Error executing process > 'ASSEMBLY_PIPELINE:ASSEMBLY_CALL (4)'

Caused by:
  Can't stage file /code/NO_FILE -- file does not exist


Command executed:

  nipt_assembly_call.py \
      --bam 3599996067_r8_L26.bam \
      --ref Homo_sapiens_assembly38.fasta \
      --output HG00438_3599996067_r8_L26.assembly.vcf \
      --sample-name HG00438_3599996067_r8_L26 \
      --bed xgen-exome-research-panel-v2-targets-hg38.bed \
      --ff 0.0 \
      --min-depth 30 \
      --min-mapq 20 \
      --min-alt-count 3 \
      --min-alt-frac 0.05 \
      --min-gq 20 \
      --max-strand-bias 0.4 \
      --default-af 0.5 \

Command exit status:
  -

Command output:
  (empty)

Container:
  901094524821.dkr.ecr.us-west-2.amazonaws.com/nipt-caller:assembly-latest

Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line