Tasks
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Resume
To resume this run, resubmit with same or fixed code. You can also change other parameters but that will affect caching behavior.
-resume 6db944b0-bfe5-4823-b6cf-54a2a96c0127 -name seqtool-ultra1-1
Error Report
Error executing process > 'SEQTOOL (dna_s1343)'
Caused by:
K8s pod image cannot be pulled -- rpc error: code = NotFound desc = failed to pull and unpack image "292967571998.dkr.ecr.us-west-2.amazonaws.com/daq/seqtool:ultra1": failed to resolve reference "292967571998.dkr.ecr.us-west-2.amazonaws.com/daq/seqtool:ultra1": 292967571998.dkr.ecr.us-west-2.amazonaws.com/daq/seqtool:ultra1: not found
Command executed:
# Matplotlib cache dir must be writable; default location may not be
export MPLCONFIGDIR=/tmp/matplotlib
all_qc \
-bam dna_s1343.bam \
-reference Homo_sapiens_assembly38.fasta \
-beds altera_v2_targets_effective_coding_hg38.bed altera_v2_targets_effective_noncoding_hg38.bed xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v2.bed altera_v2_targets_coding_hg38.bed altera_v2_targets_noncoding_hg38.bed altera_v2_probes_noncoding_postQC_hg38.bed altera_v2_probes_coding_postQC_hg38.bed \
-dbsnp_bed dbsnp138_hg38_common.bed \
-dbsnp_vcf Homo_sapiens_assembly38.dbsnp138.vcf.gz \
-contamination_bed dbsnp_hg38_contam_sites.bed \
-output_folder qc \
-threads 31 \
merge_qc -folders qc/* -output qc/dna_s1343_full_basic_stats.tsv
head -n1 qc/dna_s1343_full_basic_stats.tsv > qc/dna_s1343_basic_stats.tsv
grep -e "$(basename altera_v2_targets_effective_coding_hg38.bed)" qc/dna_s1343_full_basic_stats.tsv >> qc/dna_s1343_basic_stats.tsv
cat <<-END_VERSIONS > versions.yml
"SEQTOOL":
seqtool: 1.5.1
END_VERSIONS
Command exit status:
-
Command output:
(empty)
Work dir:
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/0cab857ebba12acae2554fa35ff3b8
Container:
292967571998.dkr.ecr.us-west-2.amazonaws.com/daq/seqtool:ultra1
Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run`
Workflow
- Language / Cluster
- Nextflow / pltf-dev
- Session ID
- 6db944b0-bfe5-4823-b6cf-54a2a96c0127
- Source
- /app/seqtool_test.nf
- Work Dir
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work
- Submitted By
- abshah
- Resumed
- No
Cost and Runtime
- Status
- failed
- Cost
- $0.00
- Outputs
- 3 MB
- Started
- Jan 14, 2026 11:39 PM
- Completed
- Jan 14, 2026 11:41 PM
- Duration
- 1m 41s
- Post-workflow Transfer
- 0s
- Exit Status
- -
- Peak Tasks / CPU / Mem
- 1 / 31 / 62.0 GB