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Filename
dna_s1343_full_basic_stats.tsv
Full Path
s3://natera-platform-sandbox/users/abshah/daq/outputs/seqtool-baseline-2/qc/dna_s1343_full_basic_stats.tsv
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5.0 KB
Workflow Run
seqtool-baseline-2
Published
Jan 15, 2026 5:29 AM

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name reads unmapped frac_unmapped unique_reads frac_dupes pairs frac_reads_on_target frac_reads_off_target frac_pairs_on_target frac_pairs_off_target frag_size_q20 frag_size_median frag_size_q80 proper_pairs frac_proper_pairs pairs_on_target pairs_off_target reads_on_target reads_off_target frag_size_mean frag_size_std dupes n_q20 n_q25 n_q30 n_bases bed saturation_at_1000000_reads gc_0.0 gc_0.05 gc_0.1 gc_0.15 gc_0.2 gc_0.25 gc_0.3 gc_0.35 gc_0.4 gc_0.45 gc_0.5 gc_0.55 gc_0.6 gc_0.65 gc_0.7 gc_0.75 gc_0.8 gc_0.85 gc_0.9 gc_0.95 gc_1.0 min_depth mean_depth cv_depth max_depth q1_depth q5_depth q50_depth q95_depth q99_depth lt100x lt700x n_bases_gt30x n_bases_gt100x frac_bases_gt30x frac_bases_gt100x roi_size contam n_sites loglik lrt bed_base_count
dna_s1343 755547316 1037026 0.001373 755547316 0.0 376795283 0.094853 0.903774 0.117485 0.882515 160 260 407 371700460 0.986478 43669139 328031321 71665904 682844386 289.412897 115.854042 0 0.988014 0.95579 0.95579 113931053790 altera_v2_targets_effective_coding_hg38.bed 960424 0.476444 0.0 0.0 0.07604 0.357187 0.390912 0.533498 0.740727 0.814886 0.846068 0.950095 1.066618 1.150091 1.383122 1.542698 1.722024 1.476765 0.750828 1.405841 0.0 0.562 0.0 2949.638583 0.440747 14392.0 584.0 915.0 2574.0 6164.0 8412.0 0.000936 0.020519 1631524 1631402 0.999139 0.999064 1632930 0.0165 7438 -143143.2127 21474.6513 1632931
dna_s1343 755547316 1037026 0.001373 755547316 0.0 376795283 0.208313 0.790314 0.223564 0.776436 160 260 407 371700460 0.986478 83098943 288601517 157390410 597119880 289.412897 115.854042 0 0.988014 0.95579 0.95579 113931053790 altera_v2_targets_effective_noncoding_hg38.bed 960424 0.122901 0.0 0.0 0.115715 0.128138 0.267875 0.890739 1.207897 1.242314 1.123485 0.975759 1.094479 1.02029 0.664022 0.705935 0.732757 0.50971 0.526998 0.042683 0.0 0.142876 0.0 4585.216191 0.43822 31416.0 372.0 982.0 4228.0 9138.0 12804.0 0.005662 0.028541 3287289 3286417 0.994601 0.994338 3305132 0.0165 7438 -143143.2127 21474.6513 3307258
dna_s1343 755547316 1037026 0.001373 755547316 0.0 376795283 0.478076 0.520551 0.582095 0.417905 160 260 407 371700460 0.986478 216364860 155335600 361209286 393301004 289.412897 115.854042 0 0.988014 0.95579 0.95579 113931053790 xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v2.bed 960424 0.085037 0.0 0.479419 0.356892 0.56574 0.687893 0.768279 0.888446 0.995895 1.003383 0.986045 1.024982 0.99121 1.023429 1.093015 1.16569 1.04788 0.761705 2.009103 0.0 1.150262 0.0 706.319376 0.403413 14076.0 120.0 238.0 612.0 1448.0 2300.0 0.008267 0.597182 32132382 32059256 0.993995 0.991733 32326490 0.0165 7438 -143143.2127 21474.6513 32521855
dna_s1343 755547316 1037026 0.001373 755547316 0.0 376795283 0.094869 0.903759 0.117497 0.882503 160 260 407 371700460 0.986478 43673556 328026904 71677788 682832502 289.412897 115.854042 0 0.988014 0.95579 0.95579 113931053790 altera_v2_targets_coding_hg38.bed 960424 0.476021 0.0 0.0 0.075973 0.35687 0.390565 0.529947 0.740921 0.813279 0.846237 0.950619 1.065522 1.151619 1.38013 1.54472 1.771829 1.497135 0.777369 1.828272 0.0 0.542185 0.0 2949.465811 0.440812 14392.0 583.0 915.0 2573.0 6164.0 8414.0 0.000935 0.02062 1632945 1632823 0.99914 0.999065 1634351 0.0165 7438 -143143.2127 21474.6513 1634355
dna_s1343 755547316 1037026 0.001373 755547316 0.0 376795283 0.214317 0.78431 0.227597 0.772403 160 260 407 371700460 0.986478 84597742 287102718 161926811 592583479 289.412897 115.854042 0 0.988014 0.95579 0.95579 113931053790 altera_v2_targets_noncoding_hg38.bed 960424 0.135895 0.0 0.0 0.10996 0.138789 0.243383 0.88674 1.239037 1.312551 1.15374 0.802831 0.947073 1.075195 0.734448 1.017725 0.970425 0.677993 0.76765 0.261091 0.0 0.115032 0.0 4107.307684 0.524431 31416.0 0.0 151.0 3830.0 8862.0 12501.0 0.046211 0.102952 3713133 3686350 0.960719 0.953789 3864954 0.0165 7438 -143143.2127 21474.6513 3868304
dna_s1343 755547316 1037026 0.001373 755547316 0.0 376795283 0.20968 0.788947 0.223859 0.776141 160 260 407 371700460 0.986478 83208411 288492049 158423357 596086933 289.412897 115.854042 0 0.988014 0.95579 0.95579 113931053790 altera_v2_probes_noncoding_postQC_hg38.bed 960424 0.0 0.0 0.0 0.800621 0.91652 0.923695 0.954212 0.983679 0.992001 1.034839 1.058036 1.063611 1.064448 0.97069 0.951686 1.046138 0.933399 1.006117 1.03413 0.0 0.0 0.0 4511.200339 0.44626 31416.0 359.0 951.0 4145.0 9076.0 12743.0 0.006146 0.029605 3400020 3399141 0.994111 0.993854 3420162 0.0165 7438 -143143.2127 21474.6513 3425160
dna_s1343 755547316 1037026 0.001373 755547316 0.0 376795283 0.10502 0.893607 0.123434 0.876566 160 260 407 371700460 0.986478 45880560 325819900 79347922 675162368 289.412897 115.854042 0 0.988014 0.95579 0.95579 113931053790 altera_v2_probes_coding_postQC_hg38.bed 960424 0.0 0.0 0.0 0.0 0.670828 1.062832 1.065782 1.068343 1.00274 0.947454 0.921518 0.975737 1.009962 1.021178 1.051581 1.081322 1.084232 0.899211 2.400145 0.0 0.0 0.0 2768.79828 0.46171 15602.0 506.0 809.0 2377.0 5987.0 8286.0 0.001121 0.031856 2282212 2281936 0.998999 0.998879 2284498 0.0165 7438 -143143.2127 21474.6513 2300280
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