic_stats.tsv
  
  cat <<-END_VERSIONS > versions.yml
  "SEQTOOL":
      seqtool: 1.5.1
  END_VERSIONS

Command exit status:
  127

Command output:
  (empty)

Command error:
  .command.sh: line 6: all_qc: command not found

Work dir:
  s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/512f3a9d453174e240c4db7cc27874

Container:
  quay.io/tempralla/viptool:latest

Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line