Tasks
Actions
Resume
To resume this run, resubmit with same or fixed code. You can also change other parameters but that will affect caching behavior.
-resume 0618c089-6a3b-4855-b19b-a03b4cc7ce83 -name signatera-test
Error Report
Error executing process > 'NFCORE_HARMONIZE:HARMONIZE:HARMONIZE_SNV:HARMONIZE_SNV_SIGNATERA:TABIX_POST_BGZIP (1029_0NX)'
Caused by:
Process `NFCORE_HARMONIZE:HARMONIZE:HARMONIZE_SNV:HARMONIZE_SNV_SIGNATERA:TABIX_POST_BGZIP (1029_0NX)` terminated with an error exit status (1)
Command executed:
tabix \
--threads 1 \
-p vcf \
1029_0NX_somatic_snv_vep_vcf_input.vcf.gz
Command exit status:
1
Command output:
(empty)
Command error:
[E::hts_idx_push] Chromosome blocks not continuous
tbx_index_build3 failed: 1029_0NX_somatic_snv_vep_vcf_input.vcf.gz
Work dir:
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/37f5ed6843b7f76f1d6d3a60c9dc8f
Container:
community.wave.seqera.io/library/htslib:1.21--ff8e28a189fbecaa
Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run`
Workflow
- Language / Cluster
- Nextflow / pltf-dev
- Session ID
- 0618c089-6a3b-4855-b19b-a03b4cc7ce83
- Source
- /code/main.nf
- Work Dir
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work
- Submitted By
- sgreer
- Resumed
- No
Cost and Runtime
- Status
- failed
- Cost
- $0.03
- Outputs
- 0 B
- Started
- Mar 01, 2026 12:47 AM
- Completed
- Mar 01, 2026 12:50 AM
- Duration
- 2m 58s
- Post-workflow Transfer
- 1m 14s
- Exit Status
- 1
- Peak Tasks / CPU / Mem
- 31 / 59 / 230.0 GB