Error executing process > 'ASSEMBLY_PIPELINE:ASSEMBLY_CALL (HG00136_3574260681_r7)'

Caused by:
  Process `ASSEMBLY_PIPELINE:ASSEMBLY_CALL (HG00136_3574260681_r7)` terminated with an error exit status (1)


Command executed:

  nipt_assembly_call.py \
      --bam 3574260681_r7.bam \
      --ref Homo_sapiens_assembly38.fasta \
      --output HG00136_3574260681_r7.assembly.vcf \
      --sample-name HG00136_3574260681_r7 \
      --bed xgen-exome-research-panel-v2-targets-hg38.bed \
      --ff 0.0 \
      --min-depth 30 \
      --min-mapq 20 \
      --min-alt-count 3 \
      --min-alt-frac 0.05 \
      --min-gq 20 \
      --max-strand-bias 0.4 \
      --default-af 0.5

Command exit status:
  1

Command output:
  (empty)

Command error:
  Traceback (most recent call last):
    File "/tmp/nxf.yUvjttNuZo/nextflow-bin/nipt_assembly_call.py", line 17, in <module>
      from src.io.pileup import call_variants
  ModuleNotFoundError: No module named 'src.io.pileup'

Work dir:
  s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/2559829792e11dc5bf1730a0f8de1c

Container:
  901094524821.dkr.ecr.us-west-2.amazonaws.com/nipt-caller:assembly-latest

Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line