dna_s1343_basic_stats.tsv - Workflow Tracker

Filename: dna_s1343_basic_stats.tsv
Full Path: s3://natera-platform-sandbox/users/abshah/daq/outputs/seqtool-baseline-2/qc/dna_s1343_basic_stats.tsv
Size: 1.3 KB
Workflow Run: seqtool-baseline-2
Published: Jan 15, 2026 5:29 AM

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
dna_s1343	755547316	1037026	0.001373	755547316	0.0	376795283	0.094853	0.903774	0.117485	0.882515	160	260	407	371700460	0.986478	43669139	328031321	71665904	682844386	289.412897	115.854042	0	0.988014	0.95579	0.95579	113931053790	altera_v2_targets_effective_coding_hg38.bed	960424	0.476444	0.0	0.0	0.07604	0.357187	0.390912	0.533498	0.740727	0.814886	0.846068	0.950095	1.066618	1.150091	1.383122	1.542698	1.722024	1.476765	0.750828	1.405841	0.0	0.562	0.0	2949.638583	0.440747	14392.0	584.0	915.0	2574.0	6164.0	8412.0	0.000936	0.020519	1631524	1631402	0.999139	0.999064	1632930	0.0165	7438	-143143.2127	21474.6513	1632931

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